Changes between Version 36 and Version 37 of WorkingGroups/TOP/TOP-UserQuickGuide

Timestamp:

2018-03-14T00:31:13+01:00 (7 years ago)

Author:

lovato

Comment:

--

WorkingGroups/TOP/TOP-UserQuickGuide

@@ -300 +300 @@
 Beside the 6 core files of MY_TRC module, let’s assume an external BGC model named “MYBGC” and constituted by a rather essential coding structure, likely few Fortran files. The new coupled configuration name is NEMO_MYBGC.
 
-The best solution is to have all files (the modified MY_TRC routines and the BGC model ones) placed in a unique folder and to use the makenemo external readdressing of MY_SRC folder.
+The best solution is to have all files (the modified MY_TRC routines and the BGC model ones) placed in a unique folder with root <MYBGCPATH> and to use the makenemo external readdressing of MY_SRC folder.
 
 The coupled configuration listed in '''cfg.txt''' will look like
@@ -323 +323 @@
 The compilation of more articulated BGC model code & infrastructure, like in the case of BFM ([http://www.bfm-community.eu/publications/bfmnemomanual_r1.0_201508.pdf BFM-NEMO coupling manual]), requires some additional features.
 
-As before, let’s assume a coupled configuration name NEMO_MYBGC, but in this case MYBGC model repository has 3 different subfolders for biogeochemistry, named initialization, pelagic, and benthic, and a separate one named nemo_coupling that contains the modified MY_SRC routines.
+As before, let’s assume a coupled configuration name NEMO_MYBGC, but in this case MYBGC model root becomes <MYBGCPATH> that contains 4 different subfolders for biogeochemistry, named initialization, pelagic, and benthic, and a separate one named nemo_coupling including the modified MY_SRC routines.
 The latter folder containing the modified NEMO coupling interface will be still linked using the makenemo “-e” option.
 
@@ -329 +329 @@
 {{{
 bld::tool::fppkeys  key_zdftke key_dynspg_ts key_iomput key_mpp_mpi key_top
+
 src::MYBGC::initialization         <MYBGCPATH>/initialization
 src::MYBGC::pelagic                <MYBGCPATH>/pelagic
@@ -343 +344 @@
 The compilation will be performed as in the previous case with the following
 {{{
-makenemo -n NEMO_MYBGC -m <arch_my_machine> -j 8 -e <MYBGCPATH>
+makenemo -n NEMO_MYBGC -m <arch_my_machine> -j 8 -e <MYBGCPATH>/nemo_coupling
 }}}