| 1 | | |
| 2 | | == Get the code == |
| 3 | | |
| 4 | | {{{#!sh |
| 5 | | # my login |
| 6 | | me=smasson |
| 7 | | # svn path to NEMO trunk |
| 8 | | svnpath=svn+ssh://${me}@forge.ipsl.jussieu.fr/ipsl/forge/projets/nemo/svn/NEMO/trunk |
| 9 | | # get the revision number of the HEAD |
| 10 | | rev=$( svn info $svnpath | grep "Last Changed Rev" | sed -e "s/.*: *//" ) |
| 11 | | # directory name given to the local trunk |
| 12 | | dirnemo=trunk_test_perf_${rev} |
| 13 | | # checkout the trunk into $dirnemo |
| 14 | | svn co $svnpath |
| 15 | | svn+ssh://smasson@forge.ipsl.jussieu.fr/ipsl/forge/projets/nemo/svn/NEMO/trunk $dirnemo |
| 16 | | # |
| 17 | | cd $dirnemo |
| 18 | | # |
| 19 | | }}} |
| 20 | | |
| 21 | | == Change namelist_*ref == |
| 22 | | |
| 23 | | {{{#!sh |
| 24 | | # change cfgs/SHARED/namelist_ref (no IO without XIOS, remove run.stat, meshmask, add timing) |
| 25 | | sed -e "s/nn_stock *=.*/nn_stock = -1 /" \ |
| 26 | | -e "s/nn_write *=.*/nn_write = -1 /" \ |
| 27 | | -e "s/runstat *=.*/runstat = .false. /" \ |
| 28 | | -e "s/ln_meshmask *=.*/ln_meshmask = .false. /" \ |
| 29 | | -e "s/ln_timing *=.*/ln_timing = .true. /" \ |
| 30 | | cfgs/SHARED/namelist_ref > tmp$$ |
| 31 | | mv tmp$$ cfgs/SHARED/namelist_ref |
| 32 | | |
| 33 | | # change cfgs/SHARED/namelist_ice_ref (add an init file) |
| 34 | | sed -e "s/nn_iceini_file *=.*/nn_iceini_file = 1 /" \ |
| 35 | | cfgs/SHARED/namelist_ice_ref > tmp$$ |
| 36 | | mv tmp$$ cfgs/SHARED/namelist_ice_ref |
| 37 | | |
| 38 | | # change cfgs/SHARED/namelist_pisces_ref (as in sette) |
| 39 | | sed -e "s/ln_varpar *=.*/ln_varpar = .false. /" \ |
| 40 | | -e "s/ln_pisdmp *=.*/ln_pisdmp = .false. /" \ |
| 41 | | cfgs/SHARED/namelist_pisces_ref > tmp$$ |
| 42 | | mv tmp$$ cfgs/SHARED/namelist_pisces_ref |
| 43 | | }}} |
| 44 | | |
| 45 | | == Change ORCA2_ICE_PISCES namelist_*cfg and file_def_nemo-*.xml == |
| 46 | | |
| 47 | | {{{#!sh |
| 48 | | # change namelist_cfg (suppress icebergs!!) |
| 49 | | ff=cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_cfg |
| 50 | | sed -e "s/ln_icebergs *=.*/ln_icebergs = .false. /" $ff > tmp$$ |
| 51 | | mv tmp$$ $ff |
| 52 | | |
| 53 | | # change namelist_top_cfg (as in sette) |
| 54 | | ff=cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_top_cfg |
| 55 | | sed -e "s/ln_trcdta *=.*/ln_trcdta = .false. /" $ff > tmp$$ |
| 56 | | mv tmp$$ $ff |
| 57 | | |
| 58 | | # change namelist_pisces_cfg (as in sette) |
| 59 | | ff=cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_pisces_cfg |
| 60 | | sed -e "s/ln_ironsed *=.*/ln_ironsed = .false. /" \ |
| 61 | | -e "s/ln_ironice *=.*/ln_ironice = .false. /" \ |
| 62 | | -e "s/ln_hydrofe *=.*/ln_hydrofe = .false. /" \ |
| 63 | | $ff > tmp$$ |
| 64 | | mv tmp$$ $ff |
| 65 | | |
| 66 | | # change file_def_nemo-oce.xml (suppress diag) |
| 67 | | ff=cfgs/ORCA2_ICE_PISCES/EXPREF/file_def_nemo-oce.xml |
| 68 | | sed -e '/file_group id="1m"/,/<\/file_group>/d' $ff > tmp$$ |
| 69 | | mv tmp$$ $ff |
| 70 | | |
| 71 | | # change file_def_nemo-ice.xml (suppress diag) |
| 72 | | ff=cfgs/ORCA2_ICE_PISCES/EXPREF/file_def_nemo-ice.xml |
| 73 | | sed -e '/name_suffix="_SBC_scalar"/,/<\/file>/d' $ff > tmp$$ |
| 74 | | mv tmp$$ $ff |
| 75 | | |
| 76 | | # change file_def_nemo-pisces.xml (suppress diag) |
| 77 | | ff=cfgs/ORCA2_ICE_PISCES/EXPREF/file_def_nemo-pisces.xml |
| 78 | | sed -e '/file_group id="1y"/,/<\/file_group>/d' $ff > tmp$$ |
| 79 | | mv tmp$$ $ff |
| 80 | | }}} |
| 81 | | |
| 82 | | == Compile the configurations code == |
| 83 | | |
| 84 | | I propose to start with ORCA2, ORCA2_ICE, ORCA2_ICE_PISCES. [[BR]] |
| 85 | | In each case, we do one run with XIOS attached (XIOSAT) an one run without XIOS (NOXIOS) |
| 86 | | |
| 87 | | {{{#!sh |
| 88 | | machine=... # for example X64_IRENE, X64_JEANZAY |
| 89 | | # ORCA2_ICE_PISCES |
| 90 | | ./makenemo -m $machine -n ORCA2_ICE_PISCES_XIOSAT -r ORCA2_ICE_PISCES -j 8 |
| 91 | | ./makenemo -m $machine -n ORCA2_ICE_PISCES_NOXIOS -r ORCA2_ICE_PISCES -j 8 del_key "key_iomput" |
| 92 | | # ORCA2_ICE |
| 93 | | ./makenemo -m $machine -n ORCA2_ICE_XIOSAT -r ORCA2_ICE_PISCES -j 8 del_key "key_top" |
| 94 | | ./makenemo -m $machine -n ORCA2_ICE_NOXIOS -r ORCA2_ICE_PISCES -j 8 del_key "key_top key_iomput" |
| 95 | | # ORCA2 |
| 96 | | ./makenemo -m $machine -n ORCA2_XIOSAT -r ORCA2_ICE_PISCES -j 8 del_key "key_top key_si3" |
| 97 | | ./makenemo -m $machine -n ORCA2_NOXIOS -r ORCA2_ICE_PISCES -j 8 del_key "key_top key_si3 key_iomput" |
| 98 | | }}} |
| 99 | | |
| 100 | | == Cleaning of 2 context_nemo.xml files == |
| 101 | | |
| 102 | | {{{#!sh |
| 103 | | ff=cfgs/ORCA2_ICE_XIOSAT/EXP00/context_nemo.xml |
| 104 | | sed -e '/pisces/d' $ff > tmp$$ |
| 105 | | mv tmp$$ $ff |
| 106 | | |
| 107 | | ff=cfgs/ORCA2_XIOSAT/EXP00/context_nemo.xml |
| 108 | | sed -e '/_pisces/d' -e '/_ice/d' $ff > tmp$$ |
| 109 | | mv tmp$$ $ff |
| 110 | | }}} |
| 111 | | |
| 112 | | == link the input files files == |
| 113 | | |
| 114 | | {{{#!sh |
| 115 | | # define path to ORCA2_ICE_v4.x directory. For example: |
| 116 | | #dirdata=/ccc/scratch/cont005/ra0542/massons/input_nemo_v4.0/ORCA2_ICE_v4.x |
| 117 | | #dirdata=/gpfsscratch/rech/fqx/reee217/input_nemo_v4.0/ORCA2_ICE_v4.x |
| 118 | | dirdata=... |
| 119 | | |
| 120 | | # add the new Ice_initialization file to this directory |
| 121 | | mv Ice_initialization.nc $dirdata |
| 122 | | |
| 123 | | # link the input files |
| 124 | | for dd in cfgs/ORCA2_*/EXP00 |
| 125 | | do |
| 126 | | cd $dd |
| 127 | | ln -sf $dirdata/* . |
| 128 | | cd - |
| 129 | | done |
| 130 | | }}} |
| 131 | | |
| 132 | | == Run! == |
| 133 | | |
| 134 | | {{{#!sh |
| 135 | | for dd in cfgs/ORCA2_*/EXP00 |
| 136 | | do |
| 137 | | cp jobaps.sh $dd/. # get jobaps.sh from the attached files |
| 138 | | cd $dd |
| 139 | | qs jobaps.sh # define as alias is not already done... |
| 140 | | cd - |
| 141 | | done |
| 142 | | }}} |
| 143 | | |
| 144 | | == Check the runs did 5840 time steps == |
| 145 | | |
| 146 | | {{{#!sh |
| 147 | | for ff in cfgs/ORCA2_*/EXP00/time.step |
| 148 | | do |
| 149 | | echo "$ff: $( cat $ff)" |
| 150 | | done |
| 151 | | }}} |
| 152 | | |
| 153 | | == Create aps reports == |
| 154 | | |
| 155 | | {{{#!sh |
| 156 | | for dd in cfgs/ORCA2_*/EXP00 |
| 157 | | do |
| 158 | | cd $dd |
| 159 | | aps-report aps_result_$( date +%Y%m%d ) |
| 160 | | cd - |
| 161 | | done |
| 162 | | }}} |
| 163 | | |
| 164 | | |
| 165 | | |
| 166 | | |
| | 1 | * [./do_trunk_perfs How to do the tests] |
