Opened 15 months ago
Last modified 4 months ago
#2638 assigned Task
AGF-01_Debreu_domcfg
| Reported by: | smasson | Owned by: | ldebreu |
|---|---|---|---|
| Priority: | low | Milestone: | Unscheduled |
| Component: | AGRIF | Version: | trunk |
| Severity: | minor | Keywords: | |
| Cc: |
Description
Workplan action
AGRIF / Configuration domain generation tool refactoring & Agrif friendly
Wikipage: wiki:2021WP/AGF-01_Debreu_domcfg
Commit History (54)
| Changeset | Author | Time | ChangeLog |
|---|---|---|---|
| 15556 | jchanut | 2021-11-29T16:23:06+01:00 | #2638: Add the possibility to read bottom levels at U/V/F points in the mesh file. Store fe3mask (i.e. fmask as it is prior updating it for lateral boundary conditions). All is this is only needed to ensure a correct update of parent grid variables with AgRIF. This also anticipates the possible use of coarsened meshes. |
| 15348 | jchanut | 2021-10-08T09:58:20+02:00 | #2638, set bathymetry minimum on child grids prior boundary update from parent. |
| 15347 | jchanut | 2021-10-07T17:47:59+02:00 | #2638, set parent e3t as the maximum not the average of child grid values (without vertical remapping). Number of vertical levels was ok, though. |
| 15331 | jchanut | 2021-10-05T14:51:14+02:00 | #2638, add closed seas filling algorithm (inside AGRIF zooms only) |
| 15279 | jchanut | 2021-09-23T12:00:23+02:00 | #2222 and #2638: Enable creating agrif meshes with different vertical grids (geopotential only as a start) |
| 15265 | jchanut | 2021-09-16T13:13:13+02:00 | Improve ghost cell initialization with AGRIF + minor changes such as missing _wp, tests namelists updates, etc... can be assigned to #2638 |
| 15162 | jchanut | 2021-07-30T17:05:27+02:00 | #2638, fixes bathymetry interpolation with even refinement factors |
| 15130 | jchanut | 2021-07-19T16:54:25+02:00 | #2638, Remove useless interpolation over land points around zoom + revert external switch in the i direction to the previous one (issue with north fold corssing with nn_hls=2) |
| 15119 | jchanut | 2021-07-13T16:43:22+02:00 | #2638, changes to accomodate nn_hls=2 and AGRIF zooms crossing cyclic boundaries. E-W case ok, update for North-Fold still needed. |
| 15113 | jchanut | 2021-07-09T10:04:38+02:00 | Correct AGRIF divergence conserving interpolation with cyclic zooms (i.e. nbghostcells_x/nbghostcells_y_s /= nbghostcells), #2638 |
| 15059 | jchanut | 2021-06-25T11:38:06+02:00 | #2638, replace flags for cyclic boundaries to run DOMAINcfg with agrif and cyclic boundaries in mpp (as is, l_Iperio is indeed false in mpp mode). |
| 15031 | jchanut | 2021-06-21T12:05:41+02:00 | #2638, add lbclnks for ice initial state if interpolated from parent |
| 14977 | jchanut | 2021-06-11T11:24:35+02:00 | #2638, set trunk AGRIF external to the updated library |
| 14976 | jchanut | 2021-06-11T11:14:27+02:00 | #2638, merge dev_14608_AGRIF_domcfg branch into trunk |
| 14975 | jchanut | 2021-06-11T11:05:32+02:00 | #2638, merge new AGRIF library into trunk |
| 14973 | jchanut | 2021-06-11T10:31:40+02:00 | #2638, changed merged revisions |
| 14971 | jchanut | 2021-06-11T10:22:51+02:00 | #2638, keep up with the trunk |
| 14962 | jchanut | 2021-06-09T16:20:13+02:00 | #2638, update python script to accomodate multiply nested zooms |
| 14958 | jchanut | 2021-06-07T16:31:38+02:00 | #2638, synchronize branch with trunk |
| 14956 | jchanut | 2021-06-04T18:19:19+02:00 | #2638, update AGRIF_DEMO definition |
| 14955 | jchanut | 2021-06-04T18:02:36+02:00 | #2638, Updated python script to be compliant with previous commit |
| 14952 | jchanut | 2021-06-04T17:42:50+02:00 | #2638, closed domains AGRIF new convention + various add ons |
| 14951 | jchanut | 2021-06-04T17:35:08+02:00 | #2638, change grid positioning convention (again) in case of closed boundaries over parent grid. Accounting for 1 extra land cell in that case, child grids have to be shifted by 1 point to the South East. |
| 14950 | jchanut | 2021-06-04T17:27:25+02:00 | #2638, shifted southern bdy sponge |
| 14931 | jchanut | 2021-05-31T16:36:45+02:00 | |
| 14721 | jchanut | 2021-04-16T16:11:55+02:00 | #2638, (partially) correct bathymetry transitioning in corners + add lk_north=.false. case |
| 14720 | jchanut | 2021-04-16T15:44:59+02:00 | #2638, use i refinement factor in place of j to define e1x over child grids |
| 14703 | jchanut | 2021-04-13T16:11:35+02:00 | #2638, push restrictions in agrif mapping in case of East-West periodic or North Fold lbcs + Disable interp if lk_north=.false. |
| 14702 | jchanut | 2021-04-13T16:08:34+02:00 | #2638, push restrictions in agrif mapping in case of East-West periodic or North Fold lbcs |
| 14698 | jchanut | 2021-04-13T14:11:15+02:00 | #2638: initialize agrif ghost cells number (to zero) on root grid (DOMAINcfg) |
| 14688 | jchanut | 2021-04-09T19:03:15+02:00 | Last round of changes following r14674, r14675 and r14687 (AGRIF new grid positionning), #2638 |
| 14687 | jchanut | 2021-04-09T17:48:50+02:00 | #Changes to accomodate AGRIF new grid positionning implemented at r14674 and r14675, #2638 |
| 14684 | jchanut | 2021-04-08T16:28:09+02:00 | Allow chosing type of input bathymetry in child grids again (wrongly introduced @14630), #2638 |
| 14673 | jchanut | 2021-04-02T15:06:01+02:00 | Update ICE_AGRIF child domain as for VORTEX (position dependent on ghost cell number), #2638 |
| 14656 | jchanut | 2021-03-30T16:44:41+02:00 | Revise VORTEX child grid position by taking into account Parent grid ghosts. No need to change AGRIF_FixedGrids.in file anymore if changing the number of ghostcells, #2638 |
| 14655 | jchanut | 2021-03-30T16:41:30+02:00 | AGRIF: Set ghost cell number to 0 over root grid to properly define analytical grids in zooms, #2638 |
| 14641 | jchanut | 2021-03-26T11:30:01+01:00 | 1) Revise boundary checking with AGRIF (unify vertical remaping case or not) 2) Disable parent volume check without vertical remaping until we sort out what to do in the damned overlapping zone. At this stage DOMAINcfg produces meshes in agreement with what NEMO expects, except for cyclic East-West child grids for which a mismatch persists at boundaries. Child grids over North Pole Fold or East-West boundaries are however correct, #2638 |
| 14640 | jchanut | 2021-03-26T11:04:11+01:00 | AGFdomcfg: slight changes in boundary matching location to comply with what is expected in NEMO, #2638 |
| 14634 | jchanut | 2021-03-24T11:06:04+01:00 | AGFdomcfg: temporary removal of lbclnk in procnames: this prevents using the tool in mpp mode, #2638 |
| 14633 | jchanut | 2021-03-24T11:01:30+01:00 | AGFdomcfg: fixes internal flags in the East-West periodic case and in cmems demo, #2638 |
| 14630 | jchanut | 2021-03-23T16:19:36+01:00 | AGFdomcfg: 1) restore use of analytical grids (i.e. case where jphgr_msh>0). That may be useful to set up test cases with AGRIF. 2) Add random topography over a flat bottom if nn_bathy = -1 (in place of a Gaussian bump). This illustrates well where the interface matching and update are done. #2638 |
| 14629 | jchanut | 2021-03-23T12:06:11+01:00 | AGFdomcfg: add missing block in reference namelists, #2638 |
| 14628 | jchanut | 2021-03-22T16:33:44+01:00 | AGFdomcfg: Fixes a couple of tiny compilation problems #2638 |
| 14626 | ldebreu | 2021-03-21T19:47:16+01:00 | AGFdomcfg: Update make_namelist.py (Use of NiGlo0, NjGlo0 instead of jpiglo, jpjglo #2638 |
| 14625 | ldebreu | 2021-03-21T19:46:12+01:00 | AGFdomcfg: Update AGRIF_FixedGrids.in, put an updated version for the AGRIF_DEMO test #2638 |
| 14624 | ldebreu | 2021-03-21T19:44:51+01:00 | AGFdomcfg: Update namelist files (jpiglo, jpjglo are replaced by NiGlo0, NjGlo0 version #2638 |
| 14623 | ldebreu | 2021-03-21T19:40:22+01:00 | AGFdomcfg: 1) Update DOMAINcfg to be compliant with the removal of halo cells 2) Update most of the LBC ... subroutines to a recent NEMO 4 version #2638 |
| 14622 | ldebreu | 2021-03-21T19:36:08+01:00 | AGFdomcfg: 1) define some AGRIF variables in real8 2) remove the wrong indices translation in modarrays #2638 |
| 14621 | ldebreu | 2021-03-21T19:30:00+01:00 | AGFdomcfg: allow the conv to understand the IOMSG keyworkd #2638 |
| 14620 | ldebreu | 2021-03-21T19:27:59+01:00 | AGFdomcfg: allow the conv to understand the IOMSG keyworkd #2638 |
| 14619 | ldebreu | 2021-03-21T19:25:43+01:00 | AGFdomcfg:uncomment the call to agrif_set_external_mapping, call agrif_nemo_init even on the root grid #2638 |
| 14613 | smasson | 2021-03-15T17:05:32+01:00 | AGFdomcfg: change svn:externals to use AGRIF/dev_r14608_AGRIF_domcfg, #2638 |
| 14612 | smasson | 2021-03-15T17:02:18+01:00 | AGFdomcfg: create AGRIF dev branch, #2638 |
| 14610 | smasson | 2021-03-15T16:55:57+01:00 | AGFdomcfg: create dev branch, #2638 |
Change History (57)
comment:1 Changed 15 months ago by smasson
comment:2 Changed 15 months ago by smasson
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comment:3 Changed 15 months ago by smasson
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comment:4 Changed 14 months ago by ldebreu
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comment:5 Changed 14 months ago by ldebreu
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comment:6 Changed 14 months ago by ldebreu
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comment:7 Changed 14 months ago by ldebreu
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comment:8 Changed 14 months ago by ldebreu
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comment:9 Changed 14 months ago by ldebreu
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comment:10 Changed 14 months ago by ldebreu
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comment:11 Changed 14 months ago by ldebreu
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comment:12 Changed 14 months ago by jchanut
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comment:13 Changed 14 months ago by jchanut
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comment:20 Changed 14 months ago by jchanut
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comment:21 Changed 14 months ago by jchanut
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comment:22 Changed 14 months ago by jchanut
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comment:23 Changed 14 months ago by jchanut
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comment:24 Changed 14 months ago by jchanut
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comment:25 Changed 14 months ago by jchanut
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comment:26 Changed 14 months ago by jchanut
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comment:27 Changed 14 months ago by jchanut
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comment:28 Changed 13 months ago by jchanut
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comment:29 Changed 13 months ago by jchanut
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comment:30 Changed 13 months ago by nemo
- Owner set to ldebreu
- Status changed from new to assigned
comment:31 Changed 12 months ago by jchanut
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comment:32 Changed 12 months ago by jchanut
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comment:33 Changed 12 months ago by jchanut
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comment:51 Changed 8 months ago by jchanut
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comment:52 Changed 8 months ago by jchanut
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comment:53 Changed 8 months ago by mathiot
I don't know if it is relevant, but there is already a flood filling algo in domutl in tools/DOMAINcfg/src/domutl.F90 to detect automatically all ocean cell connected somehow to a specific seed (i,j). For the closed sea module, a seed (lat/lon) is defined in the namelist to detect the open ocean (in case you want to mask it) or each closed sea.
comment:54 Changed 8 months ago by jchanut
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comment:55 Changed 8 months ago by jchanut
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comment:56 Changed 6 months ago by jchanut
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comment:57 Changed 4 months ago by nemo
- Milestone changed from 2021 WP to Unscheduled
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