Timeline
2018-05-24:
- 20:50 Changeset [9630] by
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Code for divergence correction
- 15:50 Ticket #2078 (cn_dir corrupts AGRIF input filenames) reopened by
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- 12:48 Working Groups/SI3 edited by
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(diff)
- 11:44 Ticket #2078 (cn_dir corrupts AGRIF input filenames) closed by
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wontfix: Yes, this is the way AGRIF works…
- 11:41 Ticket #2088 (Missing code snippet in bdy interpolation on the fly code) closed by
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fixed
- 11:39 Changeset [9629] by
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Inserted missing code for bdy interp, #2088.
- 11:20 Ticket #2086 (compilation with "key_agrif" using own files from MY_SRC) closed by
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fixed
- 11:16 Ticket #2089 (NESTING TOOLS AGRIF: bathymetry connection done even if open boundary lies ...) closed by
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fixed: In 9628:
[…] - 11:16 Changeset [9628] by
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Remove bathymetry connection if open boundary is closed, #2089
- 11:15 Ticket #2089 (NESTING TOOLS AGRIF: bathymetry connection done even if open boundary lies ...) created by
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== Context
NESTING TOOLS, agrif_create_bathy step.
== Analysis …
2018-05-23:
- 21:55 Changeset [9627] by
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Reorganisation plan for NEMO repository: remove svn:externals property set by mistake
- 21:50 Changeset [9626] by
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Reorganisation plan for NEMO repository: set svn:ignore property to the right folder
- 21:34 Changeset [9625] by
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Reorganisation plan for NEMO repository: set svn:ignore property to ./doc to skip files generated by LaTeX to build the PDF version of the documentation
- 20:10 Ticket #2088 (Missing code snippet in bdy interpolation on the fly code) created by
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== Context
Code associated with bdy interpolation on the fly missing is …
- 20:03 Working Groups/SI3 edited by
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(diff)
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Tags SI3 added
- 20:01 Working Groups/SI3 edited by
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(diff)
- 19:40 Changeset [9624] by
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Create a branch for divergence correction in the remeshing of isf cavity
- 17:42 Working Groups/SI3 edited by
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(diff)
- 17:42 Ticket #2087 (problems compiling reference config. C1D_PAPA in the trunk) created by
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== Context
Using trunk revision 9623, I try to compile reference …
- 17:38 Working Groups/SI3 edited by
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(diff)
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Minutes SIWG reading 2018
- 12:21 Working Groups/SI3 edited by
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(diff)
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Tags VC added
2018-05-22:
- 19:03 Changeset [9623] by
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Reorganisation plan for NEMO repository: adjust external definition for makenemo to the root of the source code
Add svn:ignore property on cfgs folder for all testing configurations created by sette ('*_ST')
- 16:48 Changeset [9622] by
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Reorganisation plan for NEMO repository: revert the last commit to define operative externals definitions and add AGRIF dev branch
Can't work on versioned sub-directories and can't use wildcard in SVN ext. properties so the definitions will be done on the trunk folder and the shareable directories ('arch'/'mk'/'tools') will not appear under Trac browser
- 16:13 Changeset [9621] by
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Reorganisation plan for NEMO repository: implementation of SVN externals definitions by extracting shareable directories from 'trunk' to 'utils' or 'vendors'
- Move the location of 'makenemo' to /utils/build/mk because it is united with the compilation scripts
- Move 'arch' and 'mk' to '/utils/build'
- Move 'tools' to '/utils/tools'
- Move dependencies to '/vendors' i.e. AGRIF, FCM & IOIPSL
- 15:23 Changeset [9620] by
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Reorganisation plan for NEMO repository: delection of all DOC figures for 2018 dev. branches
- 15:22 Changeset [9619] by
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Reorganisation plan for NEMO repository: delection of all DOC figures for 2017 dev. branches
- 15:18 Changeset [9618] by
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Reorganisation plan for NEMO repository: remove remaining figures in CNRS dev. branches
- 15:07 Changeset [9617] by
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Reorganisation plan for NEMO repository: delection of all DOC figures for CNRS dev. branches
- 11:09 Changeset [9616] by
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#2001 few additionale changes
- 10:41 Changeset [9615] by
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Correct U mask footprint and remove N-fold specific masking on
T points in out new 3d T mask.
- 08:43 Ticket #2086 (compilation with "key_agrif" using own files from MY_SRC) created by
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== Context
I have some problem with compilation when I use my files from …
2018-05-21:
- 11:29 Changeset [9614] by
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Create 3D U and V interior masks to mask out wrap columns
and 1st and last rows. Apply to appropriate grids
at dfinition phase.
- 11:29 Changeset [9613] by
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trunk : redo bugfix of CFC gas transfer velocity and add CDIAC forcing file (#2065)
2018-05-18:
- 17:35 New reply on Skilled created by
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[tides] Tides and more
- 17:00 Changeset [9612] by
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put mpirun by default (instead of poe) to force the use of intel2017 otherwise agrif does not work and they are issues with repro/restart
- 16:46 Changeset [9611] by
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complete(debug) the last commit
- 16:29 Changeset [9610] by
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replace names of the agrif subroutines from si3 to ice
- 12:00 Changeset [9609] by
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debug sette.sh
- 11:52 Changeset [9608] by
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Introduce and apply a 3D interior mask for T, U, V and W grid diagnostics.
- 11:47 Changeset [9607] by
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Changes to ensure diagnostics bit compare on different
PE decompositions w/o littering the code with expensive
lbc_lnk calls.
- 10:31 Changeset [9606] by
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change a directory for test cases
- 10:13 Changeset [9605] by
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change some names to comply with the new architecture
- 09:53 Changeset [9604] by
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change history of the ice routines
- 09:18 Ticket #2085 (dev_merge_2017/trunk without land-porc crashes when starting from restart) created by
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== Context
run without land-proc
start from restart produced by a previous …
2018-05-16:
- 16:35 Users/Model Install edited by
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(diff)
- 12:48 Changeset [9603] by
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Restore cfg.txt to be consistent with the reference configurations list
- 12:26 Changeset [9602] by
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Changes to comply with the new structure of the trunk
- 11:13 Changeset [9601] by
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change agulhas namelist by nordic namelists for agrif nesting
- 11:10 New topic on Jobs created by
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[post-doc] 3-Year postdoctoral position at University of Reading - Ocean heat uptake and simple climate models | Closing 23 May 2018
- 09:41 Ticket #2084 (Missing read for bdymask in dommsk.F90) closed by
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fixed
- 09:39 Changeset [9600] by
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Correction for missing code handling bdytmask (see ticket #2084)
- 09:35 Ticket #2084 (Missing read for bdymask in dommsk.F90) created by
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== Context
It appears that in the 2016 merge, the updated code relating …
- 00:52 Changeset [9599] by
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Fix last broken symlink
- 00:47 Changeset [9598] by
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Reorganisation plan for NEMO repository: changes to make compilation succeed with new structure
Juste one issue left with AGRIF_NORDIC with AGRIF preprocessing
Standardisation of routines header with version 4.0 and year 2018
Fix for some broken symlinks
2018-05-15:
- 20:07 Changeset [9597] by
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Reorganisation plan for NEMO repository: deletion of remaining items in /vendors
For unknown reason, some folders were still in the repository whereas not downloaded with svn checkout.
Use SVN delete command on the URLs, nothing can be done from a working copy
- 17:51 Changeset [9596] by
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Reorganisation plan for NEMO repository: preliminary implementation of the new trunk structure (ref #2015)
- Deletion of useless 1st level, add new explicit names for folders
- Extract dev tools (SETTE and Trusting) to /utils/CI
- Extract figures folder from documentation to /utils/figures
- Extrac TEST_CASES to /utils/test_cases
- Move ./TOOLS/COMPILE to ./mk
- Add few wiki files at the root: README, INSTALL and LICENSE with full text of CeCILL v2.0
- Style: uppercase for wiki files, lowercase for folder names
Additionally, inclusion of routines renaming in NST: agrif_si3 → agrif_ice
- 17:00 Changeset [9595] by
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Reorganisation plan for NEMO repository: move remaining dev branch to the right place
- 15:52 Changeset [9594] by
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Reorganisation plan for NEMO repository: partial implementation of the new layout
- NEMO
- branches
- releases
- trunk
- utils
- build
- CI
- figures
- test_cases
- tools
- vendors
- NEMO
- 15:00 Changeset [9593] by
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Reorganisation plan for NEMO repository:remove orphan dev branch
- 12:42 Changeset [9592] by
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Reorganisation plan for NEMO repository: deletion of 2016 developments folder
- 12:40 Changeset [9591] by
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Reorganisation plan for NEMO repository: deletion of 2015 developments folder (except v3.6 release)
- 12:36 Changeset [9590] by
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Reorganisation plan for NEMO repository: deletion of 2014 developments folder
- 12:35 Changeset [9589] by
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Reorganisation plan for NEMO repository: deletion of 2013 developments folder
- 12:33 Changeset [9588] by
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Reorganisation plan for NEMO repository: deletion of 2012 developments folder (except v3.4 release)
- 12:17 Changeset [9587] by
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Reorganisation plan for NEMO repository: deletion of 2011 developments folder
- 12:16 Changeset [9586] by
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Reorganisation plan for NEMO repository: deletion of 2010 developments folder
- 12:11 Changeset [9585] by
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Reorganisation plan for NEMO repository: deletion of /tags root directory with its content
- 12:08 Changeset [9584] by
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Reorganisation plan for NEMO reposiotry: emptying of obsolete code in /vendors (XIOS and predecessors)
- 11:50 Changeset [9583] by
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Commit Stephen Haddad's
https://forge.ipsl.jussieu.fr/nemo/browser/branches/UKMO/dev_r5518_GO6_package_rigorous_compile_fix
revisions 9549:9582
Met Office GMED ticket 390 refers.
- 10:50 Changeset [9582] by
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GMED #390: Added in implicit none missed in previous commit.
2018-05-14:
- 23:00 Changeset [9581] by
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Erase the trunk with the branch of 2017 developments
- 22:48 Changeset [9580] by
- 21:18 Changeset [9579] by
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Updating of the forcing archives names to prepare the release of v4.0
- 15:49 Changeset [9578] by
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Added implicit none statements to branch.
- 15:13 Changeset [9577] by
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Global renaming / Cleaning : fix bugged cfg.txt and restore loop in sette.sh, remove obsolete scripts
2018-05-11:
- 16:50 Changeset [9576] by
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Global renaming for SETTE + fix for key_lim3 in MY_SRC: push remaining modifications in order to start from a clean checkout
- 15:58 user/flavoni edited by
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(diff)
- 15:34 user/flavoni edited by
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(diff)
- 15:32 user/flavoni edited by
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(diff)
- 14:49 Changeset [9575] by
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Global renaming for reference configurations and test cases (./CONFIG): add new symbolic links, probably not fully operational
- 14:32 Changeset [9574] by
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Global renaming for fcm-make folder: untested and not sure if it worth the modfiications
- 14:25 Changeset [9573] by
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Global renaming for compilation scripts (./TOOLS/COMPILE): tools scripts have been modified but not been tested
- 13:16 Changeset [9572] by
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Global renaming for reference configurations and test cases (./CONFIG): 2 steps for removing symbolic links
- Folders
- ORCA2_LIM3_PISCES → ORCA2_SI3_PISCES
- ORCA2_SAS_LIM3 → ORCA2_SAS_SI3
- CPP keys: key_lim3 → key_si3
- Namelists and XML
- namelist_ice_lim3_ref → namelist_ice_si3_ref
- file_def_nemo-opa.xml → file_def_nemo-oce.xml, file_def_nemo-lim.xml → file_def_nemo-ice.xml
- field_def_nemo-opa.xml → field_def_nemo-oce.xml, field_def_nemo-lim.xml → field_def_nemo-ice.xml
- namp.zlim → namp.zice
- Cleaning of configurations list in cfg.txt
- Folders
- 13:00 Changeset [9571] by
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Global renaming for dependencies (./EXTERNAL): agrif_opa.in → agrif_oce.in in ./AGRIF
- 12:53 Changeset [9570] by
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Global renaming for core routines (./NEMO)
- Folders
- LIM_SRC_3 → ICE_SRC
- OPA_SRC → OCE_SRC
- CPP key: key_lim3 → key_si3
- Modules, (sub)routines and variables names
- MPI: mpi_comm_opa → mpi_comm_oce, MPI_COMM_OPA → MPI_COMM_OCE, mpi_init_opa → mpi_init_oce
- AGRIF: agrif_opa_* → agrif_oce_*, agrif_lim3_* → agrif_si3_* and few more
- TOP-PISCES: p.zlim → p.zice, namp.zlim → namp.zice
- Comments
- NEMO/OPA → NEMO/OCE
- ESIM|LIM3 → SI3
- Folders
- 11:49 Changeset [9569] by
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forgot to correct mask qns and emp in sbcflx (see #2083)
2018-05-10:
- 16:38 Ticket #2081 (time splitting and isf: bugs) closed by
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fixed
- 16:35 Ticket #2083 (surface flux not masked: bug if isf cavity) reopened by
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Ticket has been closed during the commit. Ticket needs to be kept open as …
- 16:27 Changeset [9568] by
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Update branch to be relative to rev 9565 of dev_merge_2017.
- 16:26 Ticket #2083 (surface flux not masked: bug if isf cavity) closed by
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fixed: In 9567:
[…]
- 16:26 Changeset [9567] by
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apply tmask(:,:,1) to erp, qrp, precip, snow, rnf, qns to fix #2083
- 16:22 Ticket #2083 (surface flux not masked: bug if isf cavity) created by
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== Context
Some surface flux variables are not masked and could affect …
- 15:50 Changeset [9566] by
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Use complex numbers in area calculations.
2018-05-09:
- 14:21 New reply on Tools created by
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[tools][NST] Nesting Tools and Grid Staggering
- 11:25 Changeset [9565] by
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dev_merge_2017: fix name of run.stat.nc with AGRIF
- 11:24 Changeset [9564] by
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dev_merge_2017: minor style modifications
2018-05-08:
- 19:42 Ticket #2082 (agrif_create_coordinates writes incorrect u,v points to child grid file) created by
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The agrif_create_coordinates program writes the wrong values for the u and …
- 15:48 Changeset [9563] by
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MOCI #310: Update GO6 package branch to build with rigorous optimisation level compiler option.
- 15:08 Changeset [9562] by
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MOCI #314: Updated config to work with MOCI build/test suite.
- 13:05 Changeset [9561] by
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Branch 2017/dev_merge_2017. Bug fix to prevent erroneous out of bounds access in mppini.F90 (land suppression case only). To be further tested to confirm fix is correct and sufficient
2018-05-07:
- 17:23 Changeset [9560] by
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Add the namelist block nammpp in all namelist_cfg
- 12:47 Changeset [9559] by
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Minor corrections to compute PISCES chemical constant at every time-step rather than every day
2018-05-05:
- 12:59 Changeset [9558] by
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Add missing namelist parameter in the source code
- 12:53 Changeset [9557] by
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Minor corrections
- 11:51 Changeset [9556] by
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Minor improvments to ensures PISCES restartability
- 10:12 Changeset [9555] by
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Remove the SPITZ12 configuration .exe file
2018-05-04:
- 20:54 Ticket #2081 (time splitting and isf: bugs) created by
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== Context
In the trunk, 3 bugs were found recently with time splitting …
- 20:22 Changeset [9554] by
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Correction bug with isf and flux form (mask issue) + change mask used for ubaro output
- 18:25 Changeset [9553] by
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add SPITZ12 into SETTE tests
- 18:02 Changeset [9552] by
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add a new configuration SPITZ12 which is a regional simulation around the Spitzbergen (Svalbard archipelago) which includes tides and sea-ice with open boundaries.
- 16:52 Changeset [9551] by
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Remove tracer horizontal diffusion in test case + correct interfaces interpolation after understanding it is related to ORCA2 edited scale factors
-
Tags logs added
- 15:59 Changeset [9550] by
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put back key_nosignedzero in cpp keys of orca2. I think it is needed but if not, please feel free of removing it again and in other configurations
- 15:09 Ticket #2079 (pb compiling iom.F90 without key_iomput) closed by
-
fixed: Compilation problem is indeed solved.
Thanks
I'm closing the ticket.
- 12:32 Changeset [9549] by
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MOCI 310 - Branch to fix compilation and running when using rigorous optimisation level compiler option.
- 12:23 Changeset [9548] by
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MOCI #3314: creating branch for test suite.
- 12:21 Changeset [9547] by
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test commit
- 07:57 Changeset [9546] by
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dev_merge_2017: add a TKE parameter to control the activation of nn_etau below sea-ice
2018-05-03:
- 18:47 Changeset [9545] by
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Add diagnostics in diawri - revert to old interface interpolation - change default regriding parameters - add linear ramp at startup
- 18:28 Changeset [9544] by
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No need to initialize solar penetration for Offline since qsr is read in file
- 17:48 Changeset [9543] by
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correct the output frequency for agrif nordic
- 17:43 Changeset [9542] by
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avoid problems with some configurations when outputing results
- 17:26 Changeset [9541] by
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move sbc_init above dom_init
- 16:11 user/gm/Namelist_framework edited by
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(diff)
- 14:38 New topic on Tools created by
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[tools][NST] Nesting Tools and Grid Staggering
- 14:28 Changeset [9540] by
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debug the dimension read for sea ice when using BDY
- 11:21 Changeset [9539] by
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dev_merge_2017 : validation of Offline configurations
- 09:02 user/gm/Namelist_framework edited by
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(diff)
2018-05-02:
- 18:41 Ticket #2076 (restart of NEMO web access and services) closed by
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worksforme: So far, all the IT systems have restarted and seem to work well.
- 18:38 Ticket #2077 (xios-1.0 rev703 error in parallel output) closed by
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invalid: Here we do not support XIOS, you must address this to the XIOS team …
- 16:45 Changeset [9538] by
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Same bug fix as in r9473 of the branch - see comment to previous revision
- 16:41 Changeset [9537] by
-
Bug fix for key_asminc
WARNING - this fix is applied to revision 9196 of the branch, so the fix at revision 9473 is not included - it will be included in the next revision: this is done so we can use the same version as the operational suite, which at the moment does not contain the fix included in r9473
-
Tags 2018 added
-
Tags 2018 added
-
Tags 2018 added
-
Tags 2018 added
-
Tags 2018 added
-
Tags 2018 added
- 09:57 New topic on Skilled created by
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[tides] Tides and more
2018-05-01:
- 21:59 New topic on Jobs created by
-
[phd][post-doc] PhD or post-doctoral position in Polar Ocean Modelling with NEMO over Arctic | Closing 31 May 2018
- 13:37 Changeset [9536] by
- 13:22 Changeset [9535] by
- 11:33 Ticket #2080 (bug in z tilde?) created by
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== Context
I think the IF test in line 327 of domvvl.F90 might be wrong. …
- 08:11 user/gm/Namelist_framework edited by
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(diff)
- 08:05 user/gm edited by
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(diff)
2018-04-30:
- 20:38 2018WP/CMCC-02_Stefania Ciliberti_BDYTool edited by
-
(diff)
- 20:36 2018WP/CMCC-02_Stefania Ciliberti_BDYTool created by
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New page from template Work Plan Action?
- 20:33 2018WP/CMCC-01_Stefania Ciliberti_BDYModel edited by
-
(diff)
- 20:28 2018WP/CMCC-01_Stefania Ciliberti_BDYModel created by
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New page from template Work Plan Action?
-
Tags VC added
- 18:46 Changeset [9534] by
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correction on the check of .svn repository as since svn v1.7, .svn repository only available in the root of the working copy. Add print of last changed revision. Check revision at the root of the working copy.
- 18:30 Ticket #2079 (pb compiling iom.F90 without key_iomput) created by
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== Context
Trying to run a configuration with 2 AGRIFS zooms, I get some …
- 17:54 Changeset [9533] by
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Branch 2017/dev_merge_2017. Cosmetic changes to ORCA2_LIM3PISCES namelist_cfg to remove empty namelist blocks and bring a few comments into line with reference namelist. This seems to be the best solution for keeping cfg namelists with minimal content whilst making a side by side comparison with the reference namelist meaningful and useful
- 17:00 Changeset [9532] by
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dev_merge_2017: end of the renaming MLE
- 16:59 Changeset [9531] by
-
dev_merge_2017: rename traadv_mle.F90 & namtra_adv_mle as tramle.F90 & namtra_mle, resp.
- 16:54 Changeset [9530] by
-
ztilde update: add COMODO Internal wave test case
- 16:38 Changeset [9529] by
-
ztilde stability update
- 16:17 user/flavoni/TD_mod-num created by
-
- 15:39 Changeset [9528] by
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dev_merge_2017: add to new vorticity scheme (EET= EEN using e3t instead of e3f, and ENT= energy conserving at T-point). NB: not used in ref config.
- 13:10 Changeset [9527] by
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dev_merge_2017: NO selection for lateral momentum boundary condition
- 12:22 Changeset [9526] by
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dev_merge_2017: rename ln_…NONE as ln_…OFF (CONFIG, OPA_SRC, TOP_SRC) ; agrif zoom now only in AGRIF_NORDIC configuration
2018-04-29:
- 23:05 Changeset [9525] by
-
change sette so that GYRE configuration runs and report is readable
2018-04-27:
- 19:41 Changeset [9524] by
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correct sas_biper namelists
- 19:39 Changeset [9523] by
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fix to OBS to deal with a change in the halo at the wrap points (Dan Lea)
- 18:52 Changeset [9522] by
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debug test cases
- 18:46 Changeset [9521] by
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correct lock_exchange namelists
- 18:43 Changeset [9520] by
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correct overflow namelists
- 18:41 Changeset [9519] by
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correct vortex namelists
- 17:59 Changeset [9518] by
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update sette tests so that all configurations are tested and the report includes the test cases if any
- 17:11 Changeset [9517] by
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small corrections to make SETTE work
- 16:46 Changeset [9516] by
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#2075 - dev_merge_2017: CONFIG:correct the namelist_top_cfg + activate ln_traldf_msc in ORCA2 and NORDIC
- 14:56 Changeset [9515] by
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Do not use halos in area calculations.
- 14:49 Changeset [9514] by
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fix namelists one more time for agrif
- 14:30 Changeset [9513] by
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Add option to detect and remove subglacial lake (do not affect closed sea option)
- 14:08 user/gm/Namelist_framework edited by
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(diff)
- 13:06 Changeset [9512] by
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Correct lbc_lnk call and fix initialisation bugs in diaptr.
- 12:04 Changeset [9511] by
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fix namelists of agrif_nordic
- 11:55 Changeset [9510] by
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fix restartability with SAS module =⇒ SAS_BIPER is now restartable
- 11:21 Changeset [9509] by
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SASBIPER test case formally introduced in sette tests (for now restartability fails with key_agrif and is ok without)
- 11:08 Changeset [9508] by
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add forgotten key_agrif
- 10:11 Changeset [9507] by
-
add comments in SETTE for running AGRIF_NORDIC
2018-04-26:
- 19:51 user/gm/Namelist_framework edited by
-
(diff)
- 16:54 Changeset [9506] by
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for some mpp decomposition (typically 8x4) agrif failed at running because some barotropic fields needed to be initialized (ub2_b etc) for the 1st interpolation and update. These fields are now set to 0 in dynspg_ts
- 12:24 Changeset [9505] by
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make sure to use the right iodef.xml and not the one defined in agrif
- 12:18 Ticket #2078 (cn_dir corrupts AGRIF input filenames) created by
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== Context
Input files (forcing etc.) cannot be found if cn_dir differs …
- 10:29 user/gm edited by
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(diff)
- 09:55 user/gm/Namelist_framework edited by
-
(diff)
- 09:36 user/gm/Namelist_framework created by
-
2018-04-25:
- 17:41 Changeset [9504] by
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Branch 2017/dev_merge_2017. Cosmetic changes to namelists to restore alignment between reference and configuration namelists. Done for ORCA2_LIM3_PISCES pending a decision on whether or not to do the rest.
- 16:29 Ticket #2077 (xios-1.0 rev703 error in parallel output) created by
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== Context
On a linux cluster, and compiling with gcc, using one_file in …
- 16:27 Changeset [9503] by
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Add in missing updates to sbc_ice.F90.
- 10:53 Ticket #2076 (restart of NEMO web access and services) created by
-
== Context
Due to electric shutdown, all NEMO web access and services …
- 10:24 Changeset [9502] by
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Ensure numerous diagnostics are bit comparable ond different PE
decompositions.
- 10:18 Changeset [9501] by
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Ensure ALL diagnostics are bit comparable on different PE configurations.
Essentially this involves ensuring that ALL wrap columns in global models
are up to date at the point of writing diagnostics. Without this,
hundreds
of diagnostics feature wrap columns which contain uninitialised
data, the contents of which may vary with PE decomposition. Those are the
detectable ones. In the cases that diagnostics are actually initialised, it's
impossible to detect duff wrap column data w/o manually examining every
diagnostic. That then leads to questions about data integrity
(e.g. if someone daoes a global max or min operation on a field w/o
properly poplulated data they will get incorrect, and not necessarily
noticeable, information!)
Also remove redundant, duplicate computation and iom_put of 3D
diagnostic weiv_masstr.
