||'''[wiki:Documentation Documentation]'''||[wiki:trunk Main Version]||[wiki:Tags Tag Versions]||[wiki:Branches Other Versions]||[wiki:Scripts Scripts]||[wiki:Forcings Forcings]||[wiki:Simulations Simulations]||[wiki:Evaluation Evaluation]||[wiki:Tools Tools]||[wiki:HowTo How to]||[wiki:Meetings Meetings]||[wiki:Seminars Seminars]||[wiki:UserList UserList]||[wiki:Contact Contact]|| = Documentation = You will find here information on the code itself, dealing with either scientific or technical aspects. More information on how to use the model can be find on the [wiki:Scripts] page and [wiki:HowTo]. == Scientific documentation == '''Embedded documentation'''[[BR]] ORCHIDEE has a scientific documentation embedded into the code that generates html and pdf versions. See [wiki:Documentation/ORCHIDEE_DOC ORCHIDEE_DOC] page for knowing more. Below are listed the documentation of some versions of ORCHIDEE : * trunk ORCHIDEE, revision 1240: [http://dods.ipsl.jussieu.fr/orchidee/DOXYGEN/documentation_1240.pdf the pdf document], [http://dods.ipsl.jussieu.fr/orchidee/DOXYGEN/webdoc_1240 the web documentation] and [http://dods.ipsl.jussieu.fr/orchidee/DOXYGEN/documentation_reduced_1240.pdf a reduced version] of the pdf document. * branches/ORCHIDEE_DOC, revision 808: [http://dods.ipsl.jussieu.fr/orchidee/DOXYGEN/documentation.pdf the pdf document], [http://dods.ipsl.jussieu.fr/orchidee/DOXYGEN/webdoc the web documentation] and [http://dods.ipsl.jussieu.fr/orchidee/DOXYGEN/documentation_reduced.pdf a reduced version] of the pdf document.[[BR]] '''Specific topics'''[[BR]] * CMIP5 [wiki:Documentation/MetaforOrc METAFOR] questionary. * [wiki:Documentation/OrchideeParameters Parameters]: list of the parameters used by the model == Technical Reports == * 2103/12 B. Guenet [http:"//forge.ipsl.jussieu.fr/orchidee/attachment/wiki/Documentation/REPORT ON THE ROLE OF LITTER IN THE WATER FLUXES.pdf" "REPORT ON THE ROLE OF LITTER IN THE WATER FLUXES.pdf"] == Tutorial Course == * Presentation that gives a brief overview of the processes, structure and inputs/outputs structure of ORCHIDEE [http://dods.ipsl.jussieu.fr/orchidee/WIKI/cours_orchidee_sept2011.pdf cours_orchidee_dec2012.pdf] * Presentaion Get started : Code management, installation, simulation, documentation [http://forge.ipsl.jussieu.fr/orchidee/attachment/wiki/Documentation/introduction_part2_21feb2013_JG.pdf introduction_part2_21feb2013_JG.pdf] * First hands on exercice with ORCHIDEE [http://forge.ipsl.jussieu.fr/orchidee/attachment/wiki/Documentation/TP_ORCHIDEE_base.pdf TP_ORCHIDEE_base.pdf] * Introduction to ORCHIDEE explained by a user, Amélie Rajaud spring 2013 [http://forge.ipsl.jussieu.fr/orchidee/attachment/wiki/Documentation/ORCHIDEE_SIMULATIONS_for_dummies_Rajaud_2013.pdf ORCHIDEE_SIMULATIONS_for_dummies_Rajaud_2013.pdf] == Archives before 2010 == === Masters reports === ==== 2004 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/Sandie.Bousquet_rapport.DEA.pdf Sandie.Bousquet_rapport.DEA.pdf] ==== 2004 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/Edouard.Davin_rapport.DEA.pdf Edouard.Davin_rapport.DEA.pdf] ==== 2005 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/Matthieu_Warnier_Rapport.pdf Matthieu_Warnier_Rapport.pdf] ==== 2006 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/Stage_Bernardo-Frederic.pdf Stage_Bernardo-Frederic.pdf] ==== 2007 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/BrunoRingeval_Juin2007.pdf BrunoRingeval_Juin2007.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/AlexisBerg_Report2006.doc AlexisBerg_Report2006.doc] ==== 2008 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/DavidLeclere_Master2_Memoire2008.pdf DavidLeclere_Master2_Memoire2008.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/ErwanRogard_Master1_Memoire2008.pdf ErwanRogard_Master1_Memoire2008.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/ErwanRogard_Master2_Juin2009.pdf ErwanRogard_Master2_Juin2009.pdf] === Presentations === ==== 2003 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/ORCHIDEE_noblet_021003.pdf ORCHIDEE_noblet_021003.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/ORCHIDEE_viovy_021003.pdf ORCHIDEE_viovy_021003.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/ORCHIDEE_benshila_021003.ppt ORCHIDEE_benshila_021003.ppt] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/ORCHIDEE_krinner_021003.ppt ORCHIDEE_krinner_021003.ppt] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/ORCHIDEE_noblet_021003.ppt ORCHIDEE_noblet_021003.ppt] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/ORCHIDEE_viovy_021003.ppt ORCHIDEE_viovy_021003.ppt] ==== 2006 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/presentation_Bernardo-Fred.pdf presentation_Bernardo-Fred.pdf] ==== 2008 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2008/130508/Bacour_-_ORCHIDEE.pdf Bacour_-_ORCHIDEE.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2008/130508/expose_Camille_Risi.pdf expose_Camille_Risi.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2008/130508/Guimberteau_0805_Cycle_de_Leau_Mississippi.pdf Guimberteau_0805_Cycle_de_Leau_Mississippi.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2008/130508/2008-05-13_Bellassen_-_Seminaire_Orchidee.ppt 2008-05-13_Bellassen_-_Seminaire_Orchidee.ppt] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2008/130508/ORCHIDEE_biofuels_Nicolas_Vuichard.ppt ORCHIDEE_biofuels_Nicolas_Vuichard.ppt] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2008/130508/presentation_ROrch_David_Leclere.ppt presentation_ROrch_David_Leclere.ppt] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2008/130508/Presentation_Stage_Erwan_Rogard.ppt Presentation_Stage_Erwan_Rogard.ppt] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2008/130508/ORCHIDEE_biofuels_Nicolas_Vuichard.ppt ORCHIDEE_biofuels_Nicolas_Vuichard.ppt] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2008/130508/presentation_ROrch_David_Leclere.ppt presentation_ROrch_David_Leclere.ppt] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2008/130508/Presentation_Stage_Erwan_Rogard.ppt Presentation_Stage_Erwan_Rogard.ppt] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2008/130508/reunion_orch_13mai_Alexis_Berg.ppt reunion_orch_13mai_Alexis_Berg.ppt] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2008/130508/reunion_ORCHIDEE_Bruno_Ringeval.ppt reunion_ORCHIDEE_Bruno_Ringeval.ppt] ==== 2009 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2009/091214_Delpierre_CASTANEA.pdf 091214_Delpierre_CASTANEA.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2009/Bacour_Reunion_ORC_20090921.pdf Bacour_Reunion_ORC_20090921.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2009/Berg_Reunion_ORC_20090921.pdf Berg_Reunion_ORC_20090921.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2009/Brender_Reunion_ORC_20090921.pdf Brender_Reunion_ORC_20090921.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2009/Gouttevin_Reunion_ORC_20090921.pdf Gouttevin_Reunion_ORC_20090921.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2009/Hourdin_F_Reunion_ORC_20090921.pdf Hourdin_F_Reunion_ORC_20090921.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2009/Li_Reunion_ORC_20090921.pdf Li_Reunion_ORC_20090921.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2009/091214_Delpierre_CASTANEA.ppt 091214_Delpierre_CASTANEA.ppt] === Meeting reports === ==== 2005 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2005/CR_ORCHIDEE_080205.doc CR_ORCHIDEE_080205.doc] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2005/CR_ORCHIDEE_080305.doc CR_ORCHIDEE_080305.doc] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2005/CR_ORCHIDEE_120405.doc CR_ORCHIDEE_120405.doc] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2005/CR_ORCHIDEE_170505.doc CR_ORCHIDEE_170505.doc] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2005/CR_ORCHIDEE_200905.doc CR_ORCHIDEE_200905.doc] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2005/CR_ORCHIDEE_220605.doc CR_ORCHIDEE_220605.doc] ==== 2006 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2006/CR_160106.doc CR_ORCHIDEE_160106.doc] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2006/CR_210206.doc CR_ORCHIDEE_210206.doc] ==== 2008 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2008/Reunion_crops_080408.doc Reunion_crops_080408.doc] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/2008/CR_LSCE.ORCHIDEE_170308.pdf CR_LSCE.ORCHIDEE_170308.pdf] === Technical reports === ==== 2000 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/sechiba.pdf sechiba.pdf] ==== 2003 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/ORCHIDEE_benshila_021003.pdf ORCHIDEE_benshila_021003.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/ORCHIDEE_krinner_021003.pdf ORCHIDEE_krinner_021003.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/orchidee_tree.pdf orchidee_tree.pdf] ==== 2004 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/Fiche_ORCHIDEE_Nov2004.pdf Fiche_ORCHIDEE_Nov2004.pdf] ==== 2005 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/howtocvs.pdf howtocvs.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/orchidee.pdf orchidee.pdf] ==== 2008 ==== * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/Fiche_ORCHIDEE_Branville_2008.pdf Fiche_ORCHIDEE_Branville_2008.pdf] * [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/Fiche_ORCHIDEE_Branville_2008.doc Fiche_ORCHIDEE_Branville_2008.doc] == Phd thesis == * Isabelle Gouttevin, '''Representing high latitudes in a land surface model : soil freezing and model performances''', 2012. Download the manuscript [http://dods.ipsl.jussieu.fr/orchidee/WIKI/PHD_THESIS/Manuscript_IG_print_depot.pdf here (in french)] and the presentation [http://dods.ipsl.jussieu.fr/orchidee/WIKI/PHD_THESIS/Soutenance_IG_EN_send.pdf here (in english)] == Reference paper == * Ducoudré, Nathalie I., Laval, Katia, et Perrier, Alain (1993). '''SECHIBA, a New Set of Parameterizations of the Hydrologic Exchanges at the Land-Atmosphere Interface within the LMD Atmospheric General Circulation Model.''' Journal of Climate, 6(2), 248--273.[http://journals.ametsoc.org/doi/abs/10.1175/1520-0442%281993%29006%3C0248%3ASANSOP%3E2.0.CO%3B2 link] * Polcher, J., Laval, K., Dümenil, L., Lean, J., et Rowntree, P. R. (1996). '''Comparing three land surface schemes used in general circulation models.''' Journal of Hydrology, 180(1-4), 373--394. [http://www.sciencedirect.com/science/article/pii/0022169495028862 link] * Ducharne, A., Laval, K., et Polcher, J. (1998). '''Sensitivity of the hydrological cycle to the parametrization of soil hydrology in a GCM.''' Climate Dynamics, 14, 307--327. [http://www.springerlink.com/content/6kcrkqp1vdeu2lm9/ link] * Rosnay, P. de et Polcher, J. (1999). '''Modelling root water uptake in a complex land surface scheme coupled to a GCM.''' Hydrol. Earth Syst. Sci., 2(2/3), 239--255. [http://www.hydrol-earth-syst-sci.net/2/239/1998/hess-2-239-1998.html link] * Krinner, G., Viovy, N., Noblet-Ducoudre, N. de, Ogee, J., Polcher, J., Friedlingstein, P., Ciais, P., Sitch, S., and Prentice, I. C (2005). '''A dynamic global vegetation model for studies of the coupled atmosphere-biosphere system.''' Global Biogeochem. Cycles, 19, GB1015. [http://europa.agu.org/?view=article&uri=/journals/gb/gb0501/2003GB002199/2003GB002199.xml&t=2005,krinner link] * d'Orgeval, T. et Polcher, J. (2008). '''Impacts of precipitation events and land-use changes on West African river discharges during the years 1951--2000.''' Climate Dynamics, 31(2), 249--262. [http://www.springerlink.com/content/k221658437u00qj8/ link] * Guimberteau M., Laval K., Perrier A. and Polcher J.: '''Global effect of irrigation and its impact on the onset of the Indian summer monsoon''', Climate Dynamics, in press (Available online 5 Dec. 2011), doi:10.1007/s00382-011-1252-5 [http://www.springerlink.com/content/w7748168783p7r69/ link] * Guimberteau, M., Drapeau, G., Ronchail, J., Sultan, B., Polcher, J., Martinez, J.-M., Prigent, C., Guyot, J.-L., Cochonneau, G., Espinoza, J. C., Filizola, N., Fraizy, P., Lavado, W., De Oliveira, E., Pombosa, R., Noriega, L., and Vauchel, P. (2012): '''Discharge simulation in the sub-basins of the Amazon using ORCHIDEE forced by new datasets''', Hydrol. Earth Syst. Sci., 16, 911-935, doi:10.5194/hess-16-911-2012, 2012 [http://www.hydrol-earth-syst-sci.net/16/911/2012/hess-16-911-2012.html link] * Guimberteau M., Perrier A., Laval K. and Polcher J. (2012): '''A comprehensive approach to analyze discrepancies between land surface models and in-situ measurements: a case study over the US and Illinois with SECHIBA forced by NLDAS''', Hydrol. Earth Syst. Sci., 16, 3973-3988, doi:10.5194/hess-16-3973-2012, 2012 [http://www.hydrol-earth-syst-sci.net/16/3973/2012/hess-16-3973-2012.html link] == Other Presentations == * Parallelism : To know about how ORCHIDEE is parallelized, look at the following page : [wiki:ParallelVersion]. * Technical notes from G. Krinner that give the main equations of STOMATE and LPJ components. [http://www.ipsl.jussieu.fr/~ssipsl/doc/note.technique_krinner99.ps note.technique_krinner99.ps][[BR]] * Presentation that gives the structure in which ORCHIDEE was coded (2000). [http://dods.ipsl.jussieu.fr/orchidee/WEBORCHIDEE/orchidee.pdf orchidee.pdf] * Manuals : Written by Fabienne Maignan and Martial Mancip in 2008. * [http://dods.ipsl.jussieu.fr/orchidee/WIKI/USERS_MANUAL/ICD_080416.doc Interface Control Document][[BR]] * [http://dods.ipsl.jussieu.fr/orchidee/WIKI/USERS_MANUAL/DD_080414.doc Design Document][[BR]] * [http://dods.ipsl.jussieu.fr/orchidee/WIKI/USERS_MANUAL/UM_080417.doc User Manual] (Some parts of the user manual need to be updated.)