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2021-11-26:

21:23 Changeset [15546] by cdllod

update namelist_cfg

18:51 Changeset [15545] by acc

Add missing declaration to src/TOP/PISCES/SED/trosk.F90 which prevents compilation with debug settings

17:07 2021WP/VLD-09_RPerson_Antarctic_ice_Sheet_Fe_Source edited by rlod
(diff)
17:03 2021WP/VLD-09_RPerson_Antarctic_ice_Sheet_Fe_Source edited by rlod
(diff)
17:01 2021WP/VLD-09_RPerson_Antarctic_ice_Sheet_Fe_Source edited by rlod
(diff)
16:58 Fig2.2.png attached to 2021WP/VLD-09_RPerson_Antarctic_ice_Sheet_Fe_Source by rlod
16:57 Fig1.png attached to 2021WP/VLD-09_RPerson_Antarctic_ice_Sheet_Fe_Source by rlod
16:52 Changeset [15544] by vsmart

Merge changes for running from the Fortran cap

16:37 Fig3.png attached to 2021WP/VLD-09_RPerson_Antarctic_ice_Sheet_Fe_Source by rlod
16:35 Fig2.png attached to 2021WP/VLD-09_RPerson_Antarctic_ice_Sheet_Fe_Source by rlod
16:34 Fig1.2.png attached to 2021WP/VLD-09_RPerson_Antarctic_ice_Sheet_Fe_Source by rlod
16:34 2021WP/VLD-09_RPerson_Antarctic_ice_Sheet_Fe_Source edited by rlod
(diff)
16:31 Changeset [15543] by vsmart

Create new branch from head of coupled_stage3

15:51 Changeset [15542] by emmafiedler

Exponential ridge ice redistribution

15:38 Changeset [15541] by techene

#2695 #2385 add cpp keys for qco+isf

12:27 Changeset [15540] by sparonuz

Mixed precision version, tested up to 30 years on ORCA2.

2021-11-25:

16:58 2021WP/VLD-09_RPerson_Antarctic_ice_Sheet_Fe_Source edited by rlod
(diff)
15:35 Changeset [15539] by lovato

remove CMCC obsolote arch files

15:34 Changeset [15538] by lovato

remove CMCC obsolote arch files

12:47 Changeset [15537] by jcastill

Changes compatible with the ticket (not tested in this revision)

11:14 Ticket #2609 (HPC-05_Mocavero_MPI3) closed by francesca
fixed
11:05 Ticket #2610 (HPC-06_Epicoco_Halo_Management) closed by francesca
fixed
11:04 Ticket #2608 (HPC-04_Mele_Loop_Fusion) closed by francesca
fixed
10:58 Ticket #2607 (HPC-03_Mele_Comm_Cleanup) closed by francesca
fixed
10:56 2021WP/HPC-05_Mocavero_MPI3 edited by francesca
(diff)
10:51 Changeset [15536] by jcastill

Branch to work on ticket #2750

10:46 Ticket #2750 (Coupled mslp in inverse barometer ssh) created by jcastill
[…] ==== Context The inverse barometer ssh is calculated from the …
10:30 Changeset [15535] by jcastill

Changes as proposed in the ticket description

10:25 Changeset [15534] by jcastill

Branch to work in ticket #2749

10:15 Ticket #2749 (Wave coupling only: diurnal cycle reconstruction error) created by jcastill
[…] ==== Context When running in coupled mode but not coupling to an …

2021-11-24:

17:02 Ticket #2613 (VLD-03_Aimie_Moulin_Wave_Coupling_TestCase) closed by amoulin
fixed
15:35 Tag change on System Team/Agenda/2021-11-25 by smasson
Tags VC added
13:07 Changeset [15533] by cdllod

renamed two constants

12:47 Changeset [15532] by techene

#2605 #2715 : version in dev (still buggy)

2021-11-23:

19:09 Changeset [15531] by vancop

Bugfixed VP rheology for trunk

16:09 Changeset [15530] by clem

add comment to better understand

16:00 Changeset [15529] by techene

#2695 : isf+qco are now compatible

14:57 Ticket #2482 (MO GO8 for GPU) closed by andmirek
fixed: No additional changes planned in this branch.
14:56 Ticket #2333 (calls to iom_put) closed by andmirek
wontfix
14:56 Ticket #2331 (restructure ice_dyn_rhg_evp) closed by andmirek
wontfix
14:55 Ticket #2314 (NEMO_SI3_decoupled) closed by andmirek
wontfix
14:53 Ticket #2655 (SETTE with CRAY compiler) closed by andmirek
fixed
14:52 Ticket #2631 (Use XIOS to read configuration data) closed by andmirek
wontfix: An attempt to write a simple program to reproduce this issue failed. …
14:49 Ticket #2462 (restart read write with XIOS) closed by andmirek
fixed
09:05 2021WP/VLD-02_Aimie_Moulin_Med_Wave_Coupling edited by amoulin
(diff)
08:40 2021WP/VLD-02_Aimie_Moulin_Med_Wave_Coupling edited by amoulin
(diff)

2021-11-22:

20:44 2021WP/VLD-02_Aimie_Moulin_Med_Wave_Coupling edited by amoulin
(diff)
20:43 2021WP/VLD-02_Aimie_Moulin_Med_Wave_Coupling edited by amoulin
(diff)
18:28 Ticket #2748 (Physical significance of TKE penetration not scaled by the model time step ...) created by jchanut
==== Context On TKE additional source term (e.g. nn_etau>0 in namzdf_tke) …
17:58 Changeset [15528] by lovato

Update CMCC X64_ZEUS batch script (fix detached mode)

17:10 2021WP/VLD-03_Aimie_Moulin_Wave_Coupling_Test Case edited by amoulin
(diff)
17:05 2021WP/VLD-03_Aimie_Moulin_Wave_Coupling_Test Case edited by amoulin
(diff)
12:46 2021WP/HPC-06_Epicoco_Halo_Management edited by francesca
(diff)
12:44 Ticket #2648 (VLD-06_UKMO_GO8) closed by deazer
invalid
12:42 2021WP/HPC-04_Mele_Loop_Fusion edited by francesca
(diff)
11:34 2021WP/PHY-01_de Lavergne_tidal_mixing created by cdllod
11:34 Tag change on 2021WP/PHY-01_de Lavergne_tidal_mixing by cdllod
Tags WP added

2021-11-21:

11:10 Changeset [15527] by vancop

Optimize comms for VP

2021-11-19:

13:36 2021WP/IOM-04_Copsey_0D_icesheet_mass_coupling edited by dancopsey
(diff)
13:34 2021WP/IOM-03_Copsey_1D_river_coupling edited by dancopsey
(diff)
13:32 2021WP/SI3-01_Copsey_coupled_penetrating_radiation edited by dancopsey
(diff)
11:19 Changeset [15526] by cdllod

adjustments of namelist_ref and code to read only one netcdf file

10:34 Changeset [15525] by cguiavarch

Bug fix: when using ln_rnf_temp temperature of runoff > 0 (runoff are considered as freshwater and should not be below 0)

10:28 Changeset [15524] by cguiavarch

Adding T and S diagnostics when using linear equation of state (seos)

10:17 Ticket #2747 (averaged Kz in diawri.F90) created by cperruche
==== Context correction specific to the write of averaged Kz in …
10:10 Ticket #2746 (correction specific to BIO in 1D configuration: density has to be computed ...) created by cperruche
#!correction specific to BIO in 1D configuration ==== Context the …
09:14 Changeset [15523] by vancop

Some cleaning of lbclnks in VP routine

2021-11-18:

20:13 Ticket #2745 (zdfric not compatible with p_sh2 calculation) created by amoulin
[…] ==== Context ... ==== Analysis Richardson number vertical …
19:53 Ticket #2744 (Manual updates for wave-coupling interaction) closed by amoulin
fixed
19:52 Changeset [15522] by amoulin

Manual updates for wave-coupling interaction - ticket #2744

19:49 Ticket #2744 (Manual updates for wave-coupling interaction) created by amoulin
[…] ==== Context Update to the SBC chapter and the TKE chapter in …
16:56 Changeset [15521] by dbruciaferri

Correct mixed-layer diagnostic to be consistent with latest GO8 devs - from fcm:nemo.xm/NEMO/branches/UKMO/NEMO_4.0.4_CO9_package-mix-lyr@15506

16:35 Changeset [15520] by sparonuz

fix name of variables mispelled in subprogram declaration. Removed file added for error.

15:17 Ticket #2743 (Bug: OBS does not seem to take into account the eos used in NEMO) created by mathiot
[…] ==== Context OBS interpolates NEMO T and S onto the obs location. …
12:16 Ticket #2742 (Bug: OBStools does not compile) created by mathiot
[…] ==== Context OBStools from the trunk does not compile. ==== …

2021-11-17:

15:03 Ticket #2741 (bug: SAO does not compile) created by mathiot
[…] ==== Context I tried to use SAO in the trunk and it does not …
10:51 Ticket #2642 (possible bugs: salflx output unit and ln_rnf_icb has no effect) closed by mathiot
fixed: Thank you Clem for the fix in NEMO The remaining general point mentioned …
10:49 Ticket #2740 (For better management of ln_rnf_icb) created by mathiot
[…] ==== Context ln_rnf_icb is an option to add a climatology of icb …

2021-11-16:

18:06 Changeset [15519] by edblockley

Trunk: Correction to rheology convergence timeseries output to ensure that all iterations on last time-step are output and that the time-axis only includes point from the current run cycle (i.e., starting from nit000+1). Replicated from 4.0-HEAD (changeset:15518) and extended to include EAP and VP routines.

17:57 Changeset [15518] by edblockley

Correction to rheology convergence timeseries output to ensure that all iterations on last time-step are output and that the time-axis only includes point from the current run cycle (i.e., starting from nit000+1)

15:48 Changeset [15517] by cdllod

zdfiwm optimization by Clement

15:40 Changeset [15516] by vancop

fixes in diagnostics

14:15 Changeset [15515] by vancop

some bugfixes on diagnostics

09:58 Changeset [15514] by techene

#2605 #2715 debug

2021-11-15:

18:31 Changeset [15513] by techene

#2605 RK3 : correct dia_ptr initialisation and add a switch for diags/trends logicals

18:22 Changeset [15512] by techene

#2605 RK3 : add logicals to deactivate trends, dianogstics and outputs at stages 1 & 2

16:46 Changeset [15511] by techene

#2715 RK3 & TOP: no interpolation of rnf

16:33 Changeset [15510] by techene

#2715 RK3 & TOP: musl adv scheme is only called at stage 3

15:36 Changeset [15509] by jcastill

Updates for FABM 1.0

15:32 Changeset [15508] by jcastill

Corrections for FABM 1.0

15:22 Changeset [15507] by emmafiedler

Working version of Rothrock ice strength

11:33 Changeset [15506] by jcastill

Change name of namelist parameters in namzdf_mldzint

11:03 Changeset [15505] by jcastill

Changes in zdfmxl as in 4.0.1 version of the branch: NEMO/branches/UKMO/r12083_mix-lyr_diag@12836

10:43 Changeset [15504] by jcastill

Branch to change the mix layer depth diagnostics as it was in version 4.0.1, as the present version does not work

10:15 Changeset [15503] by jchanut

#2737, correct ssh adjustment induced by sea-ice in case of interpolation from parent (set it to 0)

2021-11-14:

20:43 Changeset [15502] by hadjt

DIA/diaharm_fast.F90

Nemo compile key dependence removed

Commented code added to help start tidal ellipse paramter calculation (how to copy U and V onto the T grid.

20:40 Changeset [15501] by hadjt

DIA/diaharm_fast.F90

Working version.
Tidal residual output, i.e. ssh/u2d/v2d etc offset

2021-11-12:

19:02 Changeset [15500] by hadjt

diaharm_fast.F90

Found an important bug. it wasn't set up for monthly cycles, so was only reseting the "seconds of the day" count once a month. Therefore, the v0tide was introducing a jump every day, so was fitting poorly.

It is still not working properly, as the amplitudes output are too high, and the phase maps are not correct.

10:23 Changeset [15499] by vancop

northfold and stress diagnostic issues in VP rheology

08:20 NDS_2023_2027_v1.0.pdf attached to Scientific Advisory Committee by mikebell
First draft of 2023-2027 NEMO Development Strategy (11 Nov 2021)
08:18 NDS_2023_2027_v1.0.pdf attached to Developers Committee by mikebell
First draft of 2023-2027 NEMO Development Strategy (11 Nov 2021)

2021-11-11:

14:55 Scientific Advisory Committee edited by mikebell
(diff)
14:54 Changeset [15498] by jcastill

Copy of branch branches/UKMO/r6232_obs_oper_update@11239 to implement changes for FABM 1.0

14:13 Developers Committee edited by mikebell
(diff)
14:12 Developers Committee edited by mikebell
(diff)
14:12 Changeset [15497] by dford

Updates following review.

14:10 Developers Committee edited by mikebell
(diff)
13:02 Changeset [15496] by clem

trunk: solve ticket #2737. The ssh is now adjusted to the init of sea ice, hence the total oce+ice mass remains unchanged across simulations. This applies to both levitating and embedded sea ice. Therefore, results from the configurations with sea ice are changed

2021-11-10:

17:18 Changeset [15495] by clem

4.0-HEAD: solve ticket #2737. The ssh is now adjusted to the init of sea ice, hence the total oce+ice mass remains unchanged across simulations. This applies to both levitating and embedded sea ice. Therefore, results from the configurations with sea ice are changed

17:06 Changeset [15494] by clem

trunk: correct output for rheology

17:02 Changeset [15493] by clem

4.0-HEAD: correct output for rheology

15:16 Changeset [15492] by jcastill

Fix to coupled runs: solar radiation coupling

14:48 Changeset [15491] by hadjt

DIA/diaharm_fast.F90

Harmonic analysis with restarts.

Working, but perhaps needs additional work

12:33 Changeset [15490] by hadjt

SBC/tide_mod.F90

Adding updated tide module to handle 360 day tides. This is working, but needs some more work.

Care need for compress option, as unpublished, work in progress. Worked needed to set phase offsets (in v0tide).

10:18 Changeset [15489] by jchanut

Remove an useless computation in 1-way

2021-11-09:

16:53 Changeset [15488] by dford

Add a check on altbias file.

16:27 Changeset [15487] by dford

Remove some comments and add some spaces.

11:42 Changeset [15486] by dcarneir

SIC assimilation interface (IAU) for SI3

11:26 Changeset [15485] by cetlod

DEV_PISCO : Various bugfix

11:19 Changeset [15484] by cetlod

Change C/N and C/P ratio in output to be consistent with PISCES sources

10:52 Changeset [15483] by timgraham

Fix type error

2021-11-08:

21:02 Changeset [15482] by cetlod

Minor bugfix

20:51 Changeset [15481] by dcarneir

second round of review for IAU SIC code with SI3

16:02 Working Groups/Kernel edited by mikebell
(diff)
16:00 Vertical_Coordinates_ALE_LaruentDebreu_Nov_2021.pdf attached to Working Groups/Kernel by mikebell
Laurent Debreu's talk on direction splitting with ALE coordinates November …
15:51 Changeset [15480] by jcastill

Changes as in the git branch NEMO-FABMv1-ERSEM

12:42 Changeset [15479] by jcastill

Copy of the AMM15 collate branch where we will update the ERSEM-FABM code for further development and research

12:00 Changeset [15478] by timgraham

Functional change to prevent negative values

11:56 Changeset [15477] by timgraham

Prevent model using negative solar radiation values from coupling

10:31 Changeset [15476] by dcarneir

Code review for IAU SIC with SI3

2021-11-05:

15:14 Changeset [15475] by cdllod

corrected typo in ldftra.F90

14:32 Changeset [15474] by cdllod

updated ln_mevar parameter

12:40 Changeset [15473] by dford

Use cool skin SST in air-sea CO2 flux calculations.

10:30 Tag change on System Team/Agenda/2021-11-17 by gsamson
Tags VC added

2021-11-04:

17:35 Changeset [15472] by vancop

Further fixes to VP rheology

17:28 Changeset [15471] by jchanut

#1791: correct thicknesses at last level with vvl. This ensures total depth is correct (eg matches depth at rest + sea level anomaly) which may otherwise induce unstabilities, and unconsistencies with external mode. The correction is active over steps (no change with purely s-coordinates or in between two adjacent z-levels with partial cells). Contrary to qco formulation, the vvl scheme can lead to negative thicknesses at velocity points, even if total depth at T-points is positive. This is a rare case which is not taken into account in this correction.

16:45 Ticket #2739 (diurnal cycle in TOP) created by cperruche
[…] ==== Context Boolean l_trcdm2dc depends on boolean ln_dm2dc …
16:43 Changeset [15470] by dford

Branch for using skin SST in air-sea CO2 flux calculations.

2021-11-03:

18:14 Tag change on System Team/Agenda/2021-12-02 by clevy
Tags VC added
18:13 Tag change on System Team/Agenda/2021-12-01 by clevy
Tags VC added
16:26 Tag change on System Team/Agenda/2021-11-04 by gsamson
Tags VC added
12:33 Ticket #1791 (Vertical scale factor interpolation with key_vvl) reopened by jchanut

2021-11-02:

17:50 Changeset [15469] by jcastill

Comment some lines that caused out of bounds errors, as are not used in the present configurations - the main problem is a merge conflict with the Met Office CO9 branch

13:36 Changeset [15468] by jpalmier

trc abort fix 2

10:56 Changeset [15467] by cdllod

updated namzdf_iwm in namelist_ref

10:48 Changeset [15466] by cdllod

updated and simplified zdfiwm routine

2021-11-01:

17:02 Changeset [15465] by jcastill

Small fix: add some parameters to a namelist

2021-10-29:

20:10 Changeset [15464] by jcastill

Remove dependency with XIOS 2.5 so that we can run in coupled mode with WWIII 4.18 at the Met Office

16:39 Changeset [15463] by dford

CO2 flux based on input significant wave height.

16:14 Ticket #2738 (mass of the ice+ocean system depends on the init of ice) closed by clem
duplicate
16:13 Ticket #2738 (mass of the ice+ocean system depends on the init of ice) created by clem
==== Analysis The mass of the "ocean + ice" system depends on the …
16:05 Ticket #2737 (mass of the ice+ocean system depends on the init of ice) created by clem
==== Analysis The mass of the "ocean + ice" system depends on the …
15:48 Changeset [15462] by annkeen

Minor correction

12:46 Changeset [15461] by acc

Minor changes to print statements in icb python tools to make then python3 compatible

11:35 Changeset [15460] by cetlod

Minor changes in TOP/PISCES namelist

10:19 Changeset [15459] by cetlod

Various bug fixes and more comments in PISCES routines ; sette test OK in debug mode, nn_hls=1/2, with tiling ; run.stat unchanged ; of course tracer.stat different

2021-10-28:

17:12 Changeset [15458] by clem

4.0-HEAD: recalculate vertical scale factors in istate.F90 for wetting and drying and user defined configurations (related to change of ssh). Should solve ticket #2736 for 4.0. Not sure we also need to change the trunk?

15:12 Changeset [15457] by lovato

update trcopt array names with coding practices and make elements more flexible

13:43 Users edited by sciliberti
(diff)
12:15 Changeset [15456] by hadjt

Preparation for change in SBC/tide_mod.F90
comments added to SBC/tide_mod.F90 (and BDY/bdydyn2d.F90).

11:23 Changeset [15455] by jcastill

Code for uncoupled configurations, some changes for coupling may be needed yet - merged branch branches/UKMO/r14075_cpl-pressure@15423

2021-10-27:

20:03 Changeset [15454] by smueller

Addition of tangent-linear and adjoint model time-stepping loops and of a supporting structure for the optional inclusion of external NEMOTAM-related source code

18:28 Ticket #2736 (vertical scale facors not recalculated when ssh/=0) created by clem
I think there is a problem with vertical scale factors in istate.F90 when …
18:20 Changeset [15453] by smueller

Suppression of tangent-linear model output unless explicitly activated

17:41 Changeset [15452] by dford

Branch for experimenting with using input significant wave height in air-sea CO2 flux calculations.

16:46 Changeset [15451] by clem

4.0-HEAD only: change vertical scale factors for embedded sea ice as proposed in ticket #2487.

16:32 Changeset [15450] by cetlod

Some updates to make the PISCES/SED module usable. Totally orthogonal with no effect on other parts of the code

15:01 Changeset [15449] by cetlod

dev_PISCO : minor bugfixes

13:27 Changeset [15448] by smueller

Alteration of the nonlinear-model-trajectory filename format

12:25 Ticket #2735 (Bug in nn_stocklist behaviour in some cases) created by timgraham
[…] ==== Context When providing a list of restart timesteps to the …
11:52 Changeset [15447] by timgraham

Branch to test fixes for nn_stocklist behaviour

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