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Changeset 9373 – NEMO

Changeset 9373


Ignore:
Timestamp:
2018-03-05T20:45:22+01:00 (7 years ago)
Author:
nicolasmartin
Message:

Global reorganisation of DOC directory: files/folders renaming

Location:
branches/2017/dev_merge_2017/DOC
Files:
35 deleted
1 edited
33 copied
5 moved

Legend:

Unmodified
Added
Removed

  • branches/2017/dev_merge_2017/DOC/NEMO_coding_conv.tex

    r9372 r9373  
    77\usepackage{framed}  
    88\usepackage{makeidx}  
    9 \graphicspath{{Figures/}} 
     9\graphicspath{{figures/}} 
    1010 
    1111%%%%%%% 

  • branches/2017/dev_merge_2017/DOC/NEMO_manual.tex

    r9372 r9373  
    88% ================================================================ 
    99 
    10 \include{TexFiles/Preamble} 
     10\include{texfiles/preamble} 
    1111 
    1212% ================================================================ 
    … …  
    1414% ================================================================ 
    1515 
    16 \include{TexFiles/Top_Matter} 
     16\include{texfiles/top_matter} 
    1717 
    1818% ================================================================ 
    … …  
    3636% ================================================================ 
    3737 
    38 \subfile{TexFiles/Chapters/Abstracts_Foreword} 
     38\subfile{texfiles/chapters/abstract_foreword} 
    3939 
    4040% ================================================================ 
    … …  
    4242% ================================================================ 
    4343 
    44 \subfile{TexFiles/Chapters/Introduction} 
     44\subfile{texfiles/chapters/introduction} 
    4545 
    4646% ================================================================ 
    … …  
    4848% ================================================================ 
    4949 
    50 \subfile{TexFiles/Chapters/Chap_Model_Basics} 
     50\subfile{texfiles/chapters/chap_model_basics} 
    5151 
    52 \subfile{TexFiles/Chapters/Chap_STP}         % Time discretisation (time stepping strategy) 
     52\subfile{texfiles/chapters/chap_step}           % Time discretisation (time stepping strategy) 
    5353 
    54 \subfile{TexFiles/Chapters/Chap_DOM}         % Space discretisation 
     54\subfile{texfiles/chapters/chap_DOM}            % Space discretisation 
    5555 
    56 \subfile{TexFiles/Chapters/Chap_TRA}         % Tracer advection/diffusion equation 
     56\subfile{texfiles/chapters/chap_TRA}            % Tracer advection/diffusion equation 
    5757 
    58 \subfile{TexFiles/Chapters/Chap_DYN}         % Dynamics : momentum equation 
     58\subfile{texfiles/chapters/chap_DYN}            % Dynamics : momentum equation 
    5959 
    60 \subfile{TexFiles/Chapters/Chap_SBC}         % Surface Boundary Conditions 
     60\subfile{texfiles/chapters/chap_SBC}            % Surface Boundary Conditions 
    6161 
    62 \subfile{TexFiles/Chapters/Chap_LBC}         % Lateral Boundary Conditions 
     62\subfile{texfiles/chapters/chap_LBC}            % Lateral Boundary Conditions 
    6363 
    64 \subfile{TexFiles/Chapters/Chap_LDF}         % Lateral diffusion 
     64\subfile{texfiles/chapters/chap_LDF}            % Lateral diffusion 
    6565 
    66 \subfile{TexFiles/Chapters/Chap_ZDF}         % Vertical diffusion 
     66\subfile{texfiles/chapters/chap_ZDF}            % Vertical diffusion 
    6767 
    68 \subfile{TexFiles/Chapters/Chap_DIA}         % Outputs and Diagnostics 
     68\subfile{texfiles/chapters/chap_DIA}            % Outputs and Diagnostics 
    6969 
    70 \subfile{TexFiles/Chapters/Chap_OBS}                    % Observation operator 
     70\subfile{texfiles/chapters/chap_OBS}            % Observation operator 
    7171 
    72 \subfile{TexFiles/Chapters/Chap_ASM}                    % Assimilation increments 
     72\subfile{texfiles/chapters/chap_ASM}            % Assimilation increments 
    7373 
    74 \subfile{TexFiles/Chapters/Chap_STO}                    % Stochastic param. 
     74\subfile{texfiles/chapters/chap_STO}            % Stochastic param. 
    7575 
    76 \subfile{TexFiles/Chapters/Chap_MISC}        % Miscellaneous topics 
     76\subfile{texfiles/chapters/chap_misc}           % Miscellaneous topics 
    7777 
    78 \subfile{TexFiles/Chapters/Chap_CFG}         % Predefined configurations 
     78\subfile{texfiles/chapters/chap_CONFIG}         % Predefined configurations 
    7979 
    8080% ================================================================ 
    … …  
    8484\appendix 
    8585 
    86 %\subfile{TexFiles/Chapters/Chap_Conservation} 
    87 \subfile{TexFiles/Chapters/Annex_A}       % generalised vertical coordinate 
    88 \subfile{TexFiles/Chapters/Annex_B}       % diffusive operator 
    89 \subfile{TexFiles/Chapters/Annex_C}       % Discrete invariants of the eqs. 
    90 \subfile{TexFiles/Chapters/Annex_ISO}                    % Isoneutral diffusion using triads 
    91 \subfile{TexFiles/Chapters/Annex_D}       % Coding rules 
    92 %\subfile{TexFiles/Chapters/Annex_E}                     % Notes on some on going staff (no included in the DOC) 
    93 %\subfile{TexFiles/Chapters/Annex_Fox-Kemper}   % Notes on Fox-Kemper (no included in the DOC) 
    94 %\subfile{TexFiles/Chapters/Annex_EVP}          % Notes on EVP (no included in the DOC) 
     86%\subfile{texfiles/chapters/chap_conservation} 
     87\subfile{texfiles/chapters/annex_A}       % generalised vertical coordinate 
     88\subfile{texfiles/chapters/annex_B}       % diffusive operator 
     89\subfile{texfiles/chapters/annex_C}       % Discrete invariants of the eqs. 
     90\subfile{texfiles/chapters/annex_iso}                    % Isoneutral diffusion using triads 
     91\subfile{texfiles/chapters/annex_D}       % Coding rules 
     92%\subfile{texfiles/chapters/annex_E}                     % Notes on some on going staff (no included in the DOC) 
     93%\subfile{texfiles/chapters/annex_Fox-Kemper}   % Notes on Fox-Kemper (no included in the DOC) 
     94%\subfile{texfiles/chapters/annex_EVP}          % Notes on EVP (no included in the DOC) 
    9595 
    9696% ================================================================ 
    … …  
    106106 
    107107%%\bibliographystyle{plainat} 
    108 \bibliographystyle{TexFiles/Styles/ametsoc}     % AMS biblio style (JPO) 
    109 \bibliography{TexFiles/Bibliography/Biblio} 
     108\bibliographystyle{texfiles/styles/ametsoc}     % AMS biblio style (JPO) 
     109\bibliography{texfiles/bibliography/NEMO_manual} 
    110110 
    111111% ================================================================ 

  • branches/2017/dev_merge_2017/DOC/clean.sh

    r9347 r9373  
    11#!/bin/bash 
    22 
    3 rm -f $( ls -1 NEMO_book.* | egrep -v "(tex|pdf)" ) *mpgraph* 
     3rm -f $( ls -1 NEMO_manual.* | egrep -v "(tex)" ) *mpgraph* 
    44find TexFiles -regextype posix-extended -regex ".*\.(aux|log)" -exec rm -f {} \; 
    55 

  • branches/2017/dev_merge_2017/DOC/texfiles/chapters/chap_step.tex

    r9372 r9373  
    286286%--------------------------------------------namrun------------------------------------------- 
    287287%\namdisplay{namrun} 
    288 \lstinputlisting{Namelists/namrun} 
    289 %\inputminted[fontsize=\tiny, breaklines=true, breakanywhere]{fortran}{Namelists/namrun} 
     288\lstinputlisting{namelists/namrun} 
     289%\inputminted[fontsize=\tiny, breaklines=true, breakanywhere]{fortran}{namelists/namrun} 
    290290%-------------------------------------------------------------------------------------------------------------- 
    291291 

  • branches/2017/dev_merge_2017/DOC/texfiles/preamble.tex

    r9372 r9373  
    2121 
    2222\usepackage{graphicx}                            % allows insertion of pictures 
    23 \graphicspath{{Figures/}}                                  % Set global directory for pictures 
     23\graphicspath{{figures/}}                                  % Set global directory for pictures 
    2424%\usepackage[capbesideposition={top,center}]{floatrow}      % allows captions 
    2525%\floatsetup[table]{style=plaintop}                         % beside pictures 
    … …  
    121121\usepackage{latexsym,amssymb,amsmath} 
    122122\allowdisplaybreaks[1]           % allow page breaks in the middle of equations 
    123 \usepackage{TexFiles/Styles/math_abbrev}    % use maths shortcuts 
     123\usepackage{texfiles/styles/NEMO_manual}    % use maths shortcuts 
    124124 
    125125\usepackage{times}             % use times font for text 
    … …  
    136136\usepackage{alltt,verbatim}   %%  alltt & verbatim for namelist 
    137137% namelists 
    138 \newcommand{\namdisplay}[1]{\begin{alltt}{\tiny\verbatiminput{Namelists/#1}}\end{alltt}\vspace{-10pt}} 
    139 \newcommand{\namtools}[1]{\begin{alltt}{\tiny\verbatiminput{Namelists/#1}}\end{alltt}\vspace{-10pt}} 
     138\newcommand{\namdisplay}[1]{\begin{alltt}{\tiny\verbatiminput{namelists/#1}}\end{alltt}\vspace{-10pt}} 
     139\newcommand{\namtools}[1]{\begin{alltt}{\tiny\verbatiminput{namelists/#1}}\end{alltt}\vspace{-10pt}} 
    140140% code display 
    141141\newcommand{\codedisplay} [1] {\begin{alltt}{\tiny {\begin{verbatim} {#1}} \end{verbatim}} \end{alltt}      } 
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