Changeset 2494

Timestamp:

2010-12-20T15:45:25+01:00 (14 years ago)

Author:

flavoni

Message:

add README to use sette utility, and small enhancements, see ticket #752

Location:

branches/nemo_v3_3_beta/NEMOGCM/SETTE

Files:

• README (added)
• all_functions.sh (modified) (3 diffs)
• fcm_job.sh (modified) (2 diffs)
• sette.sh (modified) (4 diffs)

branches/nemo_v3_3_beta/NEMOGCM/SETTE/all_functions.sh

@@ -26 +26 @@
 # ::
 #
-#  $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC
+#  $ ./set_namelist.sh INPUT_NAMELIST VARIABLE VALUE 
 #
 #
@@ -35 +35 @@
 # Simple job for SET TESTS for NEMO (SETTE)
 
+# function superegrep
+# input variable value
+
 # function set_namelist
-# input variable value
+# input namelist_name variable value
 # output namelist
 
@@ -44 +47 @@
     }
 
-# USAGE : if you want to add a string with " : ./test var_name \"new_value\"
+usage=" Usage : set_namelist input_namelist variable_name value"
+usage=" if value is a string ths is neede syntax : ./set_namelist namelist_name var_name \"new_value\"
+
 # function to set namelists parameters
 set_namelist () {

branches/nemo_v3_3_beta/NEMOGCM/SETTE/fcm_job.sh

@@ -66 +66 @@
 if [ "$(cat $1 | grep -c ".tar" )" -ne 0 ] ; then
    cp ${FORCING_DIR}/${tar_file} ${INPUT_DIR}/.
-   cd ${INPUT_DIR} ; tar xvf ${INPUT_DIR}/*.tar
+   cd ${INPUT_DIR} ; tar xvf ${INPUT_DIR}/*.tar ; gunzip *gz
 fi 
 
@@ -89 +89 @@
    ./opa
 else
+# example for brodie (NEC SX8) machine
    mpirun -np ${NB_PROC} opa
 # example for dedale machine
 #  mpirun --mca btl self,tcp -np ${NB_PROC} opa
-# example for vargas machine
+# example for vargas (IBM Power6) machine
 #  mpiexec -n ${NB_PROC} opa
 fi

branches/nemo_v3_3_beta/NEMOGCM/SETTE/sette.sh

@@ -1 @@
-#  $ ./sette.sh
 #
 #
@@ -13 +12 @@
 # $Id: sette.sh 2158 2010-10-28 12:30:03Z sflod $
 #
-#
-#
 #   * creation
-#
 #-
 #
-SETTE_DIR=/usr/temp/sflod/NEMOGCM/SETTE
+# This is the principal script of SETTE 
+# here are described some examples to run nemo
+# this script creates MY_CONFIG directory and in this one there is VALIDATION directory
+# in which are stored output files
+# at this point of developpement there is no automatic diff of solver.stat files
+# user have to set duration of the run with set_namelist function
+# and if he wants to do a restart (again with set_namelist function)
+# and then he has to compare by hand output solver.stat
+#
+# USER MODIFICATIONS
+# in sette.sh script :
+#     SETTE_DIR : base directory for SETTE
+#     makenemo -m : machine (compilator); see ./makenemo -m help 
+#         -n : config name (in examples config_name_nproci_nprocj), see ./makenemo -n help 
+#         -r : reference configuration (if you don't give it you have to choise directories to install)
+#         add_key : to add list of keys (for example to test reproductibility: add_key mpp_rep)
+#         del_key : to del list of keys
+#     and for more details and options of makenemo see ./makenemo -h
+#     fcm_job.sh needs input: input_CONFIG_NAME and TOTAL NUMBER OF PROCS used
+# in param.cfg :
+#     EXE_DIR     : directory in which execute jobs (by default CONFIG_DIR)    
+#     FORCING_DIR : directory where to get input tar file 
+#     INPUT_DIR   : directory in which store input files
+#     TMPDIR      : temporary directory NEEDED ONLY FOR IBM machines (put EXP00 directory)
+#     OUTPUT_DIR  : directory in which store output files
+# in fcm_job.sh :
+#     IMPORTANT : control that name of tar file in FORCING directory
+#     is the same of that in input_REF_CONFIG.cfg, if not change one.
+#     change in "RUN OPA" part the command line (some examples are already written)
+
+SETTE_DIR=PATH OF SETTE
+
+echo "starting first test"
+sleep 3
 
 cd ${SETTE_DIR}
@@ -26 +55 @@
 . param.cfg
 . all_functions.sh
-set_namelist nn_it000 1
-set_namelist nn_itend 75
+set_namelist namelist nn_it000 1
+set_namelist namelist nn_itend 75
 cd ${SETTE_DIR}
 . ./fcm_job.sh input_GYRE.cfg 1
+echo "finished first test"
+echo "###################"
+sleep 3
 
+echo "starting second test"
+sleep 3
 cd ${SETTE_DIR}
 . ../CONFIG/makenemo -n ORCA2_LIM_1_2 add_key "key_mpp_mpi key_nproci=1 key_nprocj=2"
@@ -36 +70 @@
 . param.cfg
 . all_functions.sh
-set_namelist nn_it000 1
-set_namelist nn_itend 75
+set_namelist namelist nn_it000 1
+set_namelist namelist nn_itend 75
 cd ${SETTE_DIR}
 . ./fcm_job.sh input_ORCA2_LIM.cfg 2
+echo "finished second test"
+sleep 3