Version 5 (modified by smasson, 4 years ago) (diff) |
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Get the code
# my login me=smasson # svn path to NEMO trunk svnpath=svn+ssh://${me}@forge.ipsl.jussieu.fr/ipsl/forge/projets/nemo/svn/NEMO/trunk # get the revision number of the HEAD rev=$( svn info $svnpath | grep "Last Changed Rev" | sed -e "s/.*: *//" ) # directory name given to the local trunk dirnemo=trunk_test_perf_${rev} # checkout the trunk into $dirnemo svn co $svnpath svn+ssh://smasson@forge.ipsl.jussieu.fr/ipsl/forge/projets/nemo/svn/NEMO/trunk $dirnemo # cd $dirnemo #
Change namelist_*ref
# change cfgs/SHARED/namelist_ref (no IO without XIOS, remove run.stat, meshmask, add timing) sed -e "s/nn_stock *=.*/nn_stock = -1 /" \ -e "s/nn_write *=.*/nn_write = -1 /" \ -e "s/runstat *=.*/runstat = .false. /" \ -e "s/ln_meshmask *=.*/ln_meshmask = .false. /" \ -e "s/ln_timing *=.*/ln_timing = .true. /" \ cfgs/SHARED/namelist_ref > tmp$$ mv tmp$$ cfgs/SHARED/namelist_ref # change cfgs/SHARED/namelist_ice_ref (add an init file) sed -e "s/nn_iceini_file *=.*/nn_iceini_file = 1 /" \ cfgs/SHARED/namelist_ice_ref > tmp$$ mv tmp$$ cfgs/SHARED/namelist_ice_ref # change cfgs/SHARED/namelist_pisces_ref (as in sette) sed -e "s/ln_varpar *=.*/ln_varpar = .false. /" \ -e "s/ln_pisdmp *=.*/ln_pisdmp = .false. /" \ cfgs/SHARED/namelist_pisces_ref > tmp$$ mv tmp$$ cfgs/SHARED/namelist_pisces_ref
Change ORCA2_ICE_PISCES namelist_*cfg and file_def_nemo-*.xml
# change namelist_cfg (suppress icebergs!!) ff=cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_cfg sed -e "s/ln_icebergs *=.*/ln_icebergs = .false. /" $ff > tmp$$ mv tmp$$ $ff # change namelist_top_cfg (as in sette) ff=cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_top_cfg sed -e "s/ln_trcdta *=.*/ln_trcdta = .false. /" $ff > tmp$$ mv tmp$$ $ff # change namelist_pisces_cfg (as in sette) ff=cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_pisces_cfg sed -e "s/ln_ironsed *=.*/ln_ironsed = .false. /" \ -e "s/ln_ironice *=.*/ln_ironice = .false. /" \ -e "s/ln_hydrofe *=.*/ln_hydrofe = .false. /" \ $ff > tmp$$ mv tmp$$ $ff # change file_def_nemo-oce.xml (suppress diag) ff=cfgs/ORCA2_ICE_PISCES/EXPREF/file_def_nemo-oce.xml sed -e '/file_group id="1m"/,/<\/file_group>/d' $ff > tmp$$ mv tmp$$ $ff # change file_def_nemo-ice.xml (suppress diag) ff=cfgs/ORCA2_ICE_PISCES/EXPREF/file_def_nemo-ice.xml sed -e '/name_suffix="_SBC_scalar"/,/<\/file>/d' $ff > tmp$$ mv tmp$$ $ff # change file_def_nemo-pisces.xml (suppress diag) ff=cfgs/ORCA2_ICE_PISCES/EXPREF/file_def_nemo-pisces.xml sed -e '/file_group id="1y"/,/<\/file_group>/d' $ff > tmp$$ mv tmp$$ $ff
Compile the configurations code
I propose to start with
- ORCA2, ORCA2_ICE, ORCA2_ICE_PISCES.
- one run with XIOS attached (XIOSAT) and one run without XIOS (NOXIOS)
There is the modules smasson uses on jean-zay modules_jeanzay.sh and irene modules_irene.sh
machine=... # for example X64_IRENE, X64_JEANZAY # ORCA2_ICE_PISCES ./makenemo -m $machine -n ORCA2_ICE_PISCES_XIOSAT -r ORCA2_ICE_PISCES -j 8 ./makenemo -m $machine -n ORCA2_ICE_PISCES_NOXIOS -r ORCA2_ICE_PISCES -j 8 del_key "key_iomput" # ORCA2_ICE ./makenemo -m $machine -n ORCA2_ICE_XIOSAT -r ORCA2_ICE_PISCES -j 8 del_key "key_top" ./makenemo -m $machine -n ORCA2_ICE_NOXIOS -r ORCA2_ICE_PISCES -j 8 del_key "key_top key_iomput" # ORCA2 ./makenemo -m $machine -n ORCA2_XIOSAT -r ORCA2_ICE_PISCES -j 8 del_key "key_top key_si3" ./makenemo -m $machine -n ORCA2_NOXIOS -r ORCA2_ICE_PISCES -j 8 del_key "key_top key_si3 key_iomput"
Cleaning of 2 context_nemo.xml files
ff=cfgs/ORCA2_ICE_XIOSAT/EXP00/context_nemo.xml sed -e '/pisces/d' $ff > tmp$$ mv tmp$$ $ff ff=cfgs/ORCA2_XIOSAT/EXP00/context_nemo.xml sed -e '/_pisces/d' -e '/_ice/d' $ff > tmp$$ mv tmp$$ $ff
link the input files files
ORCA2_ICE_v4.x.gz is available
- on Clément cloud: here
- on Jean-Zay : /gpfsstore/rech/fqx/reee217/input_nemo_v4.0
- on Irene : /ccc/store/cont005/ra0542/massons/input_nemo_v4.0
Ice_initialization.nc is available
- on Seb cloud: https://owncloud.locean-ipsl.upmc.fr/index.php/s/OV9nRKCmCnIleHU here]
- on Jean-Zay : /gpfsstore/rech/fqx/reee217/input_nemo_v4.0
- on Irene : /ccc/store/cont005/ra0542/massons/input_nemo_v4.0
I
# define path to ORCA2_ICE_v4.x directory. For example: #dirdata=/ccc/scratch/cont005/ra0542/massons/input_nemo_v4.0/ORCA2_ICE_v4.x #dirdata=/gpfsscratch/rech/fqx/reee217/input_nemo_v4.0/ORCA2_ICE_v4.x dirdata=... # add the new Ice_initialization file to this directory mv Ice_initialization.nc $dirdata # link the input files for dd in cfgs/ORCA2_*/EXP00 do cd $dd ln -sf $dirdata/* . cd - done
Run!
see the 2 examples of jobs: jobaps_irene.sh or jobaps_jeanzay.sh
for dd in cfgs/ORCA2_*/EXP00 do cp jobaps.sh $dd/. # get jobaps.sh from the attached files cd $dd qs jobaps.sh # define as alias is not already done... cd - done
Check the runs did 5840 time steps
for ff in cfgs/ORCA2_*/EXP00/time.step do echo "$ff: $( cat $ff)" done
Create aps reports
for dd in cfgs/ORCA2_*/EXP00 do cd $dd yyyymmdd=$( date +%Y%m%d ) hhmmss=$( date +%H%M%S ) rptname=aps_result_${yyyymmdd}_${hhmmss}.txt module list > $rptname # add the list of modules in the report echo >> $rptname aps-report aps_result_${yyyymmdd} >> $rptname cd - done
Attachments (4)
- jobaps_irene.sh (418 bytes) - added by smasson 4 years ago.
- jobaps_jeanzay.sh (514 bytes) - added by smasson 4 years ago.
- modules_irene.sh (419 bytes) - added by smasson 4 years ago.
- modules_jeanzay.sh (407 bytes) - added by smasson 4 years ago.
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