Timeline
2019-08-27:
- 18:50 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
-
(diff) - 18:23 Changeset [11474] by
-
Ticket #2314 merge NEMO_4.0_old_tidal_mixing
- 17:15 Changeset [11473] by
-
Ticket #2314 rename MO intel architecture file
- 16:42 Changeset [11472] by
-
ticket #2314 merge NEMO_4.0_GO6_mixing
- 16:38 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
-
(diff)
- 16:31 Changeset [11471] by
-
Branch for ticket #2314
- 16:28 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
-
(diff)
- 16:26 Ticket #2314 (NEMO_SI3_decoupled) created by
-
==== Context
Reference branch for work on GO8 configuration to have …
- 15:30 Working Groups/Kernel edited by
-
(diff)
- 15:17 Working Groups/Kernel/Members Aug2019 created by
-
-
Notes on vertical coordinates: Alex Megann May 2018
-
Notes on vertical coordinates: Alex Megann May 2018
- 15:02 Working Groups/Kernel edited by
-
(diff)
-
Notes on z tilde: Jerome Chanut May 2018
- 14:58 Working Groups/Kernel edited by
-
(diff)
-
Notes tiling: Gurvan Jan 2019
-
Notes kernel WG on 30 May 2018
-
Notes kernel WG on 30 May 2018
- 14:54 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
-
(diff)
- 14:49 Working Groups/Kernel edited by
-
(diff)
-
Proposals for pressure forces in NEMO: Mike Bell June 2018
-
Notes on 2LTS: Gurvan Madec April 2018
-
Notes on 2LTS: Dave Storkey Feb 2019
- 14:40 Working Groups/Kernel edited by
-
(diff)
- 14:27 Working Groups/Kernel edited by
-
(diff)
- 14:22 Working Groups/Kernel edited by
-
(diff)
-
Notes on 2LTS: Dave Storkey Feb 2019
-
Notes tiling: Gurvan Jan 2019
-
Minutes coordination large scale changes: Mike Bell Feb 2019
-
Minutes coordination large scale changes: Mike Bell Feb 2019
-
Minutes coordination of 2LTS coding: Mike Bell July 2018
-
Notes on 2LTS: Gurvan Madec April 2018
-
Bottom friction projection onto barotropic mode: Jerome Chanut: Oct 2018
-
Terms of Reference for NEMO Kernel WG
-
Presentation on Kernel WG to NDC January 2019
- 13:54 Working Groups/Kernel edited by
-
(diff)
- 11:37 Ticket #2313 (Possible uninitialised variables in sbccpl) created by
-
==== Context
In the following lines of code the syntax in the ELSE IF …
2019-08-26:
2019-08-23:
- 19:59 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
-
(diff)
- 19:46 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
-
(diff)
- 19:12 2019WP/ENHANCE-05_SimonM-Harmonic_Analysis edited by
-
(diff)
- 14:37 Working Groups/HPC edited by
-
(diff)
- 14:37 Working Groups/HPC edited by
-
(diff)
-
NEMO HPC WG stock take (power point presented at Developers Committee)
-
NEMO HPC WG stock take (power point presented at Developers Committee)
- 14:16 Working Groups/HPC edited by
-
(diff)
-
NEMO HPC WG stock take (15 Jan 2019)
- 14:05 Working Groups/HPC/Members June2019 edited by
-
(diff)
- 12:23 Changeset [11470] by
-
Branch to test SLA assim changes in NWS
- 12:13 Working Groups/HPC/Members June2019 edited by
-
(diff)
- 11:53 Working Groups/HPC/Members June2019 created by
-
- 11:49 Working Groups/HPC edited by
-
(diff)
- 11:49 Working Groups/HPC/Members2018 created by
-
- 11:47 Working Groups/HPC edited by
-
(diff)
- 11:43 Working Groups/HPC edited by
-
(diff)
-
NEMO HPC WG objectives & activities June 2019
- 11:39 Working Groups/HPC edited by
-
(diff)
- 11:38 Working Groups/HPC/Home Page2014 created by
-
- 11:12 Working Groups/HPC edited by
-
(diff)
- 11:09 Working Groups/HPC/Main Activities2018 created by
-
- 11:05 Working Groups/HPC edited by
-
(diff)
- 11:02 Working Groups/HPC edited by
-
Regrouping the page (diff)
- 10:38 Changeset [11469] by
-
Remove branch which has been merged into the main obs oper branch.
- 10:37 Changeset [11468] by
-
Merged changes to allow writing of climatological information to feedback files.
2019-08-22:
- 11:49 Changeset [11467] by
-
Ticket #2197 allocate arrays at the beggining of the run
2019-08-21:
- 18:32 Scientific Advisory Board/Agenda/2019-01-23 edited by
-
added minutes from the meeting (diff)
- 18:31 Scientific Advisory Board/Agenda/2019-01-23 edited by
-
(diff)
-
Minutes NEMO Developers' Committee meeting Jan / Feb 2019
-
Minutes NEMO Developers' Committee meeting Jan / Feb 2019
- 09:18 Changeset [11466] by
-
dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap: Bug fixes for ssh_atf routine in sshwzv.
2019-08-20:
- 18:03 Changeset [11465] by
-
Branch dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap. Update VORTEX/MY_SRC/domvvl.F90 to be compatible with time swapping changes; now passes SETTE tests
- 15:39 Changeset [11464] by
-
Commit changes which are in one of Jennie's orca12 branches.
- 14:14 Changeset [11463] by
-
Branch: dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap. Minor bugfix in step.F90 to enable AGRIF SETTE tests to run. Also merged prettification changes to NST routines from the dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps branch. Neither AGRIF_DEMO nor VORTEX restart perfectly (drifting after 8 and 121 timesteps, respectively).
- 12:45 Changeset [11462] by
-
Changes committed back to dev_r5518_obs_oper_update
- 12:41 Changeset [11461] by
-
Updated check on min obs depth to use 3D depth array.
- 11:41 Changeset [11460] by
-
Minor changes.
- 10:59 Changeset [11459] by
-
Revision in chapter TRA : mainly removal obsolete CPP keys and update of namelist parameter
- 10:32 Changeset [11458] by
-
Read mmpmask from domain_cfg instead of bottom_level
- 10:20 Changeset [11457] by
-
Create a branch to read a mppmask instead of bottom level to remove processor
2019-08-19:
- 18:27 Changeset [11456] by
-
First wrking version which produces correct seeming results.
- 17:36 Changeset [11455] by
-
Commit version which compiles and runs. Not fully tested that it is producing the correct answer yet though.
- 17:28 Changeset [11454] by
-
Final changes to make the branch work in uncoupled mode
- 16:05 Changeset [11453] by
-
Add land mask when outputting wind field, to prevent XIOS errors when running
- 13:28 Changeset [11452] by
-
Changes as in the original branch, plus one bug fix in oce.F90, plus changes to run with the branch but in uncoupled mode - although this is not complete yet
- 12:51 Changeset [11451] by
-
Modified sheck on min obs deth to use 3D depth array.
- 12:38 Changeset [11450] by
-
Create a branch for fixing reassignment of depth of near-surface obs in obs_prep
- 10:54 Changeset [11449] by
-
Committed first version of changes to output climatology values at obs locations in the fdbk files.
- 10:31 Changeset [11448] by
-
Clean svn keywords
- 10:29 Changeset [11447] by
-
Update of branch branches/UKMO/dev_r5518_new_runoff_coupling@9566 to r6232 for UKEP runs
- 10:17 Changeset [11446] by
-
Remove OASIS3 legacy code from cpl_oasis.F90. Tested to not change results.
- 09:18 Changeset [11445] by
-
#2216 revision of LBC chapter: main ones in bdy description and geometry
2019-08-16:
- 17:58 Changeset [11444] by
-
Delete branch as now merged into dev_r5518_GO6_package_FOAMv14.
- 13:10 Changeset [11443] by
-
Revert previous commit.
- 12:32 Changeset [11442] by
-
Introduction of stochastic physics in NEMO, based on Andrea Storto's code.
For details, see ticket https://code.metoffice.gov.uk/trac/utils/ticket/251.
2019-08-15:
- 18:19 Changeset [11441] by
-
Make test greater than zero.
- 16:43 Changeset [11440] by
-
Update after Dan's review.
- 13:03 Changeset [11439] by
-
Removed section which changed obs depths where depth shallower than some limit - if the depths are too shallow, the obs should be QCed out rather than assumed valid at a different depth.
- 11:35 Changeset [11438] by
-
Allow the user to turn off the creation of abort files.
Merge in changes from dev_r5518_GO6_package_abort_switch revison 10675.
- 10:44 Changeset [11437] by
-
Create a branch for including climatology in the fdbk files
2019-08-14:
- 16:16 Changeset [11436] by
-
Get rid of modification to sbc_cpl_init and sbc_cpl_alloc so that number of models is no longer hard coded in the latter. This must be leftover from CICE
- 14:45 Changeset [11435] by
-
Various corrections on chapters
Cleaning the indexes by fixing/removing wrong entries (or appending a ? to unknown items) and
improve the classification with new index definitions for CPP keys and namelist blocks:
- from \key{...} cmd, key_ prefix no longer precedes the index entry
- namelist block declaration moves from \ngn{nam...} to \nam{...} (i.e. \ngn{namtra\_ldf} → \nam{tra\_ldf}) The expected prefix nam is added to the printed word but not the index entry.
Now we have indexes with a better sorting instead of all CPP keys under 'K' and namelists blocks under 'N'.
Fix missing space issues with alias commands by adding a trailing backslash (\NEMO\, \ie\, \eg\, …).
There is no perfect solution for this, and I prefer not using a particular package to solve it.
Review the initial LaTeX code snippet for the historic changes in chapters
Finally, for readability and future diff visualisations, please avoid writing paragraphs with continuous lines.
Break the lines around 80 to 100 characters long
2019-08-13:
- 09:18 Changeset [11434] by
-
dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap :
Bug fix for trctrp.F90 and rewrite of trcrad.F90.
This version passes all SETTE tests involving PISCES, but fails the following idealised tests at this stage:
ISOMIP, OVERFLOW, LOCK_EXCHANGE.
2019-08-12:
- 21:44 Changeset [11433] by
-
Pre-implementation of new cover page and new headings style for reference manuals
Cover page
The layout of the frontpage has been completely redesigned,
a coloured banner has been added to emphasize the title and easily identify each manual
between them.
The chosen color for each document (blue for NEMO, gray for SI3 and green for TOP) will be
used throughout the manual for the links and in the chapter headings.
The list of authors (writers/editors/reviewers) for the version of the manual is given next to
the abstract, which is now included in the frontpage.
A link to an existing ORCID profile for the author precedes its name.
Few settings have been added to each definitions.tex in order to adjust the rendering of the cover page (vertical spaces above and below the title, a subtitle, the width for authors list and
abstract section)
Headings
- header: chapter number and title for even pages, same infos for section otherwise
- footer: name of the manual and page numbering with the total number of pages (reverse order between odd/even pages)
For the chapter heading, a new style 'Bjornstrup' from fncychap package is now use.
Abstract
Split the section in two paragraphs for all manuals
- Common description with almost the same sentences only customized by the general infos of the model
- Specific part for the characteristics of the model
Troubleshooting
As announced, I have introduced some icons from academicons and fontawesome packages.
It required to switch from pdflatex to xelatex for the compilation and it prevents from now
the building of the whole document.
Also the PDF generated does not look nice due to the font
Work in progress…
2019-08-09:
- 18:26 Changeset [11432] by
-
Added changes from Bijoy to set cpl_mslp in a namelist
- 18:08 Changeset [11431] by
-
Branch created for the coupling of MSLP from coupled system rathern than external source
- 17:17 Changeset [11430] by
-
Branch deleted, copied from the wrong branch
- 16:36 Changeset [11429] by
-
Branch created to add code to read coupled mslp from OASIS coupling files
- 15:52 Changeset [11428] by
-
Branch 2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps. Prettification of NST routines to reduce long lines and incease code readability. No functional changes. SETTE tested
- 15:44 Changeset [11427] by
-
dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap :
Restore independent time level indices for TOP in order to enable the option for
TOP to have a different timestep to OCE (nn_dttrc > 1). But note that this version of
the code only works for nn_dttrc=1. Also sort out the time-level swapping for OFF.
This commit passes the GYRE_PISCES and ORCA2_OFF_PISCES tests but fails restartability
and bit-comparison with the control for ORCA2_ICE_PISCES.
- 12:49 Changeset [11426] by
-
branches/2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps_rewrite_time_filterswap : Merge in changes from main IMMERSE branch.
2019-08-08:
- 19:15 Changeset [11425] by
-
ENHANCE-02_ISF_nemo : bug correction when oasis provide the ice shelf melt (ticket #2142)
- 18:08 Changeset [11424] by
-
Remove the MAX statementsin zdftke which were added as part of the STOPACK changes in order to reproduce the results from the standard GO6 branch.
- 16:02 Changeset [11423] by
-
ENHANCE-02_ISF_nemo : add UKESM ice sheet coupling method (ticket #2142)
- 15:40 Changeset [11422] by
-
#1791, merge with trunk
- 14:09 Changeset [11421] by
-
Branch 2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps. Minor changes to restore AGRIF restartability. All SETTE tests now passing except WAGRIF_DEMO_ST reproducibility which drifts after 11 timesteps (but always has on the NOC cluster)
- 13:40 Changeset [11420] by
-
Specify working precision for some new variables.
- 10:33 Changeset [11419] by
-
Reduce differences with the trunk by changing trabbl.F90 code.
2019-08-07:
- 16:20 Ticket #1636 ("Now" bottom tracer gradients in later diffusion with zps ?) closed by
-
fixed
- 14:25 Changeset [11418] by
-
Minor correction to make sure full vertical velocity is used in diagnostic output from diawri.F90 when using adaptive-implicit vertical advection (ln_zad_Aimp=.true.)
- 13:04 Changeset [11417] by
-
Fixed bug in zdftke code for stopack.
- 12:11 Changeset [11416] by
-
#1636: remove overwriting of before tracer gradients over partial cells by now values. Should make tracer diffusion more robust. Now density gradients are now computed in hpg_zps only.
- 11:08 Ticket #2305 (FCT monotonicy is lost with adaptive vertical advection) closed by
-
fixed
- 11:06 Ticket #2080 (bug in z tilde?) closed by
-
fixed
- 11:05 Changeset [11415] by
-
#2080, correct conditional statement
- 10:58 Changeset [11414] by
-
#2292, add ztilde diffusive fluxes in Courant number computation
2019-08-06:
- 17:59 Changeset [11413] by
- 17:57 Changeset [11412] by
-
Branch dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps: commit changes to VORTEX/MY_SRC/domvvl.F90 that were omitted from previous commits. This still fails restartability (in common with all AGRIF tests on this branch) but will compile and run.
- 17:08 Changeset [11411] by
-
#2305, a few corrections and comestic changes following Andrew's revision 11407
- 16:52 Ticket #2312 (potential negative surface Chl values with OTF interpolation in traqsr.F90) closed by
-
fixed - 16:50 Changeset [11410] by
-
bugfix for negative Chl values in tra_qsr, see #2312
- 16:44 Ticket #2312 (potential negative surface Chl values with OTF interpolation in traqsr.F90) created by
-
==== Context
OTF interpolation can create surface Chl negative values …
- 16:41 Changeset [11409] by
-
Fix compile errors.
- 16:20 Changeset [11408] by
-
Apply option to scale by sea ice fractions from the last coupling time.
- 15:36 Changeset [11407] by
-
Final documentation tweaks to the adaptive-implicit vertical advection section of chap_ZDF.tex and associated code changes. The code changes are mostly cosmetic or to align with the documentation but this does include a modified version of traadv_fct.F90 (thanks to Jerome) which correctly accounts for any implicit component of the vertical velocity when computing anti-diffusive fluxes for flux correction. The changes have null effect when ln_zad_Aimp is .false. and have been SETTE tested with ORCA2_ICE_PISCES with ln_zad_Aimp = .true.
- 15:26 Changeset [11406] by
-
Additional figures for the adaptive-implicit vertical advection section of the ZDF chapter (latex to follow shortly)
- 15:16 Changeset [11405] by
-
ticket #2195: read weights for blk using XIOS
- 14:12 New reply on Beginner created by
-
[GCC] Compilation of AGRIF_DEMO fails
- 11:15 Changeset [11404] by
-
Included control of the STOPACK options so that it can be switched on/off with the main ln_stopack logical.
- 10:37 Ticket #2311 (minor bug in code to do Euler timestep in dyn_nxt) created by
-
BE CAREFUL !!! Due to dynamic behaviour of this ticket creation page, it …
- 10:14 Ticket #2310 (bug in timestepping in OFF?) created by
-
BE CAREFUL !!! Due to dynamic behaviour of this ticket creation page, it …
2019-08-05:
- 19:14 Changeset [11403] by
-
ENHANCE-02_ISF_nemo : add comments, renaming file (AGRIF), add isfload module (ticket #2142)
- 17:26 Changeset [11402] by
-
debug previous commit
- 16:00 New reply on Beginner created by
-
[GCC] Compilation of AGRIF_DEMO fails
- 14:36 Changeset [11401] by
-
add new functionality for initialization. Now you can use a simplified restart for starting a simulation (as for the initialization)
- 10:54 Changeset [11400] by
-
Getting it to compile.
- 10:50 Changeset [11399] by
-
Remove this branch as it is replaced by another.
2019-08-02:
- 18:43 Changeset [11398] by
-
dev_r10984_HPC-13 : add nammpp parameter ln_listonly, see #2285
- 18:31 Changeset [11397] by
-
rewrite iceistate.F90, add new variables (optional) for input fields, and prepare the code for a simplified ice restart
- 16:28 Changeset [11396] by
-
branch for ticket #2195
- 16:19 Changeset [11395] by
-
ENHANCE-02_ISF_nemo : Initial commit isf simplification (add ISF directory, moved isf routine in and split isf cavity and isf parametrisation, …) (ticket #2142)
- 15:14 Changeset [11394] by
-
First implementation of STOPACK in the GO6 package branch.
- 14:32 Changeset [11393] by
-
Create a branch for including stochastic model perturbations
- 14:24 New topic on Beginner created by
-
[GCC] Compilation of AGRIF_DEMO fails
- 11:07 Changeset [11392] by
-
dev_r10984_HPC-13 : merge DYN with BDY@11391, see #2308
- 11:03 Changeset [11391] by
-
dev_r10984_HPC-13 : flowri compiling without key_iomput, see #2285
- 10:43 Changeset [11390] by
-
dev_r10984_HPC-13 : merge DYN with BDY @11389, see #2308
- 09:51 Changeset [11389] by
-
dev_r10984_HPC-13 : add timing of each time step, see #2285
2019-08-01:
- 18:09 Changeset [11388] by
-
Add adaptive-implicit vertical advection section to ZDF chapter. May still need a few tweaks next week and refers to an updated traadv_fct.F90 which is not yet submitted. Finals tests are in progress
- 17:54 Changeset [11387] by
-
Additional figures for the adaptive-implicit vertcal advection section of the ZDF chapter (to be submitted)
- 17:26 Changeset [11386] by
-
#2216, correct description of grid scale dependent mixing coefficient
- 17:25 Ticket #2309 (print statements in iceberg model) created by
-
==== Context
ORCA2_ICE_PISCES sette test prints information about time …
- 14:05 Changeset [11385] by
-
remove key_floats from the code and replace it by a logical ln_floats
- 09:14 New topic on Jobs created by
-
[permanent] NEMO System Team Scientist at Met Office | Closing 18 Aug. 2019
2019-07-31:
- 18:05 Changeset [11384] by
-
Included Andrea Storto's STOPACK code into NEMO3.6 branch.
- 17:59 Changeset [11383] by
-
do not compile diadct with key_agrif (it fails)
- 17:08 Changeset [11382] by
-
cleaning diags
- 16:44 Changeset [11381] by
- 15:56 Changeset [11380] by
-
dev_r10984_HPC-13 : adding extra halos in dyn_spg_ts is now possible, only works with a single halo when used with tide or bdy, see #2308
- 15:49 Changeset [11379] by
-
Create a branch for including stochastic model perturbations
- 15:39 Ticket #2308 (Optimization of the communications in DYN) created by
-
==== Summary
||=Action || HPC-13_IRRMANN_DYN_optimization …
- 14:54 Changeset [11378] by
-
creating new branch from dev_r10984_HPC-13_IRRMANN_BDY_optimization
- 14:26 Changeset [11377] by
-
clean rheology, add a couple of outputs and remove landfast_home option
- 11:50 Changeset [11376] by
-
add variables in context_nemo.xml for all config
- 11:49 Changeset [11375] by
-
add variables in context_nemo.xml for all config
- 09:30 Changeset [11374] by
-
remove inopportune stop related to harmonic diags
2019-07-30:
- 17:33 Changeset [11373] by
-
dev_r10984_HPC-13 : timing working with more than 9999 cores, see #2285
- 16:38 Changeset [11372] by
-
Small bug fix, local variable calculated after it is used
just change order to make sure it is calculated in time
- 16:16 Changeset [11371] by
-
continue cleaning the ice outputs
- 10:56 Changeset [11370] by
-
Correction. oce only fluxes shoudl be just for open ocean. Setting sea ice fluxes to zero.
2019-07-29:
- 18:32 Changeset [11369] by
-
Initialise some missing ice fluxes.
- 18:14 Changeset [11368] by
-
Make branch.
- 18:10 Changeset [11367] by
-
More print statements including fix
- 17:42 Changeset [11366] by
-
complete previous commit with doc update
- 17:33 Changeset [11365] by
-
Remove key_diaharm and key_diadct. Replace namdct by nam_diadct
- 16:54 Changeset [11364] by
-
dev_r10984_HPC-13 : update BENCH to be more robust, see #2285
- 16:47 Changeset [11363] by
-
dev_r11265_ABL : see #2131
- fix xml files to get xios working with ABL
- introduce rdt_abl = rdt * nn_fsbc to get ABL working with nn_fsbc > 1
- does not change results compared to rev11360 with nn_fsbc = 1
- 13:54 Changeset [11362] by
-
debug the ice output by adding a missing value to the outputed fields. Unfortunately this method imposes a value of 1.e20 where there is no ice, which is annoying when using ncview for example, but this is the only way (from what I know) to output averages
- 11:26 Changeset [11361] by
-
First version of the new observation branch - it compiles, but has not been tested
