Ticket #225: run.def.contfrac

DO_FLOODPLAINS =  y
DO_FLOODINFILT =  TRUE
DO_SWAMPS =  TRUE

#PRINTLEV = 4

LIMIT_WEST =-82.0
LIMIT_EAST = -40.0 
LIMIT_SOUTH= -10.0 
LIMIT_NORTH= 10.0 

# SECHIBA history output level (0..10)
# default = 5
SECHIBA_HISTLEVEL = 10

# STOMATE history output level (0..10)
# default = 10
STOMATE_HISTLEVEL = 10

#
#**************************************************************************
#                    Parameter file list for ORCHIDEE
# See all optional parameters in modipsl/modeles/ORCHIDEE/orchidee.default
#**************************************************************************
# Time
TIME_LENGTH= 1D
TIME_SKIP= 0D

# Input and output
#**************************************************************************
# If DRIVER_reset_time=y, read the year from forcing file instead of taking it from restart file 
DRIVER_reset_time= y

# Name of restart to read for initial conditions for the driver
RESTART_FILEIN= NONE

# Name of restart to read for initial conditions
# default = NONE
SECHIBA_restart_in= NONE

# Name of restart to read for initial conditions of STOMATE
# default = NONE
STOMATE_RESTART_FILEIN= NONE

# Use XIOS for writing diagnostics file
# defulat = n
XIOS_ORCHIDEE_OK= n

# Flag to activate sechiba_out_2.nc history file for SECHIBA
# default  = FALSE
SECHIBA_HISTFILE2 = FALSE

# SECHIBA history 2 output level (0..10)
# default = 1
SECHIBA_HISTLEVEL2 = 1

# Writefrequency in seconds in sechiba_history.nc
# default = 86400.0
WRITE_STEP= -1.

# Writefrequency in seconds sechiba_out_2.nc 
# default = 1800.0
WRITE_STEP2 = 10800.0

# Writefrequency in days in stomate_history.nc
# default = 10.
STOMATE_HIST_DT= -1.

# Writefrequency in days or -1 for monthly output in stomate_ipcc_history.nc
# default = 0.
STOMATE_IPCC_HIST_DT= -1.


# Hydrology parameters
#**************************************************************************
# Activate the multi-layer diffusion scheme adapted from CWRR
# by default the Choisnel hydrology is used.
HYDROL_CWRR= y

# Activate river routing
RIVER_ROUTING= y


#**************************************************************************
# Activate Stomate component
STOMATE_OK_STOMATE= y

# Activate calculations of CO2 according to Farqhuar and Ball
STOMATE_OK_CO2= y

# Parmeters related to vegetation map
#**************************************************************************
# Update vegetation frequency
# default = 1Y
VEGET_UPDATE= 1Y

# Read lai map
LAI_MAP= n

# Prescribed vegetation, default=n
IMPOSE_VEG= n

# Other parameters
#**************************************************************************
# Analytic spinup
SPINUP_ANALYTIC= n
SPINUP_PERIOD= -1

# Value for atmospheric CO2, default=350.
ATM_CO2= 325.57

# Activate reading/writing of cforcing file. Default=NONE
STOMATE_CFORCING_NAME= NONE

############################# General flags to activate the modules  #############################

# Activate the DGVM? (FALSE by default)
STOMATE_OK_DGVM = n 

# Activate grassland management? (FALSE by default)
ENABLE_GRAZING = n

# Activate Spitfire? (FALSE by default ?)
FIRE_DISABLE = n
ALLOW_DEFOREST_FIRE = n

# Activate the soil freezing scheme? (FALSE by default)
OK_FREEZE = y

# Activate permafrost carbon? (FALSE by default)
OK_PC = y

# Activate the explicit snow scheme developed by Tao? (FALSE by default)
OK_EXPLICITSNOW = y

# Activate computation of flux densities of CH4 from wetlands? (FALSE by default)
CH4_CALCUL = y

# Activate Topmodel? (FALSE by default)
TOPM_CALCUL = n

# Activate CO2 downregulation? (FALSE by default ?)
DOWNREGULATION_CO2 = n

##################################################################################

################################# ISABELLE #######################################

OK_WETDIAGLONG=y

## No need because in constantes_soil IF (ok_freeze) THEN these flags = .TRUE.
#OK_ECORR=y    # Energy correction for freezing
#OK_SNOWFACT=y # Activates the smoothering of landscapes by snow

## Not found in the code
#OK_SNOW_TUNDRA_TAIGA=n
#OK_GEL_THD=y
#OK_GEL_THERMOSOIL=n
#ALB_HIGH_LAT=y
#OK_QGROUND=y
#OK_THERMIX_trunc=y
#OK_SHUM_PERMA_LONG=y
#OK_SHUMDIAG_PERMA=y
#OK_SHUMDIAG_INTERPOL=y
#OK_GEL_THD=n
#OK_GEL_THERMOSOIL=y
#FORCING_RAD_CENTER=y # CO2 down regulation

##This is for permafrost

## Not found in the code
#USE_PERMAFROST=y
#WH_MG=n
#use_ice_latentheat=y
#use_excess_ice=n
#reset_excess_ice=n
#excess_ice_amount=0.0
#temp_offset=
#temp_trend=
#temp_trend_tzero=
#temp_trend_tplateau=
#sedimentation_rate=0.

THERMOSOIL_NBLEV=32
O2_LIMIT=n
frozen_respiration_func=4
OK_ZIMOV=n
OK_METHANE=n
TAU_CH4_TROPH=432000.
HEAT_CO2_ACT=40.0E6
HEAT_CO2_SLO=30.0E6
HEAT_CO2_PAS=10.0E6
HEAT_CH4_GEN=0.
HEAT_CH4_TROPH=0.
TAU_CH4_GEN_RATIO=9.0
O2_SEUIL_MGEN=3.0
hmin_tcalc=.01
sn_dens=330.
sn_cond=0.2
READ_PERMAFROST_MAP=n # waiting for reply in order to find input file
# PERMAFROST_MAP_FILE=
organic_layer_thickness=0.0
satsoil=n
cryoturbate=y
cryoturbation_diff_k=.01
use_toporganiclayer_tempdiff=n
use_soilc_tempdiff=y
use_new_cryoturbation=y
cryoturbation_method=4

## Setting yedoma carbon
reset_yedoma_carbon=n
yedoma_map_filename=yedoma_map.nc
yedoma_depth=20.
deepC_a_init=1790.1
deepC_s_init=14360.8
deepC_p_init=1436.0

## WETLAND CH4 methane
CH4atmo_CONC=0.0033

## TOPMODEL
TOPMODEL_PARAMETERS_FILE=TOPMODEL_param_1deg.nc

#ok_histsync=TRUE

############################################ Grassland management ######################################################

### define if enable grassland management and strategy of management
### define PFTs that are managed, grazed or cut

## Define animal status parameters
FILE_PARAM_INIT=laq-int.init_cond.par

## Define management
F_MANAGEMENT_MAP=0
F_GRAZING_MAP=0
F_DEPOSITION_MAP=0
N_limitation=n
NB_YEAR_MANAGEMENT=0 1 1 1 1 1 1 1 1 1 1 1 1
FILE_MANAGEMENT=/home/orchidee03/jchang/run_MICT_GM/noman /home/orchidee03/jchang/run_MICT_GM/noman /home/orchidee03/jchang/run_MICT_GM/noman /home/orchidee03/jchang/run_MICT_GM/noman /home/orchidee03/jchang/run_MICT_GM/noman /home/orchidee03/jchang/run_MICT_GM/noman /home/orchidee03/jchang/run_MICT_GM/noman /home/orchidee03/jchang/run_MICT_GM/noman /home/orchidee03/jchang/run_MICT_GM/noman /home/orchidee03/jchang/run_MICT_GM/noman /home/orchidee03/jchang/run_MICT_GM/noman /home/orchidee03/jchang/run_MICT_GM/noman /home/orchidee03/jchang/run_MICT_GM/noman
MANAGEMENT_MAP=2D_fert_1860_2010_ME_fracsystem.nc
MANAGEMENT_START=0 0 130 130 0 130 130
MANAGEMENT_INTENSITY=0 0 4 4 0 4 4
#GRAZING_MAP=2D_sr_ugb_1860_2010_ME_fracsystem.nc
GRAZING_MAP=sr_ugb.nc
DEPOSITION_MAP=2D_Ndep_INCA_1860_2010.nc
DEPOSITION_START=0 0 130 130 0 130 130
N_EFFECT=0.6
NB_CUT_YEAR=10
#NVM=13

IS_GRASSLAND_CUT__10=n
IS_GRASSLAND_CUT__11=n
##LAI_MAX__10=7 # define parameters for managed grassland
##LAI_MAX__11=7 # define parameters for managed grassland

#MERID_RES=0.5
#ZONAL_RES=0.5

LPJ_GAP_CONST_MORT=n 
HARVEST_AGRI=n 
STOMATE_IPCC_OUTPUT_FILE=NONE 
F_AUTOGESTION=5 
F_POSTAUTO=0 
IS_GRASSLAND_MANAG__10=y 
IS_GRASSLAND_MANAG__11=y 
IS_GRASSLAND_GRAZED__10=y 
IS_GRASSLAND_GRAZED__11=y 
SLA_MAX__10=3.0E-2 
SLA_MIN__10=2.4E-2 
SLA_MAX__11=3.0E-2 
SLA_MIN__11=2.4E-2 
NO_PFROST_DECOMP=n 

#################################### SPITFIRE configurations #############################################

# Read population density?
READ_POPDENS=y 
POPDENS_FILE=popdens_1850_HYDE.nc 

# Read human ignition parameter?
READ_HUMIGN=y
HUMIGN_FILE=humign.nc

# Read the ratio flag?
READ_RATIO_FLAG=y

# When the flag is greater than 1, BA and CF are forced, otherwise they are prognositcally determined
RATIO_FLAG_FILE=flag_minus_ones.nc

# Read the ratio? default y
READ_RATIO=y

# Default ratio file with all ratios as 1, i.e., the BA is prognostically determined
RATIO_FILE=ratio_ones.nc

READ_CF_COARSE=n #default n
CF_COARSE_FILE=CF_coarse.nc
READ_CF_FINE=n #default n
CF_FINE_FILE=CF_fine.nc

# Lightning flashes input file
LIGHTNING_FILE=LISOTD_HRMC_V2.3.2011.lightn.nc
DEPTH_MAX_T=11