Changeset 4044
- Timestamp:
- 2013-09-25T16:33:22+02:00 (11 years ago)
- Location:
- branches/2013/dev_r3853_CNRS9_ConfSetting
- Files:
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- 3 added
- 1 deleted
- 27 edited
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DOC/TexFiles/Namelist/namcfg (deleted)
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NEMOGCM/CONFIG/AMM12/EXP00/namelist_cfg (modified) (2 diffs)
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NEMOGCM/CONFIG/GYRE/EXP00/namelist_cfg (modified) (1 diff)
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NEMOGCM/CONFIG/GYRE_BFM/EXP00/namelist_cfg (modified) (1 diff)
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NEMOGCM/CONFIG/GYRE_PISCES/EXP00/namelist_cfg (modified) (1 diff)
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NEMOGCM/CONFIG/ORCA2_LIM/EXP00/1_namelist_cfg (modified) (3 diffs)
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NEMOGCM/CONFIG/ORCA2_LIM/EXP00/iodef.xml (added)
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NEMOGCM/CONFIG/ORCA2_LIM/EXP00/namelist_cfg (modified) (1 diff)
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NEMOGCM/CONFIG/ORCA2_LIM_CFC_C14b/EXP00/namelist_cfg (modified) (1 diff)
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NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_cfg (modified) (1 diff)
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NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_cfg (modified) (1 diff)
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NEMOGCM/CONFIG/ORCA2_SAS_LIM/EXP00/namelist_cfg (modified) (4 diffs)
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NEMOGCM/CONFIG/SHARED/1_namelist_ref (modified) (3 diffs)
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NEMOGCM/CONFIG/SHARED/namelist_ref (modified) (3 diffs)
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NEMOGCM/CONFIG/SHARED/namelist_top_ref (modified) (1 diff)
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NEMOGCM/CONFIG/cfg.txt (modified) (1 diff)
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NEMOGCM/NEMO/NST_SRC/agrif_user.F90 (modified) (1 diff)
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NEMOGCM/NEMO/OPA_SRC/DOM/domain.F90 (modified) (1 diff)
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NEMOGCM/SETTE/BATCH_TEMPLATE/batch-macport_osx (added)
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NEMOGCM/SETTE/all_functions.sh (modified) (4 diffs)
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NEMOGCM/SETTE/input_AMM12.cfg (modified) (1 diff)
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NEMOGCM/SETTE/input_ORCA2_LIM.cfg (modified) (1 diff)
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NEMOGCM/SETTE/input_ORCA2_LIM_AGRIF.cfg (modified) (1 diff)
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NEMOGCM/SETTE/input_ORCA2_LIM_PISCES.cfg (modified) (1 diff)
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NEMOGCM/SETTE/input_ORCA2_OFF_PISCES.cfg (modified) (1 diff)
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NEMOGCM/SETTE/input_SAS.cfg (added)
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NEMOGCM/SETTE/iodef_sette.xml (modified) (1 diff)
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NEMOGCM/SETTE/param.cfg (modified) (2 diffs)
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NEMOGCM/SETTE/prepare_job.sh (modified) (2 diffs)
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NEMOGCM/SETTE/sette.sh (modified) (30 diffs)
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NEMOGCM/SETTE/sette_beginner.sh (modified) (5 diffs)
Legend:
- Unmodified
- Added
- Removed
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branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/AMM12/EXP00/namelist_cfg
r3993 r4044 6 6 !----------------------------------------------------------------------- 7 7 cn_exp = "AMM12" ! experience name 8 nn_it000 = 1 ! first time step 8 9 nn_itend = 2880 ! last time step (std 1 day = 288) 9 10 nn_date0 = 20070101 ! date at nit_0000 (format yyyymmdd) used if ln_rstart=F or (ln_rstart=T and nn_rstctl=0 or 1) … … 11 12 ln_rstart = .true. ! start from rest (F) or from a restart file (T) 12 13 cn_ocerst_in = "amm12_restart_oce" ! suffix of ocean restart name (input) 13 cn_ocerst_out = " AMM12.restart.out" ! suffix of ocean restart name (input)14 cn_ocerst_out = "restart_oce_out" ! suffix of ocean restart name (input) 14 15 nn_istate = 1 ! output the initial state (1) or not (0) 15 16 nn_stock = 2880 ! frequency of creation of a restart file (modulo referenced to 1) -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/GYRE/EXP00/namelist_cfg
r3993 r4044 6 6 !----------------------------------------------------------------------- 7 7 cn_exp = "GYRE" ! experience name 8 nn_it000 = 1 ! first time step 8 9 nn_itend = 4320 ! last time step 9 10 nn_leapy = 30 ! Leap year calendar (1) or not (0) -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/GYRE_BFM/EXP00/namelist_cfg
r3993 r4044 13 13 !----------------------------------------------------------------------- 14 14 cn_exp = "GYRE" ! experience name 15 nn_it000 = 1 ! first time step 15 16 nn_itend = 4320 ! last time step 16 17 nn_leapy = 30 ! Leap year calendar (1) or not (0) -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/GYRE_PISCES/EXP00/namelist_cfg
r3993 r4044 6 6 !----------------------------------------------------------------------- 7 7 cn_exp = "GYRE" ! experience name 8 nn_it000 = 1 ! first time step 8 9 nn_itend = 4320 ! last time step 9 10 nn_leapy = 30 ! Leap year calendar (1) or not (0) -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/1_namelist_cfg
r4018 r4044 14 14 &namcfg ! parameters of the configuration 15 15 !----------------------------------------------------------------------- 16 cp_cfg = "default" 16 cp_cfg = "default" ! name of the configuration 17 17 jp_cfg = -1 ! resolution of the configuration 18 18 jpidta = 182 ! 1st lateral dimension ( >= jpi ) … … 24 24 jpjzoom = 1 ! in data domain indices 25 25 jperio = 0 ! lateral cond. type (between 0 and 6) 26 / 27 !----------------------------------------------------------------------- 28 &namzgr ! vertical coordinate 29 !----------------------------------------------------------------------- 30 / 31 !----------------------------------------------------------------------- 32 &namdom ! space and time domain (bathymetry, mesh, timestep) 33 !----------------------------------------------------------------------- 26 34 jphgr_msh = 0 ! type of horizontal mesh 27 35 ppglam0 = 999999.0 ! longitude of first raw and column T-point (jphgr_msh = 1) … … 42 50 ppkth2 = 999999. ! 43 51 ppacr2 = 999999. ! 44 /45 !-----------------------------------------------------------------------46 &namzgr ! vertical coordinate47 !-----------------------------------------------------------------------48 /49 !-----------------------------------------------------------------------50 &namdom ! space and time domain (bathymetry, mesh, timestep)51 !-----------------------------------------------------------------------52 52 rn_rdt = 2880. ! time step for the dynamics (and tracer if nn_acc=0) 53 53 rn_rdtmin = 14400. ! minimum time step on tracers (used if nn_acc=1) -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM/EXP00/namelist_cfg
r3993 r4044 6 6 &namrun ! parameters of the run 7 7 !----------------------------------------------------------------------- 8 nn_it000 = 1 ! first time step 8 9 nn_itend = 100 ! last time step (std 5475) 9 10 nn_write = 10 ! frequency of write in the output file (modulo referenced to nn_it000) -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_CFC_C14b/EXP00/namelist_cfg
r3993 r4044 13 13 !----------------------------------------------------------------------- 14 14 cn_exp = "ORCA2C" ! experience name 15 nn_it000 = 1 ! first time step 15 16 nn_date0 = 19600101 16 17 / -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_LIM_PISCES/EXP00/namelist_cfg
r3993 r4044 6 6 &namrun ! parameters of the run 7 7 !----------------------------------------------------------------------- 8 nn_itend = 100 ! last time step (std 5475) 9 nn_write = 10 ! frequency of write in the output file (modulo referenced to nn_it000) 8 nn_it000 = 1 ! first time step 9 nn_itend = 100 ! last time step (std 5475) 10 nn_write = 10 ! frequency of write in the output file (modulo referenced to nn_it000) 10 11 / 11 12 !----------------------------------------------------------------------- -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_OFF_PISCES/EXP00/namelist_cfg
r3993 r4044 6 6 !----------------------------------------------------------------------- 7 7 cn_exp = "PISCES" ! experience name 8 nn_itend = 100 ! last time step (std 5475) 9 nn_stock = 1460 ! frequency of creation of a restart file (modulo referenced to 1) 10 nn_write = 100 ! frequency of write in the output file (modulo referenced to nn_it000) 8 nn_it000 = 1 ! first time step 9 nn_itend = 100 ! last time step (std 5475) 10 nn_stock = 1460 ! frequency of creation of a restart file (modulo referenced to 1) 11 nn_write = 100 ! frequency of write in the output file (modulo referenced to nn_it000) 11 12 / 12 13 !----------------------------------------------------------------------- -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/ORCA2_SAS_LIM/EXP00/namelist_cfg
r3993 r4044 6 6 !----------------------------------------------------------------------- 7 7 cn_exp = "ORCA2_SAS" ! experience name 8 nn_it000 = 1 ! first time step9 nn_itend = 100 ! last time step (std 5475)8 nn_it000 = 1 ! first time step 9 nn_itend = 100 ! last time step (std 5475) 10 10 / 11 11 !----------------------------------------------------------------------- … … 50 50 / 51 51 !----------------------------------------------------------------------- 52 &namctl ! Control prints & Benchmark 53 !----------------------------------------------------------------------- 54 / 55 !----------------------------------------------------------------------- 52 56 &namsbc ! Surface Boundary Condition (surface module) 53 57 !----------------------------------------------------------------------- … … 77 81 !----------------------------------------------------------------------- 78 82 / 79 80 83 !----------------------------------------------------------------------- 81 84 &nameos ! ocean physical parameters … … 86 89 !----------------------------------------------------------------------- 87 90 / 88 !-----------------------------------------------------------------------89 &namctl ! Control prints & Benchmark90 !-----------------------------------------------------------------------91 / -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/SHARED/1_namelist_ref
r4025 r4044 11 11 !! 8 - Verical physics (namzdf, namzdf_ric, namzdf_tke, namzdf_kpp, namzdf_ddm, namzdf_tmx) 12 12 !! 9 - diagnostics (namnc4, namtrd, namspr, namflo, namptr, namhsb) 13 !! 10 - miscellaneous (namsol, nammpp, nam mpp_dyndist, namctl)13 !! 10 - miscellaneous (namsol, nammpp, namctl) 14 14 !! 11 - Obs & Assim (namobs, nam_asminc) 15 15 !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> … … 838 838 !!====================================================================== 839 839 !! nammpp Massively Parallel Processing ("key_mpp_mpi) 840 !! nammpp_dyndist Massively Parallel domain decomposition ("key_agrif" && "key_mpp_dyndist")841 840 !! namctl Control prints & Benchmark 842 841 !! namsol elliptic solver / island / free surface … … 866 865 jpnj = 0 ! jpnj number of processors following j (set automatically if < 1) 867 866 jpnij = 0 ! jpnij number of local domains (set automatically if < 1) 868 /869 !-----------------------------------------------------------------------870 &nammpp_dyndist ! Massively Parallel Distribution for AGRIF zoom ("key_agrif" && "key_mpp_dyndist")871 !-----------------------------------------------------------------------872 jpni = 1 ! jpni number of processors following i873 jpnj = 1 ! jpnj number of processors following j874 jpnij = 1 ! jpnij number of local domains875 867 / 876 868 !----------------------------------------------------------------------- -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/SHARED/namelist_ref
r3993 r4044 11 11 !! 8 - Verical physics (namzdf, namzdf_ric, namzdf_tke, namzdf_kpp, namzdf_ddm, namzdf_tmx) 12 12 !! 9 - diagnostics (namnc4, namtrd, namspr, namflo, namptr, namhsb) 13 !! 10 - miscellaneous (namsol, nammpp, nam mpp_dyndist, namctl)13 !! 10 - miscellaneous (namsol, nammpp, namctl) 14 14 !! 11 - Obs & Assim (namobs, nam_asminc) 15 15 !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> … … 840 840 !!====================================================================== 841 841 !! nammpp Massively Parallel Processing ("key_mpp_mpi) 842 !! nammpp_dyndist Massively Parallel domain decomposition ("key_agrif" && "key_mpp_dyndist")843 842 !! namctl Control prints & Benchmark 844 843 !! namsol elliptic solver / island / free surface … … 868 867 jpnj = 0 ! jpnj number of processors following j (set automatically if < 1) 869 868 jpnij = 0 ! jpnij number of local domains (set automatically if < 1) 870 /871 !-----------------------------------------------------------------------872 &nammpp_dyndist ! Massively Parallel Distribution for AGRIF zoom ("key_agrif" && "key_mpp_dyndist")873 !-----------------------------------------------------------------------874 jpni = 1 ! jpni number of processors following i875 jpnj = 1 ! jpnj number of processors following j876 jpnij = 1 ! jpnij number of local domains877 869 / 878 870 !----------------------------------------------------------------------- -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/SHARED/namelist_top_ref
r3901 r4044 97 97 !---------------------------------------------------------------------- 98 98 ln_diatrc = .true. ! save additional diag. (T) or not (F) 99 ln_diabio = .true. ! output biological trends 99 100 nn_writedia = 5475 ! time step frequency for diagnostics 100 101 nn_writebio = 10 !: frequency of biological outputs -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/CONFIG/cfg.txt
r4025 r4044 11 11 ORCA2_LIM OPA_SRC LIM_SRC_2 NST_SRC 12 12 AGRIF OPA_SRC LIM_SRC_2 NST_SRC 13 GYRE_LONG OPA_SRC 14 GYRE_4 OPA_SRC 15 ORCA2LIMPIS_LONG OPA_SRC LIM_SRC_2 NST_SRC TOP_SRC 16 ORCA2LIMPIS_16 OPA_SRC LIM_SRC_2 NST_SRC TOP_SRC 17 ORCA2OFFPIS_LONG OPA_SRC OFF_SRC TOP_SRC 18 ORCA2OFFPIS_16 OPA_SRC OFF_SRC TOP_SRC 19 AMM12_LONG OPA_SRC 20 AMM12_32 OPA_SRC 21 ORCA2AGUL_1_2 OPA_SRC LIM_SRC_2 NST_SRC 22 SAS_LONG OPA_SRC SAS_SRC LIM_SRC_2 NST_SRC 23 SAS_32 OPA_SRC SAS_SRC LIM_SRC_2 NST_SRC -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/NEMO/NST_SRC/agrif_user.F90
r4025 r4044 72 72 ENDIF 73 73 ENDIF 74 PRINT *, " cp_cfg = ",cp_cfg," jp_cfg= ", jp_cfg75 74 ! Specific fine grid Initializations 76 75 ! no tracer damping on fine grids -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/NEMO/OPA_SRC/DOM/domain.F90
r3993 r4044 152 152 WRITE(numout,*) '~~~~~~~ ' 153 153 WRITE(numout,*) ' Namelist namrun' 154 WRITE(numout,*) ' configuration name cp_cfg = ', cp_cfg155 WRITE(numout,*) ' configuration resolution jp_cfg = ', jp_cfg156 WRITE(numout,*) ' experiment name for output cn_exp = ', cn_exp157 154 WRITE(numout,*) ' job number nn_no = ', nn_no 158 155 WRITE(numout,*) ' experiment name for output cn_exp = ', cn_exp 156 WRITE(numout,*) ' file prefix restart input cn_ocerst_in= ', cn_ocerst_in 157 WRITE(numout,*) ' file prefix restart output cn_ocerst_out= ', cn_ocerst_out 159 158 WRITE(numout,*) ' restart logical ln_rstart = ', ln_rstart 160 159 WRITE(numout,*) ' control of time step nn_rstctl = ', nn_rstctl -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/SETTE/all_functions.sh
r3294 r4044 111 111 if [ ${#VAR_NAME} -eq 0 ] 112 112 then 113 echo "doing \"set_namelist $@\". " 114 echo "variable: \"$2\" is empty" 115 echo "control that variable $2 is in \"${EXE_DIR}/$1\" " 116 echo "exit" 117 echo "error in executing script : set_namelist $@" >> ${SETTE_DIR}/output.sette 118 echo "....." >> ${SETTE_DIR}/output.sette 119 exit 1 113 echo "doing \"set_namelist $@\". " >> ${SETTE_DIR}/output.sette 114 echo "variable: \"$2\" not found in \"${EXE_DIR}/$1\" " >> ${SETTE_DIR}/output.sette 115 NAMREF=$( basename $1 _cfg )_ref 116 echo "doing more : search in ${EXE_DIR}/$NAMREF " >> ${SETTE_DIR}/output.sette 117 VAR_NAME=$( supergrep $2 ${EXE_DIR}/$NAMREF ) 118 if [ ${#VAR_NAME} -eq 0 ] 119 then 120 echo " variable $VAR_NAME not found in ${EXE_DIR}/$1 nor in ${EXE_DIR}/$NAMREF " 121 echo " check your variable name " 122 echo "exit" 123 echo "error in executing script : set_namelist $@" >> ${SETTE_DIR}/output.sette 124 echo "....." >> ${SETTE_DIR}/output.sette 125 exit 1 126 fi 127 LINEVAR=$( grep -s -n "$VAR_NAME" ${EXE_DIR}/$NAMREF | awk -F: '{ { print $1} }' ) 128 echo " $VAR_NAME found in ${EXE_DIR}/$NAMREF at line $LINEVAR " >> ${SETTE_DIR}/output.sette 129 # search for namelist group name 130 NAMGRP=$( head -n$LINEVAR ${EXE_DIR}/$NAMREF | grep --line-buffered "^&nam" | tail -1 | awk -F" " '{ { print $1} }' ) 131 echo " variable $VAR_NAME will be added in $NAMGRP namelist-group of namelist file ${EXE_DIR}/$1 " >> ${SETTE_DIR}/output.sette 132 # Add $VARNAME in namelist file ${EXE_DIR}/$1 in namelist group $NAMGRP 133 134 sed "/${NAMGRP} /a\ 135 ${VAR_NAME} 136 " ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp 137 # if file not empty replace ${EXE_DIR}/$1 138 if [ -s ${EXE_DIR}/$1.tmp ] ; then 139 mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 140 else 141 echo "file ${EXE_DIR}/$1.tmp is empty. sed command went wrong "; exit 200 142 fi 120 143 fi 144 121 145 sed -e "s:${VAR_NAME}.*:${VAR_NAME}:" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp 122 146 mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1 … … 151 175 ################################################################ 152 176 # SMALL DEBUG 177 if [ ! -r ${EXE_DIR}/ocean.output ] 178 then 179 grep "E R R O R" ${EXE_DIR}/ocean.output && echo "Some ERRORS at execution time, see ${EXE_DIR}/ocean.output" 180 exit 2 181 fi 182 153 183 if [ ! -r ${EXE_DIR}/time.step ] 154 184 then … … 158 188 else 159 189 echo "file time.step exists" >> ${SETTE_DIR}/output.sette 160 echo "ok model run" >> ${SETTE_DIR}/output.sette 161 fi 190 echo "execution of model time step loop started" >> ${SETTE_DIR}/output.sette 191 fi 192 162 193 ################################################################ 163 194 … … 191 222 echo "saving ocean & ice output, solver.stat, tracer.stat files ...." >> ${SETTE_DIR}/output.sette 192 223 echo " " >> ${SETTE_DIR}/output.sette 193 [ -f ${EXE_DIR}/*ocean.output ] && cp ${EXE_DIR}/*ocean.output ${NEMO_VALID}/. 194 [ -f ${EXE_DIR}/*solver.stat ] && cp ${EXE_DIR}/*solver.stat ${NEMO_VALID}/. 195 [ -f ${EXE_DIR}/*tracer.stat ] && cp ${EXE_DIR}/*tracer.stat ${NEMO_VALID}/. 224 [ -f ${EXE_DIR}/ocean.output ] && cp ${EXE_DIR}/*ocean.output ${NEMO_VALID}/. 225 [ -f ${EXE_DIR}/solver.stat ] && cp ${EXE_DIR}/*solver.stat ${NEMO_VALID}/. 226 [ -f ${EXE_DIR}/output.namelist.dyn ] && cp ${EXE_DIR}/*output.nam* ${NEMO_VALID}/. 227 [ -f ${EXE_DIR}/tracer.stat ] && cp ${EXE_DIR}/*tracer.stat ${NEMO_VALID}/. 228 196 229 if [ -n "$(ls ${NEMO_VALID}/*solver*)" ] ; then 197 230 echo "moved solver.stat in ${NEMO_VALID} directory" >> ${SETTE_DIR}/output.sette -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/SETTE/input_AMM12.cfg
r3680 r4044 1 amm12_inputs_v3_4_spinup.tar 1 AMM12_v3.5.tar AMM12.v3_5 -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/SETTE/input_ORCA2_LIM.cfg
r3635 r4044 1 ORCA2_LIM_nemo_v3.4.tar 1 ORCA2_LIM_nemo_v3.4.tar ORCA2_LIM_nemo_v3.4 -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/SETTE/input_ORCA2_LIM_AGRIF.cfg
r3635 r4044 1 ORCA2_LIM_nemo_v3.4.tar 1 ORCA2_LIM_nemo_v3.4.tar ORCA2_LIM_nemo_v3.4 -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/SETTE/input_ORCA2_LIM_PISCES.cfg
r3635 r4044 1 ORCA2_LIM_nemo_v3.4.tar 1 ORCA2_LIM_nemo_v3.4.tar ORCA2_LIM_PISCES_v3.5 2 INPUTS_DYNA_v3.tar ORCA2_LIM_PISCES_v3.5 3 INPUTS_INIT_v3.tar ORCA2_LIM_PISCES_v3.5 4 INPUTS_PISCES_v3.5.tar ORCA2_LIM_PISCES_v3.5 -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/SETTE/input_ORCA2_OFF_PISCES.cfg
r3635 r4044 1 INPUTS_DYNA_v3.tar 1 INPUTS_DYNA_v3.tar ORCA2_OFF_PISCES 2 INPUTS_INIT_v3.tar ORCA2_OFF_PISCES 3 INPUTS_PISCES_v3.5.tar ORCA2_OFF_PISCES -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/SETTE/iodef_sette.xml
r3764 r4044 67 67 </context> 68 68 69 <context id="1_nemo" time_origin="1950-01-01 00:00:00" > 70 71 <!-- $id$ --> 72 73 <!-- 74 ============================================================================================================ 75 = definition of all existing variables = 76 = DO NOT CHANGE = 77 ============================================================================================================ 78 --> 79 <field_definition src="./field_def.xml"/> 80 <!-- 81 ============================================================================================================ 82 = output files definition = 83 = Define your own files = 84 = put the variables you want... = 85 ============================================================================================================ 86 --> 87 88 <file_definition type="multiple_file" sync_freq="1d" min_digits="4"> 89 90 <file_group id="1h" output_freq="1h" output_level="10" enabled=".FALSE."/> <!-- 1h files --> 91 <file_group id="2h" output_freq="2h" output_level="10" enabled=".FALSE."/> <!-- 2h files --> 92 <file_group id="3h" output_freq="3h" output_level="10" enabled=".FALSE."/> <!-- 3h files --> 93 <file_group id="4h" output_freq="4h" output_level="10" enabled=".FALSE."/> <!-- 4h files --> 94 <file_group id="6h" output_freq="6h" output_level="10" enabled=".FALSE."/> <!-- 6h files --> 95 96 <file_group id="1d" output_freq="1d" output_level="10" enabled=".FALSE."> <!-- 1d files --> 97 98 <file id="1d_grid_T" name="auto" description="ocean T grid variables" > 99 <field field_ref="sst" name="tos" long_name="sea_surface_temperature" /> 100 <field field_ref="sss" name="sos" long_name="sea_surface_salinity" /> 101 <field field_ref="ssh" name="zos" long_name="sea_surface_height_above_geoid" /> 102 </file> 103 104 <file id="1d_grid_U" name="auto" description="ocean U grid variables" > 105 <field field_ref="suoce" name="uos" long_name="sea_surface_x_velocity" /> 106 </file> 107 108 <file id="1d_grid_V" name="auto" description="ocean V grid variables" > 109 <field field_ref="svoce" name="vos" long_name="sea_surface_y_velocity" /> 110 </file> 111 112 </file_group> 113 <file_group id="3d" output_freq="3d" output_level="10" enabled=".FALSE."/> <!-- 3d files --> 114 115 <file_group id="5d" output_freq="5d" output_level="10" enabled=".FALSE."> <!-- 5d files --> 116 117 <file id="5d_grid_T" name="auto" description="ocean T grid variables" > 118 <field field_ref="toce" name="thetao" long_name="sea_water_potential_temperature" /> 119 <field field_ref="soce" name="so" long_name="sea_water_salinity" /> 120 <field field_ref="sst" name="tos" long_name="sea_surface_temperature" /> 121 <field field_ref="sst2" name="tossq" long_name="square_of_sea_surface_temperature" /> 122 <field field_ref="sss" name="sos" long_name="sea_surface_salinity" /> 123 <field field_ref="ssh" name="zos" long_name="sea_surface_height_above_geoid" /> 124 <field field_ref="ssh2" name="zossq" long_name="square_of_sea_surface_height_above_geoid" /> 125 <field field_ref="empmr" name="wfo" long_name="water_flux_into_sea_water" /> 126 <field field_ref="qsr" name="rsntds" long_name="surface_net_downward_shortwave_flux" /> 127 <field field_ref="qt" name="tohfls" long_name="surface_net_downward_total_heat_flux" /> 128 <field field_ref="taum" /> 129 <field field_ref="mldkz5" /> 130 <field field_ref="mldr10_1" /> 131 </file> 132 133 <file id="5d_grid_U" name="auto" description="ocean U grid variables" > 134 <field field_ref="uoce" name="uo" long_name="sea_water_x_velocity" /> 135 <field field_ref="suoce" name="uos" long_name="sea_surface_x_velocity" /> 136 <field field_ref="utau" name="tauuo" long_name="surface_downward_x_stress" /> 137 </file> 138 139 <file id="5d_grid_V" name="auto" description="ocean V grid variables" > 140 <field field_ref="voce" name="vo" long_name="sea_water_y_velocity" /> 141 <field field_ref="svoce" name="vos" long_name="sea_surface_y_velocity" /> 142 <field field_ref="vtau" name="tauvo" long_name="surface_downward_y_stress" /> 143 </file> 144 145 <file id="5d_grid_W" name="auto" description="ocean W grid variables" > 146 <field field_ref="woce" name="wo" long_name="ocean vertical velocity" /> 147 <field field_ref="avt" name="difvho" long_name="ocean_vertical_heat_diffusivity" /> 148 </file> 149 150 <file id="5d_icemod" name="auto" description="ice variables" > 151 <field field_ref="ice_pres" /> 152 <field field_ref="snowthic_cea" name="snd" long_name="surface_snow_thickness" /> 153 <field field_ref="icethic_cea" name="sit" long_name="sea_ice_thickness" /> 154 <field field_ref="iceprod_cea" name="sip" long_name="sea_ice_thickness" /> 155 <field field_ref="ist_ipa" /> 156 <field field_ref="ioceflxb" /> 157 <field field_ref="uice_ipa" /> 158 <field field_ref="vice_ipa" /> 159 <field field_ref="utau_ice" /> 160 <field field_ref="vtau_ice" /> 161 <field field_ref="qsr_io_cea" /> 162 <field field_ref="qns_io_cea" /> 163 <field field_ref="snowpre" /> 164 </file> 165 166 </file_group> 167 168 <file_group id="1m" output_freq="1mo" output_level="10" enabled=".FALSE."/> <!-- real monthly files --> 169 <file_group id="2m" output_freq="2mo" output_level="10" enabled=".FALSE."/> <!-- real 2m files --> 170 <file_group id="3m" output_freq="3mo" output_level="10" enabled=".FALSE."/> <!-- real 3m files --> 171 <file_group id="4m" output_freq="4mo" output_level="10" enabled=".FALSE."/> <!-- real 4m files --> 172 <file_group id="6m" output_freq="6mo" output_level="10" enabled=".FALSE."/> <!-- real 6m files --> 173 174 <file_group id="1y" output_freq="1y" output_level="10" enabled=".FALSE."/> <!-- real yearly files --> 175 <file_group id="2y" output_freq="2y" output_level="10" enabled=".FALSE."/> <!-- real 2y files --> 176 <file_group id="5y" output_freq="5y" output_level="10" enabled=".FALSE."/> <!-- real 5y files --> 177 <file_group id="10y" output_freq="10y" output_level="10" enabled=".FALSE."/> <!-- real 10y files --> 178 179 </file_definition> 180 181 <!-- 182 ============================================================================================================ 183 = grid definition = = DO NOT CHANGE = 184 ============================================================================================================ 185 --> 186 187 <axis_definition> 188 <axis id="deptht" long_name="Vertical T levels" unit="m" positive="down" /> 189 <axis id="depthu" long_name="Vertical U levels" unit="m" positive="down" /> 190 <axis id="depthv" long_name="Vertical V levels" unit="m" positive="down" /> 191 <axis id="depthw" long_name="Vertical W levels" unit="m" positive="down" /> 192 <axis id="nfloat" long_name="Float number" unit="-" /> 193 </axis_definition> 194 195 <domain_definition src="./domain_def.xml"/> 196 197 <grid_definition> 198 <grid id="grid_T_2D" domain_ref="grid_T"/> 199 <grid id="grid_T_3D" domain_ref="grid_T" axis_ref="deptht"/> 200 <grid id="grid_U_2D" domain_ref="grid_U"/> 201 <grid id="grid_U_3D" domain_ref="grid_U" axis_ref="depthu"/> 202 <grid id="grid_V_2D" domain_ref="grid_V"/> 203 <grid id="grid_V_3D" domain_ref="grid_V" axis_ref="depthv"/> 204 <grid id="grid_W_2D" domain_ref="grid_W"/> 205 <grid id="grid_W_3D" domain_ref="grid_W" axis_ref="depthw"/> 206 </grid_definition> 207 </context> 208 209 69 210 <context id="xios"> 70 211 -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/SETTE/param.cfg
r3694 r4044 1 1 #- forcing files storing 2 FORCING_DIR=~/ FORCING2 FORCING_DIR=~/Documents/WORK/FORCING 3 3 #- input files storing 4 4 INPUT_DIR=${CONFIG_DIR}/${NEW_CONF}/EXP00 … … 6 6 #TMPDIR=${CONFIG_DIR}/${NEW_CONF}/EXP00 7 7 #- VALIDATION files storing 8 NEMO_VALIDATION_DIR=~/ NEMO_VALIDATION8 NEMO_VALIDATION_DIR=~/Documents/WORK/NEMO_VALIDATION -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/SETTE/prepare_job.sh
r3680 r4044 96 96 # export EXE_DIR. This directory is used to execute model 97 97 # 98 export EXE_DIR99 98 # 100 99 # … … 112 111 113 112 ################################################################ 114 # SET INPUT 113 # SET INPUT 115 114 # get the input tarfile if needed 116 tar_file=$(sed -ne "1,1p" ${SETTE_DIR}/$INPUTARFILE) 117 if [ "$(cat ${SETTE_DIR}/$INPUTARFILE | grep -c ".tar" )" -ne 0 ] ; then 118 echo "looking for tar file" >> ${SETTE_DIR}/output.sette 119 echo " " >> ${SETTE_DIR}/output.sette 120 cp ${FORCING_DIR}/${tar_file} ${INPUT_DIR}/. 121 echo "file in ${INPUT_DIR}" 122 if [ ! -f ${INPUT_DIR}/${tar_file} ] ; then 123 echo "PROBLEM during copy of tar file" >> ${SETTE_DIR}/output.sette 124 echo "tar file IS NOT present in ${INPUT_DIR} directory " >> ${SETTE_DIR}/output.sette 125 echo " " >> ${SETTE_DIR}/output.sette 126 echo "PROBLEM during copy of tar file" 127 exit 1 128 else 129 cd ${EXE_DIR} ; tar xvof ${INPUT_DIR}/*.tar ; gunzip -f *gz 130 fi 131 fi 132 133 if [ ! -f ${EXE_DIR}/namelist_ice ] ; then 134 if [ -f ${EXE_DIR}/namelist_ice_lim2 ] ; then 135 echo "choosing for namelist ice " >> ${SETTE_DIR}/output.sette 136 echo " " >> ${SETTE_DIR}/output.sette 137 cp ${EXE_DIR}/namelist_ice_lim2 ${EXE_DIR}/namelist_ice 138 elif [ -f ${EXE_DIR}/namelist_ice_lim3 ] ; then 139 cp ${EXE_DIR}/namelist_ice_lim3 ${EXE_DIR}/namelist_ice 140 fi 141 fi 142 143 144 if [ "$(cat ${CONFIG_DIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm | grep -c "agrif" )" -ne 0 ] ; then 145 #- Namelist for ocean and ice (agrif fine grid) 146 echo "choosing for namelist for AGRIF" >> ${SETTE_DIR}/output.sette 147 echo " " >> ${SETTE_DIR}/output.sette 148 cp ${EXE_DIR}/1_namelist_ice_lim2 ${EXE_DIR}/1_namelist_ice 115 if [ "$(cat ${SETTE_DIR}/$INPUTARFILE | wc -w)" -ne 0 ] ; then 116 echo "looking for input files in ${SETTE_DIR}/$INPUTARFILE " >> ${SETTE_DIR}/output.sette 117 # number of tarfiles: NBTAR 118 NBTAR=`cat ${SETTE_DIR}/$INPUTARFILE |wc -l` 119 echo "NB of tarfiles ${NBTAR} " >> ${SETTE_DIR}/output.sette 120 # loop on tarfiles 121 for nbtar_file in ${NBTAR} ; do 122 # read file name and directory in FORCING dir 123 read tar_file dir_conf_forc < ${SETTE_DIR}/$INPUTARFILE 124 echo looking for tarfile ${tar_file} and directory ${FORCING_DIR}/${dir_conf_forc} ; echo looking for tarfile ${tar_file} and directory ${FORCING_DIR}/${dir_conf_forc} >> ${SETTE_DIR}/output.sette 125 if [ -f ${FORCING_DIR}/${tar_file} ] && [ -d ${FORCING_DIR}/${dir_conf_forc} ] ; then 126 # Tarfile and input dir ar there, only check the links 127 echo "Tarfile and input dir ar there, only check the links" >> ${SETTE_DIR}/output.sette 128 # extract tarfile 129 else 130 131 if [ ! -f ${FORCING_DIR}/${tar_file} ] ; then 132 echo "tarfile ${FORCING_DIR}/${tar_file} cannot be found we stop " ; exit 2 ; fi 133 134 echo "mkdir ${FORCING_DIR}/${dir_conf_forc}" >> ${SETTE_DIR}/output.sette 135 mkdir ${FORCING_DIR}/${dir_conf_forc} 136 cd ${FORCING_DIR}/${dir_conf_forc} 137 echo " extract from tarfile ${FORCING_DIR}/${tar_file} in ${FORCING_DIR}/${dir_conf_forc}" >> ${SETTE_DIR}/output.sette 138 tar xvof ${FORCING_DIR}/${tar_file} ; gunzip -f `find . -name "*.gz"` 139 fi 140 # Tarfile and input dir ar there, only check the links 141 cd ${FORCING_DIR}/${dir_conf_forc} 142 for fida in * 143 do 144 [ -f ${EXE_DIR}/${fida} ] || ln -s ${FORCING_DIR}/${dir_conf_forc}/${fida} ${EXE_DIR}/${fida} 145 done 146 done 147 148 else 149 echo "no input file to be searched " 149 150 fi 150 151 ################################################################ -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/SETTE/sette.sh
r3708 r4044 131 131 #- 132 132 # Compiler among those in NEMOGCM/ARCH 133 COMPILER= PW6_VARGAS133 COMPILER=macport_osx 134 134 export BATCH_COMMAND_PAR="llsubmit" 135 135 export BATCH_COMMAND_SEQ=$BATCH_COMMAND_PAR 136 export INTERACT_FLAG=" no"136 export INTERACT_FLAG="yes" 137 137 export MPIRUN_FLAG="yes" 138 138 # IF YOU DON'T WANT TO USE XIOS : (this is a list of keys to be delete) 139 export KEY_XIOS="key_iomput"139 #export KEY_XIOS="key_iomput" 140 140 # IF YOU WANT TO USE XIOS : 141 #export KEY_XIOS=""141 export KEY_XIOS="" 142 142 143 143 … … 154 154 cp BATCH_TEMPLATE/batch-${COMPILER} job_batch_template || exit 155 155 156 for config in 1 2 3 4 5 6 7 8 9 156 for config in 1 2 3 4 5 6 7 8 9 10 11 157 157 158 do 158 159 … … 161 162 ## Restartability tests for GYRE 162 163 export TEST_NAME="LONG" 163 cd ${ SETTE_DIR}164 . . ./CONFIG/makenemo -m ${CMP_NAM} -n GYRE_LONG -r GYRE -j 8 add_key "key_mpp_mpi" del_key ${KEY_XIOS}164 cd ${CONFIG_DIR} 165 . ./makenemo -m ${CMP_NAM} -n GYRE_LONG -r GYRE -j 8 add_key "key_mpp_mpi" del_key ${KEY_XIOS} 165 166 cd ${SETTE_DIR} 166 167 . param.cfg … … 170 171 NPROC=4 171 172 \rm ${JOB_FILE} 172 cd ${EXE_DIR} 173 set_namelist namelist cn_exp \"GYRE_LONG\"174 set_namelist namelist nn_it000 1175 set_namelist namelist nn_itend 120176 set_namelist namelist nn_stock 60177 set_namelist namelist ln_clobber .true.178 set_namelist namelist nn_solv 2179 set_namelist namelist jpni 2180 set_namelist namelist jpnj 2181 set_namelist namelist jpnij 4182 cd ${SETTE_DIR} 173 cd ${EXE_DIR} 174 set_namelist namelist_cfg cn_exp \"GYRE_LONG\" 175 set_namelist namelist_cfg nn_it000 1 176 set_namelist namelist_cfg nn_itend 120 177 set_namelist namelist_cfg nn_stock 60 178 set_namelist namelist_cfg ln_clobber .true. 179 set_namelist namelist_cfg nn_solv 2 180 set_namelist namelist_cfg jpni 2 181 set_namelist namelist_cfg jpnj 2 182 set_namelist namelist_cfg jpnij 4 183 cd ${SETTE_DIR} 183 184 . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} 184 185 … … 187 188 . prepare_exe_dir.sh 188 189 cd ${EXE_DIR} 189 set_namelist namelist cn_exp \"GYRE_SHORT\"190 set_namelist namelist nn_it000 61191 set_namelist namelist nn_itend 120192 set_namelist namelist nn_stock 60193 set_namelist namelist ln_rstart .true.194 set_namelist namelist nn_rstctl 2195 set_namelist namelist ln_clobber .true.196 set_namelist namelist nn_solv 2197 set_namelist namelist jpni 2198 set_namelist namelist jpnj 2199 set_namelist namelist jpnij 4200 set_namelist namelist cn_ocerst_in \"GYRE_LONG_00000060_restart\"190 set_namelist namelist_cfg cn_exp \"GYRE_SHORT\" 191 set_namelist namelist_cfg nn_it000 61 192 set_namelist namelist_cfg nn_itend 120 193 set_namelist namelist_cfg nn_stock 60 194 set_namelist namelist_cfg ln_rstart .true. 195 set_namelist namelist_cfg nn_rstctl 2 196 set_namelist namelist_cfg ln_clobber .true. 197 set_namelist namelist_cfg nn_solv 2 198 set_namelist namelist_cfg jpni 2 199 set_namelist namelist_cfg jpnj 2 200 set_namelist namelist_cfg jpnij 4 201 set_namelist namelist_cfg cn_ocerst_in \"GYRE_LONG_00000060_restart\" 201 202 for (( i=1; i<=$NPROC; i++)) ; do 202 203 L_NPROC=$(( $i - 1 )) … … 213 214 ## Reproducibility tests for GYRE 214 215 export TEST_NAME="REPRO_1_4" 215 cd ${ SETTE_DIR}216 . . ./CONFIG/makenemo -m ${CMP_NAM} -n GYRE_4 -r GYRE -j 8 add_key "key_mpp_mpi key_mpp_rep" del_key ${KEY_XIOS}216 cd ${CONFIG_DIR} 217 . ./makenemo -m ${CMP_NAM} -n GYRE_4 -r GYRE -j 8 add_key "key_mpp_mpi key_mpp_rep" del_key ${KEY_XIOS} 217 218 cd ${SETTE_DIR} 218 219 . param.cfg … … 223 224 \rm ${JOB_FILE} 224 225 cd ${EXE_DIR} 225 set_namelist namelist cn_exp \"GYRE_14\"226 set_namelist namelist nn_it000 1227 set_namelist namelist nn_itend 60228 set_namelist namelist nn_fwb 0229 set_namelist namelist nn_bench 0230 set_namelist namelist ln_ctl .false.231 set_namelist namelist ln_clobber .true.232 set_namelist namelist nn_solv 2233 set_namelist namelist jpni 1234 set_namelist namelist jpnj 4235 set_namelist namelist jpnij 4226 set_namelist namelist_cfg cn_exp \"GYRE_14\" 227 set_namelist namelist_cfg nn_it000 1 228 set_namelist namelist_cfg nn_itend 60 229 set_namelist namelist_cfg nn_fwb 0 230 set_namelist namelist_cfg nn_bench 0 231 set_namelist namelist_cfg ln_ctl .false. 232 set_namelist namelist_cfg ln_clobber .true. 233 set_namelist namelist_cfg nn_solv 2 234 set_namelist namelist_cfg jpni 1 235 set_namelist namelist_cfg jpnj 4 236 set_namelist namelist_cfg jpnij 4 236 237 cd ${SETTE_DIR} 237 238 . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} … … 246 247 \rm $JOB_FILE 247 248 cd ${EXE_DIR} 248 set_namelist namelist cn_exp \"GYRE_22\"249 set_namelist namelist nn_it000 1250 set_namelist namelist nn_itend 60251 set_namelist namelist nn_fwb 0252 set_namelist namelist ln_ctl .false.253 set_namelist namelist ln_clobber .true.254 set_namelist namelist nn_solv 2255 set_namelist namelist jpni 2256 set_namelist namelist jpnj 2257 set_namelist namelist jpnij 4249 set_namelist namelist_cfg cn_exp \"GYRE_22\" 250 set_namelist namelist_cfg nn_it000 1 251 set_namelist namelist_cfg nn_itend 60 252 set_namelist namelist_cfg nn_fwb 0 253 set_namelist namelist_cfg ln_ctl .false. 254 set_namelist namelist_cfg ln_clobber .true. 255 set_namelist namelist_cfg nn_solv 2 256 set_namelist namelist_cfg jpni 2 257 set_namelist namelist_cfg jpnj 2 258 set_namelist namelist_cfg jpnij 4 258 259 cd ${SETTE_DIR} 259 260 . ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} … … 267 268 ## Restartability tests for ORCA2_LIM_PISCES 268 269 export TEST_NAME="LONG" 269 cd ${ SETTE_DIR}270 . . ./CONFIG/makenemo -m ${CMP_NAM} -n ORCA2LIMPIS_LONG -r ORCA2_LIM_PISCES -j 8 add_key "key_mpp_mpi" del_key ${KEY_XIOS}270 cd ${CONFIG_DIR} 271 . ./makenemo -m ${CMP_NAM} -n ORCA2LIMPIS_LONG -r ORCA2_LIM_PISCES -j 8 add_key "key_mpp_mpi" del_key ${KEY_XIOS} 271 272 cd ${SETTE_DIR} 272 273 . param.cfg … … 277 278 \rm ${JOB_FILE} 278 279 cd ${EXE_DIR} 279 set_namelist namelist cn_exp \"O2LP_LONG\"280 set_namelist namelist nn_it000 1281 set_namelist namelist nn_itend 150282 set_namelist namelist nn_stock 75283 set_namelist namelist ln_clobber .true.284 set_namelist namelist jpni 2285 set_namelist namelist jpnj 2286 set_namelist namelist jpnij 4287 set_namelist namelist nn_solv 2288 set_namelist namelist_top ln_trcdta .false.289 set_namelist namelist_top ln_diatrc .false.280 set_namelist namelist_cfg cn_exp \"O2LP_LONG\" 281 set_namelist namelist_cfg nn_it000 1 282 set_namelist namelist_cfg nn_itend 150 283 set_namelist namelist_cfg nn_stock 75 284 set_namelist namelist_cfg ln_clobber .true. 285 set_namelist namelist_cfg jpni 2 286 set_namelist namelist_cfg jpnj 2 287 set_namelist namelist_cfg jpnij 4 288 set_namelist namelist_cfg nn_solv 2 289 set_namelist namelist_top_cfg ln_trcdta .false. 290 set_namelist namelist_top_cfg ln_diatrc .false. 290 291 # put ln_ironsed, ln_river, ln_ndepo, ln_dust to false 291 292 # if not you need input files, and for tests is not necessary 292 set_namelist namelist_pisces ln_presatm .false.293 set_namelist namelist_pisces ln_varpar .false.294 set_namelist namelist_pisces ln_dust .false.295 set_namelist namelist_pisces ln_solub .false.296 set_namelist namelist_pisces ln_river .false.297 set_namelist namelist_pisces ln_ndepo .false.298 set_namelist namelist_pisces ln_ironsed .false.299 set_namelist namelist_pisces ln_hydrofe .false.293 set_namelist namelist_pisces_cfg ln_presatm .false. 294 set_namelist namelist_pisces_cfg ln_varpar .false. 295 set_namelist namelist_pisces_cfg ln_dust .false. 296 set_namelist namelist_pisces_cfg ln_solub .false. 297 set_namelist namelist_pisces_cfg ln_river .false. 298 set_namelist namelist_pisces_cfg ln_ndepo .false. 299 set_namelist namelist_pisces_cfg ln_ironsed .false. 300 set_namelist namelist_pisces_cfg ln_hydrofe .false. 300 301 cd ${SETTE_DIR} 301 302 . ./prepare_job.sh input_ORCA2_LIM_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} … … 305 306 . prepare_exe_dir.sh 306 307 cd ${EXE_DIR} 307 set_namelist namelist cn_exp \"O2LP_SHORT\"308 set_namelist namelist nn_it000 76309 set_namelist namelist nn_itend 150310 set_namelist namelist nn_stock 75311 set_namelist namelist ln_rstart .true.312 set_namelist namelist nn_rstctl 2313 set_namelist namelist ln_clobber .true.314 set_namelist namelist jpni 2315 set_namelist namelist jpnj 2316 set_namelist namelist jpnij 4317 set_namelist namelist nn_solv 2318 set_namelist namelist_top ln_diatrc .false.319 set_namelist namelist_top ln_rsttr .true.320 set_namelist namelist_top nn_rsttr 2321 set_namelist namelist cn_ocerst_in \"O2LP_LONG_00000075_restart\"322 set_namelist namelist_ice cn_icerst_in \"O2LP_LONG_00000075_restart_ice\"323 set_namelist namelist_top cn_trcrst_in \"O2LP_LONG_00000075_restart_trc\"308 set_namelist namelist_cfg cn_exp \"O2LP_SHORT\" 309 set_namelist namelist_cfg nn_it000 76 310 set_namelist namelist_cfg nn_itend 150 311 set_namelist namelist_cfg nn_stock 75 312 set_namelist namelist_cfg ln_rstart .true. 313 set_namelist namelist_cfg nn_rstctl 2 314 set_namelist namelist_cfg ln_clobber .true. 315 set_namelist namelist_cfg jpni 2 316 set_namelist namelist_cfg jpnj 2 317 set_namelist namelist_cfg jpnij 4 318 set_namelist namelist_cfg nn_solv 2 319 set_namelist namelist_top_cfg ln_diatrc .false. 320 set_namelist namelist_top_cfg ln_rsttr .true. 321 set_namelist namelist_top_cfg nn_rsttr 2 322 set_namelist namelist_cfg cn_ocerst_in \"O2LP_LONG_00000075_restart\" 323 set_namelist namelist_ice_cfg cn_icerst_in \"O2LP_LONG_00000075_restart_ice\" 324 set_namelist namelist_top_cfg cn_trcrst_in \"O2LP_LONG_00000075_restart_trc\" 324 325 # put ln_ironsed, ln_river, ln_ndepo, ln_dust 325 326 # if not you need input files, and for tests is not necessary 326 set_namelist namelist_pisces ln_presatm .false.327 set_namelist namelist_pisces ln_varpar .false.328 set_namelist namelist_pisces ln_dust .false.329 set_namelist namelist_pisces ln_solub .false.330 set_namelist namelist_pisces ln_river .false.331 set_namelist namelist_pisces ln_ndepo .false.332 set_namelist namelist_pisces ln_ironsed .false.333 set_namelist namelist_pisces ln_hydrofe .false.327 set_namelist namelist_pisces_cfg ln_presatm .false. 328 set_namelist namelist_pisces_cfg ln_varpar .false. 329 set_namelist namelist_pisces_cfg ln_dust .false. 330 set_namelist namelist_pisces_cfg ln_solub .false. 331 set_namelist namelist_pisces_cfg ln_river .false. 332 set_namelist namelist_pisces_cfg ln_ndepo .false. 333 set_namelist namelist_pisces_cfg ln_ironsed .false. 334 set_namelist namelist_pisces_cfg ln_hydrofe .false. 334 335 # put ln_pisdmp to false : no restoring to global mean value 335 set_namelist namelist_pisces ln_pisdmp .false.336 set_namelist namelist_pisces_cfg ln_pisdmp .false. 336 337 for (( i=1; i<=$NPROC; i++)) ; do 337 338 L_NPROC=$(( $i - 1 )) … … 350 351 ## Reproducibility tests for ORCA2_LIM_PISCES 351 352 export TEST_NAME="REPRO_4_4" 352 cd ${ SETTE_DIR}353 . . ./CONFIG/makenemo -m ${CMP_NAM} -n ORCA2LIMPIS_16 -r ORCA2_LIM_PISCES -j 8 add_key "key_mpp_mpi key_mpp_rep" del_key ${KEY_XIOS}353 cd ${CONFIG_DIR} 354 . ./makenemo -m ${CMP_NAM} -n ORCA2LIMPIS_16 -r ORCA2_LIM_PISCES -j 8 add_key "key_mpp_mpi key_mpp_rep" del_key ${KEY_XIOS} 354 355 cd ${SETTE_DIR} 355 356 . param.cfg … … 360 361 \rm $JOB_FILE 361 362 cd ${EXE_DIR} 362 set_namelist namelist nn_it000 1363 set_namelist namelist nn_itend 75364 set_namelist namelist nn_fwb 0365 set_namelist namelist ln_ctl .false.366 set_namelist namelist ln_clobber .true.367 set_namelist namelist jpni 4368 set_namelist namelist jpnj 4369 set_namelist namelist jpnij 16370 set_namelist namelist nn_solv 2371 set_namelist namelist_top ln_trcdta .false.372 set_namelist namelist_top ln_diatrc .false.363 set_namelist namelist_cfg nn_it000 1 364 set_namelist namelist_cfg nn_itend 75 365 set_namelist namelist_cfg nn_fwb 0 366 set_namelist namelist_cfg ln_ctl .false. 367 set_namelist namelist_cfg ln_clobber .true. 368 set_namelist namelist_cfg jpni 4 369 set_namelist namelist_cfg jpnj 4 370 set_namelist namelist_cfg jpnij 16 371 set_namelist namelist_cfg nn_solv 2 372 set_namelist namelist_top_cfg ln_trcdta .false. 373 set_namelist namelist_top_cfg ln_diatrc .false. 373 374 # put ln_ironsed, ln_river, ln_ndepo, ln_dust to false 374 375 # if not you need input files, and for tests is not necessary 375 set_namelist namelist_pisces ln_presatm .false.376 set_namelist namelist_pisces ln_varpar .false.377 set_namelist namelist_pisces ln_dust .false.378 set_namelist namelist_pisces ln_solub .false.379 set_namelist namelist_pisces ln_river .false.380 set_namelist namelist_pisces ln_ndepo .false.381 set_namelist namelist_pisces ln_ironsed .false.382 set_namelist namelist_pisces ln_hydrofe .false.376 set_namelist namelist_pisces_cfg ln_presatm .false. 377 set_namelist namelist_pisces_cfg ln_varpar .false. 378 set_namelist namelist_pisces_cfg ln_dust .false. 379 set_namelist namelist_pisces_cfg ln_solub .false. 380 set_namelist namelist_pisces_cfg ln_river .false. 381 set_namelist namelist_pisces_cfg ln_ndepo .false. 382 set_namelist namelist_pisces_cfg ln_ironsed .false. 383 set_namelist namelist_pisces_cfg ln_hydrofe .false. 383 384 # put ln_pisdmp to false : no restoring to global mean value 384 set_namelist namelist_pisces ln_pisdmp .false.385 set_namelist namelist_pisces_cfg ln_pisdmp .false. 385 386 cd ${SETTE_DIR} 386 387 . ./prepare_job.sh input_ORCA2_LIM_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} … … 395 396 \rm $JOB_FILE 396 397 cd ${EXE_DIR} 397 set_namelist namelist nn_it000 1398 set_namelist namelist nn_itend 75399 set_namelist namelist nn_fwb 0400 set_namelist namelist ln_clobber .true.401 set_namelist namelist jpni 2402 set_namelist namelist jpnj 8403 set_namelist namelist jpnij 16404 set_namelist namelist nn_solv 2405 set_namelist namelist_top ln_trcdta .false.406 set_namelist namelist_top ln_diatrc .false.398 set_namelist namelist_cfg nn_it000 1 399 set_namelist namelist_cfg nn_itend 75 400 set_namelist namelist_cfg nn_fwb 0 401 set_namelist namelist_cfg ln_clobber .true. 402 set_namelist namelist_cfg jpni 2 403 set_namelist namelist_cfg jpnj 8 404 set_namelist namelist_cfg jpnij 16 405 set_namelist namelist_cfg nn_solv 2 406 set_namelist namelist_top_cfg ln_trcdta .false. 407 set_namelist namelist_top_cfg ln_diatrc .false. 407 408 # put ln_ironsed, ln_river, ln_ndepo, ln_dust to false 408 409 # if not you need input files, and for tests is not necessary 409 set_namelist namelist_pisces ln_presatm .false.410 set_namelist namelist_pisces ln_varpar .false.411 set_namelist namelist_pisces ln_dust .false.412 set_namelist namelist_pisces ln_solub .false.413 set_namelist namelist_pisces ln_river .false.414 set_namelist namelist_pisces ln_ndepo .false.415 set_namelist namelist_pisces ln_ironsed .false.416 set_namelist namelist_pisces ln_hydrofe .false.410 set_namelist namelist_pisces_cfg ln_presatm .false. 411 set_namelist namelist_pisces_cfg ln_varpar .false. 412 set_namelist namelist_pisces_cfg ln_dust .false. 413 set_namelist namelist_pisces_cfg ln_solub .false. 414 set_namelist namelist_pisces_cfg ln_river .false. 415 set_namelist namelist_pisces_cfg ln_ndepo .false. 416 set_namelist namelist_pisces_cfg ln_ironsed .false. 417 set_namelist namelist_pisces_cfg ln_hydrofe .false. 417 418 # put ln_pisdmp to false : no restoring to global mean value 418 set_namelist namelist_pisces ln_pisdmp .false.419 set_namelist namelist_pisces_cfg ln_pisdmp .false. 419 420 cd ${SETTE_DIR} 420 421 . ./prepare_job.sh input_ORCA2_LIM_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} … … 427 428 ## Restartability tests for ORCA2_OFF_PISCES 428 429 export TEST_NAME="LONG" 429 cd ${ SETTE_DIR}430 . . ./CONFIG/makenemo -m ${CMP_NAM} -n ORCA2OFFPIS_LONG -r ORCA2_OFF_PISCES -j 8 add_key "key_mpp_mpi key_mpp_rep" del_key ${KEY_XIOS}430 cd ${CONFIG_DIR} 431 . ./makenemo -m ${CMP_NAM} -n ORCA2OFFPIS_LONG -r ORCA2_OFF_PISCES -j 8 add_key "key_mpp_mpi key_mpp_rep" del_key ${KEY_XIOS} 431 432 cd ${SETTE_DIR} 432 433 . param.cfg … … 437 438 \rm $JOB_FILE 438 439 cd ${EXE_DIR} 439 set_namelist namelist cn_exp \"OFFP_LONG\"440 set_namelist namelist nn_it000 1441 set_namelist namelist nn_itend 40442 set_namelist namelist nn_stock 20443 set_namelist namelist ln_clobber .true.444 set_namelist namelist jpni 2445 set_namelist namelist jpnj 2446 set_namelist namelist jpnij 4447 set_namelist namelist_top ln_trcdta .false.448 set_namelist namelist_top ln_diatrc .false.440 set_namelist namelist_cfg cn_exp \"OFFP_LONG\" 441 set_namelist namelist_cfg nn_it000 1 442 set_namelist namelist_cfg nn_itend 40 443 set_namelist namelist_cfg nn_stock 20 444 set_namelist namelist_cfg ln_clobber .true. 445 set_namelist namelist_cfg jpni 2 446 set_namelist namelist_cfg jpnj 2 447 set_namelist namelist_cfg jpnij 4 448 set_namelist namelist_top_cfg ln_trcdta .false. 449 set_namelist namelist_top_cfg ln_diatrc .false. 449 450 # put ln_ironsed, ln_river, ln_ndepo, ln_dust to false 450 451 # if not you need input files, and for tests is not necessary 451 set_namelist namelist_pisces ln_presatm .false.452 set_namelist namelist_pisces ln_varpar .false.453 set_namelist namelist_pisces ln_dust .false.454 set_namelist namelist_pisces ln_solub .false.455 set_namelist namelist_pisces ln_river .false.456 set_namelist namelist_pisces ln_ndepo .false.457 set_namelist namelist_pisces ln_ironsed .false.458 set_namelist namelist_pisces ln_hydrofe .false.452 set_namelist namelist_pisces_cfg ln_presatm .false. 453 set_namelist namelist_pisces_cfg ln_varpar .false. 454 set_namelist namelist_pisces_cfg ln_dust .false. 455 set_namelist namelist_pisces_cfg ln_solub .false. 456 set_namelist namelist_pisces_cfg ln_river .false. 457 set_namelist namelist_pisces_cfg ln_ndepo .false. 458 set_namelist namelist_pisces_cfg ln_ironsed .false. 459 set_namelist namelist_pisces_cfg ln_hydrofe .false. 459 460 # put ln_pisdmp to false : no restoring to global mean value 460 set_namelist namelist_pisces ln_pisdmp .false.461 set_namelist namelist_pisces_cfg ln_pisdmp .false. 461 462 cd ${SETTE_DIR} 462 463 . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} … … 466 467 . prepare_exe_dir.sh 467 468 cd ${EXE_DIR} 468 set_namelist namelist cn_exp \"OFFP_SHORT\"469 set_namelist namelist nn_it000 21470 set_namelist namelist nn_itend 40471 set_namelist namelist nn_stock 20472 set_namelist namelist ln_clobber .true.473 set_namelist namelist jpni 2474 set_namelist namelist jpnj 2475 set_namelist namelist jpnij 4476 set_namelist namelist_top ln_diatrc .false.477 set_namelist namelist_top ln_rsttr .true.478 set_namelist namelist_top nn_rsttr 2479 set_namelist namelist_top cn_trcrst_in \"OFFP_LONG_00000020_restart_trc\"469 set_namelist namelist_cfg cn_exp \"OFFP_SHORT\" 470 set_namelist namelist_cfg nn_it000 21 471 set_namelist namelist_cfg nn_itend 40 472 set_namelist namelist_cfg nn_stock 20 473 set_namelist namelist_cfg ln_clobber .true. 474 set_namelist namelist_cfg jpni 2 475 set_namelist namelist_cfg jpnj 2 476 set_namelist namelist_cfg jpnij 4 477 set_namelist namelist_top_cfg ln_diatrc .false. 478 set_namelist namelist_top_cfg ln_rsttr .true. 479 set_namelist namelist_top_cfg nn_rsttr 2 480 set_namelist namelist_top_cfg cn_trcrst_in \"OFFP_LONG_00000020_restart_trc\" 480 481 for (( i=1; i<=$NPROC; i++)) ; do 481 482 L_NPROC=$(( $i - 1 )) … … 485 486 # put ln_ironsed, ln_river, ln_ndepo, ln_dust 486 487 # if not you need input files, and for tests is not necessary 487 set_namelist namelist_pisces ln_presatm .false.488 set_namelist namelist_pisces ln_varpar .false.489 set_namelist namelist_pisces ln_dust .false.490 set_namelist namelist_pisces ln_solub .false.491 set_namelist namelist_pisces ln_river .false.492 set_namelist namelist_pisces ln_ndepo .false.493 set_namelist namelist_pisces ln_ironsed .false.494 set_namelist namelist_pisces ln_hydrofe .false.488 set_namelist namelist_pisces_cfg ln_presatm .false. 489 set_namelist namelist_pisces_cfg ln_varpar .false. 490 set_namelist namelist_pisces_cfg ln_dust .false. 491 set_namelist namelist_pisces_cfg ln_solub .false. 492 set_namelist namelist_pisces_cfg ln_river .false. 493 set_namelist namelist_pisces_cfg ln_ndepo .false. 494 set_namelist namelist_pisces_cfg ln_ironsed .false. 495 set_namelist namelist_pisces_cfg ln_hydrofe .false. 495 496 # put ln_pisdmp to false : no restoring to global mean value 496 set_namelist namelist_pisces ln_pisdmp .false.497 set_namelist namelist_pisces_cfg ln_pisdmp .false. 497 498 cd ${SETTE_DIR} 498 499 . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} … … 504 505 ## Reproducibility tests for ORCA2_OFF_PISCES 505 506 export TEST_NAME="REPRO_4_4" 506 cd ${ SETTE_DIR}507 . . ./CONFIG/makenemo -m ${CMP_NAM} -n ORCA2OFFPIS_16 -r ORCA2_OFF_PISCES -j 8 add_key "key_mpp_mpi key_mpp_rep" del_key ${KEY_XIOS}507 cd ${CONFIG_DIR} 508 . ./makenemo -m ${CMP_NAM} -n ORCA2OFFPIS_16 -r ORCA2_OFF_PISCES -j 8 add_key "key_mpp_mpi key_mpp_rep" del_key ${KEY_XIOS} 508 509 cd ${SETTE_DIR} 509 510 . param.cfg … … 514 515 \rm $JOB_FILE 515 516 cd ${EXE_DIR} 516 set_namelist namelist nn_it000 1517 set_namelist namelist nn_itend 40518 set_namelist namelist ln_ctl .false.519 set_namelist namelist ln_clobber .true.520 set_namelist namelist jpni 4521 set_namelist namelist jpnj 4522 set_namelist namelist jpnij 16523 set_namelist namelist_top ln_trcdta .false.524 set_namelist namelist_top ln_diatrc .false.517 set_namelist namelist_cfg nn_it000 1 518 set_namelist namelist_cfg nn_itend 40 519 set_namelist namelist_cfg ln_ctl .false. 520 set_namelist namelist_cfg ln_clobber .true. 521 set_namelist namelist_cfg jpni 4 522 set_namelist namelist_cfg jpnj 4 523 set_namelist namelist_cfg jpnij 16 524 set_namelist namelist_top_cfg ln_trcdta .false. 525 set_namelist namelist_top_cfg ln_diatrc .false. 525 526 # put ln_ironsed, ln_river, ln_ndepo, ln_dust to false 526 527 # if not you need input files, and for tests is not necessary 527 set_namelist namelist_pisces ln_presatm .false.528 set_namelist namelist_pisces ln_varpar .false.529 set_namelist namelist_pisces ln_dust .false.530 set_namelist namelist_pisces ln_solub .false.531 set_namelist namelist_pisces ln_river .false.532 set_namelist namelist_pisces ln_ndepo .false.533 set_namelist namelist_pisces ln_ironsed .false.534 set_namelist namelist_pisces ln_hydrofe .false.528 set_namelist namelist_pisces_cfg ln_presatm .false. 529 set_namelist namelist_pisces_cfg ln_varpar .false. 530 set_namelist namelist_pisces_cfg ln_dust .false. 531 set_namelist namelist_pisces_cfg ln_solub .false. 532 set_namelist namelist_pisces_cfg ln_river .false. 533 set_namelist namelist_pisces_cfg ln_ndepo .false. 534 set_namelist namelist_pisces_cfg ln_ironsed .false. 535 set_namelist namelist_pisces_cfg ln_hydrofe .false. 535 536 # put ln_pisdmp to false : no restoring to global mean value 536 set_namelist namelist_pisces ln_pisdmp .false.537 set_namelist namelist_pisces_cfg ln_pisdmp .false. 537 538 cd ${SETTE_DIR} 538 539 . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} … … 547 548 \rm $JOB_FILE 548 549 cd ${EXE_DIR} 549 set_namelist namelist nn_it000 1550 set_namelist namelist nn_itend 40551 set_namelist namelist ln_ctl .false.552 set_namelist namelist ln_clobber .true.553 set_namelist namelist jpni 2554 set_namelist namelist jpnj 8555 set_namelist namelist jpnij 16556 set_namelist namelist_top ln_trcdta .false.557 set_namelist namelist_top ln_diatrc .false.550 set_namelist namelist_cfg nn_it000 1 551 set_namelist namelist_cfg nn_itend 40 552 set_namelist namelist_cfg ln_ctl .false. 553 set_namelist namelist_cfg ln_clobber .true. 554 set_namelist namelist_cfg jpni 2 555 set_namelist namelist_cfg jpnj 8 556 set_namelist namelist_cfg jpnij 16 557 set_namelist namelist_top_cfg ln_trcdta .false. 558 set_namelist namelist_top_cfg ln_diatrc .false. 558 559 # put ln_ironsed, ln_river, ln_ndepo, ln_dust to false 559 560 # if not you need input files, and for tests is not necessary 560 set_namelist namelist_pisces ln_presatm .false.561 set_namelist namelist_pisces ln_varpar .false.562 set_namelist namelist_pisces ln_dust .false.563 set_namelist namelist_pisces ln_solub .false.564 set_namelist namelist_pisces ln_river .false.565 set_namelist namelist_pisces ln_ndepo .false.566 set_namelist namelist_pisces ln_ironsed .false.567 set_namelist namelist_pisces ln_hydrofe .false.561 set_namelist namelist_pisces_cfg ln_presatm .false. 562 set_namelist namelist_pisces_cfg ln_varpar .false. 563 set_namelist namelist_pisces_cfg ln_dust .false. 564 set_namelist namelist_pisces_cfg ln_solub .false. 565 set_namelist namelist_pisces_cfg ln_river .false. 566 set_namelist namelist_pisces_cfg ln_ndepo .false. 567 set_namelist namelist_pisces_cfg ln_ironsed .false. 568 set_namelist namelist_pisces_cfg ln_hydrofe .false. 568 569 # put ln_pisdmp to false : no restoring to global mean value 569 set_namelist namelist_pisces ln_pisdmp .false.570 set_namelist namelist_pisces_cfg ln_pisdmp .false. 570 571 cd ${SETTE_DIR} 571 572 . ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} … … 578 579 ## Restartability tests for AMM12 579 580 export TEST_NAME="LONG" 580 cd ${ SETTE_DIR}581 . . ./CONFIG/makenemo -m ${CMP_NAM} -n AMM12_LONG -r AMM12 -j 8 add_key "key_tide" del_key ${KEY_XIOS}581 cd ${CONFIG_DIR} 582 . ./makenemo -m ${CMP_NAM} -n AMM12_LONG -r AMM12 -j 8 add_key "key_tide" del_key ${KEY_XIOS} 582 583 cd ${SETTE_DIR} 583 584 . param.cfg … … 588 589 \rm $JOB_FILE 589 590 cd ${EXE_DIR} 590 set_namelist namelist nn_it000 1 591 set_namelist namelist nn_itend 12 592 set_namelist namelist nn_stock 6 593 set_namelist namelist nn_fwb 0 594 set_namelist namelist ln_ctl .false. 595 set_namelist namelist ln_clobber .true. 596 set_namelist namelist nn_dyn2d 2 597 set_namelist namelist nn_tra_dta 0 598 set_namelist namelist cn_ocerst_in \"amm12.restart_20070101\" 599 set_namelist namelist jpni 8 600 set_namelist namelist jpnj 4 601 set_namelist namelist jpnij 32 591 set_namelist namelist_cfg nn_it000 1 592 set_namelist namelist_cfg nn_itend 12 593 set_namelist namelist_cfg nn_stock 6 594 set_namelist namelist_cfg nn_fwb 0 595 set_namelist namelist_cfg ln_ctl .false. 596 set_namelist namelist_cfg ln_clobber .true. 597 set_namelist namelist_cfg nn_dyn2d 2 598 set_namelist namelist_cfg nn_tra_dta 0 599 set_namelist namelist_cfg cn_ocerst_in \"amm12_restart_oce\" 600 ln -s restarts/amm12_restart_oce.nc amm12_restart_oce.nc 601 set_namelist namelist_cfg jpni 8 602 set_namelist namelist_cfg jpnj 4 603 set_namelist namelist_cfg jpnij 32 602 604 cd ${SETTE_DIR} 603 605 . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} … … 607 609 . prepare_exe_dir.sh 608 610 cd ${EXE_DIR} 609 set_namelist namelist nn_it000 7610 set_namelist namelist nn_itend 12611 set_namelist namelist nn_fwb 0612 set_namelist namelist ln_ctl .false.613 set_namelist namelist ln_clobber .true.614 set_namelist namelist nn_dyn2d 2615 set_namelist namelist nn_tra_dta 0616 set_namelist namelist jpni 8617 set_namelist namelist jpnj 4618 set_namelist namelist jpnij 32619 set_namelist namelist ln_rstart .true.620 set_namelist namelist nn_rstctl 2621 set_namelist namelist cn_ocerst_in \"AMM12_00000006_restart\"611 set_namelist namelist_cfg nn_it000 7 612 set_namelist namelist_cfg nn_itend 12 613 set_namelist namelist_cfg nn_fwb 0 614 set_namelist namelist_cfg ln_ctl .false. 615 set_namelist namelist_cfg ln_clobber .true. 616 set_namelist namelist_cfg nn_dyn2d 2 617 set_namelist namelist_cfg nn_tra_dta 0 618 set_namelist namelist_cfg jpni 8 619 set_namelist namelist_cfg jpnj 4 620 set_namelist namelist_cfg jpnij 32 621 set_namelist namelist_cfg ln_rstart .true. 622 set_namelist namelist_cfg nn_rstctl 2 623 set_namelist namelist_cfg cn_ocerst_in \"AMM12_00000006_restart_oce_out\" 622 624 for (( i=1; i<=$NPROC; i++)) ; do 623 625 L_NPROC=$(( $i - 1 )) 624 626 L_NPROC=`printf "%04d\n" ${L_NPROC}` 625 ln -sf ../LONG/AMM12_00000006_restart_ ${L_NPROC}.nc .627 ln -sf ../LONG/AMM12_00000006_restart_oce_out_${L_NPROC}.nc . 626 628 done 627 629 cd ${SETTE_DIR} … … 634 636 ## Reproducibility tests for AMM12 635 637 export TEST_NAME="REPRO_8_4" 636 cd ${ SETTE_DIR}637 . . ./CONFIG/makenemo -m ${CMP_NAM} -n AMM12_32 -r AMM12 -j 8 add_key "key_mpp_rep key_tide" del_key ${KEY_XIOS}638 cd ${CONFIG_DIR} 639 . ./makenemo -m ${CMP_NAM} -n AMM12_32 -r AMM12 -j 8 add_key "key_mpp_rep key_tide" del_key ${KEY_XIOS} 638 640 cd ${SETTE_DIR} 639 641 . param.cfg … … 644 646 \rm ${JOB_FILE} 645 647 cd ${EXE_DIR} 646 set_namelist namelist nn_it000 1647 set_namelist namelist nn_itend 576648 set_namelist namelist nn_fwb 0649 set_namelist namelist ln_ctl .false.650 set_namelist namelist ln_clobber .true.651 set_namelist namelist nn_dyn2d 2652 set_namelist namelist nn_tra_dta 0653 set_namelist namelist cn_ocerst_in \"amm12.restart_20070101\"654 set_namelist namelist jpni 8655 set_namelist namelist jpnj 4656 set_namelist namelist jpnij 32648 set_namelist namelist_cfg nn_it000 1 649 set_namelist namelist_cfg nn_itend 576 650 set_namelist namelist_cfg nn_fwb 0 651 set_namelist namelist_cfg ln_ctl .false. 652 set_namelist namelist_cfg ln_clobber .true. 653 set_namelist namelist_cfg nn_dyn2d 2 654 set_namelist namelist_cfg nn_tra_dta 0 655 set_namelist namelist_cfg cn_ocerst_in \"amm12_restart_oce\" 656 set_namelist namelist_cfg jpni 8 657 set_namelist namelist_cfg jpnj 4 658 set_namelist namelist_cfg jpnij 32 657 659 cd ${SETTE_DIR} 658 660 . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} … … 664 666 . prepare_exe_dir.sh 665 667 cd ${EXE_DIR} 666 set_namelist namelist nn_it000 1667 set_namelist namelist nn_itend 576668 set_namelist namelist nn_fwb 0669 set_namelist namelist ln_ctl .false.670 set_namelist namelist nn_dyn2d 2671 set_namelist namelist nn_tra_dta 0672 set_namelist namelist ln_clobber .true.673 set_namelist namelist cn_ocerst_in \"amm12.restart_20070101\"674 set_namelist namelist jpni 4675 set_namelist namelist jpnj 8676 set_namelist namelist jpnij 32668 set_namelist namelist_cfg nn_it000 1 669 set_namelist namelist_cfg nn_itend 576 670 set_namelist namelist_cfg nn_fwb 0 671 set_namelist namelist_cfg ln_ctl .false. 672 set_namelist namelist_cfg nn_dyn2d 2 673 set_namelist namelist_cfg nn_tra_dta 0 674 set_namelist namelist_cfg ln_clobber .true. 675 set_namelist namelist_cfg cn_ocerst_in \"amm12_restart_oce\" 676 set_namelist namelist_cfg jpni 4 677 set_namelist namelist_cfg jpnj 8 678 set_namelist namelist_cfg jpnij 32 677 679 cd ${SETTE_DIR} 678 680 . ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} … … 685 687 ## ORCA2_LIM with Agulhas AGRIF zoom in MPI 686 688 export TEST_NAME="SHORT" 687 cd ${ SETTE_DIR}688 . . ./CONFIG/makenemo -m ${CMP_NAM} -n ORCA2AGUL_1_2 -r ORCA2_LIM -j 8 add_key "key_mpp_mpi key_mpp_rep key_agrif" del_key "key_zdftmx" del_key ${KEY_XIOS}689 cd ${CONFIG_DIR} 690 . ./makenemo -m ${CMP_NAM} -n ORCA2AGUL_1_2 -r ORCA2_LIM -j 8 add_key "key_mpp_mpi key_mpp_rep key_agrif" del_key "key_zdftmx" del_key ${KEY_XIOS} 689 691 cd ${SETTE_DIR} 690 692 . param.cfg … … 695 697 \rm ${JOB_FILE} 696 698 cd ${EXE_DIR} 697 set_namelist namelist nn_it000 1698 set_namelist namelist nn_itend 75699 set_namelist namelist ln_ctl .false.700 set_namelist namelist ln_clobber .true.701 set_namelist namelist jpni 1702 set_namelist namelist jpnj 2703 set_namelist namelist jpnij 2704 set_namelist 1_namelist nn_it000 1705 set_namelist 1_namelist nn_itend 150706 set_namelist 1_namelist ln_ctl .false.707 set_namelist 1_namelist ln_clobber .true.699 set_namelist namelist_cfg nn_it000 1 700 set_namelist namelist_cfg nn_itend 75 701 set_namelist namelist_cfg ln_ctl .false. 702 set_namelist namelist_cfg ln_clobber .true. 703 set_namelist namelist_cfg jpni 1 704 set_namelist namelist_cfg jpnj 2 705 set_namelist namelist_cfg jpnij 2 706 set_namelist 1_namelist_cfg nn_it000 1 707 set_namelist 1_namelist_cfg nn_itend 150 708 set_namelist 1_namelist_cfg ln_ctl .false. 709 set_namelist 1_namelist_cfg ln_clobber .true. 708 710 cd ${SETTE_DIR} 709 711 . ./prepare_job.sh input_ORCA2_LIM_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} … … 712 714 fi 713 715 716 # TESTS FOR ORCA2_SAS_LIM CONFIGURATION 717 if [ ${config} -eq 10 ] ; then 718 ## Restartability tests for SAS 719 export TEST_NAME="LONG" 720 cd ${CONFIG_DIR} 721 . ./makenemo -m ${CMP_NAM} -n SAS_LONG -r ORCA2_SAS_LIM -j 8 add_key " " del_key ${KEY_XIOS} 722 cd ${SETTE_DIR} 723 . param.cfg 724 . all_functions.sh 725 . prepare_exe_dir.sh 726 JOB_FILE=${EXE_DIR}/run_job.sh 727 NPROC=32 728 \rm $JOB_FILE 729 cd ${EXE_DIR} 730 set_namelist namelist_cfg cn_exp \"SAS\" 731 set_namelist namelist_cfg nn_it000 1 732 set_namelist namelist_cfg nn_itend 100 733 set_namelist namelist_cfg nn_stock 50 734 set_namelist namelist_cfg ln_ctl .false. 735 set_namelist namelist_cfg ln_clobber .true. 736 set_namelist namelist_cfg jpni 8 737 set_namelist namelist_cfg jpnj 4 738 set_namelist namelist_cfg jpnij 32 739 cd ${SETTE_DIR} 740 . ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} 741 742 cd ${SETTE_DIR} 743 export TEST_NAME="SHORT" 744 . prepare_exe_dir.sh 745 cd ${EXE_DIR} 746 set_namelist namelist_cfg cn_exp \"SAS\" 747 set_namelist namelist_cfg nn_it000 51 748 set_namelist namelist_cfg nn_itend 100 749 set_namelist namelist_cfg ln_ctl .false. 750 set_namelist namelist_cfg ln_clobber .true. 751 set_namelist namelist_cfg jpni 8 752 set_namelist namelist_cfg jpnj 4 753 set_namelist namelist_cfg jpnij 32 754 set_namelist namelist_cfg nn_rstctl 2 755 set_namelist namelist_cfg cn_ocerst_in \"SAS_00000050_restart\" 756 for (( i=1; i<=$NPROC; i++)) ; do 757 L_NPROC=$(( $i - 1 )) 758 L_NPROC=`printf "%04d\n" ${L_NPROC}` 759 ln -sf ../LONG/SAS_00000050_restart_${L_NPROC}.nc . 760 done 761 cd ${SETTE_DIR} 762 . ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} 763 cd ${SETTE_DIR} 764 . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 765 fi 766 767 if [ ${config} -eq 11 ] ; then 768 ## Reproducibility tests for ORCA2_SAS_LIM 769 export TEST_NAME="REPRO_8_4" 770 cd ${CONFIG_DIR} 771 . ./makenemo -m ${CMP_NAM} -n SAS_32 -r ORCA2_SAS_LIM -j 8 add_key " " del_key ${KEY_XIOS} 772 cd ${SETTE_DIR} 773 . param.cfg 774 . all_functions.sh 775 . prepare_exe_dir.sh 776 JOB_FILE=${EXE_DIR}/run_job.sh 777 NPROC=32 778 \rm ${JOB_FILE} 779 cd ${EXE_DIR} 780 set_namelist namelist_cfg cn_exp \"SAS\" 781 set_namelist namelist_cfg nn_it000 51 782 set_namelist namelist_cfg nn_itend 100 783 set_namelist namelist_cfg ln_ctl .false. 784 set_namelist namelist_cfg ln_clobber .true. 785 set_namelist namelist_cfg jpni 8 786 set_namelist namelist_cfg jpnj 4 787 set_namelist namelist_cfg jpnij 32 788 cd ${SETTE_DIR} 789 . ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} 790 cd ${SETTE_DIR} 791 . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 792 793 cd ${SETTE_DIR} 794 export TEST_NAME="REPRO_4_8" 795 . prepare_exe_dir.sh 796 cd ${EXE_DIR} 797 set_namelist namelist_cfg cn_exp \"SAS\" 798 set_namelist namelist_cfg nn_it000 51 799 set_namelist namelist_cfg nn_itend 100 800 set_namelist namelist_cfg ln_ctl .false. 801 set_namelist namelist_cfg ln_clobber .true. 802 set_namelist namelist_cfg jpni 4 803 set_namelist namelist_cfg jpnj 8 804 set_namelist namelist_cfg jpnij 32 805 cd ${SETTE_DIR} 806 . ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} 807 cd ${SETTE_DIR} 808 . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} 809 fi 810 714 811 done -
branches/2013/dev_r3853_CNRS9_ConfSetting/NEMOGCM/SETTE/sette_beginner.sh
r3680 r4044 38 38 # 39 39 # Compiler among those in NEMOGCM/ARCH 40 COMPILER= gfortran_osx40 COMPILER=macport_osx 41 41 export BATCH_COMMAND_PAR="llsubmit" 42 42 export BATCH_COMMAND_SEQ=$BATCH_COMMAND_PAR 43 export INTERACT_FLAG=" no"43 export INTERACT_FLAG="yes" 44 44 export MPIRUN_FLAG="yes" 45 45 … … 54 54 # Copy job_batch_COMPILER file for specific compiler into job_batch_template 55 55 cd ${SETTE_DIR} 56 cp BATCH_TEMPLATE/batch-${COMPILER} job_batch_template || exit 56 ##if [ ${INTERACT_FLAG} == no ] ; then 57 cp BATCH_TEMPLATE/batch-${COMPILER} job_batch_template || exit 58 ##fi 57 59 58 60 # Run for GYRE CONFIG … … 60 62 # compile GYRE configuration with gfortran_osx compiler run with 4 proc : 61 63 export TEST_NAME="SHORT_TEST" 62 cd ${ SETTE_DIR}63 . . ./CONFIG/makenemo -m ${CMP_NAM} -n GYRE_SHORT -r GYRE -j 10 add_key "key_mpp_mpi"64 cd ${CONFIG_DIR} 65 . ./makenemo -m ${CMP_NAM} -n GYRE_SHORT -r GYRE -j 10 add_key "key_mpp_mpi key_nosignedzero" 64 66 cd ${SETTE_DIR} 65 67 . param.cfg … … 73 75 # setting namelist parameters 74 76 # experience name 75 set_namelist namelist cn_exp \"GYRE_SHORT\"77 set_namelist namelist_cfg cn_exp \"GYRE_SHORT\" 76 78 # first time step 77 set_namelist namelist nn_it000 179 set_namelist namelist_cfg nn_it000 1 78 80 # last time step 79 set_namelist namelist nn_itend 12081 set_namelist namelist_cfg nn_itend 120 80 82 # frequency of creation of a restart file 81 set_namelist namelist nn_stock 6083 set_namelist namelist_cfg nn_stock 60 82 84 83 85 cd ${SETTE_DIR} … … 85 87 # run job, with 4 processors, test named SHORT (= 60 time steps) 86 88 cd ${SETTE_DIR} 87 . ./fcm_job.sh $N RPOC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}89 . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
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