Changeset 705 for codes/icosagcm/devel/Python/env/ifort_CICLAD.env

Timestamp:

06/20/18 15:31:05 (6 years ago)

Author:

dubos

Message:

devel : fixes build for CICLAD

File:

• codes/icosagcm/devel/Python/env/ifort_CICLAD.env (moved) (moved from codes/icosagcm/devel/Python/env/CICLAD.env) (4 diffs)

codes/icosagcm/devel/Python/env/ifort_CICLAD.env

@@ -1 @@
-module purge
-module load intel/15.0.6.233
-module load openmpi/1.6.5-ifort
-module load hdf5/1.8.18-parallel-ifort
-module load netcdf4/4.4.1.1-parallel-ifort
+# arch.env and arch.path should be sourced before sourcing this script
 module load python/2.7-anaconda
 
-# If not done yet, certain python packages must be installed in a dynamico-only conda environment :
+# If not done yet, certain python packages must be installed in a dynamico-only conda environment of yours :
 #   conda create -n dynamico python
 #   source activate dynamico
@@ -12 +8 @@
 
 # netCDF4 must be installed manually in order to use the netCDF library from the modules (requires Cython, see above)
-# for this download and unpack 
-#   https://pypi.python.org/packages/6a/37/49fd7cc21af0fb173e40de5e15f7fdd48d521429922a90347219c77b0c36/netCDF4-1.2.9.tar.gz#md5=e320491d52c42e937e6df47b56a2579c
-# then
-#   python setup.py build
-#   python setup.py install
+# for unpack Python/extern/netCDF4-1.2.9.tar.gz then
+#   LDFLAGS='-lirc' python setup.py build
+#   cp -pr build/lib.linux-x86_64-2.7/net* ~/.conda/envs/dynamico/lib/python2.7/site-packages/
+# NOTE : libirc.so is the intel runtime library and is needed at runtime.
+# FIXME : python setup.py install does not seem to install anything, hence 'cp -pr ...'. There must be a better way.
 
 # CICLAD does not have a parmetis module
 # compiling parmetis uses cmake, installed above using pip because the system-wide cmake might not work with the modules
-# then download parmetis from 
-#   http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/parmetis-4.0.3.tar.gz
-# unpack, follow workaround given in 
-#   https://stackoverflow.com/questions/35058709/building-shared-parmetis-4-0-3
-# then
+# for this unpack Python/extern/parmetis-4.0.3.tar.gz then
 #   make config shared=1 prefix=$HOME/.conda/envs/dynamico
 #   make install
@@ -30 +22 @@
 #   cp $(find . -name 'libmetis.so') $HOME/.conda/envs/dynamico/lib/
 #   cp $(find . -name 'metis.h') $HOME/.conda/envs/dynamico/include/
+# NOTE : the tar.gz is derived from http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/parmetis-4.0.3.tar.gz 
+#        with modifications along the lines of
+#        https://stackoverflow.com/questions/35058709/building-shared-parmetis-4-0-3
 
 source activate dynamico
 PARMETIS_CFLAGS="-I$HOME/.conda/envs/dynamico/include"
-PARMETIS_LDFLAGS="-L$HOME/.conda/envs/dynamico/lib"
+PARMETIS_LDFLAGS="-L$HOME/.conda/envs/dynamico/lib -liomp5"
 
 export NETCDF_LDFLAGS="$(nf-config --flibs) -lhdf5 -lz -ldl -lm"
@@ -43 +38 @@
 export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$HOME/.conda/envs/dynamico/lib
 
-BASEDIR=$(dirname ${BASH_SOURCE[0]})
-. $BASEDIR/linux.env
+. linux.env