Changeset 3757
- Timestamp:
- 2013-01-20T13:40:32+01:00 (10 years ago)
- Location:
- branches/2012/dev_MERGE_2012/NEMOGCM
- Files:
-
- 4 edited
-
CONFIG/GYRE_PISCES/EXP00/iodef.xml (modified) (1 diff)
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CONFIG/GYRE_PISCES/EXP00/namelist_pisces (modified) (6 diffs)
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CONFIG/SHARED/field_def.xml (modified) (4 diffs)
-
NEMO/TOP_SRC/PISCES/trcini_pisces.F90 (modified) (1 diff)
Legend:
- Unmodified
- Added
- Removed
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branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/iodef.xml
r3715 r3757 103 103 <field field_ref="TPHYTOT" /> 104 104 <field field_ref="TZOOTOT" /> 105 <field field_ref="TDETDOM" />106 105 <field field_ref="SEDPOC" /> 107 106 </file> -
branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/namelist_pisces
r3464 r3757 14 14 &namlobphy ! biological parameters for phytoplankton 15 15 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 16 apmin = 0. ! fixed phytoplancton concentration [mmol/m3]17 16 tmumax = 1.21e-5 ! maximal phytoplankton growth rate [s-1] 18 17 rgamma = 0.05 ! phytoplankton exudation fraction [%] 19 18 fphylab = 0.75 ! NH4 fraction of phytoplankton exsudation 20 tmmaxp = 0.0 ! maximal phytoplancton mortality rate [s-1]21 19 tmminp = 5.8e-7 ! minimal phytoplancton mortality rate [0.05/86400 s-1=20 days] 22 rcchl = 60. ! Carbone/Chlorophyl ratio [mgC.mgChla-1]23 20 aki = 33. ! light photosynthesis half saturation constant[W/m2] 24 toptp = 0. ! optimal photosynthesis temperature25 21 / 26 22 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 27 23 &namlobnut ! biological parameters for nutrients 28 24 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 29 anmin = 0. ! minimum nutrients concentration [mmol/m3]30 25 akno3 = 0.7 ! nitrate limitation half-saturation value [mmol/m3] 31 26 aknh4 = 0.001 ! ammonium limitation half-saturation value [mmol/m3] … … 36 31 &namlobzoo ! biological parameters for zooplankton 37 32 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 38 azmin = 0. ! minimum zooplancton concentration [mmol/m3]39 eggzoo = 0.0 ! minimum for zooplankton concentration, egg effect [mmolN.m-3]40 rgz = 0. ! ivlev coeff for zoo mortality41 33 rppz = 0.8 ! zooplankton nominal preference for phytoplancton food [%] 42 34 taus = 9.26E-6 ! specific zooplankton maximal grazing rate [s-1] … … 48 40 fzoolab = 0.5 ! NH4 fraction of zooplankton excretion 49 41 fdbod = 0.5 ! zooplankton mortality fraction that goes to detritus 50 tmmaxz = 0. ! maximal zooplankton mortality rate51 42 tmminz = 2.31e-6 ! minimal zooplankton mortality rate [(mmolN/m3)-1 d-1] 52 43 / … … 54 45 &namlobdet ! biological parameters for detritus 55 46 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 56 admin = 0. ! minimum detritus concentration [mmol/m3]57 47 taudn = 5.80e-7 ! detritus breakdown rate [0.1/86400 s-1=10 days] 58 48 fdetlab = 0. ! NH4 fraction of detritus dissolution 59 vsed = 3.47e-5 ! detritus sedimentation speed [m/s]60 49 / 61 50 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' … … 68 57 &namlobsed ! parameters from aphotic layers to sediment 69 58 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 70 sedlam = 3.86e-7 ! time coefficient of POC remineralization in sediments [s-1] 71 sedlostpoc = 0. ! mass of POC lost in sediments 59 sedlam = 3.86e-7 ! time coefficient of POC remineralization in sediments [s-1] 60 sedlostpoc = 0. ! mass of POC lost in sediments 61 vsed = 3.47e-5 ! detritus sedimentation speed [m/s] 62 xhr = -0.858 ! coeff for martin''s remineralisation profile 72 63 / 73 64 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 74 65 &namlobrat ! general coefficients 75 66 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 67 rcchl = 60. ! Carbone/Chlorophyl ratio [mgC.mgChla-1] 76 68 redf = 6.56 ! redfield ratio (C:N) for phyto 77 69 reddom = 6.56 ! redfield ratio (C:N) for DOM 78 slopet = 0. ! van t Hoff "coefficient"79 tmaxr = 0. ! maximal damping coeff under euphotic layer80 tminr = 5.80e-7 ! minimal damping coeff under euphotic layer81 xhr = -0.858 ! coeff for martin''s remineralisation profile82 filmax = 0. ! ????83 toptgz = 0. ! ????84 tmaxgz = 0. ! ????85 anumin = 0. ! ????86 afdmin = 0. ! ????87 70 / 88 71 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' … … 98 81 / 99 82 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 100 &nam lobdia ! additional 2D/3D tracers diagnostics83 &nampisdia ! additional 2D/3D tracers diagnostics 101 84 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 102 85 ! ! name ! title of ! units ! 103 86 ! ! ! the field ! ! 104 lobdia2d(1) = 'TNO3PHY' , 'TNO3PHY', '-'105 lobdia2d(2) = 'TNH4PHY' , 'TNH4PHY', '-'106 lobdia2d(3) = 'TPHYDOM' , 'TPHYDOM', '-'107 lobdia2d(4) = 'TPHYNH4' , 'TPHYNH4', '-'108 lobdia2d(5) = 'TPHYZOO' , 'TPHYZOO', '-'109 lobdia2d(6) = 'TPHYDET' , 'TPHYDET', '-'110 lobdia2d(7) = 'TDETZOO' , 'TDETZOO', '-'111 lobdia2d(8) = 'TDETSED' , 'TDETSED', '-'112 lobdia2d(9) = 'TZOODET' , 'TZOODET', '-'113 lobdia2d(10) = 'TZOOBOD' , 'TZOOBOD', '-'114 lobdia2d(11) = 'TZOONH4' , 'TZOONH4', '-'115 lobdia2d(12) = 'TZOODOM' , 'TZOODOM', '-'116 lobdia2d(13) = 'TNH4NO3' , 'TNH4NO3', '-'117 lobdia2d(14) = 'TDOMNH4' , 'TDOMNH4', '-'118 lobdia2d(15) = 'TDETNH4' , 'TDETNH4', '-'119 lobdia2d(16) = 'TPHYTOT' , 'TPHYTOT', '-'120 lobdia2d(17) = 'TZOOTOT' , 'TZOOTOT', '-'121 lobdia2d(18) = 'TDETDOM' , 'TDETDOM', '-'122 lobdia2d(19) = 'SEDPOC ' , 'SEDPOC ', '-'123 lobdia3d(1) = 'FNO3PHY' , 'FNO3PHY', '-'124 lobdia3d(2) = 'FNH4PHY' , 'FNH4PHY', '-'125 lobdia3d(3) = 'FNH4NO3' , 'FNH4NO3', '-'87 pisdia2d(1) = 'TNO3PHY' , 'TNO3PHY', '-' 88 pisdia2d(2) = 'TNH4PHY' , 'TNH4PHY', '-' 89 pisdia2d(3) = 'TPHYDOM' , 'TPHYDOM', '-' 90 pisdia2d(4) = 'TPHYNH4' , 'TPHYNH4', '-' 91 pisdia2d(5) = 'TPHYZOO' , 'TPHYZOO', '-' 92 pisdia2d(6) = 'TPHYDET' , 'TPHYDET', '-' 93 pisdia2d(7) = 'TDETZOO' , 'TDETZOO', '-' 94 pisdia2d(8) = 'TDETSED' , 'TDETSED', '-' 95 pisdia2d(9) = 'TZOODET' , 'TZOODET', '-' 96 pisdia2d(10) = 'TZOOBOD' , 'TZOOBOD', '-' 97 pisdia2d(11) = 'TZOONH4' , 'TZOONH4', '-' 98 pisdia2d(12) = 'TZOODOM' , 'TZOODOM', '-' 99 pisdia2d(13) = 'TNH4NO3' , 'TNH4NO3', '-' 100 pisdia2d(14) = 'TDOMNH4' , 'TDOMNH4', '-' 101 pisdia2d(15) = 'TDETNH4' , 'TDETNH4', '-' 102 pisdia2d(16) = 'TPHYTOT' , 'TPHYTOT', '-' 103 pisdia2d(17) = 'TZOOTOT' , 'TZOOTOT', '-' 104 pisdia2d(18) = 'TDETDOM' , 'TDETDOM', '-' 105 pisdia2d(19) = 'SEDPOC ' , 'SEDPOC ', '-' 106 pisdia3d(1) = 'FNO3PHY' , 'FNO3PHY', '-' 107 pisdia3d(2) = 'FNH4PHY' , 'FNH4PHY', '-' 108 pisdia3d(3) = 'FNH4NO3' , 'FNH4NO3', '-' 126 109 / 127 110 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 128 &nam lobdbi ! biological diagnostics trends111 &nampisdbi ! biological diagnostics trends 129 112 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 130 113 ! ! 2D bio diagnostics units : mmole/m2/s ("key_trdmld_trc") 131 114 ! ! name ! title of the field ! units ! 132 lobdiabio(1) = 'NO3PHY' , 'Flux from NO3 to PHY ', 'mmole/m3/s'133 lobdiabio(2) = 'NH4PHY' , 'Flux from NH4 to PHY ', 'mmole/m3/s'134 lobdiabio(3) = 'PHYNH4' , 'Flux from PHY to NH4 ', 'mmole/m3/s'135 lobdiabio(4) = 'PHYDOM' , 'Flux from PHY to DOM ', 'mmole/m3/s'136 lobdiabio(5) = 'PHYZOO' , 'Flux from PHY to ZOO ', 'mmole/m3/s'137 lobdiabio(6) = 'PHYDET' , 'Flux from PHY to DET ', 'mmole/m3/s'138 lobdiabio(7) = 'DETZOO' , 'Flux from DET to ZOO ', 'mmole/m3/s'139 lobdiabio(8) = 'DETSED' , 'Flux from DET to SED ', 'mmole/m3/s'140 lobdiabio(9) = 'ZOODET' , 'Flux from ZOO to DET ', 'mmole/m3/s'141 lobdiabio(10) = 'ZOOBOD' , 'Zooplankton closure ', 'mmole/m3/s'142 lobdiabio(11) = 'ZOONH4' , 'Flux from ZOO to NH4 ', 'mmole/m3/s'143 lobdiabio(12) = 'ZOODOM' , 'Flux from ZOO to DOM ', 'mmole/m3/s'144 lobdiabio(13) = 'NH4NO3' , 'Flux from NH4 to NO3 ', 'mmole/m3/s'145 lobdiabio(14) = 'DOMNH4' , 'Flux from DOM to NH4 ', 'mmole/m3/s'146 lobdiabio(15) = 'DETNH4' , 'Flux from DET to NH4 ', 'mmole/m3/s'147 lobdiabio(16) = 'DETDOM' , 'Flux from DET to DOM ', 'mmole/m3/s'148 lobdiabio(17) = 'SEDNO3' , 'NO3 remineralization from SED', 'mmole/m3/s'115 pisdiabio(1) = 'NO3PHY' , 'Flux from NO3 to PHY ', 'mmole/m3/s' 116 pisdiabio(2) = 'NH4PHY' , 'Flux from NH4 to PHY ', 'mmole/m3/s' 117 pisdiabio(3) = 'PHYNH4' , 'Flux from PHY to NH4 ', 'mmole/m3/s' 118 pisdiabio(4) = 'PHYDOM' , 'Flux from PHY to DOM ', 'mmole/m3/s' 119 pisdiabio(5) = 'PHYZOO' , 'Flux from PHY to ZOO ', 'mmole/m3/s' 120 pisdiabio(6) = 'PHYDET' , 'Flux from PHY to DET ', 'mmole/m3/s' 121 pisdiabio(7) = 'DETZOO' , 'Flux from DET to ZOO ', 'mmole/m3/s' 122 pisdiabio(8) = 'DETSED' , 'Flux from DET to SED ', 'mmole/m3/s' 123 pisdiabio(9) = 'ZOODET' , 'Flux from ZOO to DET ', 'mmole/m3/s' 124 pisdiabio(10) = 'ZOOBOD' , 'Zooplankton closure ', 'mmole/m3/s' 125 pisdiabio(11) = 'ZOONH4' , 'Flux from ZOO to NH4 ', 'mmole/m3/s' 126 pisdiabio(12) = 'ZOODOM' , 'Flux from ZOO to DOM ', 'mmole/m3/s' 127 pisdiabio(13) = 'NH4NO3' , 'Flux from NH4 to NO3 ', 'mmole/m3/s' 128 pisdiabio(14) = 'DOMNH4' , 'Flux from DOM to NH4 ', 'mmole/m3/s' 129 pisdiabio(15) = 'DETNH4' , 'Flux from DET to NH4 ', 'mmole/m3/s' 130 pisdiabio(16) = 'DETDOM' , 'Flux from DET to DOM ', 'mmole/m3/s' 131 pisdiabio(17) = 'SEDNO3' , 'NO3 remineralization from SED', 'mmole/m3/s' 149 132 / -
branches/2012/dev_MERGE_2012/NEMOGCM/CONFIG/SHARED/field_def.xml
r3752 r3757 232 232 <field id="POC" long_name="Small organic carbon Concentration" unit="mmol/m3" /> 233 233 <field id="Si" long_name="Silicate Concentration" unit="mmol/m3" /> 234 <field id="PHY" long_name=" Nanophytoplankton Concentration"unit="mmol/m3" />235 <field id="ZOO" long_name=" Microzooplankton Concentration"unit="mmol/m3" />234 <field id="PHY" long_name="(Nano)Phytoplankton Concentration" unit="mmol/m3" /> 235 <field id="ZOO" long_name="(Micro)Zooplankton Concentration" unit="mmol/m3" /> 236 236 <field id="DOC" long_name="Dissolved organic Concentration" unit="mmol/m3" /> 237 237 <field id="PHY2" long_name="Diatoms Concentration" unit="mmol/m3" /> … … 247 247 <field id="NCHL" long_name="Nano chlorophyl Concentration" unit="mg/m3" /> 248 248 <field id="DCHL" long_name="Diatoms chlorophyl Concentration" unit="mg/m3" /> 249 <field id="NO3" long_name="Nitrate s Concentration"unit="mmol/m3" />249 <field id="NO3" long_name="Nitrate Concentration" unit="mmol/m3" /> 250 250 <field id="NH4" long_name="Ammonium Concentration" unit="mmol/m3" /> 251 251 252 <field id="DET" long_name="Detritus" unit="mmole-N/m3" /> 253 <field id="ZOO" long_name="Zooplankton Concentration" unit="mmole-N/m3" /> 254 <field id="PHY" long_name="Phytoplankton Concentration" unit="mmole-N/m3" /> 255 <field id="NO3" long_name="Nitrate Concentration" unit="mmole-N/m3" /> 256 <field id="NH4" long_name="Ammonium Concentration" unit="mmole-N/m3" /> 257 <field id="DOM" long_name="Dissolved Organic Matter" unit="mmole-N/m3" /> 252 <field id="DET" long_name="Detritus" unit="mmol-N/m3" /> 253 <field id="DOM" long_name="Dissolved Organic Matter" unit="mmol-N/m3" /> 258 254 259 255 <field id="CFC11" long_name="CFC-11 Concentration" unit="umol/L" /> … … 328 324 <field id="TPHYDET" long_name="TPHYDET" unit="-" /> 329 325 <field id="TDETZOO" long_name="TDETZOO" unit="-" /> 330 <field id="TDETSED" long_name="TDETSED" unit="-" />331 326 <field id="TZOODET" long_name="TZOODET" unit="-" /> 332 327 <field id="TZOOBOD" long_name="TZOOBOD" unit="-" /> … … 338 333 <field id="TPHYTOT" long_name="TPHYTOT" unit="-" /> 339 334 <field id="TZOOTOT" long_name="TZOOTOT" unit="-" /> 340 <field id="TDETDOM" long_name="TDETDOM" unit="-" />341 335 <field id="SEDPOC" long_name="SEDPOC" unit="-" /> 336 <field id="TDETSED" long_name="TDETSED" unit="-" /> 342 337 343 338 <field id="qtrCFC11" long_name="Air-sea flux of CFC-11" unit="mol/m2/s" /> -
branches/2012/dev_MERGE_2012/NEMOGCM/NEMO/TOP_SRC/PISCES/trcini_pisces.F90
r3680 r3757 43 43 !!---------------------------------------------------------------------- 44 44 45 IF( lk_p isces) THEN ; CALL p4z_ini ! PISCES46 ELSE 45 IF( lk_p4z ) THEN ; CALL p4z_ini ! PISCES 46 ELSE ; CALL p2z_ini ! LOBSTER 47 47 ENDIF 48 48
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