Changes between Version 21 and Version 22 of 2011WP/2011Action_institutions_LOCEAN


Ignore:
Timestamp:
2011-03-09T16:58:27+01:00 (10 years ago)
Author:
cetlod
Comment:

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  • 2011WP/2011Action_institutions_LOCEAN

    v21 v22  
    1010||XX||LOCEAN-IPSL,Paris||100||MyOcean 1 year contract (begin in march 2011)|| 
    1111||Dorotea Iovino||LOCEAN-IPSL,Paris||100||Is-Enes 1 year contract (begin in march 2011)|| 
    12 ||Christian Ethé||IPSL, Paris||50||CNRS|| 
     12||Christian Ethé||IPSL, Paris||50||CNRS|| 
    1313||Simona Flavoni||LOCEAN-IPSL, Paris||100||CNRS|| 
    14 ||Claire Lévy||LOCEAN-IPSL, Paris||100||NEMO project Manager|| 
    15 ||Bénédicte Lemieux||LEGI - Grenoble||50||CNRS 2 years contract        (Arrived in Oct. 2009)|| 
    16 ||Sébastien Masson||LOCEAN-IPSL, Paris||50||CNAP|| 
     14||Claire Lévy||LOCEAN-IPSL, Paris||100||NEMO project Manager|| 
     15||Bénédicte Lemieux||LEGI - Grenoble||50||CNRS 2 years contract        (Arrived in Oct. 2009)|| 
     16||Sébastien Masson||LOCEAN-IPSL, Paris||50||CNAP|| 
    1717||Marie-Alice Foujols||IPSL, Paris||5||CNRS|| 
    1818||Gurvan Madec||LOCEAN-IPSL, Paris||30||NEMO Scientific Leader (CNRS)|| 
     
    2222Summary: 
    2323 
    24 ||Action||Brief description||Status||Branch name||Trac ticket n°||Wiki page name||Reviewer(s)||Review status||Ready for merge|| 
     24||Action||Brief description||Status||Branch name||Trac ticket n°||Wiki page name||Reviewer(s)||Review status||Ready for merge|| 
    2525||LOCEAN-1||Mpp evolution|||||||||||||||| 
    2626||LOCEAN-2||Coupled interface|||||||||||||||| 
     
    4343 
    4444---- 
    45 === '''LOCEAN .1 MPP evolution' (continuation''''''' === 
     45=== '''LOCEAN .1 —MPP evolution' (continuation''''''' === 
    4646  '''Motivation: ''' Improve the mpp behaviour of NEMO by playing with width of the overlap area, the number of communication,[[BR]] '''Status :''' We are now using 1 point overlap area. Possibility to use more exists but is not compatible with the North Fold condition [[BR]] '''Main tasks :'''    [[BR]] (1)switch to a 2 points with overlap area[[BR]] (2)suppress useless communication (there should be only 2 for the internal mode)[[BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]]  '''Deadline:''' [[BR]]  '''Priority:''' high[[BR]]  '''Depends on''':choice of dynamic/static allocation mode[[BR]] '''Principal Investigator : '''Rachid Benshila (rachid.benshila@locean-ipsl.upmc.fr) [[BR]] 
    4747 
    48 === '''LOCEAN .2 Coupled interface (end)''' === 
     48=== '''LOCEAN .2 —Coupled interface (end)''' === 
    4949  '''Motivation: The current coupled surface module only work with LIM2. Its functionality should be extended to the cases where sea ice is not used (for example with region coupled configuration), and where a multi category sea-ice component is used (LIM3 or CICE).''' [[BR]] '''Status :'''Preliminary work has been done for CICE [[BR]] '''Main tasks :'''    [[BR]] (1) documentation of the coupled surface module [[BR]] (2) coupling with multi-categories ice model (coll. UKMO)[[BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]] '''Priority:'''[[BR]] '''Depends on:'''collaboration with UKMO [[BR]] '''Principal Investigator : '''Sebastien Masson (smasson@locean-ipsl.upmc.fr)  [[BR]] 
    5050 
    51 === '''LOCEAN .3 Merge TRA-TRP (end)''' === 
    52   '''Motivation: '''Merge of active and passive tracer advection/diffusion modules to avoid duplication of almost identical modules[[BR]] '''Status :''' The merge has been done for transport routines, using a switch to avoid the suppression of T and S array at this time[[BR]] '''Main tasks :'''    [[BR]] (1) validate the compatibility of vvl with biogeochemistry [[BR]] (2) suppress T and S array to switch to 4d arrays[[BR]] (3) apply the merge for OBC, BDY, AGRIF[[BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]] '''Priority:'''high[[BR]] '''Depends on:''' [[BR]] '''Principal Investigator : '''Christian Ethé (cetlod@ipsl.jussieu.fr)   [[BR]] 
     51=== '''LOCEAN .3 —Merge TRA-TRP (end)''' === 
     52  '''Motivation: '''Merge of active and passive tracer advection/diffusion modules to avoid duplication of almost identical modules[[BR]] '''Status :''' The merge has been done for transport routines, using a switch to avoid the suppression of T and S array at this time[[BR]] '''Main tasks :'''    [[BR]] (1) validate the compatibility of vvl with biogeochemistry [[BR]] (2) suppress T and S array to switch to 4d arrays[[BR]] (3) apply the merge for OBC, BDY, AGRIF[[BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]] '''Priority:'''high[[BR]] '''Depends on:''' [[BR]] '''Principal Investigator : '''Christian Ethé (Christian.Ethe@ipsl.jussieu.fr)   [[BR]] 
    5353 
    54 === '''LOCEAN .4 reference manuels (continuation)''' === 
    55   '''Motivation: '''paper documentation a never-ending story (dixit G. Madec)[[BR]] '''Status :''' [[BR]]  '''Main tasks :'''    [[BR]] (1) Create the TRP documentation using Latex (similar to the NEMO ocean engine documentation)[[BR]] (2) review of the written documentation (NOCS team)  '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]]  '''Deadline:''' [[BR]]  '''Priority:'''[[BR]]  '''Depends on:''' LOCEAN.3 [[BR]] '''Principal Investigator : '''Christian Ethé (cetlod@ipsl.jussieu.fr)   [[BR]] 
     54=== '''LOCEAN .4 —reference manuels (continuation)''' === 
     55  '''Motivation: '''paper documentation a never-ending story (dixit G. Madec)[[BR]] '''Status :''' [[BR]]  '''Main tasks :'''    [[BR]] (1) Create the TRP documentation using Latex (similar to the NEMO ocean engine documentation)[[BR]] (2) review of the written documentation (NOCS team)  '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]]  '''Deadline:''' [[BR]]  '''Priority:'''[[BR]]  '''Depends on:''' LOCEAN.3 [[BR]] '''Principal Investigator : '''Christian Ethé (Christian.Ethe@ipsl.jussieu.fr)   [[BR]] 
    5656 
    57 === '''LOCEAN .5 updating OBC''' === 
     57=== '''LOCEAN .5 —updating OBC''' === 
    5858  '''Motivation: '''OBC needs to be revisited to work with explicit free surface. It could be the opportunity to rewrite the whole routine, using fldread for OBC inputs, and a generalized treatment for all boundaries, to be able to deal with different boundaries schemes.[[BR]] '''Status :''' Two way to handle OBC are coexisting in the system.  in addition, the way to handle input oceanic data is quiet painful[[BR]] '''Main tasks :'''   [[BR]] (1) write specifications  [[BR]] (2) write input routine based on fldread [[BR]]  (3) write a generic routine [[BR]] '''Science Reviewer:''' [[BR]]  '''System Reviewer:''' [[BR]]  '''Deadline:''' spring 2012[[BR]] '''Priority:'''[[BR]]   '''Depends on:''' successful shared work with Mercator and UKMO[[BR]] '''Principal Investigator : ''' Rachid Benshila (rachid.benshila@locean-ipsl.upmc.fr)    [[BR]] 
    5959 
    60 === '''LOCEAN .6 update the IOSERVER''' === 
     60=== '''LOCEAN .6 —update the IOSERVER''' === 
    6161  '''Motivation: '''the IOser is being rewritten to sos olve performance issues .[[BR]] '''Status :''' the current IOserver runs but can't we use for MPP optimization purposes[[BR]] '''Main tasks :'''    [[BR]] if finished, integrate the new version  [[BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]]  '''Priority:'''[[BR]]  '''Depends on:''' work done on new IOserver at IPSL[[BR]] '''Principal Investigator : ''' Sebastien Masson (smasson@locean-ipsl.upmc.fr)   [[BR]] 
    6262 
    63 === '''LOCEAN .7 rewrite NVTK''' === 
     63=== '''LOCEAN .7 —rewrite NVTK''' === 
    6464  '''Motivation: '''the test suite has to be totally revisited for portability and an easy addition of new tests .[[BR]] '''Status :''' The compilation system has been rewritten but doesn't include tests[[BR]]  '''Main tasks :'''    [[BR]] (1) definition of the functionalities [[BR]] (2) implementation[[BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]] '''Priority:'''[[BR]] '''Depends on:''' feedback from others members of the team[[BR]] '''Principal Investigator : ''' Simona Flavoni (simona.flavoni@locean-ipsl.upmc.fr)   [[BR]] 
    6565 
    66 === '''LOCEAN .8 new vertical coordinate (continuation)''' === 
     66=== '''LOCEAN .8 —new vertical coordinate (continuation)''' === 
    6767  '''Motivation: '''introduce an arbitrary  lagrangian eulerian coordinate to reduce spurious diapycnal mixing due to high frequency vertical variations[[BR]] '''Status :''' done in a phd thesis, see Leclair 2010[[BR]] '''Main tasks :''' update for the new NEMO version   [[BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]] '''Priority:'''[[BR]] '''Depends on:''' [[BR]] '''Principal Investigator : ''' Matthieu Leclair (matthieu.leclair@locean-ipsl.upmc.fr)   [[BR]] 
    6868 
    69 === '''LOCEAN .9 Agrif on vertical''' === 
     69=== '''LOCEAN .9 —Agrif on vertical''' === 
    7070  '''Motivation: '''Be able to use different vertical grid definition in the different zooms .[[BR]] '''Status :'''  Development has been done at LJK and LPO on previous version of NEMO [[BR]]  '''Main tasks :'''    [[BR]] phasing  in the last version of NEMO [[BR]] '''Science Reviewer:''' [[BR]]  '''System Reviewer:''' [[BR]]   '''Deadline:''' [[BR]]   '''Priority:'''low[[BR]]   '''Depends on:''' [[BR]] '''Principal Investigator : ''' Rachid Benshila (rachid.benshila@locean-ipsl.upmc.fr)   [[BR]] 
    7171 
    72 === '''LOCEAN .10 Agrif on sea-ice''' === 
     72=== '''LOCEAN .10 —Agrif on sea-ice''' === 
    7373  '''Motivation: '''Be able to use AGRIF on high latitude region .[[BR]] '''Status :''' Development has been done for LIM2-VP and LIM2_EVP and is being validated. It has been also done on LIM3 but LIM3 failed on the coarser grif[[BR]] '''Main tasks :'''    [[BR]] implementation under svn '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]] '''Priority:'''medium[[BR]]  '''Depends on:''' LIM3 status [[BR]] '''Principal Investigator : ''' Rachid Benshila (rachid.benshila@locean-ipsl.upmc.fr)   [[BR]] 
    7474 
    75 === '''LOCEAN .11 Fox-Kemper parametrization''' === 
     75=== '''LOCEAN .11 —Fox-Kemper parametrization''' === 
    7676  '''Motivation: ''' Give a better representation of sub mesoscale[[BR]] '''Status :''' partially coded[[BR]] '''Main tasks :'''    [[BR]] end of coding and test[[BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]] '''Priority:'''[[BR]] '''Depends on:''' LIM3 status [[BR]] '''Principal Investigator : ''' Gurvan Madec (gurvan.madec@locean-ipsl.upmc.fr)   [[BR]] 
    7777 
    78 === '''LOCEAN .12 Suppress Lobster''' === 
    79   '''Motivation: '''Handle less geochemichal models for code management.[[BR]] '''Status :''' Don't panic, LOBSTER will remain there, but included into PISCES[[BR]] '''Main tasks :'''    [[BR]] (1) add LOBSTER SMS within PISCES [[BR]] (2) Suppress LoBSTER directory[[BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]] '''Priority:''' low[[BR]]   '''Depends on:'''  [[BR]] '''Principal Investigator : ''' Christian Ethé (cetlod@ipsl.jussieu.fr)   [[BR]] 
     78=== '''LOCEAN .12 —Suppress Lobster''' === 
     79  '''Motivation: '''Handle less geochemichal models for code management.[[BR]] '''Status :''' Don't panic, LOBSTER will remain there, but included into PISCES[[BR]] '''Main tasks :'''    [[BR]] (1) add LOBSTER SMS within PISCES [[BR]] (2) Suppress LoBSTER directory[[BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]] '''Priority:''' low[[BR]]   '''Depends on:'''  [[BR]] '''Principal Investigator : ''' Christian Ethé (cetlod@ipsl.jussieu.fr)   [[BR]] 
    8080 
    81 === '''LOCEAN .13 Non-linear free surface by default''' === 
     81=== '''LOCEAN .13 —Non-linear free surface by default''' === 
    8282  '''Motivation: '''Fit the state of the art and prepare the suppression of the linear option in the following years.[[BR]] '''Status :'''Linear free surface is currently the default option [[BR]] '''Main tasks :'''    [[BR]] suppress key_vvl and associated logical, create one for linear free surface [[BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]] '''Priority:'''low[[BR]] '''Depends on:''' LOCEAN.3 [[BR]] '''Principal Investigator : ''' Simona Flavonir simona.flavoni@locean-ipsl.upmc.fr)   [[BR]] 
    8383 
    84 === '''LOCEAN .14 Coupling with a toy atmospheric model''' === 
     84=== '''LOCEAN .14 —Coupling with a toy atmospheric model''' === 
    8585  '''Motivation: '''introduce a toy model to test coupling interface and perf with oasis3 and 4.[[BR]] '''Status :''' toy models exists at cerfacs...[[BR]] '''Main tasks :''' write / test / implement  [[BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]]  '''Priority:'''[[BR]]  '''Depends on:'''[[BR]] '''Principal Investigator : ''' Sebastien Masson (smasson@locean-ipsl.upmc.fr)   [[BR]] 
    8686 
    87 === '''LOCEAN .15 Improve TOP interface''' === 
    88   '''Motivation: '''be able to couple easily OPA dynamic with a wide range of ecosystem model.[[BR]] '''Status :''' improve the existing interface, evaluate was was done locally for coupling with Hadoc, ERSEM ...  [[BR]] '''Main tasks :''' write/ implement  [[BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]]  '''Priority:'''[[BR]]  '''Depends on:'''[[BR]] '''Principal Investigator : ''' Christian Ethé (christian.ethé@ipsl.jussieu.fr.fr)   [[BR]] 
     87=== '''LOCEAN .15 —Improve TOP interface''' === 
     88  '''Motivation: '''be able to couple easily OPA dynamic with a wide range of ecosystem model.[[BR]] '''Status :''' improve the existing interface, evaluate was was done locally for coupling with Hadoc, ERSEM ...  [[BR]] '''Main tasks :''' write/ implement  [[BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]]  '''Priority:'''[[BR]]  '''Depends on:'''[[BR]] '''Principal Investigator : ''' Christian Ethé (Christian.Ethe@ipsl.jussieu.fr.fr)   [[BR]] 
    8989 
    90 === '''LOCEAN -16 ORCA2-LIM based on NEMO (continuation))''' === 
     90=== '''LOCEAN -16 —ORCA2-LIM based on NEMO (continuation))''' === 
    9191  '''Motivation: '''Provide to all groups using NEMO in coupled O/I/A simulations a reference set of forced experiments that document the effect of various physical package as well as the changes from the OPA8 to NEMO with respect to the ocean and ice components (and possibly PISCES). This is part of the IsENES EU project. [[BR]] '''Status :'''ORCA2-LIM2 configuration (bathy, physics) has been updated, and Standard output for IPCC runs using IOM(v3.2). An environment has been developed to run long forced and coupled experiments together with the creation of standard control plots. Simulations have been performed (reference CORE2 normal year and interannual simulations )[[BR]] '''Main tasks :'''    [[BR]] (1) ORCA2-LIM3 configuration, coll. with UCL[[BR]] (2) Web and paper documentations of the behaviour found[[BR]] (3) Possibly reference experiment with other resolution[[BR]] (4) Possibly reference experiment with ORCA2-LIM-PISCES [BR]] '''Science Reviewer:''' [[BR]] '''System Reviewer:''' [[BR]] '''Deadline:''' [[BR]] '''Priority:'''[[BR]] '''Principal Investigator : '''Gurvan Madec (gm@locean-ipsl.upmc.fr), Dorotea Iovino (dorotea.iovino@locean-ipsl.upmc.fr)    [[BR]] 
    9292 
    93 === '''LOCEAN-17 Configuration manager''' === 
     93=== '''LOCEAN-17 — Configuration manager''' === 
    9494  '''Motivation:''' Create the configuration tools (CFG-tools): user-friendly interface, the tools, and the documentation associated to the creation of a new model configuration, and especially configurations defined as a zoom of an ORCA configuration. The tools include the generation of a grid, a bathymetry, an initial state, a forcing data set, and open boundary conditions.   '''Status :''' Start in August 2009, within My_Ocean (Brice Lemaire position). Work done in collaboration with IFREMER. [[BR]] '''main tasks :''' (50wk) [[BR]] (1) revisit the grid generation of the AGRIF tools (6 wk) (v3.3) [[BR]] (2) create a automatic OBC data generation (20 wk) (v3.4) [[BR]] (3) Hand changes of the bathymetry through the Java interface developed at IFREMER (16 wk) (v3.4) [[BR]] (4) First full version of the configuration manager (8 wk) (v3.5) [[BR]] '''Science Reviewer:''' [[BR]]  '''System Reviewer:''' [[BR]]  '''Deadline:''' [[BR]] '''Priority:'''[[BR]] '''Principal Investigator :''' Rachid Benshila (rachid.benshila@locean-ipsl.upmc.fr)[[BR]] 
    9595 
    96 === '''LOCEAN-18 Development of TAM (continuation)''' === 
     96=== '''LOCEAN-18 — Development of TAM (continuation)''' === 
    9797  '''Motivation:''' development of the Tangent and Adjoint Model (TAM) of NEMO.[[BR]] '''Status :''' Grenoble action (LJK, LEGI, ANR VODA), a 3 year project started in 2008, and well engaged: (1) first release of tangent linear and adjoint model phased with '''nemo_v3''' ocean dynamics, which includes ORCA2_Z31, GYRE_Z31, POMME025 configurations, MPP capabilities and documentation; (2) validation tools available (adjoint test, tangent linear hypothesis); (3) coding phase achieved for TAM phased with '''nemo_v3.2 & nemo_v3.2.1''' (6 wks). [[BR]] '''main tasks :'''  [[BR]] (1) include Grenoble validation tools in the NVTK settings: NVTK workshop required.  [[BR]] (2) create tutorial, test cases and reference experiment for Adjoint (4 wks - '''nemo_v3''').  [[BR]] (3) organise the review cycles for nemotam.  [[BR]] (4) validation of 3.2 to be completed.  [[BR]] ''Planning'' 
    9898  ||Tasks||Version||Description||Target||Priority||