Changeset 977 for codes/icosagcm/devel/make_python

Timestamp:

09/26/19 18:49:01 (5 years ago)

Author:

dubos

Message:

devel/Python : now only dynamico.dev modules require link to DYNAMICO/XIOS shared objects

File:

• codes/icosagcm/devel/make_python (modified) (3 diffs)

codes/icosagcm/devel/make_python

@@ -13 +13 @@
     rm -rf *.o *.so build/
 }
-
-#------------------ Default action , invoked by : './make_python' --------------------
 
 function make_so()
@@ -33 +31 @@
 }
 
-
-function cmd_()
+function check_python_modules()
 {
-    echo "XIOS_ROOTDIR : $XIOS_ROOTDIR"
     MISSING=""
-    for module in netCDF4 jinja2 mpi4py; do
+    for module in $*; do
         echo "import $module"
         python -c "import $module" || MISSING="$MISSING $module"
@@ -49 +45 @@
         exit
     fi
+}
 
-    log mpicc -c -std=c99 -fPIC $PARMETIS_CFLAGS Python/src/partition.c -o obj/partition.o
-    make_so $XIOS_ROOTDIR/lib/libxios.a $LIBDIR/libxios.so "$NETCDF_LDFLAGS -lstdc++"
-    make_so $LIBDIR/libicosa.a $LIBDIR/libicosa.so "-L$LIBDIR -lxios $KERNELS_LDFLAGS" "physics_external_mod.o physics_mod.o timeloop_gcm_mod.o icosa_init_mod.o" obj/partition.o
-
-    # Cythonize Python modules
-    cd $DYNAMICO_ROOT/Python/src
-    NUMPY=$(python -c 'import numpy as np ; print np.get_include()')
-    CYTHONFLAGS="$SOFLAGS $LDFLAGS -L$LIBDIR -licosa $KERNELS_LDFLAGS"
-    LDSHARED="$LINK" CFLAGS="-fno-strict-aliasing -O2 -I$NUMPY" LDFLAGS="$CYTHONFLAGS" log python setup.py build_ext --inplace || exit
-
-    cp -fpr $DYNAMICO_ROOT/Python/dynamico $DYNAMICO_ROOT/lib
-    cp -fp *.so $DYNAMICO_ROOT/lib/dynamico/dev/
+function check_dynamico_modules()
+{
     cd $DYNAMICO_ROOT
-
-    for module in dev.cxios dev.unstructured meshes dyn time_step DCMIP; do
+    for module in $*; do
         echo "import dynamico.$module"
         LD_PRELOAD=$PYTHON_PRELOAD python -c "import dynamico.$module"
     done
 }
+
+function cythonize()
+{
+    EXTRA=$1
+    NUMPY=$(python -c 'import numpy as np ; print np.get_include()')
+    CYTHONFLAGS="$SOFLAGS $LDFLAGS -L$LIBDIR $KERNELS_LDFLAGS $EXTRA"
+    CC=mpicc LDSHARED="$LINK" CFLAGS="-fno-strict-aliasing -O2 -I$NUMPY $PARMETIS_CFLAGS" LDFLAGS="$CYTHONFLAGS" log python setup.py build_ext --inplace || exit
+    rm -rf build *.c # temp files
+}
+
+#------------------ Default action , invoked by : './make_python' --------------------
+
+function make_user()
+{
+    check_python_modules netCDF4 mpi4py
+    # Cythonize Python modules
+    cd $DYNAMICO_ROOT/Python/dynamico
+    cythonize
+    rm -rf build *.c # temp files
+    cp -fpr $DYNAMICO_ROOT/Python/dynamico $DYNAMICO_ROOT/lib
+    check_dynamico_modules partition meshes dyn time_step DCMIP
+}
+
+function make_dev()
+{
+    check_python_modules jinja2
+    echo "XIOS_ROOTDIR : $XIOS_ROOTDIR"
+
+    make_so $XIOS_ROOTDIR/lib/libxios.a $LIBDIR/libxios.so "$NETCDF_LDFLAGS -lstdc++"
+    make_so $LIBDIR/libicosa.a $LIBDIR/libicosa.so "-L$LIBDIR -lxios $KERNELS_LDFLAGS" "physics_external_mod.o physics_mod.o timeloop_gcm_mod.o icosa_init_mod.o"
+
+    cd $DYNAMICO_ROOT/Python/dev
+    cythonize "-licosa"
+    cp -fpr $DYNAMICO_ROOT/Python/dev $DYNAMICO_ROOT/lib/dynamico/
+    check_dynamico_modules dev.cxios dev.unstructured
+}
+
+function cmd_()
+{
+    make_user
+}
+
+function cmd_dev()
+{
+    make_user
+    make_dev
+}
+
 
 #------------------------- script starts here ------------------------