Changeset 3631
- Timestamp:
- 2012-11-22T15:21:22+01:00 (12 years ago)
- Location:
- branches/2012/dev_NOC_2012_rev3555/NEMOGCM
- Files:
-
- 11 edited
Legend:
- Unmodified
- Added
- Removed
-
branches/2012/dev_NOC_2012_rev3555/NEMOGCM/ARCH/NOC/arch-ALTIX_NAUTILUS_MPT.fcm
r3610 r3631 17 17 18 18 19 %NCDF_HOME /noc/users/jeff/packages/netcdf4/netcdf-4.1. 1/x86_64/intel10.120 %HDF5_HOME /noc/users/jeff/packages/hdf5/hdf5-1.8. 4-patch1/x86_64/intel10.119 %NCDF_HOME /noc/users/jeff/packages/netcdf4/netcdf-4.1.3/xSSE2/intel11.1 20 %HDF5_HOME /noc/users/jeff/packages/hdf5/hdf5-1.8.7/xSSE2/intel11.1 21 21 %NCDF_INC -I%NCDF_HOME/include -I%HDF5_HOME/include 22 22 # Note use of -Bstatic because the library root directories are not accessible to the back-end compute nodes 23 %NCDF_LIB -L%HDF5_HOME/lib -L%NCDF_HOME/lib -Bstatic -lnetcdf -lhdf5_fortran -lhdf5_hl -lhdf5 -Bdynamic -lz23 %NCDF_LIB -L%HDF5_HOME/lib -L%NCDF_HOME/lib -Bstatic -lnetcdff -lnetcdf -lhdf5_fortran -lhdf5_hl -lhdf5 -Bdynamic -lz 24 24 %FC ifort 25 %FCFLAGS -r8 -O3 - xT -ip -vec-report026 %FFLAGS -r8 -O3 - xT -ip -vec-report025 %FCFLAGS -r8 -O3 -fp-model precise -xT -ip -vec-report0 26 %FFLAGS -r8 -O3 -fp-model precise -xT -ip -vec-report0 27 27 %LD ifort 28 28 %FPPFLAGS -P -C -traditional -
branches/2012/dev_NOC_2012_rev3555/NEMOGCM/CONFIG/AMM12/EXP00/iodef.xml
r3126 r3631 55 55 56 56 <field id="empmr" description="Net Upward Water Flux" unit="kg/m2/s" /> 57 <field id="empsmr" description="concentration/dilution water flux" unit="kg/m2/s" />57 <field id="saltflx" description="Downward salt flux" unit="PSU/m2/s" /> 58 58 <field id="snowpre" description="Snow precipitation" unit="kg/m2/s" /> 59 59 <field id="runoffs" description="River Runoffs" unit="Kg/m2/s" /> … … 76 76 <field id="qsb_oce" description="Sensible Downward Heat Flux over open ocean" unit="W/m2" /> 77 77 <field id="qla_oce" description="Latent Downward Heat Flux over open ocean" unit="W/m2" /> 78 <field id="qhc_oce" description="Downward Heat Content of E-P over open ocean" unit="W/m2" /> 78 79 <field id="taum_oce" description="wind stress module over open ocean" unit="N/m2" /> 79 80 … … 104 105 <field id="v_imasstr" description="Sea-ice mass transport along j-axis" unit="kg/s" /> 105 106 107 <!-- available if not defined key_vvl --> 108 <field id="emp_x_sst" description="Concentration/Dilution term on SST" unit="kgC/m2/s" /> 109 <field id="emp_x_sss" description="Concentration/Dilution term on SSS" unit="kgPSU/m2/s" /> 106 110 <!-- available key_coupled --> 107 111 <field id="snow_ao_cea" description="Snow over ice-free ocean (cell average)" unit="kg/m2/s" /> … … 374 378 <field ref="empmr" name="sowaflup" /> 375 379 <field ref="qsr" name="soshfldo" /> 376 <field ref="empsmr" name="sowaflcd" />380 <field ref="saltflx" name="sosfldow" /> 377 381 <field ref="qt" name="sohefldo" /> 378 382 <field ref="mldr10_1" name="somxl010" /> … … 712 716 713 717 <field id="empmr" description="Net Upward Water Flux" unit="kg/m2/s" /> 714 <field id="empsmr" description="concentration/dilution water flux" unit="kg/m2/s" />718 <field id="saltflx" description="Downward salt flux" unit="PSU/m2/s" /> 715 719 <field id="snowpre" description="Snow precipitation" unit="kg/m2/s" /> 716 720 <field id="runoffs" description="River Runoffs" unit="Kg/m2/s" /> … … 733 737 <field id="qsb_oce" description="Sensible Downward Heat Flux over open ocean" unit="W/m2" /> 734 738 <field id="qla_oce" description="Latent Downward Heat Flux over open ocean" unit="W/m2" /> 739 <field id="qhc_oce" description="Downward Heat Content of E-P over open ocean" unit="W/m2" /> 735 740 <field id="taum_oce" description="wind stress module over open ocean" unit="N/m2" /> 736 741 … … 761 766 <field id="v_imasstr" description="Sea-ice mass transport along j-axis" unit="kg/s" /> 762 767 768 <!-- available if not defined key_vvl --> 769 <field id="emp_x_sst" description="Concentration/Dilution term on SST" unit="kgC/m2/s" /> 770 <field id="emp_x_sss" description="Concentration/Dilution term on SSS" unit="kgPSU/m2/s" /> 763 771 <!-- available key_coupled --> 764 772 <field id="snow_ao_cea" description="Snow over ice-free ocean (cell average)" unit="kg/m2/s" /> … … 938 946 <field ref="empmr" name="sowaflup" /> 939 947 <field ref="qsr" name="soshfldo" /> 940 <field ref="empsmr" name="sowaflcd" />948 <field ref="saltflx" name="sosfldow" /> 941 949 <field ref="qt" name="sohefldo" /> 942 950 <field ref="mldr10_1" name="somxl010" /> -
branches/2012/dev_NOC_2012_rev3555/NEMOGCM/CONFIG/AMM12_PISCES/EXP00/iodef.xml
r3295 r3631 55 55 56 56 <field id="empmr" description="Net Upward Water Flux" unit="kg/m2/s" /> 57 <field id="empsmr" description="concentration/dilution water flux" unit="kg/m2/s" />57 <field id="saltflx" description="Downward salt flux" unit="PSU/m2/s" /> 58 58 <field id="snowpre" description="Snow precipitation" unit="kg/m2/s" /> 59 59 <field id="runoffs" description="River Runoffs" unit="Kg/m2/s" /> … … 76 76 <field id="qsb_oce" description="Sensible Downward Heat Flux over open ocean" unit="W/m2" /> 77 77 <field id="qla_oce" description="Latent Downward Heat Flux over open ocean" unit="W/m2" /> 78 <field id="qhc_oce" description="Downward Heat Content of E-P over open ocean" unit="W/m2" /> 78 79 <field id="taum_oce" description="wind stress module over open ocean" unit="N/m2" /> 79 80 … … 104 105 <field id="v_imasstr" description="Sea-ice mass transport along j-axis" unit="kg/s" /> 105 106 107 <!-- available if not defined key_vvl --> 108 <field id="emp_x_sst" description="Concentration/Dilution term on SST" unit="kgC/m2/s" /> 109 <field id="emp_x_sss" description="Concentration/Dilution term on SSS" unit="kgPSU/m2/s" /> 106 110 <!-- available key_coupled --> 107 111 <field id="snow_ao_cea" description="Snow over ice-free ocean (cell average)" unit="kg/m2/s" /> … … 361 365 <field ref="empmr" name="sowaflup" /> 362 366 <field ref="qsr" name="soshfldo" /> 363 <field ref="empsmr" name="sowaflcd" />367 <field ref="saltflx" name="sosfldow" /> 364 368 <field ref="qt" name="sohefldo" /> 365 369 <field ref="mldr10_1" name="somxl010" /> -
branches/2012/dev_NOC_2012_rev3555/NEMOGCM/CONFIG/GYRE/EXP00/iodef.xml
r3294 r3631 55 55 56 56 <field id="empmr" description="Net Upward Water Flux" unit="kg/m2/s" /> 57 <field id="empsmr" description="concentration/dilution water flux" unit="kg/m2/s" />57 <field id="saltflx" description="Downward salt flux" unit="PSU/m2/s" /> 58 58 <field id="snowpre" description="Snow precipitation" unit="kg/m2/s" /> 59 59 <field id="runoffs" description="River Runoffs" unit="Kg/m2/s" /> … … 76 76 <field id="qsb_oce" description="Sensible Downward Heat Flux over open ocean" unit="W/m2" /> 77 77 <field id="qla_oce" description="Latent Downward Heat Flux over open ocean" unit="W/m2" /> 78 <field id="qhc_oce" description="Downward Heat Content of E-P over open ocean" unit="W/m2" /> 78 79 <field id="taum_oce" description="wind stress module over open ocean" unit="N/m2" /> 79 80 … … 104 105 <field id="v_imasstr" description="Sea-ice mass transport along j-axis" unit="kg/s" /> 105 106 106 <!-- available key_coupled --> 107 <!-- available if not defined key_vvl --> 108 <field id="emp_x_sst" description="Concentration/Dilution term on SST" unit="kgC/m2/s" /> 109 <field id="emp_x_sss" description="Concentration/Dilution term on SSS" unit="kgPSU/m2/s" /> 107 110 <field id="snow_ao_cea" description="Snow over ice-free ocean (cell average)" unit="kg/m2/s" /> 108 111 <field id="snow_ai_cea" description="Snow over sea-ice (cell average)" unit="kg/m2/s" /> … … 260 263 <field ref="empmr" name="sowaflup" /> 261 264 <field ref="qsr" name="soshfldo" /> 262 <field ref="empsmr" name="sowaflcd" /> 265 <field ref="saltflx" name="sosfldow" /> 266 <!-- available key_coupled --> 263 267 <field ref="qt" name="sohefldo" /> 264 268 <field ref="mldr10_1" name="somxl010" /> -
branches/2012/dev_NOC_2012_rev3555/NEMOGCM/CONFIG/GYRE_LOBSTER/EXP00/iodef.xml
r3294 r3631 55 55 56 56 <field id="empmr" description="Net Upward Water Flux" unit="kg/m2/s" /> 57 <field id=" empsmr" description="concentration/dilution water flux" unit="kg/m2/s" />57 <field id="saltflx" description="Downward salt flux" unit="PSU/m2/s" /> 58 58 <field id="snowpre" description="Snow precipitation" unit="kg/m2/s" /> 59 59 <field id="runoffs" description="River Runoffs" unit="Kg/m2/s" /> … … 76 76 <field id="qsb_oce" description="Sensible Downward Heat Flux over open ocean" unit="W/m2" /> 77 77 <field id="qla_oce" description="Latent Downward Heat Flux over open ocean" unit="W/m2" /> 78 <field id="qhc_oce" description="Downward Heat Content of E-P over open ocean" unit="W/m2" /> 78 79 <field id="taum_oce" description="wind stress module over open ocean" unit="N/m2" /> 79 80 … … 104 105 <field id="v_imasstr" description="Sea-ice mass transport along j-axis" unit="kg/s" /> 105 106 107 <!-- available if not defined key_vvl --> 108 <field id="emp_x_sst" description="Concentration/Dilution term on SST" unit="kgC/m2/s" /> 109 <field id="emp_x_sss" description="Concentration/Dilution term on SSS" unit="kgPSU/m2/s" /> 106 110 <!-- available key_coupled --> 107 111 <field id="snow_ao_cea" description="Snow over ice-free ocean (cell average)" unit="kg/m2/s" /> … … 300 304 <field ref="empmr" name="sowaflup" /> 301 305 <field ref="qsr" name="soshfldo" /> 302 <field ref=" empsmr" name="sowaflcd" />306 <field ref="saltflx" name="sosfldow" /> 303 307 <field ref="qt" name="sohefldo" /> 304 308 <field ref="mldr10_1" name="somxl010" /> -
branches/2012/dev_NOC_2012_rev3555/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/iodef.xml
r3625 r3631 377 377 <field ref="empmr" name="sowaflup" /> 378 378 <field ref="qsr" name="soshfldo" /> 379 <field ref="empsmr" name="sowaflcd" />379 <field ref="saltflx" name="sosfldow" /> 380 380 <field ref="qt" name="sohefldo" /> 381 381 <field ref="mldr10_1" name="somxl010" /> … … 784 784 785 785 <field id="empmr" description="Net Upward Water Flux" unit="kg/m2/s" /> 786 <field id="empsmr" description="concentration/dilution water flux" unit="kg/m2/s" />786 <field id="saltflx" description="Downward salt flux" unit="PSU/m2/s" /> 787 787 <field id="snowpre" description="Snow precipitation" unit="kg/m2/s" /> 788 788 <field id="runoffs" description="River Runoffs" unit="Kg/m2/s" /> … … 805 805 <field id="qsb_oce" description="Sensible Downward Heat Flux over open ocean" unit="W/m2" /> 806 806 <field id="qla_oce" description="Latent Downward Heat Flux over open ocean" unit="W/m2" /> 807 <field id="qhc_oce" description="Downward Heat Content of E-P over open ocean" unit="W/m2" /> 807 808 <field id="taum_oce" description="wind stress module over open ocean" unit="N/m2" /> 808 809 … … 833 834 <field id="v_imasstr" description="Sea-ice mass transport along j-axis" unit="kg/s" /> 834 835 836 <!-- available if not defined key_vvl --> 837 <field id="emp_x_sst" description="Concentration/Dilution term on SST" unit="kgC/m2/s" /> 838 <field id="emp_x_sss" description="Concentration/Dilution term on SSS" unit="kgPSU/m2/s" /> 835 839 <!-- available key_coupled --> 836 840 <field id="snow_ao_cea" description="Snow over ice-free ocean (cell average)" unit="kg/m2/s" /> -
branches/2012/dev_NOC_2012_rev3555/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/iodef.xml
r3295 r3631 55 55 56 56 <field id="empmr" description="Net Upward Water Flux" unit="kg/m2/s" /> 57 <field id="empsmr" description="concentration/dilution water flux" unit="kg/m2/s" />57 <field id="saltflx" description="Downward salt flux" unit="PSU/m2/s" /> 58 58 <field id="snowpre" description="Snow precipitation" unit="kg/m2/s" /> 59 59 <field id="runoffs" description="River Runoffs" unit="Kg/m2/s" /> … … 76 76 <field id="qsb_oce" description="Sensible Downward Heat Flux over open ocean" unit="W/m2" /> 77 77 <field id="qla_oce" description="Latent Downward Heat Flux over open ocean" unit="W/m2" /> 78 <field id="qhc_oce" description="Downward Heat Content of E-P over open ocean" unit="W/m2" /> 78 79 <field id="taum_oce" description="wind stress module over open ocean" unit="N/m2" /> 79 80 … … 104 105 <field id="v_imasstr" description="Sea-ice mass transport along j-axis" unit="kg/s" /> 105 106 107 <!-- available if not defined key_vvl --> 108 <field id="emp_x_sst" description="Concentration/Dilution term on SST" unit="kgC/m2/s" /> 109 <field id="emp_x_sss" description="Concentration/Dilution term on SSS" unit="kgPSU/m2/s" /> 106 110 <!-- available key_coupled --> 107 111 <field id="snow_ao_cea" description="Snow over ice-free ocean (cell average)" unit="kg/m2/s" /> … … 361 365 <field ref="empmr" name="sowaflup" /> 362 366 <field ref="qsr" name="soshfldo" /> 363 <field ref="empsmr" name="sowaflcd" />367 <field ref="saltflx" name="sosfldow" /> 364 368 <field ref="qt" name="sohefldo" /> 365 369 <field ref="mldr10_1" name="somxl010" /> -
branches/2012/dev_NOC_2012_rev3555/NEMOGCM/CONFIG/ORCA2_SAS_LIM/EXP00/iodef.xml
r3331 r3631 124 124 125 125 <field id="empmr" description="Net Upward Water Flux" unit="kg/m2/s" /> 126 <field id="empsmr" description="concentration/dilution water flux" unit="kg/m2/s" />126 <field id="saltflx" description="Downward salt flux" unit="PSU/m2/s" /> 127 127 <field id="snowpre" description="Snow precipitation" unit="kg/m2/s" /> 128 128 <field id="runoffs" description="River Runoffs" unit="Kg/m2/s" /> … … 145 145 <field id="qsb_oce" description="Sensible Downward Heat Flux over open ocean" unit="W/m2" /> 146 146 <field id="qla_oce" description="Latent Downward Heat Flux over open ocean" unit="W/m2" /> 147 <field id="qhc_oce" description="Downward Heat Content of E-P over open ocean" unit="W/m2" /> 147 148 <field id="taum_oce" description="wind stress module over open ocean" unit="N/m2" /> 148 149 … … 173 174 <field id="v_imasstr" description="Sea-ice mass transport along j-axis" unit="kg/s" /> 174 175 176 <!-- available if not defined key_vvl --> 177 <field id="emp_x_sst" description="Concentration/Dilution term on SST" unit="kgC/m2/s" /> 178 <field id="emp_x_sss" description="Concentration/Dilution term on SSS" unit="kgPSU/m2/s" /> 175 179 <!-- available key_coupled --> 176 180 <field id="snow_ao_cea" description="Snow over ice-free ocean (cell average)" unit="kg/m2/s" /> … … 373 377 <field ref="empmr" name="sowaflup" /> 374 378 <field ref="qsr" name="soshfldo" /> 375 <field ref="empsmr" name="sowaflcd" />379 <field ref="saltflx" name="sosfldow" /> 376 380 <field ref="qt" name="sohefldo" /> 377 381 <field ref="mldr10_1" name="somxl010" /> … … 780 784 781 785 <field id="empmr" description="Net Upward Water Flux" unit="kg/m2/s" /> 782 <field id="empsmr" description="concentration/dilution water flux" unit="kg/m2/s" />786 <field id="saltflx" description="Downward salt flux" unit="PSU/m2/s" /> 783 787 <field id="snowpre" description="Snow precipitation" unit="kg/m2/s" /> 784 788 <field id="runoffs" description="River Runoffs" unit="Kg/m2/s" /> … … 801 805 <field id="qsb_oce" description="Sensible Downward Heat Flux over open ocean" unit="W/m2" /> 802 806 <field id="qla_oce" description="Latent Downward Heat Flux over open ocean" unit="W/m2" /> 807 <field id="qhc_oce" description="Downward Heat Content of E-P over open ocean" unit="W/m2" /> 803 808 <field id="taum_oce" description="wind stress module over open ocean" unit="N/m2" /> 804 809 … … 829 834 <field id="v_imasstr" description="Sea-ice mass transport along j-axis" unit="kg/s" /> 830 835 836 <!-- available if not defined key_vvl --> 837 <field id="emp_x_sst" description="Concentration/Dilution term on SST" unit="kgC/m2/s" /> 838 <field id="emp_x_sss" description="Concentration/Dilution term on SSS" unit="kgPSU/m2/s" /> 831 839 <!-- available key_coupled --> 832 840 <field id="snow_ao_cea" description="Snow over ice-free ocean (cell average)" unit="kg/m2/s" /> … … 1016 1024 <field ref="empmr" name="sowaflup" /> 1017 1025 <field ref="qsr" name="soshfldo" /> 1018 <field ref="empsmr" name="sowaflcd" />1026 <field ref="saltflx" name="sosfldow" /> 1019 1027 <field ref="qt" name="sohefldo" /> 1020 1028 <field ref="mldr10_1" name="somxl010" /> -
branches/2012/dev_NOC_2012_rev3555/NEMOGCM/NEMO/OPA_SRC/ICB/icbthm.F90
r3614 r3631 207 207 IF(.NOT. ln_passive_mode ) THEN 208 208 emp (:,:) = emp (:,:) - berg_grid%floating_melt(:,:) 209 emps(:,:) = emps(:,:) - berg_grid%floating_melt(:,:)210 209 !! qns (:,:) = qns (:,:) + berg_grid%calving_hflx (:,:) !!gm heat flux not yet properly coded ==>> need it, SOLVE that! 211 210 ENDIF -
branches/2012/dev_NOC_2012_rev3555/NEMOGCM/SETTE/BATCH_TEMPLATE/batch-ALTIX_NAUTILUS_MPT
r3294 r3631 28 28 module load mpt/2.03 29 29 export MPT_HOME=/opt/sgi/mpt/mpt-2.03 30 export NC4_HOME=/ sata/working/jeff/packages/netcdf4/netcdf-4.1.1/altix/intel10.131 export HD5_HOME=/ sata/working/jeff/packages/hdf5/hdf5-1.8.4-patch1/altix/intel10.132 export IFT_HOME=/sw/Intel/fce/1 0.1.02133 export SVN_HOME=/ fibre/acc/UTILS/svn/v1.5/svn30 export NC4_HOME=/noc/users/jeff/packages/netcdf4/netcdf-4.1.3/xSSE2/intel11.1 31 export HD5_HOME=/noc/users/jeff/packages/hdf5/hdf5-1.8.7/xSSE2/intel11.1 32 export IFT_HOME=/sw/Intel/fce/11.1.072 33 export SVN_HOME=/nerc/packages/subversion/v1.7.2 34 34 # 35 35 echo Running on host `hostname` -
branches/2012/dev_NOC_2012_rev3555/NEMOGCM/SETTE/iodef_sette.xml
r3294 r3631 55 55 56 56 <field id="empmr" description="Net Upward Water Flux" unit="kg/m2/s" /> 57 <field id=" empsmr" description="concentration/dilution water flux" unit="kg/m2/s" />57 <field id="saltflx" description="Downward water flux" unit="PSU/m2/s" /> 58 58 <field id="snowpre" description="Snow precipitation" unit="kg/m2/s" /> 59 59 <field id="runoffs" description="River Runoffs" unit="Kg/m2/s" /> … … 76 76 <field id="qsb_oce" description="Sensible Downward Heat Flux over open ocean" unit="W/m2" /> 77 77 <field id="qla_oce" description="Latent Downward Heat Flux over open ocean" unit="W/m2" /> 78 <field id="qhc_oce" description="Downward Heat Content of E-P over open ocean" unit="W/m2" /> 78 79 <field id="taum_oce" description="wind stress module over open ocean" unit="N/m2" /> 79 80 … … 104 105 <field id="v_imasstr" description="Sea-ice mass transport along j-axis" unit="kg/s" /> 105 106 107 <!-- available if not defined key_vvl --> 108 <field id="emp_x_sst" description="Concentration/Dilution term on SST" unit="kgC/m2/s" /> 109 <field id="emp_x_sss" description="Concentration/Dilution term on SSS" unit="kgPSU/m2/s" /> 106 110 <!-- available key_coupled --> 107 111 <field id="snow_ao_cea" description="Snow over ice-free ocean (cell average)" unit="kg/m2/s" /> … … 227 231 <field id="SFe" description="Small iron particles Concentration" unit="molFe/L" /> 228 232 <field id="DFe" description="Diatoms iron Concentration" unit="molFe/L" /> 229 <field id="DSi" description="Sinking biogenic Silicate Concentration" unit="molC/L" /> 233 <field id="DSi" description="Diatoms Silicate Concentration" unit="molC/L" /> 234 <field id="GSi" description="Sinking biogenic Silicate Concentration" unit="molC/L" /> 230 235 <field id="NFe" description="Nano iron Concentration" unit="molC/L" /> 231 236 <field id="NCHL" description="Nano chlorophyl Concentration" unit="gChl/L" />
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