Changeset 7178
- Timestamp:
- 2016-11-03T16:39:56+01:00 (8 years ago)
- Location:
- branches/CNRS/dev_r6270_PISCES_QUOTA/NEMOGCM/CONFIG/SHARED
- Files:
-
- 2 edited
-
field_def.xml (modified) (3 diffs)
-
namelist_pisces_ref (modified) (5 diffs)
Legend:
- Unmodified
- Added
- Removed
-
branches/CNRS/dev_r6270_PISCES_QUOTA/NEMOGCM/CONFIG/SHARED/field_def.xml
r6455 r7178 808 808 <field id="NH4_E3T" long_name="NH4 * E3T" unit="mmol/m2" > NH4 * e3t </field > 809 809 810 <!-- PISCES with Quota parama --> 811 <field id="DON" long_name="Dissolved organic N Concentration" unit="mmol/m3" /> 812 <field id="DON_E3T" long_name="DON * E3T" unit="mmol/m2" > DON * e3t </field > 813 <field id="DOP" long_name="Dissolved organic P Concentration" unit="mmol/m3" /> 814 <field id="DOP_E3T" long_name="DOP * E3T" unit="mmol/m2" > DOP * e3t </field > 815 <field id="PON" long_name="Small PON Concentration" unit="mmol/m3" /> 816 <field id="PON_E3T" long_name="PON * E3T" unit="mmol/m2" > PON * e3t </field > 817 <field id="POP" long_name="Small POP Concentration" unit="mmol/m3" /> 818 <field id="POP_E3T" long_name="POP * E3T" unit="mmol/m2" > POP * e3t </field > 819 <field id="GON" long_name="Big PON Concentration" unit="mmol/m3" /> 820 <field id="GON_E3T" long_name="GON * E3T" unit="mmol/m2" > GON * e3t </field > 821 <field id="GOP" long_name="Big POP Concentration" unit="mmol/m3" /> 822 <field id="GOP_E3T" long_name="GOP * E3T" unit="mmol/m2" > GOP * e3t </field > 823 <field id="PHYN" long_name="Nanophytoplankton N biomass" unit="mmol/m3" /> 824 <field id="PHYN_E3T" long_name="PHYN * E3T" unit="mmol/m2" > PHYN * e3t </field > 825 <field id="PHYP" long_name="Nanophytoplankton P biomass" unit="mmol/m3" /> 826 <field id="PHYP_E3T" long_name="PHYP * E3T" unit="mmol/m2" > PHYP * e3t </field > 827 <field id="DIAN" long_name="Diatoms N biomass" unit="mmol/m3" /> 828 <field id="DIAN_E3T" long_name="DIAN * E3T" unit="mmol/m2" > DIAN * e3t </field > 829 <field id="DIAP" long_name="Diatoms P biomass" unit="mmol/m3" /> 830 <field id="DIAP_E3T" long_name="DIAP * E3T" unit="mmol/m2" > DIAP * e3t </field > 831 <field id="PIC" long_name="Picophytoplankton C biomass" unit="mmol/m3" /> 832 <field id="PIC_E3T" long_name="PIC * E3T" unit="mmol/m2" > PIC * e3t </field > 833 <field id="PICN" long_name="Picophytoplankton N biomass" unit="mmol/m3" /> 834 <field id="PICN_E3T" long_name="PICN * E3T" unit="mmol/m2" > PICN * e3t </field > 835 <field id="PICP" long_name="Picophytoplankton P biomass" unit="mmol/m3" /> 836 <field id="PICP_E3T" long_name="PICP * E3T" unit="mmol/m2" > PICP * e3t </field > 837 <field id="PFe" long_name="Picophytoplankton Fe biomass" unit="mmol/m3" /> 838 <field id="PFe_E3T" long_name="PFe * E3T" unit="mmol/m2" > PFe * e3t </field > 839 <field id="PCHL" long_name="Picophytoplankton Chl biomass" unit="mg/m3" /> 840 <field id="PCHL_E3T" long_name="PCHL * E3T" unit="mmol/m2" > PCHL * e3t </field > 841 842 <!-- PISCES with ligand parametisation : variables available with key_ligand --> 843 <field id="LGW" long_name="Weak ligands concentration" unit="mmol/m3" /> 844 <field id="LFe" long_name="Lithogenic iron concentration" unit="mmol/m3" /> 845 846 810 847 <!-- PISCES with Kriest parametisation : variables available with key_kriest --> 811 848 <field id="Num" long_name="Number of organic particles" unit="1" /> … … 835 872 <field id="PARDM" long_name="Daily mean PAR" unit="W/m2" grid_ref="grid_T_3D" /> 836 873 <field id="PPPHY" long_name="Primary production of nanophyto" unit="mol/m3/s" grid_ref="grid_T_3D" /> 874 <field id="PPPHYP" long_name="Primary production of picophyto" unit="molC/m3/s" grid_ref="grid_T_3D" /> 837 875 <field id="PPPHY2" long_name="Primary production of diatoms" unit="mol/m3/s" grid_ref="grid_T_3D" /> 838 876 <field id="PPNEWN" long_name="New Primary production of nanophyto" unit="mol/m3/s" grid_ref="grid_T_3D" /> 877 <field id="PPNEWP" long_name="New Primary production of picophyto" unit="molC/m3/s" grid_ref="grid_T_3D" /> 839 878 <field id="PPNEWD" long_name="New Primary production of diatoms" unit="mol/m3/s" grid_ref="grid_T_3D" /> 840 879 <field id="PBSi" long_name="Primary production of Si diatoms" unit="mol/m3/s" grid_ref="grid_T_3D" /> 841 880 <field id="PFeN" long_name="Primary production of nano iron" unit="mol/m3/s" grid_ref="grid_T_3D" /> 881 <field id="PFeP" long_name="Primary production of pico iron" unit="molFe/m3/s" grid_ref="grid_T_3D" /> 842 882 <field id="PFeD" long_name="Primary production of diatoms iron" unit="mol/m3/s" grid_ref="grid_T_3D" /> 843 883 <field id="xfracal" long_name="Calcifying fraction" unit="1" grid_ref="grid_T_3D" /> … … 848 888 <field id="REMIN" long_name="Oxic remineralization of OM" unit="mol/m3/s" grid_ref="grid_T_3D" /> 849 889 <field id="DENIT" long_name="Anoxic remineralization of OM" unit="mol/m3/s" grid_ref="grid_T_3D" /> 890 <field id="REMINP" long_name="Oxic remineralization rate of POC" unit="-/d" grid_ref="grid_T_3D" /> 891 <field id="REMING" long_name="Oxic remineralization rate of GOC" unit="-/d" grid_ref="grid_T_3D" /> 850 892 <field id="Nfix" long_name="Nitrogen fixation" unit="mol/m3/s" grid_ref="grid_T_3D" /> 851 893 <field id="Mumax" long_name="Maximum growth rate" unit="s-1" grid_ref="grid_T_3D" /> 852 894 <field id="MuN" long_name="Realized growth rate for nanophyto" unit="s-1" grid_ref="grid_T_3D" /> 895 <field id="MuP" long_name="Realized growth rate for picophyto" unit="s-1" grid_ref="grid_T_3D" /> 853 896 <field id="MuD" long_name="Realized growth rate for diatomes" unit="s-1" grid_ref="grid_T_3D" /> 897 <field id="MunetN" long_name="Net growth rate for nanophyto" unit="s-1" grid_ref="grid_T_3D" /> 898 <field id="MunetP" long_name="Net growth rate for picophyto" unit="s-1" grid_ref="grid_T_3D" /> 899 <field id="MunetD" long_name="Net growth rate for diatomes" unit="s-1" grid_ref="grid_T_3D" /> 854 900 <field id="LNnut" long_name="Nutrient limitation term in Nanophyto" unit="" grid_ref="grid_T_3D" /> 901 <field id="LPnut" long_name="Nutrient limitation term in Picophyto" unit="-" grid_ref="grid_T_3D" /> 855 902 <field id="LDnut" long_name="Nutrient limitation term in Diatoms" unit="" grid_ref="grid_T_3D" /> 856 903 <field id="LNFe" long_name="Iron limitation term in Nanophyto" unit="" grid_ref="grid_T_3D" /> 904 <field id="LPFe" long_name="Iron limitation term in Picophyto" unit="-" grid_ref="grid_T_3D" /> 857 905 <field id="LDFe" long_name="Iron limitation term in Diatoms" unit="" grid_ref="grid_T_3D" /> 858 906 <field id="LNlight" long_name="Light limitation term in Nanophyto" unit="" grid_ref="grid_T_3D" /> 907 <field id="LPlight" long_name="Light limitation term in Picophyto" unit="-" grid_ref="grid_T_3D" /> 859 908 <field id="LDlight" long_name="Light limitation term in Diatoms" unit="" grid_ref="grid_T_3D" /> 909 <field id="SIZEN" long_name="Mean relative size of nanophyto." unit="-" grid_ref="grid_T_3D" /> 910 <field id="SIZEP" long_name="Mean relative size of picophyto." unit="-" grid_ref="grid_T_3D" /> 911 <field id="SIZED" long_name="Mean relative size of diatoms" unit="-" grid_ref="grid_T_3D" /> 860 912 <field id="Fe2" long_name="Iron II concentration" unit="nmol/m3" grid_ref="grid_T_3D" /> 861 913 <field id="Fe3" long_name="Iron III concentration" unit="nmol/m3" grid_ref="grid_T_3D" /> -
branches/CNRS/dev_r6270_PISCES_QUOTA/NEMOGCM/CONFIG/SHARED/namelist_pisces_ref
r5385 r7178 29 29 ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename ! 30 30 sn_patm = 'presatm' , -1 , 'patm' , .true. , .true. , 'yearly' , '' , '' , '' 31 sn_atmco2 = 'presatmco2_reg' , -1 , 'xco2' , .true. , .true. , 'yearly' , 'weights_AIRS_bilinear.nc' , '' , '' 31 32 cn_dir = './' ! root directory for the location of the dynamical files 32 33 ! 33 34 ln_presatm = .false. ! constant atmopsheric pressure (F) or from a file (T) 35 ln_presatmco2= .false. ! Read spatialized atm co2 files [ppm] if TRUE 34 36 / 35 37 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 36 38 &nampisbio ! biological parameters 37 39 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 38 nrdttrc = 1! time step frequency for biology40 nrdttrc = 3 ! time step frequency for biology 39 41 wsbio = 2. ! POC sinking speed 40 xkmort = 2.E-7 ! half saturation constant for mortality42 xkmort = 1.E-7 ! half saturation constant for mortality 41 43 ferat3 = 10.E-6 ! Fe/C in zooplankton 42 wsbio2 = 30. ! Big particles sinking speed 44 wsbio2 = 50. ! Big particles sinking speed 45 wsbio2max = 50. ! Big particles maximum sinking speed 46 wsbio2scale= 5000. ! Big particles length scale of sinking 43 47 niter1max = 1 ! Maximum number of iterations for POC 44 niter2max = 1 ! Maximum number of iterations for GOC 48 niter2max = 2 ! Maximum number of iterations for GOC 49 wfep = 0.2 ! FeP sinking speed 50 ldocp = 1.E-5 ! Phyto ligand production per unit doc 51 ldocz = 1.E-5 ! Zoo ligand production per unit doc 52 lthet = 0.5 ! Proportional loss of ligands due to Fe uptake 45 53 / 46 54 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' … … 149 157 ln_fechem = .false. ! complex iron chemistry ( T/F ) 150 158 ln_ligvar = .false. ! variable ligand concentration 159 ln_fecolloid = .false. ! variable colloidal fraction 151 160 xlam1 = 0.005 ! scavenging rate of Iron 152 161 xlamdust = 150.0 ! Scavenging rate of dust 153 162 ligand = 0.6E-9 ! Ligands concentration 163 kfep = 0. ! Nanoparticle formation rate constant 154 164 / 155 165 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' … … 157 167 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 158 168 xremik = 0.3 ! remineralization rate of DOC 159 xremip = 0.025 ! remineralisation rate of POC160 169 nitrif = 0.05 ! NH4 nitrification rate 161 170 xsirem = 0.003 ! remineralization rate of Si … … 163 172 xsilab = 0.5 ! Fraction of labile biogenic silica 164 173 oxymin = 1.E-6 ! Half-saturation constant for anoxia 174 oxymin2 = 6.E-6 ! Minimum O2 concentration for oxic remin. 175 feratb = 10.E-6 ! Fe/C quota in bacteria 176 xkferb = 2.5E-10 ! Half-saturation constant for bacteria Fe/C 177 / 178 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 179 &nampispoc ! parameters for organic particles 180 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 181 xremip = 0.035 ! remineralisation rate of PON 182 jcpoc = 15 ! Number of lability classes 183 rshape = 1.0 ! Shape of the gamma function 165 184 / 166 185 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' … … 205 224 concfediaz = 1.e-10 ! Diazotrophs half-saturation Cste for Iron 206 225 hratio = 1.e+7 ! Fe to 3He ratio assumed for vent iron supply 226 fep_rats = 1. ! Fep/Fer ratio from sed sources 227 fep_rath = 1. ! Fep/Fer ratio from sed hydro sources 228 / 229 !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' 230 &nampislig ! Namelist parameters for ligands, nampislig 231 !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 232 rfep = 0.001 ! Dissolution rate of FeP 233 rlgw = 1. ! Lifetime (years) of weak ligands 234 rlig = 1.E-4 ! Remin ligand production per unit C 235 prlgw = 1.E-4 ! Photolysis of weak ligand 236 rlgs = 1000. ! Lifetime (years) of strong ligands 207 237 / 208 238 !'''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''
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