[219] | 1 | #include "nc4_data_output.hpp" |
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| 2 | |
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| 3 | #include <boost/lexical_cast.hpp> |
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[352] | 4 | #include "attribute_template.hpp" |
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| 5 | #include "group_template.hpp" |
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[219] | 6 | |
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| 7 | #include "file.hpp" |
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| 8 | #include "calendar.hpp" |
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[278] | 9 | #include "context.hpp" |
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[300] | 10 | #include "context_server.hpp" |
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[498] | 11 | #include "netCdfException.hpp" |
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| 12 | #include "exception.hpp" |
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[1158] | 13 | #include "timer.hpp" |
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| 14 | #include "uuid.hpp" |
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[335] | 15 | namespace xios |
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[219] | 16 | { |
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[878] | 17 | /// ////////////////////// Dfinitions ////////////////////// /// |
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[219] | 18 | CNc4DataOutput::CNc4DataOutput |
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[1158] | 19 | (CFile* file, const StdString & filename, bool exist) |
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[219] | 20 | : SuperClass() |
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| 21 | , SuperClassWriter(filename, exist) |
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| 22 | , filename(filename) |
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[1158] | 23 | , file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none) |
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[219] | 24 | { |
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[1158] | 25 | SuperClass::type = MULTI_FILE; |
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[219] | 26 | } |
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| 27 | |
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| 28 | CNc4DataOutput::CNc4DataOutput |
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[1158] | 29 | (CFile* file, const StdString & filename, bool exist, bool useClassicFormat, bool useCFConvention, |
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[924] | 30 | MPI_Comm comm_file, bool multifile, bool isCollective, const StdString& timeCounterName) |
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[219] | 31 | : SuperClass() |
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[878] | 32 | , SuperClassWriter(filename, exist, useClassicFormat, useCFConvention, &comm_file, multifile, timeCounterName) |
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[379] | 33 | , comm_file(comm_file) |
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[219] | 34 | , filename(filename) |
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[335] | 35 | , isCollective(isCollective) |
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[1158] | 36 | , file(file),hasTimeInstant(false),hasTimeCentered(false), timeCounterType(none) |
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[219] | 37 | { |
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[1158] | 38 | SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE; |
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[219] | 39 | } |
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| 40 | |
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| 41 | CNc4DataOutput::~CNc4DataOutput(void) |
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[879] | 42 | { /* Ne rien faire de plus */ } |
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[219] | 43 | |
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| 44 | ///-------------------------------------------------------------- |
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| 45 | |
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| 46 | const StdString & CNc4DataOutput::getFileName(void) const |
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| 47 | { |
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| 48 | return (this->filename); |
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| 49 | } |
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| 50 | |
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| 51 | //--------------------------------------------------------------- |
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| 52 | |
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[347] | 53 | void CNc4DataOutput::writeDomain_(CDomain* domain) |
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[219] | 54 | { |
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[1129] | 55 | domain->computeWrittenIndex(); |
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[1249] | 56 | domain->computeWrittenCompressedIndex(comm_file); |
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| 57 | |
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[881] | 58 | if (domain->type == CDomain::type_attr::unstructured) |
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| 59 | { |
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| 60 | if (SuperClassWriter::useCFConvention) |
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| 61 | writeUnstructuredDomain(domain) ; |
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| 62 | else |
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| 63 | writeUnstructuredDomainUgrid(domain) ; |
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| 64 | return ; |
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| 65 | } |
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[488] | 66 | |
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[347] | 67 | CContext* context = CContext::getCurrent() ; |
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[300] | 68 | CContextServer* server=context->server ; |
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[488] | 69 | |
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[219] | 70 | if (domain->IsWritten(this->filename)) return; |
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| 71 | domain->checkAttributes(); |
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[488] | 72 | |
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| 73 | if (domain->isEmpty()) |
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[881] | 74 | if (SuperClass::type==MULTI_FILE) return; |
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[219] | 75 | |
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| 76 | std::vector<StdString> dim0, dim1; |
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[772] | 77 | StdString domid = domain->getDomainOutputName(); |
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[318] | 78 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
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[706] | 79 | if (isWrittenDomain(domid)) return ; |
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[774] | 80 | else setWrittenDomain(domid); |
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[1132] | 81 | |
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| 82 | int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex; |
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[449] | 83 | |
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[488] | 84 | |
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[1158] | 85 | StdString dimXid, dimYid ; |
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| 86 | |
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| 87 | nc_type typePrec ; |
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| 88 | if (domain->prec.isEmpty()) typePrec = NC_FLOAT ; |
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| 89 | else if (domain->prec==4) typePrec = NC_FLOAT ; |
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| 90 | else if (domain->prec==8) typePrec = NC_DOUBLE ; |
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| 91 | |
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[664] | 92 | bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear); |
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[449] | 93 | switch (domain->type) |
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[433] | 94 | { |
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[449] | 95 | case CDomain::type_attr::curvilinear : |
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| 96 | dimXid = StdString("x").append(appendDomid); |
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| 97 | dimYid = StdString("y").append(appendDomid); |
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| 98 | break ; |
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[664] | 99 | case CDomain::type_attr::rectilinear : |
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[449] | 100 | dimXid = StdString("lon").append(appendDomid); |
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| 101 | dimYid = StdString("lat").append(appendDomid); |
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| 102 | break; |
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[488] | 103 | } |
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| 104 | |
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[617] | 105 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
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| 106 | |
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[449] | 107 | string lonid,latid,bounds_lonid,bounds_latid ; |
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[611] | 108 | string areaId = "area" + appendDomid; |
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[391] | 109 | /* |
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[300] | 110 | StdString lonid_loc = (server->intraCommSize > 1) |
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[318] | 111 | ? StdString("lon").append(appendDomid).append("_local") |
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[278] | 112 | : lonid; |
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[300] | 113 | StdString latid_loc = (server->intraCommSize > 1) |
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[318] | 114 | ? StdString("lat").append(appendDomid).append("_local") |
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[278] | 115 | : latid; |
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[391] | 116 | */ |
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[219] | 117 | |
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[1129] | 118 | CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer; |
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| 119 | int nbWritten = indexToWrite.numElements(); |
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| 120 | CArray<double,1> writtenLat, writtenLon; |
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| 121 | CArray<double,2> writtenBndsLat, writtenBndsLon; |
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| 122 | CArray<double,1> writtenArea; |
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| 123 | |
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| 124 | if (domain->hasLonLat) |
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| 125 | { |
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| 126 | writtenLat.resize(nbWritten); |
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| 127 | writtenLon.resize(nbWritten); |
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| 128 | for (int idx = 0; idx < nbWritten; ++idx) |
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| 129 | { |
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| 130 | writtenLat(idx) = domain->latvalue(indexToWrite(idx)); |
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| 131 | writtenLon(idx) = domain->lonvalue(indexToWrite(idx)); |
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| 132 | } |
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| 133 | |
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| 134 | |
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| 135 | if (domain->hasBounds) |
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| 136 | { |
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| 137 | int nvertex = domain->nvertex, idx; |
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| 138 | writtenBndsLat.resize(nvertex, nbWritten); |
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| 139 | writtenBndsLon.resize(nvertex, nbWritten); |
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| 140 | CArray<double,2>& boundslat = domain->bounds_latvalue; |
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| 141 | CArray<double,2>& boundslon = domain->bounds_lonvalue; |
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| 142 | for (idx = 0; idx < nbWritten; ++idx) |
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| 143 | for (int nv = 0; nv < nvertex; ++nv) |
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| 144 | { |
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| 145 | writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx))); |
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| 146 | writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx))); |
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| 147 | } |
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| 148 | } |
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| 149 | } |
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| 150 | |
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| 151 | if (domain->hasArea) |
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| 152 | { |
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| 153 | writtenArea.resize(nbWritten); |
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| 154 | for (int idx = 0; idx < nbWritten; ++idx) |
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| 155 | { |
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| 156 | writtenArea(idx) = domain->areavalue(indexToWrite(idx)); |
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| 157 | } |
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| 158 | } |
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| 159 | |
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[498] | 160 | try |
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[219] | 161 | { |
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[498] | 162 | switch (SuperClass::type) |
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| 163 | { |
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| 164 | case (MULTI_FILE) : |
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| 165 | { |
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| 166 | // if (domain->isEmpty()) return; |
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[488] | 167 | |
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[498] | 168 | if (server->intraCommSize > 1) |
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| 169 | { |
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| 170 | // SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue()); |
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| 171 | // SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue()); |
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| 172 | } |
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[286] | 173 | |
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[498] | 174 | switch (domain->type) |
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| 175 | { |
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| 176 | case CDomain::type_attr::curvilinear : |
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| 177 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 178 | lonid = StdString("nav_lon").append(appendDomid); |
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| 179 | latid = StdString("nav_lat").append(appendDomid); |
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| 180 | break ; |
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[664] | 181 | case CDomain::type_attr::rectilinear : |
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[498] | 182 | lonid = StdString("lon").append(appendDomid); |
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| 183 | latid = StdString("lat").append(appendDomid); |
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| 184 | dim0.push_back(dimYid); |
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| 185 | dim1.push_back(dimXid); |
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| 186 | break; |
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| 187 | } |
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[488] | 188 | |
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[617] | 189 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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| 190 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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| 191 | |
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[1099] | 192 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni); |
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| 193 | SuperClassWriter::addDimension(dimYid, domain->zoom_nj); |
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[488] | 194 | |
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[617] | 195 | if (domain->hasBounds) |
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| 196 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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| 197 | |
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[498] | 198 | if (server->intraCommSize > 1) |
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| 199 | { |
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[1099] | 200 | this->writeLocalAttributes(domain->zoom_ibegin, |
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| 201 | domain->zoom_ni, |
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| 202 | domain->zoom_jbegin, |
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| 203 | domain->zoom_nj, |
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[616] | 204 | appendDomid); |
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[488] | 205 | |
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[628] | 206 | if (singleDomain) |
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| 207 | this->writeLocalAttributes_IOIPSL(dimXid, dimYid, |
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[1099] | 208 | domain->zoom_ibegin, |
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| 209 | domain->zoom_ni, |
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| 210 | domain->zoom_jbegin, |
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| 211 | domain->zoom_nj, |
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[628] | 212 | domain->ni_glo,domain->nj_glo, |
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| 213 | server->intraCommRank,server->intraCommSize); |
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[449] | 214 | } |
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[488] | 215 | |
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[665] | 216 | if (domain->hasLonLat) |
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[498] | 217 | { |
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[665] | 218 | switch (domain->type) |
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| 219 | { |
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| 220 | case CDomain::type_attr::curvilinear : |
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[1158] | 221 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
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| 222 | SuperClassWriter::addVariable(lonid, typePrec, dim0); |
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[665] | 223 | break ; |
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| 224 | case CDomain::type_attr::rectilinear : |
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[1158] | 225 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
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| 226 | SuperClassWriter::addVariable(lonid, typePrec, dim1); |
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[665] | 227 | break ; |
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| 228 | } |
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[488] | 229 | |
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[665] | 230 | this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
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| 231 | this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
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[219] | 232 | |
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[665] | 233 | if (domain->hasBounds) |
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| 234 | { |
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| 235 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
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| 236 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
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[617] | 237 | |
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[665] | 238 | dim0.clear(); |
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| 239 | dim0.push_back(dimYid); |
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| 240 | dim0.push_back(dimXid); |
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| 241 | dim0.push_back(dimVertId); |
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[1158] | 242 | SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0); |
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| 243 | SuperClassWriter::addVariable(bounds_latid, typePrec, dim0); |
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[665] | 244 | } |
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[617] | 245 | } |
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| 246 | |
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[498] | 247 | dim0.clear(); |
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[616] | 248 | dim0.push_back(dimYid); |
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[498] | 249 | dim0.push_back(dimXid); |
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[219] | 250 | |
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| 251 | |
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[498] | 252 | // supress mask if (server->intraCommSize > 1) |
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| 253 | // supress mask { |
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| 254 | // supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0); |
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| 255 | // supress mask |
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| 256 | // supress mask this->writeMaskAttributes(maskid, |
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| 257 | // supress mask domain->data_dim.getValue()/*, |
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| 258 | // supress mask domain->data_ni.getValue(), |
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| 259 | // supress mask domain->data_nj.getValue(), |
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| 260 | // supress mask domain->data_ibegin.getValue(), |
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| 261 | // supress mask domain->data_jbegin.getValue()*/); |
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| 262 | // supress mask } |
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[488] | 263 | |
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[498] | 264 | //SuperClassWriter::setDefaultValue(maskid, &dvm); |
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[219] | 265 | |
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[611] | 266 | if (domain->hasArea) |
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| 267 | { |
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[1158] | 268 | SuperClassWriter::addVariable(areaId, typePrec, dim0); |
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[614] | 269 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
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[611] | 270 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
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| 271 | } |
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| 272 | |
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[498] | 273 | SuperClassWriter::definition_end(); |
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[449] | 274 | |
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[665] | 275 | if (domain->hasLonLat) |
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[498] | 276 | { |
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[665] | 277 | switch (domain->type) |
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| 278 | { |
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[1129] | 279 | case CDomain::type_attr::curvilinear : |
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| 280 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0); |
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| 281 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0); |
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[665] | 282 | break; |
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| 283 | case CDomain::type_attr::rectilinear : |
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[1129] | 284 | CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->zoom_ni)) ; |
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[665] | 285 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0); |
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[1129] | 286 | CArray<double,1> lon = writtenLon(Range(0,domain->zoom_ni-1)) ; |
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[665] | 287 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0); |
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| 288 | break; |
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| 289 | } |
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[611] | 290 | |
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[665] | 291 | if (domain->hasBounds) |
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| 292 | { |
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[1129] | 293 | SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0); |
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| 294 | SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0); |
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[665] | 295 | } |
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[617] | 296 | } |
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| 297 | |
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[611] | 298 | if (domain->hasArea) |
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[1129] | 299 | { |
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[1132] | 300 | SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0); |
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[1129] | 301 | } |
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| 302 | |
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[498] | 303 | SuperClassWriter::definition_start(); |
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[219] | 304 | |
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[498] | 305 | break; |
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| 306 | } |
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| 307 | case (ONE_FILE) : |
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| 308 | { |
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[1099] | 309 | SuperClassWriter::addDimension(dimXid, domain->global_zoom_ni); |
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| 310 | SuperClassWriter::addDimension(dimYid, domain->global_zoom_nj); |
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[286] | 311 | |
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[617] | 312 | if (domain->hasBounds) |
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| 313 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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| 314 | |
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[665] | 315 | if (domain->hasLonLat) |
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[498] | 316 | { |
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[665] | 317 | switch (domain->type) |
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| 318 | { |
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| 319 | case CDomain::type_attr::curvilinear : |
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| 320 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 321 | lonid = StdString("nav_lon").append(appendDomid); |
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| 322 | latid = StdString("nav_lat").append(appendDomid); |
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[1158] | 323 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
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| 324 | SuperClassWriter::addVariable(lonid, typePrec, dim0); |
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[665] | 325 | break; |
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[449] | 326 | |
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[665] | 327 | case CDomain::type_attr::rectilinear : |
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| 328 | dim0.push_back(dimYid); |
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| 329 | dim1.push_back(dimXid); |
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| 330 | lonid = StdString("lon").append(appendDomid); |
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| 331 | latid = StdString("lat").append(appendDomid); |
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[1158] | 332 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
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| 333 | SuperClassWriter::addVariable(lonid, typePrec, dim1); |
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[665] | 334 | break; |
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| 335 | } |
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| 336 | |
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| 337 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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| 338 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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| 339 | |
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| 340 | this->writeAxisAttributes |
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| 341 | (lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
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| 342 | this->writeAxisAttributes |
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| 343 | (latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
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| 344 | |
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| 345 | if (domain->hasBounds) |
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| 346 | { |
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| 347 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
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| 348 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
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| 349 | |
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| 350 | dim0.clear(); |
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[498] | 351 | dim0.push_back(dimYid); |
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[665] | 352 | dim0.push_back(dimXid); |
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| 353 | dim0.push_back(dimVertId); |
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[1158] | 354 | SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0); |
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| 355 | SuperClassWriter::addVariable(bounds_latid, typePrec, dim0); |
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[665] | 356 | } |
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[498] | 357 | } |
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[611] | 358 | |
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| 359 | if (domain->hasArea) |
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| 360 | { |
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| 361 | dim0.clear(); |
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| 362 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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[1158] | 363 | SuperClassWriter::addVariable(areaId, typePrec, dim0); |
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[614] | 364 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
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[611] | 365 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
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| 366 | dim0.clear(); |
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| 367 | } |
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| 368 | |
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| 369 | SuperClassWriter::definition_end(); |
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[286] | 370 | |
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[498] | 371 | switch (domain->type) |
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[384] | 372 | { |
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[498] | 373 | case CDomain::type_attr::curvilinear : |
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[449] | 374 | { |
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[498] | 375 | std::vector<StdSize> start(2) ; |
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| 376 | std::vector<StdSize> count(2) ; |
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| 377 | if (domain->isEmpty()) |
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| 378 | { |
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[611] | 379 | start[0]=0 ; start[1]=0 ; |
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[498] | 380 | count[0]=0 ; count[1]=0 ; |
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| 381 | } |
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| 382 | else |
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| 383 | { |
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[1099] | 384 | start[1]=domain->zoom_ibegin-domain->global_zoom_ibegin; |
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| 385 | start[0]=domain->zoom_jbegin-domain->global_zoom_jbegin; |
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| 386 | count[1]=domain->zoom_ni ; count[0]=domain->zoom_nj ; |
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[498] | 387 | } |
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[488] | 388 | |
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[665] | 389 | if (domain->hasLonLat) |
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| 390 | { |
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[1129] | 391 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count); |
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| 392 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count); |
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[665] | 393 | } |
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[498] | 394 | break; |
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| 395 | } |
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[664] | 396 | case CDomain::type_attr::rectilinear : |
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[449] | 397 | { |
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[665] | 398 | if (domain->hasLonLat) |
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[498] | 399 | { |
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[665] | 400 | std::vector<StdSize> start(1) ; |
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| 401 | std::vector<StdSize> count(1) ; |
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| 402 | if (domain->isEmpty()) |
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| 403 | { |
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| 404 | start[0]=0 ; |
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| 405 | count[0]=0 ; |
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[1129] | 406 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count); |
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| 407 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count); |
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[665] | 408 | } |
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| 409 | else |
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[1129] | 410 | { |
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[1099] | 411 | start[0]=domain->zoom_jbegin-domain->global_zoom_jbegin; |
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[1143] | 412 | count[0]=domain->zoom_nj; |
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[1129] | 413 | CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->zoom_ni)); |
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[665] | 414 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count); |
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| 415 | |
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[1099] | 416 | start[0]=domain->zoom_ibegin-domain->global_zoom_ibegin; |
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[1143] | 417 | count[0]=domain->zoom_ni; |
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[1129] | 418 | CArray<double,1> lon = writtenLon(Range(0,domain->zoom_ni-1)); |
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[665] | 419 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count); |
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| 420 | } |
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[498] | 421 | } |
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| 422 | break; |
---|
[449] | 423 | } |
---|
[384] | 424 | } |
---|
[611] | 425 | |
---|
[617] | 426 | if (domain->hasBounds) |
---|
| 427 | { |
---|
| 428 | std::vector<StdSize> start(3); |
---|
| 429 | std::vector<StdSize> count(3); |
---|
| 430 | if (domain->isEmpty()) |
---|
| 431 | { |
---|
| 432 | start[2] = start[1] = start[0] = 0; |
---|
| 433 | count[2] = count[1] = count[0] = 0; |
---|
| 434 | } |
---|
| 435 | else |
---|
| 436 | { |
---|
| 437 | start[2] = 0; |
---|
[1099] | 438 | start[1] = domain->zoom_ibegin - domain->global_zoom_ibegin; |
---|
| 439 | start[0] = domain->zoom_jbegin - domain->global_zoom_jbegin; |
---|
| 440 | count[2] = domain->nvertex; |
---|
| 441 | count[1] = domain->zoom_ni; |
---|
| 442 | count[0] = domain->zoom_nj; |
---|
[617] | 443 | } |
---|
[1143] | 444 | |
---|
[1129] | 445 | SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0, &start, &count); |
---|
| 446 | SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0, &start, &count); |
---|
[617] | 447 | } |
---|
| 448 | |
---|
[611] | 449 | if (domain->hasArea) |
---|
| 450 | { |
---|
| 451 | std::vector<StdSize> start(2); |
---|
| 452 | std::vector<StdSize> count(2); |
---|
| 453 | |
---|
| 454 | if (domain->isEmpty()) |
---|
| 455 | { |
---|
| 456 | start[0] = 0; start[1] = 0; |
---|
| 457 | count[0] = 0; count[1] = 0; |
---|
| 458 | } |
---|
| 459 | else |
---|
| 460 | { |
---|
[1099] | 461 | start[1] = domain->zoom_ibegin - domain->global_zoom_ibegin; |
---|
| 462 | start[0] = domain->zoom_jbegin - domain->global_zoom_jbegin; |
---|
| 463 | count[1] = domain->zoom_ni; |
---|
| 464 | count[0] = domain->zoom_nj; |
---|
[611] | 465 | } |
---|
[1143] | 466 | |
---|
[1129] | 467 | SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count); |
---|
[611] | 468 | } |
---|
| 469 | |
---|
[498] | 470 | SuperClassWriter::definition_start(); |
---|
| 471 | break; |
---|
| 472 | } |
---|
| 473 | default : |
---|
| 474 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 475 | << "[ type = " << SuperClass::type << "]" |
---|
| 476 | << " not implemented yet !"); |
---|
| 477 | } |
---|
[449] | 478 | } |
---|
[498] | 479 | catch (CNetCdfException& e) |
---|
| 480 | { |
---|
| 481 | StdString msg("On writing the domain : "); |
---|
| 482 | msg.append(domid); msg.append("\n"); |
---|
| 483 | msg.append("In the context : "); |
---|
| 484 | msg.append(context->getId()); msg.append("\n"); |
---|
| 485 | msg.append(e.what()); |
---|
| 486 | ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg); |
---|
| 487 | } |
---|
| 488 | |
---|
[449] | 489 | domain->addRelFile(this->filename); |
---|
| 490 | } |
---|
| 491 | |
---|
[879] | 492 | //-------------------------------------------------------------- |
---|
[878] | 493 | |
---|
[879] | 494 | void CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain) |
---|
| 495 | { |
---|
| 496 | CContext* context = CContext::getCurrent() ; |
---|
| 497 | CContextServer* server=context->server ; |
---|
[878] | 498 | |
---|
[879] | 499 | if (domain->IsWritten(this->filename)) return; |
---|
| 500 | domain->checkAttributes(); |
---|
| 501 | if (domain->isEmpty()) |
---|
| 502 | if (SuperClass::type==MULTI_FILE) return ; |
---|
[878] | 503 | |
---|
[1158] | 504 | nc_type typePrec ; |
---|
| 505 | if (domain->prec.isEmpty()) typePrec = NC_FLOAT ; |
---|
| 506 | else if (domain->prec==4) typePrec = NC_FLOAT ; |
---|
| 507 | else if (domain->prec==8) typePrec = NC_DOUBLE ; |
---|
| 508 | |
---|
[879] | 509 | std::vector<StdString> dim0; |
---|
| 510 | StdString domid = domain->getDomainOutputName(); |
---|
| 511 | StdString domainName = domain->name; |
---|
[924] | 512 | domain->assignMesh(domainName, domain->nvertex); |
---|
[1025] | 513 | domain->mesh->createMeshEpsilon(server->intraComm, domain->lonvalue, domain->latvalue, domain->bounds_lonvalue, domain->bounds_latvalue); |
---|
[878] | 514 | |
---|
[879] | 515 | StdString node_x = domainName + "_node_x"; |
---|
| 516 | StdString node_y = domainName + "_node_y"; |
---|
[878] | 517 | |
---|
[879] | 518 | StdString edge_x = domainName + "_edge_x"; |
---|
| 519 | StdString edge_y = domainName + "_edge_y"; |
---|
| 520 | StdString edge_nodes = domainName + "_edge_nodes"; |
---|
[878] | 521 | |
---|
[879] | 522 | StdString face_x = domainName + "_face_x"; |
---|
| 523 | StdString face_y = domainName + "_face_y"; |
---|
| 524 | StdString face_nodes = domainName + "_face_nodes"; |
---|
[902] | 525 | StdString face_edges = domainName + "_face_edges"; |
---|
| 526 | StdString edge_faces = domainName + "_edge_face_links"; |
---|
| 527 | StdString face_faces = domainName + "_face_links"; |
---|
[878] | 528 | |
---|
[879] | 529 | StdString dimNode = "n" + domainName + "_node"; |
---|
| 530 | StdString dimEdge = "n" + domainName + "_edge"; |
---|
| 531 | StdString dimFace = "n" + domainName + "_face"; |
---|
| 532 | StdString dimVertex = "n" + domainName + "_vertex"; |
---|
| 533 | StdString dimTwo = "Two"; |
---|
[878] | 534 | |
---|
[879] | 535 | if (!SuperClassWriter::dimExist(dimTwo)) SuperClassWriter::addDimension(dimTwo, 2); |
---|
| 536 | if (!isWrittenDomain(domid)) |
---|
| 537 | { |
---|
| 538 | dim0.clear(); |
---|
| 539 | SuperClassWriter::addVariable(domainName, NC_INT, dim0); |
---|
| 540 | SuperClassWriter::addAttribute("cf_role", StdString("mesh_topology"), &domainName); |
---|
[924] | 541 | SuperClassWriter::addAttribute("long_name", StdString("Topology data of 2D unstructured mesh"), &domainName); |
---|
| 542 | SuperClassWriter::addAttribute("topology_dimension", 2, &domainName); |
---|
[879] | 543 | SuperClassWriter::addAttribute("node_coordinates", node_x + " " + node_y, &domainName); |
---|
| 544 | } |
---|
[878] | 545 | |
---|
[879] | 546 | try |
---|
| 547 | { |
---|
| 548 | switch (SuperClass::type) |
---|
| 549 | { |
---|
| 550 | case (ONE_FILE) : |
---|
| 551 | { |
---|
| 552 | // Adding nodes |
---|
| 553 | if (domain->nvertex == 1) |
---|
| 554 | { |
---|
| 555 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 556 | { |
---|
[902] | 557 | SuperClassWriter::addDimension(dimNode, domain->ni_glo); |
---|
[879] | 558 | dim0.clear(); |
---|
| 559 | dim0.push_back(dimNode); |
---|
[1158] | 560 | SuperClassWriter::addVariable(node_x, typePrec, dim0); |
---|
[879] | 561 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 562 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 563 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
[1158] | 564 | SuperClassWriter::addVariable(node_y, typePrec, dim0); |
---|
[879] | 565 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 566 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 567 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 568 | } |
---|
| 569 | } // domain->nvertex == 1 |
---|
[878] | 570 | |
---|
[879] | 571 | // Adding edges and nodes, if nodes have not been defined previously |
---|
| 572 | if (domain->nvertex == 2) |
---|
| 573 | { |
---|
| 574 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 575 | { |
---|
[924] | 576 | SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo); |
---|
[879] | 577 | dim0.clear(); |
---|
| 578 | dim0.push_back(dimNode); |
---|
[1158] | 579 | SuperClassWriter::addVariable(node_x, typePrec, dim0); |
---|
[879] | 580 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 581 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 582 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
[1158] | 583 | SuperClassWriter::addVariable(node_y, typePrec, dim0); |
---|
[879] | 584 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 585 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 586 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 587 | } |
---|
[924] | 588 | SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName); |
---|
| 589 | SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName); |
---|
| 590 | SuperClassWriter::addDimension(dimEdge, domain->ni_glo); |
---|
| 591 | dim0.clear(); |
---|
| 592 | dim0.push_back(dimEdge); |
---|
[1158] | 593 | SuperClassWriter::addVariable(edge_x, typePrec, dim0); |
---|
[924] | 594 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x); |
---|
| 595 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x); |
---|
| 596 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x); |
---|
[1158] | 597 | SuperClassWriter::addVariable(edge_y, typePrec, dim0); |
---|
[924] | 598 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y); |
---|
| 599 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y); |
---|
| 600 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y); |
---|
| 601 | dim0.clear(); |
---|
| 602 | dim0.push_back(dimEdge); |
---|
| 603 | dim0.push_back(dimTwo); |
---|
| 604 | SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0); |
---|
| 605 | SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes); |
---|
| 606 | SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes); |
---|
| 607 | SuperClassWriter::addAttribute("start_index", 0, &edge_nodes); |
---|
[879] | 608 | } // domain->nvertex == 2 |
---|
[878] | 609 | |
---|
[879] | 610 | // Adding faces, edges, and nodes, if edges and nodes have not been defined previously |
---|
| 611 | if (domain->nvertex > 2) |
---|
| 612 | { |
---|
| 613 | // Nodes |
---|
| 614 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 615 | { |
---|
[924] | 616 | SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo); |
---|
[879] | 617 | dim0.clear(); |
---|
| 618 | dim0.push_back(dimNode); |
---|
[1158] | 619 | SuperClassWriter::addVariable(node_x, typePrec, dim0); |
---|
[879] | 620 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 621 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 622 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
[1158] | 623 | SuperClassWriter::addVariable(node_y, typePrec, dim0); |
---|
[879] | 624 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 625 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 626 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 627 | } |
---|
| 628 | if (!SuperClassWriter::varExist(edge_x) || !SuperClassWriter::varExist(edge_y)) |
---|
| 629 | { |
---|
| 630 | SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName); |
---|
| 631 | SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName); |
---|
[924] | 632 | SuperClassWriter::addDimension(dimEdge, domain->mesh->nbEdgesGlo); |
---|
[879] | 633 | dim0.clear(); |
---|
| 634 | dim0.push_back(dimEdge); |
---|
[1158] | 635 | SuperClassWriter::addVariable(edge_x, typePrec, dim0); |
---|
[879] | 636 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x); |
---|
[924] | 637 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x); |
---|
[879] | 638 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x); |
---|
[1158] | 639 | SuperClassWriter::addVariable(edge_y, typePrec, dim0); |
---|
[879] | 640 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y); |
---|
[924] | 641 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y); |
---|
[879] | 642 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y); |
---|
| 643 | dim0.clear(); |
---|
| 644 | dim0.push_back(dimEdge); |
---|
| 645 | dim0.push_back(dimTwo); |
---|
| 646 | SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0); |
---|
| 647 | SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes); |
---|
| 648 | SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes); |
---|
| 649 | SuperClassWriter::addAttribute("start_index", 0, &edge_nodes); |
---|
| 650 | } |
---|
[924] | 651 | SuperClassWriter::addAttribute("face_coordinates", face_x + " " + face_y, &domainName); |
---|
| 652 | SuperClassWriter::addAttribute("face_node_connectivity", face_nodes, &domainName); |
---|
| 653 | SuperClassWriter::addDimension(dimFace, domain->ni_glo); |
---|
| 654 | SuperClassWriter::addDimension(dimVertex, domain->nvertex); |
---|
| 655 | dim0.clear(); |
---|
| 656 | dim0.push_back(dimFace); |
---|
[1158] | 657 | SuperClassWriter::addVariable(face_x, typePrec, dim0); |
---|
[924] | 658 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &face_x); |
---|
| 659 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh faces."), &face_x); |
---|
| 660 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &face_x); |
---|
[1158] | 661 | SuperClassWriter::addVariable(face_y, typePrec, dim0); |
---|
[924] | 662 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &face_y); |
---|
| 663 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh faces."), &face_y); |
---|
| 664 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &face_y); |
---|
| 665 | dim0.clear(); |
---|
| 666 | dim0.push_back(dimFace); |
---|
| 667 | dim0.push_back(dimVertex); |
---|
| 668 | SuperClassWriter::addVariable(face_nodes, NC_INT, dim0); |
---|
| 669 | SuperClassWriter::addAttribute("cf_role", StdString("face_node_connectivity"), &face_nodes); |
---|
| 670 | SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its corner nodes."), &face_nodes); |
---|
| 671 | SuperClassWriter::addAttribute("start_index", 0, &face_nodes); |
---|
| 672 | dim0.clear(); |
---|
| 673 | dim0.push_back(dimFace); |
---|
| 674 | dim0.push_back(dimVertex); |
---|
| 675 | SuperClassWriter::addVariable(face_edges, NC_INT, dim0); |
---|
| 676 | SuperClassWriter::addAttribute("cf_role", StdString("face_edge_connectivity"), &face_edges); |
---|
| 677 | SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its edges."), &face_edges); |
---|
| 678 | SuperClassWriter::addAttribute("start_index", 0, &face_edges); |
---|
[929] | 679 | SuperClassWriter::addAttribute("_FillValue", 999999, &face_edges); |
---|
[924] | 680 | dim0.clear(); |
---|
| 681 | dim0.push_back(dimEdge); |
---|
| 682 | dim0.push_back(dimTwo); |
---|
| 683 | SuperClassWriter::addVariable(edge_faces, NC_INT, dim0); |
---|
| 684 | SuperClassWriter::addAttribute("cf_role", StdString("edge_face connectivity"), &edge_faces); |
---|
| 685 | SuperClassWriter::addAttribute("long_name", StdString("neighbor faces for edges"), &edge_faces); |
---|
| 686 | SuperClassWriter::addAttribute("start_index", 0, &edge_faces); |
---|
| 687 | SuperClassWriter::addAttribute("_FillValue", -999, &edge_faces); |
---|
| 688 | SuperClassWriter::addAttribute("comment", StdString("missing neighbor faces are indicated using _FillValue"), &edge_faces); |
---|
| 689 | dim0.clear(); |
---|
| 690 | dim0.push_back(dimFace); |
---|
| 691 | dim0.push_back(dimVertex); |
---|
| 692 | SuperClassWriter::addVariable(face_faces, NC_INT, dim0); |
---|
| 693 | SuperClassWriter::addAttribute("cf_role", StdString("face_face connectivity"), &face_faces); |
---|
| 694 | SuperClassWriter::addAttribute("long_name", StdString("Indicates which other faces neighbor each face"), &face_faces); |
---|
| 695 | SuperClassWriter::addAttribute("start_index", 0, &face_faces); |
---|
[929] | 696 | SuperClassWriter::addAttribute("_FillValue", 999999, &face_faces); |
---|
[924] | 697 | SuperClassWriter::addAttribute("flag_values", -1, &face_faces); |
---|
| 698 | SuperClassWriter::addAttribute("flag_meanings", StdString("out_of_mesh"), &face_faces); |
---|
[879] | 699 | } // domain->nvertex > 2 |
---|
[878] | 700 | |
---|
[879] | 701 | SuperClassWriter::definition_end(); |
---|
[878] | 702 | |
---|
[924] | 703 | std::vector<StdSize> startEdges(1) ; |
---|
| 704 | std::vector<StdSize> countEdges(1) ; |
---|
| 705 | std::vector<StdSize> startNodes(1) ; |
---|
| 706 | std::vector<StdSize> countNodes(1) ; |
---|
| 707 | std::vector<StdSize> startFaces(1) ; |
---|
| 708 | std::vector<StdSize> countFaces(1) ; |
---|
| 709 | std::vector<StdSize> startEdgeNodes(2) ; |
---|
| 710 | std::vector<StdSize> countEdgeNodes(2) ; |
---|
| 711 | std::vector<StdSize> startEdgeFaces(2) ; |
---|
| 712 | std::vector<StdSize> countEdgeFaces(2) ; |
---|
| 713 | std::vector<StdSize> startFaceConctv(2) ; |
---|
| 714 | std::vector<StdSize> countFaceConctv(2) ; |
---|
[902] | 715 | |
---|
[879] | 716 | if (!isWrittenDomain(domid)) |
---|
| 717 | { |
---|
| 718 | if (domain->nvertex == 1) |
---|
| 719 | { |
---|
[924] | 720 | if (domain->isEmpty()) |
---|
| 721 | { |
---|
| 722 | startNodes[0]=0 ; |
---|
| 723 | countNodes[0]=0 ; |
---|
| 724 | } |
---|
| 725 | else |
---|
| 726 | { |
---|
[1132] | 727 | startNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 728 | countNodes[0] = domain->zoom_ni ; |
---|
[924] | 729 | } |
---|
| 730 | |
---|
| 731 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 732 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
[879] | 733 | } |
---|
| 734 | else if (domain->nvertex == 2) |
---|
[924] | 735 | { |
---|
| 736 | if (domain->isEmpty()) |
---|
| 737 | { |
---|
| 738 | startEdges[0]=0 ; |
---|
| 739 | countEdges[0]=0 ; |
---|
| 740 | startNodes[0]=0 ; |
---|
| 741 | countNodes[0]=0 ; |
---|
| 742 | startEdgeNodes[0]=0; |
---|
| 743 | startEdgeNodes[1]=0; |
---|
| 744 | countEdgeNodes[0]=0; |
---|
| 745 | countEdgeNodes[1]=0; |
---|
| 746 | |
---|
| 747 | } |
---|
| 748 | else |
---|
| 749 | { |
---|
[1132] | 750 | startEdges[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 751 | countEdges[0] = domain->zoom_ni; |
---|
[924] | 752 | startNodes[0] = domain->mesh->node_start; |
---|
| 753 | countNodes[0] = domain->mesh->node_count; |
---|
[1132] | 754 | startEdgeNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
[924] | 755 | startEdgeNodes[1] = 0; |
---|
[1132] | 756 | countEdgeNodes[0] = domain->zoom_ni; |
---|
| 757 | countEdgeNodes[1] = 2; |
---|
[924] | 758 | } |
---|
| 759 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 760 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
| 761 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 762 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 763 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
| 764 | } |
---|
[879] | 765 | else |
---|
| 766 | { |
---|
[924] | 767 | if (domain->isEmpty()) |
---|
| 768 | { |
---|
| 769 | startFaces[0] = 0 ; |
---|
| 770 | countFaces[0] = 0 ; |
---|
| 771 | startNodes[0] = 0; |
---|
| 772 | countNodes[0] = 0; |
---|
| 773 | startEdges[0] = 0; |
---|
| 774 | countEdges[0] = 0; |
---|
| 775 | startEdgeFaces[0] = 0; |
---|
| 776 | startEdgeFaces[1] = 0; |
---|
| 777 | countEdgeFaces[0] = 0; |
---|
| 778 | countEdgeFaces[1] = 0; |
---|
| 779 | startFaceConctv[0] = 0; |
---|
| 780 | startFaceConctv[1] = 0; |
---|
| 781 | countFaceConctv[0] = 0; |
---|
| 782 | countFaceConctv[1] = 0; |
---|
| 783 | } |
---|
| 784 | else |
---|
| 785 | { |
---|
[1132] | 786 | startFaces[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 787 | countFaces[0] = domain->zoom_ni ; |
---|
[924] | 788 | startNodes[0] = domain->mesh->node_start; |
---|
| 789 | countNodes[0] = domain->mesh->node_count; |
---|
| 790 | startEdges[0] = domain->mesh->edge_start; |
---|
| 791 | countEdges[0] = domain->mesh->edge_count; |
---|
| 792 | startEdgeNodes[0] = domain->mesh->edge_start; |
---|
| 793 | startEdgeNodes[1] = 0; |
---|
| 794 | countEdgeNodes[0] = domain->mesh->edge_count; |
---|
| 795 | countEdgeNodes[1]= 2; |
---|
| 796 | startEdgeFaces[0] = domain->mesh->edge_start; |
---|
| 797 | startEdgeFaces[1]= 0; |
---|
| 798 | countEdgeFaces[0] = domain->mesh->edge_count; |
---|
| 799 | countEdgeFaces[1]= 2; |
---|
[1132] | 800 | startFaceConctv[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 801 | startFaceConctv[1] = 0; |
---|
| 802 | countFaceConctv[0] = domain->zoom_ni; |
---|
[924] | 803 | countFaceConctv[1] = domain->nvertex; |
---|
| 804 | } |
---|
| 805 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 806 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
| 807 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 808 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 809 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
| 810 | SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces); |
---|
| 811 | SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces); |
---|
| 812 | SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 813 | SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 814 | SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces); |
---|
| 815 | SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
[879] | 816 | } |
---|
| 817 | setWrittenDomain(domid); |
---|
| 818 | } // !isWrittenDomain |
---|
| 819 | else |
---|
| 820 | { |
---|
| 821 | if (domain->nvertex == 2) |
---|
| 822 | { |
---|
[1132] | 823 | startEdges[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 824 | countEdges[0] = domain->zoom_ni; |
---|
| 825 | startEdgeNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 826 | startEdgeNodes[1] = 0; |
---|
| 827 | countEdgeNodes[0] = domain->zoom_ni; |
---|
[924] | 828 | countEdgeNodes[1]= 2; |
---|
| 829 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 830 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 831 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
[879] | 832 | } |
---|
| 833 | if (domain->nvertex > 2) |
---|
| 834 | { |
---|
[924] | 835 | |
---|
[879] | 836 | if (!domain->mesh->edgesAreWritten) |
---|
| 837 | { |
---|
[924] | 838 | startEdges[0] = domain->mesh->edge_start; |
---|
| 839 | countEdges[0] = domain->mesh->edge_count; |
---|
| 840 | startEdgeNodes[0] = domain->mesh->edge_start; |
---|
| 841 | startEdgeNodes[1] = 0; |
---|
| 842 | countEdgeNodes[0] = domain->mesh->edge_count; |
---|
| 843 | countEdgeNodes[1]= 2; |
---|
| 844 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 845 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 846 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
[879] | 847 | } |
---|
[1132] | 848 | startFaces[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 849 | countFaces[0] = domain->zoom_ni; |
---|
[924] | 850 | startEdgeFaces[0] = domain->mesh->edge_start; |
---|
| 851 | startEdgeFaces[1]= 0; |
---|
| 852 | countEdgeFaces[0] = domain->mesh->edge_count; |
---|
| 853 | countEdgeFaces[1]= 2; |
---|
[1132] | 854 | startFaceConctv[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 855 | startFaceConctv[1] = 0; |
---|
| 856 | countFaceConctv[0] = domain->zoom_ni; |
---|
| 857 | countFaceConctv[1] = domain->nvertex; |
---|
[924] | 858 | SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces); |
---|
| 859 | SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces); |
---|
| 860 | SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 861 | SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 862 | SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces); |
---|
| 863 | SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
[879] | 864 | } |
---|
| 865 | }// isWrittenDomain |
---|
[878] | 866 | |
---|
[879] | 867 | SuperClassWriter::definition_start(); |
---|
[878] | 868 | |
---|
[879] | 869 | break; |
---|
| 870 | } // ONE_FILE |
---|
[878] | 871 | |
---|
[879] | 872 | case (MULTI_FILE) : |
---|
| 873 | { |
---|
| 874 | break; |
---|
| 875 | } |
---|
[878] | 876 | |
---|
[879] | 877 | default : |
---|
| 878 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 879 | << "[ type = " << SuperClass::type << "]" |
---|
| 880 | << " not implemented yet !"); |
---|
| 881 | } // switch |
---|
| 882 | } // try |
---|
[878] | 883 | |
---|
[879] | 884 | catch (CNetCdfException& e) |
---|
| 885 | { |
---|
| 886 | StdString msg("On writing the domain : "); |
---|
| 887 | msg.append(domid); msg.append("\n"); |
---|
| 888 | msg.append("In the context : "); |
---|
| 889 | msg.append(context->getId()); msg.append("\n"); |
---|
| 890 | msg.append(e.what()); |
---|
[924] | 891 | ERROR("CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)", << msg); |
---|
[879] | 892 | } |
---|
[878] | 893 | |
---|
[879] | 894 | domain->addRelFile(this->filename); |
---|
| 895 | } |
---|
[878] | 896 | |
---|
[879] | 897 | //-------------------------------------------------------------- |
---|
[878] | 898 | |
---|
[879] | 899 | void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain) |
---|
[449] | 900 | { |
---|
| 901 | CContext* context = CContext::getCurrent() ; |
---|
| 902 | CContextServer* server=context->server ; |
---|
[488] | 903 | |
---|
[449] | 904 | if (domain->IsWritten(this->filename)) return; |
---|
| 905 | domain->checkAttributes(); |
---|
[488] | 906 | |
---|
| 907 | if (domain->isEmpty()) |
---|
[449] | 908 | if (SuperClass::type==MULTI_FILE) return ; |
---|
| 909 | |
---|
| 910 | std::vector<StdString> dim0, dim1; |
---|
[772] | 911 | StdString domid = domain->getDomainOutputName(); |
---|
[705] | 912 | if (isWrittenDomain(domid)) return ; |
---|
[774] | 913 | else setWrittenDomain(domid); |
---|
[705] | 914 | |
---|
[449] | 915 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
---|
| 916 | |
---|
| 917 | StdString dimXid = StdString("cell").append(appendDomid); |
---|
| 918 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
---|
[488] | 919 | |
---|
[449] | 920 | string lonid,latid,bounds_lonid,bounds_latid ; |
---|
[611] | 921 | string areaId = "area" + appendDomid; |
---|
[449] | 922 | |
---|
[1158] | 923 | nc_type typePrec ; |
---|
| 924 | if (domain->prec.isEmpty()) typePrec = NC_FLOAT ; |
---|
| 925 | else if (domain->prec==4) typePrec = NC_FLOAT ; |
---|
| 926 | else if (domain->prec==8) typePrec = NC_DOUBLE ; |
---|
| 927 | |
---|
[1132] | 928 | int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex; |
---|
[1025] | 929 | |
---|
[1132] | 930 | CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer; |
---|
| 931 | int nbWritten = indexToWrite.numElements(); |
---|
| 932 | CArray<double,1> writtenLat, writtenLon; |
---|
| 933 | CArray<double,2> writtenBndsLat, writtenBndsLon; |
---|
| 934 | CArray<double,1> writtenArea; |
---|
| 935 | |
---|
| 936 | if (domain->hasLonLat) |
---|
| 937 | { |
---|
| 938 | writtenLat.resize(nbWritten); |
---|
| 939 | writtenLon.resize(nbWritten); |
---|
| 940 | for (int idx = 0; idx < nbWritten; ++idx) |
---|
| 941 | { |
---|
| 942 | writtenLat(idx) = domain->latvalue(indexToWrite(idx)); |
---|
| 943 | writtenLon(idx) = domain->lonvalue(indexToWrite(idx)); |
---|
| 944 | } |
---|
| 945 | |
---|
| 946 | |
---|
| 947 | if (domain->hasBounds) |
---|
| 948 | { |
---|
| 949 | int nvertex = domain->nvertex, idx; |
---|
| 950 | writtenBndsLat.resize(nvertex, nbWritten); |
---|
| 951 | writtenBndsLon.resize(nvertex, nbWritten); |
---|
| 952 | CArray<double,2>& boundslat = domain->bounds_latvalue; |
---|
| 953 | CArray<double,2>& boundslon = domain->bounds_lonvalue; |
---|
| 954 | for (idx = 0; idx < nbWritten; ++idx) |
---|
| 955 | for (int nv = 0; nv < nvertex; ++nv) |
---|
| 956 | { |
---|
| 957 | writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx))); |
---|
| 958 | writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx))); |
---|
| 959 | } |
---|
| 960 | } |
---|
| 961 | } |
---|
| 962 | |
---|
| 963 | if (domain->hasArea) |
---|
| 964 | { |
---|
| 965 | writtenArea.resize(nbWritten); |
---|
| 966 | for (int idx = 0; idx < nbWritten; ++idx) |
---|
| 967 | { |
---|
| 968 | writtenArea(idx) = domain->areavalue(indexToWrite(idx)); |
---|
| 969 | } |
---|
| 970 | } |
---|
| 971 | |
---|
[498] | 972 | try |
---|
[449] | 973 | { |
---|
[498] | 974 | switch (SuperClass::type) |
---|
| 975 | { |
---|
| 976 | case (MULTI_FILE) : |
---|
| 977 | { |
---|
| 978 | dim0.push_back(dimXid); |
---|
[1132] | 979 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni); |
---|
[488] | 980 | |
---|
[665] | 981 | lonid = StdString("lon").append(appendDomid); |
---|
| 982 | latid = StdString("lat").append(appendDomid); |
---|
[498] | 983 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 984 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
[665] | 985 | if (domain->hasLonLat) |
---|
| 986 | { |
---|
[1158] | 987 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
---|
| 988 | SuperClassWriter::addVariable(lonid, typePrec, dim0); |
---|
[665] | 989 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 990 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
| 991 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 992 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
| 993 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
---|
| 994 | } |
---|
[498] | 995 | dim0.clear(); |
---|
| 996 | if (domain->hasBounds) |
---|
| 997 | { |
---|
| 998 | dim0.push_back(dimXid); |
---|
| 999 | dim0.push_back(dimVertId); |
---|
[1158] | 1000 | SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0); |
---|
| 1001 | SuperClassWriter::addVariable(bounds_latid, typePrec, dim0); |
---|
[498] | 1002 | } |
---|
| 1003 | |
---|
| 1004 | dim0.clear(); |
---|
[449] | 1005 | dim0.push_back(dimXid); |
---|
[611] | 1006 | if (domain->hasArea) |
---|
| 1007 | { |
---|
[1158] | 1008 | SuperClassWriter::addVariable(areaId, typePrec, dim0); |
---|
[614] | 1009 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 1010 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 1011 | } |
---|
| 1012 | |
---|
[498] | 1013 | SuperClassWriter::definition_end(); |
---|
[449] | 1014 | |
---|
[665] | 1015 | if (domain->hasLonLat) |
---|
[498] | 1016 | { |
---|
[1132] | 1017 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0); |
---|
| 1018 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0); |
---|
[665] | 1019 | if (domain->hasBounds) |
---|
| 1020 | { |
---|
[1132] | 1021 | SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0); |
---|
| 1022 | SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0); |
---|
[665] | 1023 | } |
---|
[498] | 1024 | } |
---|
[611] | 1025 | |
---|
| 1026 | if (domain->hasArea) |
---|
[1132] | 1027 | SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0); |
---|
[611] | 1028 | |
---|
[498] | 1029 | SuperClassWriter::definition_start(); |
---|
| 1030 | break ; |
---|
| 1031 | } |
---|
[488] | 1032 | |
---|
[498] | 1033 | case (ONE_FILE) : |
---|
| 1034 | { |
---|
| 1035 | lonid = StdString("lon").append(appendDomid); |
---|
| 1036 | latid = StdString("lat").append(appendDomid); |
---|
| 1037 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 1038 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
| 1039 | dim0.push_back(dimXid); |
---|
[1132] | 1040 | SuperClassWriter::addDimension(dimXid, domain->ni_glo); |
---|
[665] | 1041 | if (domain->hasLonLat) |
---|
| 1042 | { |
---|
[1158] | 1043 | SuperClassWriter::addVariable(latid, typePrec, dim0); |
---|
| 1044 | SuperClassWriter::addVariable(lonid, typePrec, dim0); |
---|
[665] | 1045 | |
---|
| 1046 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 1047 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
| 1048 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 1049 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
[1025] | 1050 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, nvertex); |
---|
[665] | 1051 | } |
---|
[498] | 1052 | dim0.clear(); |
---|
[449] | 1053 | |
---|
[498] | 1054 | if (domain->hasBounds) |
---|
| 1055 | { |
---|
| 1056 | dim0.push_back(dimXid); |
---|
| 1057 | dim0.push_back(dimVertId); |
---|
[1158] | 1058 | SuperClassWriter::addVariable(bounds_lonid, typePrec, dim0); |
---|
| 1059 | SuperClassWriter::addVariable(bounds_latid, typePrec, dim0); |
---|
[498] | 1060 | } |
---|
[488] | 1061 | |
---|
[611] | 1062 | if (domain->hasArea) |
---|
| 1063 | { |
---|
| 1064 | dim0.clear(); |
---|
| 1065 | dim0.push_back(dimXid); |
---|
[1158] | 1066 | SuperClassWriter::addVariable(areaId, typePrec, dim0); |
---|
[614] | 1067 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 1068 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 1069 | } |
---|
| 1070 | |
---|
[498] | 1071 | SuperClassWriter::definition_end(); |
---|
[488] | 1072 | |
---|
[498] | 1073 | std::vector<StdSize> start(1), startBounds(2) ; |
---|
| 1074 | std::vector<StdSize> count(1), countBounds(2) ; |
---|
| 1075 | if (domain->isEmpty()) |
---|
| 1076 | { |
---|
| 1077 | start[0]=0 ; |
---|
| 1078 | count[0]=0 ; |
---|
| 1079 | startBounds[1]=0 ; |
---|
[1025] | 1080 | countBounds[1]=nvertex ; |
---|
[498] | 1081 | startBounds[0]=0 ; |
---|
| 1082 | countBounds[0]=0 ; |
---|
| 1083 | } |
---|
| 1084 | else |
---|
| 1085 | { |
---|
[1132] | 1086 | start[0]=domain->zoom_ibegin - domain->global_zoom_ibegin; |
---|
| 1087 | count[0]=domain->zoom_ni; |
---|
| 1088 | startBounds[0]=domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
[498] | 1089 | startBounds[1]=0 ; |
---|
[1132] | 1090 | countBounds[0]=domain->zoom_ni; |
---|
[1025] | 1091 | countBounds[1]=nvertex ; |
---|
[498] | 1092 | } |
---|
[665] | 1093 | |
---|
| 1094 | if (domain->hasLonLat) |
---|
[498] | 1095 | { |
---|
[1132] | 1096 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count); |
---|
| 1097 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count); |
---|
[665] | 1098 | if (domain->hasBounds) |
---|
| 1099 | { |
---|
[1132] | 1100 | SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0,&startBounds,&countBounds); |
---|
| 1101 | SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0,&startBounds,&countBounds); |
---|
[665] | 1102 | } |
---|
[498] | 1103 | } |
---|
[488] | 1104 | |
---|
[611] | 1105 | if (domain->hasArea) |
---|
[1132] | 1106 | SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count); |
---|
[488] | 1107 | |
---|
[498] | 1108 | SuperClassWriter::definition_start(); |
---|
[488] | 1109 | |
---|
[498] | 1110 | break; |
---|
| 1111 | } |
---|
| 1112 | default : |
---|
| 1113 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 1114 | << "[ type = " << SuperClass::type << "]" |
---|
| 1115 | << " not implemented yet !"); |
---|
| 1116 | } |
---|
[219] | 1117 | } |
---|
[498] | 1118 | catch (CNetCdfException& e) |
---|
| 1119 | { |
---|
| 1120 | StdString msg("On writing the domain : "); |
---|
| 1121 | msg.append(domid); msg.append("\n"); |
---|
| 1122 | msg.append("In the context : "); |
---|
| 1123 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1124 | msg.append(e.what()); |
---|
| 1125 | ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg); |
---|
| 1126 | } |
---|
[219] | 1127 | domain->addRelFile(this->filename); |
---|
| 1128 | } |
---|
| 1129 | //-------------------------------------------------------------- |
---|
| 1130 | |
---|
[347] | 1131 | void CNc4DataOutput::writeAxis_(CAxis* axis) |
---|
[219] | 1132 | { |
---|
[1030] | 1133 | if (axis->IsWritten(this->filename)) return; |
---|
| 1134 | axis->checkAttributes(); |
---|
[488] | 1135 | |
---|
[1129] | 1136 | axis->computeWrittenIndex(); |
---|
[1249] | 1137 | axis->computeWrittenCompressedIndex(comm_file); |
---|
[1129] | 1138 | |
---|
[1099] | 1139 | int zoom_size = (MULTI_FILE == SuperClass::type) ? axis->zoom_n |
---|
| 1140 | : axis->global_zoom_n; |
---|
| 1141 | |
---|
[1235] | 1142 | int zoom_count = axis->zoom_n; |
---|
| 1143 | int zoom_begin = axis->zoom_begin; |
---|
| 1144 | // int zoom_begin = (MULTI_FILE == SuperClass::type) ? axis->global_zoom_begin |
---|
| 1145 | // : axis->zoom_begin; |
---|
| 1146 | |
---|
[1099] | 1147 | if ((0 == axis->zoom_n) && (MULTI_FILE == SuperClass::type)) return; |
---|
| 1148 | |
---|
[1030] | 1149 | std::vector<StdString> dims; |
---|
| 1150 | StdString axisid = axis->getAxisOutputName(); |
---|
| 1151 | if (isWrittenAxis(axisid)) return ; |
---|
| 1152 | else setWrittenAxis(axisid); |
---|
[705] | 1153 | |
---|
[1158] | 1154 | nc_type typePrec ; |
---|
| 1155 | if (axis->prec.isEmpty()) typePrec = NC_FLOAT ; |
---|
[1235] | 1156 | else if (axis->prec==4) typePrec = NC_FLOAT ; |
---|
[1158] | 1157 | else if (axis->prec==8) typePrec = NC_DOUBLE ; |
---|
| 1158 | |
---|
| 1159 | if (!axis->label.isEmpty()) typePrec = NC_CHAR ; |
---|
| 1160 | string strId="str_len" ; |
---|
[1030] | 1161 | try |
---|
| 1162 | { |
---|
[1099] | 1163 | SuperClassWriter::addDimension(axisid, zoom_size); |
---|
[1158] | 1164 | if (!axis->label.isEmpty()) SuperClassWriter::addDimension(strId, stringArrayLen); |
---|
[1030] | 1165 | if (axis->hasValue) |
---|
[816] | 1166 | { |
---|
[1030] | 1167 | dims.push_back(axisid); |
---|
[1158] | 1168 | if (!axis->label.isEmpty()) dims.push_back(strId); |
---|
| 1169 | SuperClassWriter::addVariable(axisid, typePrec, dims); |
---|
[219] | 1170 | |
---|
[1030] | 1171 | if (!axis->name.isEmpty()) |
---|
| 1172 | SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid); |
---|
[219] | 1173 | |
---|
[1030] | 1174 | if (!axis->standard_name.isEmpty()) |
---|
| 1175 | SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid); |
---|
[540] | 1176 | |
---|
[1030] | 1177 | if (!axis->long_name.isEmpty()) |
---|
| 1178 | SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid); |
---|
[219] | 1179 | |
---|
[1030] | 1180 | if (!axis->unit.isEmpty()) |
---|
| 1181 | SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid); |
---|
[219] | 1182 | |
---|
[1030] | 1183 | if (!axis->positive.isEmpty()) |
---|
| 1184 | { |
---|
| 1185 | SuperClassWriter::addAttribute("axis", string("Z"), &axisid); |
---|
| 1186 | SuperClassWriter::addAttribute("positive", |
---|
| 1187 | (axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"), |
---|
| 1188 | &axisid); |
---|
| 1189 | } |
---|
[399] | 1190 | |
---|
[1266] | 1191 | if (!axis->formula.isEmpty()) |
---|
| 1192 | SuperClassWriter::addAttribute("formula", axis->formula.getValue(), &axisid); |
---|
| 1193 | |
---|
| 1194 | if (!axis->formula_term.isEmpty()) |
---|
| 1195 | SuperClassWriter::addAttribute("formula_term", axis->formula_term.getValue(), &axisid); |
---|
| 1196 | |
---|
[1030] | 1197 | StdString axisBoundsId = axisid + "_bounds"; |
---|
[1249] | 1198 | if (!axis->bounds.isEmpty() && axis->label.isEmpty()) |
---|
[1030] | 1199 | { |
---|
| 1200 | dims.push_back("axis_nbounds"); |
---|
[1158] | 1201 | SuperClassWriter::addVariable(axisBoundsId, typePrec, dims); |
---|
[1030] | 1202 | SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid); |
---|
[1288] | 1203 | |
---|
| 1204 | if (!axis->standard_name.isEmpty()) |
---|
| 1205 | SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisBoundsId); |
---|
| 1206 | |
---|
| 1207 | if (!axis->unit.isEmpty()) |
---|
| 1208 | SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisBoundsId); |
---|
| 1209 | |
---|
[1266] | 1210 | if (!axis->formula_bounds.isEmpty()) |
---|
[1288] | 1211 | SuperClassWriter::addAttribute("formula", axis->formula_bounds.getValue(), &axisBoundsId); |
---|
[1266] | 1212 | |
---|
| 1213 | if (!axis->formula_term_bounds.isEmpty()) |
---|
[1288] | 1214 | SuperClassWriter::addAttribute("formula_term", axis->formula_term_bounds.getValue(), &axisBoundsId); |
---|
[1030] | 1215 | } |
---|
[488] | 1216 | |
---|
[1266] | 1217 | |
---|
[1030] | 1218 | SuperClassWriter::definition_end(); |
---|
[816] | 1219 | |
---|
[1129] | 1220 | CArray<size_t, 1>& indexToWrite = axis->localIndexToWriteOnServer; |
---|
| 1221 | int nbWritten = indexToWrite.numElements(); |
---|
| 1222 | CArray<double,1> axis_value(indexToWrite.numElements()); |
---|
| 1223 | for (int i = 0; i < nbWritten; i++) axis_value(i) = axis->value(indexToWrite(i)); |
---|
| 1224 | CArray<double,2> axis_bounds; |
---|
[1235] | 1225 | CArray<string,1> axis_label; |
---|
| 1226 | if (!axis->label.isEmpty()) |
---|
| 1227 | { |
---|
| 1228 | axis_label.resize(indexToWrite.numElements()); |
---|
| 1229 | for (int i = 0; i < nbWritten; i++) axis_label(i) = axis->label(indexToWrite(i)); |
---|
| 1230 | } |
---|
[1129] | 1231 | |
---|
[1030] | 1232 | switch (SuperClass::type) |
---|
| 1233 | { |
---|
| 1234 | case MULTI_FILE: |
---|
[816] | 1235 | { |
---|
[1235] | 1236 | if (axis->label.isEmpty()) |
---|
| 1237 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0); |
---|
[633] | 1238 | |
---|
[1333] | 1239 | if (!axis->bounds.isEmpty() && axis->label.isEmpty()) |
---|
[1332] | 1240 | { |
---|
[1333] | 1241 | axis_bounds.resize(2, indexToWrite.numElements()); |
---|
| 1242 | for (int i = 0; i < nbWritten; ++i) |
---|
| 1243 | { |
---|
| 1244 | axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i))); |
---|
| 1245 | axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i))); |
---|
| 1246 | } |
---|
| 1247 | |
---|
| 1248 | SuperClassWriter::writeData(axis_bounds, axisBoundsId, isCollective, 0); |
---|
[1332] | 1249 | } |
---|
| 1250 | |
---|
[1158] | 1251 | // Need to check after |
---|
[1235] | 1252 | if (!axis->label.isEmpty()) |
---|
| 1253 | SuperClassWriter::writeData(axis_label, axisid, isCollective, 0); |
---|
[1158] | 1254 | |
---|
[1030] | 1255 | SuperClassWriter::definition_start(); |
---|
| 1256 | break; |
---|
| 1257 | } |
---|
| 1258 | case ONE_FILE: |
---|
| 1259 | { |
---|
| 1260 | std::vector<StdSize> start(1), startBounds(2) ; |
---|
| 1261 | std::vector<StdSize> count(1), countBounds(2) ; |
---|
[1099] | 1262 | start[0] = startBounds[0] = zoom_begin - axis->global_zoom_begin; |
---|
[1235] | 1263 | count[0] = countBounds[0] = zoom_count; // zoom_size |
---|
[1030] | 1264 | startBounds[1] = 0; |
---|
| 1265 | countBounds[1] = 2; |
---|
[633] | 1266 | |
---|
[1235] | 1267 | if (axis->label.isEmpty()) |
---|
| 1268 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count); |
---|
| 1269 | |
---|
| 1270 | if (!axis->bounds.isEmpty() && axis->label.isEmpty()) |
---|
[1129] | 1271 | { |
---|
| 1272 | axis_bounds.resize(2, indexToWrite.numElements()); |
---|
| 1273 | for (int i = 0; i < nbWritten; ++i) |
---|
| 1274 | { |
---|
| 1275 | axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i))); |
---|
| 1276 | axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i))); |
---|
| 1277 | } |
---|
[1332] | 1278 | SuperClassWriter::writeData(axis_bounds, axisBoundsId, isCollective, 0, &startBounds, &countBounds); |
---|
[1129] | 1279 | } |
---|
[609] | 1280 | |
---|
[1158] | 1281 | // Need to check after |
---|
[1235] | 1282 | if (!axis->label.isEmpty()) |
---|
| 1283 | { |
---|
| 1284 | std::vector<StdSize> startLabel(2), countLabel(2); |
---|
| 1285 | startLabel[0] = start[0]; startLabel[1] = 0; |
---|
| 1286 | countLabel[0] = count[0]; countLabel[1] = stringArrayLen; |
---|
| 1287 | SuperClassWriter::writeData(axis_label, axisid, isCollective, 0, &startLabel, &countLabel); |
---|
| 1288 | } |
---|
[1158] | 1289 | |
---|
[1030] | 1290 | SuperClassWriter::definition_start(); |
---|
[609] | 1291 | |
---|
[1030] | 1292 | break; |
---|
[816] | 1293 | } |
---|
[1030] | 1294 | default : |
---|
| 1295 | ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", |
---|
| 1296 | << "[ type = " << SuperClass::type << "]" |
---|
| 1297 | << " not implemented yet !"); |
---|
[609] | 1298 | } |
---|
| 1299 | } |
---|
[1030] | 1300 | } |
---|
| 1301 | catch (CNetCdfException& e) |
---|
| 1302 | { |
---|
| 1303 | StdString msg("On writing the axis : "); |
---|
| 1304 | msg.append(axisid); msg.append("\n"); |
---|
| 1305 | msg.append("In the context : "); |
---|
| 1306 | CContext* context = CContext::getCurrent() ; |
---|
| 1307 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1308 | msg.append(e.what()); |
---|
| 1309 | ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg); |
---|
| 1310 | } |
---|
[1158] | 1311 | axis->addRelFile(this->filename); |
---|
[391] | 1312 | } |
---|
[488] | 1313 | |
---|
[887] | 1314 | void CNc4DataOutput::writeScalar_(CScalar* scalar) |
---|
| 1315 | { |
---|
| 1316 | if (scalar->IsWritten(this->filename)) return; |
---|
| 1317 | scalar->checkAttributes(); |
---|
| 1318 | int scalarSize = 1; |
---|
| 1319 | |
---|
| 1320 | StdString scalaId = scalar->getScalarOutputName(); |
---|
| 1321 | if (isWrittenAxis(scalaId)) return ; |
---|
| 1322 | else setWrittenAxis(scalaId); |
---|
| 1323 | |
---|
[1158] | 1324 | nc_type typePrec ; |
---|
| 1325 | if (scalar->prec.isEmpty()) typePrec = NC_FLOAT ; |
---|
| 1326 | else if (scalar->prec==4) typePrec = NC_FLOAT ; |
---|
| 1327 | else if (scalar->prec==8) typePrec = NC_DOUBLE ; |
---|
| 1328 | |
---|
| 1329 | |
---|
[887] | 1330 | try |
---|
| 1331 | { |
---|
| 1332 | if (!scalar->value.isEmpty()) |
---|
| 1333 | { |
---|
| 1334 | // dims.push_back(scalaId); |
---|
| 1335 | std::vector<StdString> dims; |
---|
[1158] | 1336 | SuperClassWriter::addVariable(scalaId, typePrec, dims); |
---|
[887] | 1337 | |
---|
| 1338 | if (!scalar->name.isEmpty()) |
---|
| 1339 | SuperClassWriter::addAttribute("name", scalar->name.getValue(), &scalaId); |
---|
| 1340 | |
---|
| 1341 | if (!scalar->standard_name.isEmpty()) |
---|
| 1342 | SuperClassWriter::addAttribute("standard_name", scalar->standard_name.getValue(), &scalaId); |
---|
| 1343 | |
---|
| 1344 | if (!scalar->long_name.isEmpty()) |
---|
| 1345 | SuperClassWriter::addAttribute("long_name", scalar->long_name.getValue(), &scalaId); |
---|
| 1346 | |
---|
| 1347 | if (!scalar->unit.isEmpty()) |
---|
| 1348 | SuperClassWriter::addAttribute("units", scalar->unit.getValue(), &scalaId); |
---|
| 1349 | |
---|
| 1350 | SuperClassWriter::definition_end(); |
---|
| 1351 | |
---|
| 1352 | switch (SuperClass::type) |
---|
| 1353 | { |
---|
| 1354 | case MULTI_FILE: |
---|
| 1355 | { |
---|
| 1356 | CArray<double,1> scalarValue(scalarSize); |
---|
| 1357 | scalarValue(0) = scalar->value; |
---|
| 1358 | SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0); |
---|
| 1359 | SuperClassWriter::definition_start(); |
---|
| 1360 | |
---|
| 1361 | break; |
---|
| 1362 | } |
---|
| 1363 | case ONE_FILE: |
---|
| 1364 | { |
---|
| 1365 | CArray<double,1> scalarValue(scalarSize); |
---|
| 1366 | scalarValue(0) = scalar->value; |
---|
| 1367 | |
---|
| 1368 | std::vector<StdSize> start(1); |
---|
| 1369 | std::vector<StdSize> count(1); |
---|
| 1370 | start[0] = 0; |
---|
| 1371 | count[0] = 1; |
---|
| 1372 | SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0, &start, &count); |
---|
| 1373 | SuperClassWriter::definition_start(); |
---|
| 1374 | |
---|
| 1375 | break; |
---|
| 1376 | } |
---|
| 1377 | default : |
---|
| 1378 | ERROR("CNc4DataOutput::writeAxis_(CAxis* scalar)", |
---|
| 1379 | << "[ type = " << SuperClass::type << "]" |
---|
| 1380 | << " not implemented yet !"); |
---|
| 1381 | } |
---|
| 1382 | } |
---|
| 1383 | } |
---|
| 1384 | catch (CNetCdfException& e) |
---|
| 1385 | { |
---|
| 1386 | StdString msg("On writing the scalar : "); |
---|
| 1387 | msg.append(scalaId); msg.append("\n"); |
---|
| 1388 | msg.append("In the context : "); |
---|
| 1389 | CContext* context = CContext::getCurrent() ; |
---|
| 1390 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1391 | msg.append(e.what()); |
---|
| 1392 | ERROR("CNc4DataOutput::writeScalar_(CScalar* scalar)", << msg); |
---|
| 1393 | } |
---|
| 1394 | scalar->addRelFile(this->filename); |
---|
| 1395 | } |
---|
| 1396 | |
---|
[676] | 1397 | //-------------------------------------------------------------- |
---|
| 1398 | |
---|
| 1399 | void CNc4DataOutput::writeGridCompressed_(CGrid* grid) |
---|
| 1400 | { |
---|
| 1401 | if (grid->isScalarGrid() || grid->isWrittenCompressed(this->filename)) return; |
---|
| 1402 | |
---|
| 1403 | try |
---|
| 1404 | { |
---|
[887] | 1405 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[676] | 1406 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 1407 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
[887] | 1408 | std::vector<StdString> scalarList = grid->getScalarList(); |
---|
| 1409 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0; |
---|
[676] | 1410 | |
---|
| 1411 | std::vector<StdString> dims; |
---|
| 1412 | |
---|
| 1413 | if (grid->isCompressible()) |
---|
| 1414 | { |
---|
| 1415 | StdString varId = grid->getId() + "_points"; |
---|
| 1416 | |
---|
| 1417 | int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes(); |
---|
| 1418 | SuperClassWriter::addDimension(varId, nbIndexes); |
---|
| 1419 | |
---|
| 1420 | dims.push_back(varId); |
---|
| 1421 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
| 1422 | |
---|
| 1423 | StdOStringStream compress; |
---|
| 1424 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 1425 | { |
---|
[887] | 1426 | if (2 == axisDomainOrder(i)) |
---|
[676] | 1427 | { |
---|
| 1428 | CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]); |
---|
[772] | 1429 | StdString domId = domain->getDomainOutputName(); |
---|
[676] | 1430 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
| 1431 | |
---|
| 1432 | switch (domain->type) |
---|
| 1433 | { |
---|
| 1434 | case CDomain::type_attr::curvilinear: |
---|
| 1435 | compress << "y" << appendDomId << " x" << appendDomId; |
---|
| 1436 | break; |
---|
| 1437 | case CDomain::type_attr::rectilinear: |
---|
| 1438 | compress << "lat" << appendDomId << " lon" << appendDomId; |
---|
| 1439 | break; |
---|
| 1440 | case CDomain::type_attr::unstructured: |
---|
| 1441 | compress << "cell" << appendDomId; |
---|
| 1442 | break; |
---|
| 1443 | } |
---|
| 1444 | ++idxDomain; |
---|
| 1445 | } |
---|
[887] | 1446 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 1447 | { |
---|
| 1448 | CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]); |
---|
[772] | 1449 | compress << axis->getAxisOutputName(); |
---|
[676] | 1450 | ++idxAxis; |
---|
| 1451 | } |
---|
[887] | 1452 | else |
---|
| 1453 | { |
---|
| 1454 | CScalar* scalar = CScalar::get(scalarList[scalarList.size() - idxScalar - 1]); |
---|
| 1455 | compress << scalar->getScalarOutputName(); |
---|
| 1456 | ++idxScalar; |
---|
| 1457 | } |
---|
[676] | 1458 | |
---|
| 1459 | if (i != 0) compress << ' '; |
---|
| 1460 | } |
---|
[1144] | 1461 | SuperClassWriter::addAttribute("compress", compress.str(), &varId); |
---|
[676] | 1462 | |
---|
| 1463 | CArray<int, 1> indexes(grid->getNumberWrittenIndexes()); |
---|
[1143] | 1464 | indexes = grid->localIndexToWriteOnServer; |
---|
[676] | 1465 | |
---|
| 1466 | switch (SuperClass::type) |
---|
| 1467 | { |
---|
| 1468 | case (MULTI_FILE): |
---|
| 1469 | { |
---|
| 1470 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
| 1471 | break; |
---|
| 1472 | } |
---|
| 1473 | case (ONE_FILE): |
---|
| 1474 | { |
---|
| 1475 | if (grid->doGridHaveDataDistributed()) |
---|
| 1476 | grid->getDistributionServer()->computeGlobalIndex(indexes); |
---|
| 1477 | |
---|
| 1478 | std::vector<StdSize> start, count; |
---|
| 1479 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 1480 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 1481 | |
---|
| 1482 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
| 1483 | break; |
---|
| 1484 | } |
---|
| 1485 | } |
---|
| 1486 | } |
---|
| 1487 | else |
---|
| 1488 | { |
---|
| 1489 | for (int i = 0; i < numElement; ++i) |
---|
| 1490 | { |
---|
| 1491 | StdString varId, compress; |
---|
| 1492 | CArray<int, 1> indexes; |
---|
| 1493 | bool isDistributed; |
---|
| 1494 | StdSize nbIndexes, totalNbIndexes, offset; |
---|
| 1495 | int firstGlobalIndex; |
---|
| 1496 | |
---|
[887] | 1497 | if (2 == axisDomainOrder(i)) |
---|
[676] | 1498 | { |
---|
| 1499 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[774] | 1500 | StdString domId = domain->getDomainOutputName(); |
---|
| 1501 | |
---|
[676] | 1502 | if (!domain->isCompressible() |
---|
| 1503 | || domain->type == CDomain::type_attr::unstructured |
---|
[774] | 1504 | || domain->isWrittenCompressed(this->filename) |
---|
| 1505 | || isWrittenCompressedDomain(domId)) |
---|
[676] | 1506 | continue; |
---|
| 1507 | |
---|
| 1508 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
| 1509 | |
---|
| 1510 | varId = domId + "_points"; |
---|
| 1511 | switch (domain->type) |
---|
| 1512 | { |
---|
| 1513 | case CDomain::type_attr::curvilinear: |
---|
| 1514 | compress = "y" + appendDomId + " x" + appendDomId; |
---|
| 1515 | break; |
---|
| 1516 | case CDomain::type_attr::rectilinear: |
---|
| 1517 | compress = "lat" + appendDomId + " lon" + appendDomId; |
---|
| 1518 | break; |
---|
| 1519 | } |
---|
| 1520 | |
---|
[1249] | 1521 | // indexes.resize(domain->compressedIndexToWriteOnServer[comm_file].numElements()); |
---|
| 1522 | // indexes = domain->compressedIndexToWriteOnServer[com_file]; |
---|
| 1523 | indexes.resize(domain->getCompressedIndexToWriteOnServer(comm_file).numElements()); |
---|
| 1524 | indexes = domain->getCompressedIndexToWriteOnServer(comm_file); |
---|
[1143] | 1525 | |
---|
[676] | 1526 | isDistributed = domain->isDistributed(); |
---|
[1249] | 1527 | nbIndexes = domain->getNumberWrittenIndexes(comm_file); |
---|
| 1528 | totalNbIndexes = domain->getTotalNumberWrittenIndexes(comm_file); |
---|
| 1529 | offset = domain->getOffsetWrittenIndexes(comm_file); |
---|
[676] | 1530 | firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo; |
---|
| 1531 | |
---|
| 1532 | domain->addRelFileCompressed(this->filename); |
---|
[774] | 1533 | setWrittenCompressedDomain(domId); |
---|
[676] | 1534 | ++idxDomain; |
---|
| 1535 | } |
---|
[887] | 1536 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 1537 | { |
---|
| 1538 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
[774] | 1539 | StdString axisId = axis->getAxisOutputName(); |
---|
| 1540 | |
---|
| 1541 | if (!axis->isCompressible() |
---|
| 1542 | || axis->isWrittenCompressed(this->filename) |
---|
| 1543 | || isWrittenCompressedAxis(axisId)) |
---|
[676] | 1544 | continue; |
---|
| 1545 | |
---|
| 1546 | varId = axisId + "_points"; |
---|
| 1547 | compress = axisId; |
---|
| 1548 | |
---|
[1249] | 1549 | // indexes.resize(axis->compressedIndexToWriteOnServer.numElements()); |
---|
| 1550 | // indexes = axis->compressedIndexToWriteOnServer; |
---|
[1143] | 1551 | |
---|
[1249] | 1552 | indexes.resize(axis->getCompressedIndexToWriteOnServer(comm_file).numElements()); |
---|
| 1553 | indexes = axis->getCompressedIndexToWriteOnServer(comm_file); |
---|
| 1554 | |
---|
[676] | 1555 | isDistributed = axis->isDistributed(); |
---|
[1249] | 1556 | nbIndexes = axis->getNumberWrittenIndexes(comm_file); |
---|
| 1557 | totalNbIndexes = axis->getTotalNumberWrittenIndexes(comm_file); |
---|
| 1558 | offset = axis->getOffsetWrittenIndexes(comm_file); |
---|
[676] | 1559 | firstGlobalIndex = axis->begin; |
---|
| 1560 | |
---|
| 1561 | axis->addRelFileCompressed(this->filename); |
---|
[774] | 1562 | setWrittenCompressedAxis(axisId); |
---|
[676] | 1563 | ++idxAxis; |
---|
| 1564 | } |
---|
[887] | 1565 | else |
---|
| 1566 | { |
---|
| 1567 | } |
---|
[676] | 1568 | |
---|
| 1569 | if (!varId.empty()) |
---|
| 1570 | { |
---|
| 1571 | SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes); |
---|
| 1572 | |
---|
| 1573 | dims.clear(); |
---|
| 1574 | dims.push_back(varId); |
---|
| 1575 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
| 1576 | |
---|
| 1577 | SuperClassWriter::addAttribute("compress", compress, &varId); |
---|
| 1578 | |
---|
| 1579 | switch (SuperClass::type) |
---|
| 1580 | { |
---|
| 1581 | case (MULTI_FILE): |
---|
| 1582 | { |
---|
| 1583 | indexes -= firstGlobalIndex; |
---|
| 1584 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
| 1585 | break; |
---|
| 1586 | } |
---|
| 1587 | case (ONE_FILE): |
---|
| 1588 | { |
---|
| 1589 | std::vector<StdSize> start, count; |
---|
| 1590 | start.push_back(offset); |
---|
| 1591 | count.push_back(nbIndexes); |
---|
| 1592 | |
---|
| 1593 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
| 1594 | break; |
---|
| 1595 | } |
---|
| 1596 | } |
---|
| 1597 | } |
---|
[1144] | 1598 | } |
---|
[676] | 1599 | } |
---|
| 1600 | |
---|
| 1601 | grid->addRelFileCompressed(this->filename); |
---|
| 1602 | } |
---|
| 1603 | catch (CNetCdfException& e) |
---|
| 1604 | { |
---|
| 1605 | StdString msg("On writing compressed grid : "); |
---|
| 1606 | msg.append(grid->getId()); msg.append("\n"); |
---|
| 1607 | msg.append("In the context : "); |
---|
| 1608 | CContext* context = CContext::getCurrent(); |
---|
| 1609 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1610 | msg.append(e.what()); |
---|
| 1611 | ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg); |
---|
| 1612 | } |
---|
| 1613 | } |
---|
| 1614 | |
---|
| 1615 | //-------------------------------------------------------------- |
---|
| 1616 | |
---|
[391] | 1617 | void CNc4DataOutput::writeTimeDimension_(void) |
---|
| 1618 | { |
---|
[498] | 1619 | try |
---|
| 1620 | { |
---|
[802] | 1621 | SuperClassWriter::addDimension(getTimeCounterName()); |
---|
[498] | 1622 | } |
---|
| 1623 | catch (CNetCdfException& e) |
---|
| 1624 | { |
---|
[614] | 1625 | StdString msg("On writing time dimension : time_couter\n"); |
---|
[498] | 1626 | msg.append("In the context : "); |
---|
| 1627 | CContext* context = CContext::getCurrent() ; |
---|
| 1628 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1629 | msg.append(e.what()); |
---|
| 1630 | ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg); |
---|
| 1631 | } |
---|
[391] | 1632 | } |
---|
[676] | 1633 | |
---|
[219] | 1634 | //-------------------------------------------------------------- |
---|
| 1635 | |
---|
[347] | 1636 | void CNc4DataOutput::writeField_(CField* field) |
---|
[219] | 1637 | { |
---|
[1158] | 1638 | CContext* context = CContext::getCurrent() ; |
---|
| 1639 | CContextServer* server=context->server ; |
---|
[300] | 1640 | |
---|
[1158] | 1641 | std::vector<StdString> dims, coodinates; |
---|
| 1642 | CGrid* grid = field->grid; |
---|
| 1643 | if (!grid->doGridHaveDataToWrite()) |
---|
[567] | 1644 | if (SuperClass::type==MULTI_FILE) return ; |
---|
[488] | 1645 | |
---|
[1158] | 1646 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
| 1647 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0; |
---|
| 1648 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 1649 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 1650 | std::vector<StdString> scalarList = grid->getScalarList(); |
---|
[219] | 1651 | |
---|
[1158] | 1652 | StdString timeid = getTimeCounterName(); |
---|
| 1653 | StdString dimXid,dimYid; |
---|
| 1654 | std::deque<StdString> dimIdList, dimCoordList; |
---|
| 1655 | bool hasArea = false; |
---|
| 1656 | StdString cellMeasures = "area:"; |
---|
| 1657 | bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output; |
---|
[488] | 1658 | |
---|
[1158] | 1659 | for (int i = 0; i < numElement; ++i) |
---|
| 1660 | { |
---|
| 1661 | if (2 == axisDomainOrder(i)) |
---|
| 1662 | { |
---|
| 1663 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
| 1664 | StdString domId = domain->getDomainOutputName(); |
---|
| 1665 | StdString appendDomId = singleDomain ? "" : "_" + domId ; |
---|
[676] | 1666 | |
---|
[1158] | 1667 | if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured) |
---|
| 1668 | { |
---|
| 1669 | dimIdList.push_back(domId + "_points"); |
---|
| 1670 | field->setUseCompressedOutput(); |
---|
| 1671 | } |
---|
[676] | 1672 | |
---|
[1158] | 1673 | switch (domain->type) |
---|
[879] | 1674 | { |
---|
[1158] | 1675 | case CDomain::type_attr::curvilinear: |
---|
| 1676 | if (!compressedOutput || !domain->isCompressible()) |
---|
| 1677 | { |
---|
| 1678 | dimXid = StdString("x").append(appendDomId); |
---|
| 1679 | dimIdList.push_back(dimXid); |
---|
| 1680 | dimYid = StdString("y").append(appendDomId); |
---|
| 1681 | dimIdList.push_back(dimYid); |
---|
| 1682 | } |
---|
| 1683 | dimCoordList.push_back(StdString("nav_lon").append(appendDomId)); |
---|
| 1684 | dimCoordList.push_back(StdString("nav_lat").append(appendDomId)); |
---|
| 1685 | break ; |
---|
| 1686 | case CDomain::type_attr::rectilinear: |
---|
| 1687 | if (!compressedOutput || !domain->isCompressible()) |
---|
| 1688 | { |
---|
| 1689 | dimXid = StdString("lon").append(appendDomId); |
---|
| 1690 | dimIdList.push_back(dimXid); |
---|
| 1691 | dimYid = StdString("lat").append(appendDomId); |
---|
| 1692 | dimIdList.push_back(dimYid); |
---|
| 1693 | } |
---|
| 1694 | break ; |
---|
| 1695 | case CDomain::type_attr::unstructured: |
---|
| 1696 | { |
---|
| 1697 | if (SuperClassWriter::useCFConvention) |
---|
| 1698 | { |
---|
| 1699 | dimXid = StdString("cell").append(appendDomId); |
---|
| 1700 | dimIdList.push_back(dimXid); |
---|
| 1701 | dimCoordList.push_back(StdString("lon").append(appendDomId)); |
---|
| 1702 | dimCoordList.push_back(StdString("lat").append(appendDomId)); |
---|
| 1703 | } |
---|
| 1704 | else |
---|
| 1705 | { |
---|
| 1706 | StdString domainName = domain->name; |
---|
| 1707 | if (domain->nvertex == 1) |
---|
| 1708 | { |
---|
| 1709 | dimXid = "n" + domainName + "_node"; |
---|
| 1710 | dimIdList.push_back(dimXid); |
---|
| 1711 | dimCoordList.push_back(StdString(domainName + "_node_x")); |
---|
| 1712 | dimCoordList.push_back(StdString(domainName + "_node_y")); |
---|
| 1713 | } |
---|
| 1714 | else if (domain->nvertex == 2) |
---|
| 1715 | { |
---|
| 1716 | dimXid = "n" + domainName + "_edge"; |
---|
| 1717 | dimIdList.push_back(dimXid); |
---|
| 1718 | dimCoordList.push_back(StdString(domainName + "_edge_x")); |
---|
| 1719 | dimCoordList.push_back(StdString(domainName + "_edge_y")); |
---|
| 1720 | } |
---|
| 1721 | else |
---|
| 1722 | { |
---|
| 1723 | dimXid = "n" + domainName + "_face"; |
---|
| 1724 | dimIdList.push_back(dimXid); |
---|
| 1725 | dimCoordList.push_back(StdString(domainName + "_face_x")); |
---|
| 1726 | dimCoordList.push_back(StdString(domainName + "_face_y")); |
---|
| 1727 | } |
---|
| 1728 | } // ugrid convention |
---|
| 1729 | } // case unstructured domain |
---|
[879] | 1730 | } |
---|
[1158] | 1731 | |
---|
| 1732 | if (domain->hasArea) |
---|
[879] | 1733 | { |
---|
[1158] | 1734 | hasArea = true; |
---|
| 1735 | cellMeasures += " area" + appendDomId; |
---|
[879] | 1736 | } |
---|
[1158] | 1737 | ++idxDomain; |
---|
| 1738 | } |
---|
| 1739 | else if (1 == axisDomainOrder(i)) |
---|
| 1740 | { |
---|
| 1741 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
| 1742 | StdString axisId = axis->getAxisOutputName(); |
---|
| 1743 | |
---|
| 1744 | if (compressedOutput && axis->isCompressible()) |
---|
[879] | 1745 | { |
---|
[1158] | 1746 | dimIdList.push_back(axisId + "_points"); |
---|
| 1747 | field->setUseCompressedOutput(); |
---|
[879] | 1748 | } |
---|
[1158] | 1749 | else |
---|
| 1750 | dimIdList.push_back(axisId); |
---|
[878] | 1751 | |
---|
[1158] | 1752 | dimCoordList.push_back(axisId); |
---|
| 1753 | ++idxAxis; |
---|
| 1754 | } |
---|
| 1755 | else // scalar |
---|
| 1756 | { |
---|
[887] | 1757 | /* Do nothing here */ |
---|
[1158] | 1758 | } |
---|
| 1759 | } |
---|
[488] | 1760 | |
---|
[1158] | 1761 | StdString fieldid = field->getFieldOutputName(); |
---|
[219] | 1762 | |
---|
[1158] | 1763 | nc_type type ; |
---|
| 1764 | if (field->prec.isEmpty()) type = NC_FLOAT ; |
---|
| 1765 | else |
---|
| 1766 | { |
---|
| 1767 | if (field->prec==2) type = NC_SHORT ; |
---|
| 1768 | else if (field->prec==4) type = NC_FLOAT ; |
---|
| 1769 | else if (field->prec==8) type = NC_DOUBLE ; |
---|
| 1770 | } |
---|
[488] | 1771 | |
---|
[1158] | 1772 | bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once); |
---|
[488] | 1773 | |
---|
[1158] | 1774 | if (wtime) |
---|
| 1775 | { |
---|
| 1776 | if (field->hasTimeInstant && hasTimeInstant) coodinates.push_back(string("time_instant")); |
---|
| 1777 | else if (field->hasTimeCentered && hasTimeCentered) coodinates.push_back(string("time_centered")); |
---|
| 1778 | dims.push_back(timeid); |
---|
| 1779 | } |
---|
[488] | 1780 | |
---|
[1158] | 1781 | if (compressedOutput && grid->isCompressible()) |
---|
| 1782 | { |
---|
| 1783 | dims.push_back(grid->getId() + "_points"); |
---|
| 1784 | field->setUseCompressedOutput(); |
---|
| 1785 | } |
---|
| 1786 | else |
---|
| 1787 | { |
---|
| 1788 | while (!dimIdList.empty()) |
---|
| 1789 | { |
---|
| 1790 | dims.push_back(dimIdList.back()); |
---|
| 1791 | dimIdList.pop_back(); |
---|
| 1792 | } |
---|
| 1793 | } |
---|
[219] | 1794 | |
---|
[1158] | 1795 | while (!dimCoordList.empty()) |
---|
| 1796 | { |
---|
| 1797 | coodinates.push_back(dimCoordList.back()); |
---|
| 1798 | dimCoordList.pop_back(); |
---|
| 1799 | } |
---|
[219] | 1800 | |
---|
[1158] | 1801 | try |
---|
| 1802 | { |
---|
[498] | 1803 | SuperClassWriter::addVariable(fieldid, type, dims); |
---|
[488] | 1804 | |
---|
[498] | 1805 | if (!field->standard_name.isEmpty()) |
---|
| 1806 | SuperClassWriter::addAttribute |
---|
| 1807 | ("standard_name", field->standard_name.getValue(), &fieldid); |
---|
[219] | 1808 | |
---|
[498] | 1809 | if (!field->long_name.isEmpty()) |
---|
| 1810 | SuperClassWriter::addAttribute |
---|
| 1811 | ("long_name", field->long_name.getValue(), &fieldid); |
---|
[219] | 1812 | |
---|
[498] | 1813 | if (!field->unit.isEmpty()) |
---|
| 1814 | SuperClassWriter::addAttribute |
---|
| 1815 | ("units", field->unit.getValue(), &fieldid); |
---|
[463] | 1816 | |
---|
[1158] | 1817 | // Ugrid field attributes "mesh" and "location" |
---|
| 1818 | if (!SuperClassWriter::useCFConvention) |
---|
| 1819 | { |
---|
| 1820 | if (!domainList.empty()) |
---|
| 1821 | { |
---|
| 1822 | CDomain* domain = CDomain::get(domainList[0]); // Suppose that we have only domain |
---|
| 1823 | StdString mesh = domain->name; |
---|
| 1824 | SuperClassWriter::addAttribute("mesh", mesh, &fieldid); |
---|
| 1825 | StdString location; |
---|
| 1826 | if (domain->nvertex == 1) |
---|
| 1827 | location = "node"; |
---|
| 1828 | else if (domain->nvertex == 2) |
---|
| 1829 | location = "edge"; |
---|
| 1830 | else if (domain->nvertex > 2) |
---|
| 1831 | location = "face"; |
---|
| 1832 | SuperClassWriter::addAttribute("location", location, &fieldid); |
---|
| 1833 | } |
---|
| 1834 | |
---|
| 1835 | } |
---|
| 1836 | |
---|
| 1837 | if (!field->valid_min.isEmpty()) |
---|
[498] | 1838 | SuperClassWriter::addAttribute |
---|
| 1839 | ("valid_min", field->valid_min.getValue(), &fieldid); |
---|
[463] | 1840 | |
---|
[498] | 1841 | if (!field->valid_max.isEmpty()) |
---|
| 1842 | SuperClassWriter::addAttribute |
---|
| 1843 | ("valid_max", field->valid_max.getValue(), &fieldid); |
---|
[464] | 1844 | |
---|
[498] | 1845 | if (!field->scale_factor.isEmpty()) |
---|
| 1846 | SuperClassWriter::addAttribute |
---|
| 1847 | ("scale_factor", field->scale_factor.getValue(), &fieldid); |
---|
[464] | 1848 | |
---|
[498] | 1849 | if (!field->add_offset.isEmpty()) |
---|
| 1850 | SuperClassWriter::addAttribute |
---|
| 1851 | ("add_offset", field->add_offset.getValue(), &fieldid); |
---|
[488] | 1852 | |
---|
[498] | 1853 | SuperClassWriter::addAttribute |
---|
| 1854 | ("online_operation", field->operation.getValue(), &fieldid); |
---|
[472] | 1855 | |
---|
[498] | 1856 | // write child variables as attributes |
---|
[488] | 1857 | |
---|
| 1858 | |
---|
[1021] | 1859 | bool alreadyAddCellMethod = false; |
---|
| 1860 | StdString cellMethodsPrefix(""), cellMethodsSuffix(""); |
---|
| 1861 | if (!field->cell_methods.isEmpty()) |
---|
| 1862 | { |
---|
[1158] | 1863 | StdString cellMethodString = field->cell_methods; |
---|
| 1864 | if (field->cell_methods_mode.isEmpty() || |
---|
[1021] | 1865 | (CField::cell_methods_mode_attr::overwrite == field->cell_methods_mode)) |
---|
[1158] | 1866 | { |
---|
| 1867 | SuperClassWriter::addAttribute("cell_methods", cellMethodString, &fieldid); |
---|
| 1868 | alreadyAddCellMethod = true; |
---|
| 1869 | } |
---|
| 1870 | else |
---|
| 1871 | { |
---|
| 1872 | switch (field->cell_methods_mode) |
---|
| 1873 | { |
---|
| 1874 | case (CField::cell_methods_mode_attr::prefix): |
---|
| 1875 | cellMethodsPrefix = cellMethodString; |
---|
| 1876 | cellMethodsPrefix += " "; |
---|
| 1877 | break; |
---|
| 1878 | case (CField::cell_methods_mode_attr::suffix): |
---|
| 1879 | cellMethodsSuffix = " "; |
---|
| 1880 | cellMethodsSuffix += cellMethodString; |
---|
| 1881 | break; |
---|
| 1882 | case (CField::cell_methods_mode_attr::none): |
---|
| 1883 | break; |
---|
| 1884 | default: |
---|
| 1885 | break; |
---|
| 1886 | } |
---|
| 1887 | } |
---|
[1021] | 1888 | } |
---|
[488] | 1889 | |
---|
[1021] | 1890 | |
---|
[498] | 1891 | if (wtime) |
---|
| 1892 | { |
---|
[614] | 1893 | CDuration freqOp = field->freq_op.getValue(); |
---|
| 1894 | freqOp.solveTimeStep(*context->calendar); |
---|
| 1895 | StdString freqOpStr = freqOp.toStringUDUnits(); |
---|
[612] | 1896 | SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid); |
---|
[437] | 1897 | |
---|
[614] | 1898 | CDuration freqOut = field->getRelFile()->output_freq.getValue(); |
---|
| 1899 | freqOut.solveTimeStep(*context->calendar); |
---|
| 1900 | SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid); |
---|
[612] | 1901 | |
---|
[1021] | 1902 | StdString cellMethods(cellMethodsPrefix + "time: "); |
---|
[612] | 1903 | if (field->operation.getValue() == "instant") cellMethods += "point"; |
---|
| 1904 | else if (field->operation.getValue() == "average") cellMethods += "mean"; |
---|
| 1905 | else if (field->operation.getValue() == "accumulate") cellMethods += "sum"; |
---|
| 1906 | else cellMethods += field->operation; |
---|
[614] | 1907 | if (freqOp.resolve(*context->calendar) != freqOut.resolve(*context->calendar)) |
---|
| 1908 | cellMethods += " (interval: " + freqOpStr + ")"; |
---|
[1021] | 1909 | cellMethods += cellMethodsSuffix; |
---|
| 1910 | if (!alreadyAddCellMethod) |
---|
| 1911 | SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid); |
---|
[498] | 1912 | } |
---|
[488] | 1913 | |
---|
[611] | 1914 | if (hasArea) |
---|
| 1915 | SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid); |
---|
| 1916 | |
---|
[498] | 1917 | if (!field->default_value.isEmpty()) |
---|
| 1918 | { |
---|
| 1919 | double default_value = field->default_value.getValue(); |
---|
| 1920 | float fdefault_value = (float)default_value; |
---|
| 1921 | if (type == NC_DOUBLE) |
---|
| 1922 | SuperClassWriter::setDefaultValue(fieldid, &default_value); |
---|
| 1923 | else |
---|
| 1924 | SuperClassWriter::setDefaultValue(fieldid, &fdefault_value); |
---|
| 1925 | } |
---|
| 1926 | else |
---|
[517] | 1927 | SuperClassWriter::setDefaultValue(fieldid, (double*)NULL); |
---|
[219] | 1928 | |
---|
[606] | 1929 | if (field->compression_level.isEmpty()) |
---|
| 1930 | field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level; |
---|
| 1931 | SuperClassWriter::setCompressionLevel(fieldid, field->compression_level); |
---|
| 1932 | |
---|
[878] | 1933 | { // Ecriture des coordonnes |
---|
[488] | 1934 | |
---|
[498] | 1935 | StdString coordstr; //boost::algorithm::join(coodinates, " ") |
---|
| 1936 | std::vector<StdString>::iterator |
---|
| 1937 | itc = coodinates.begin(), endc = coodinates.end(); |
---|
[488] | 1938 | |
---|
[498] | 1939 | for (; itc!= endc; itc++) |
---|
| 1940 | { |
---|
| 1941 | StdString & coord = *itc; |
---|
| 1942 | if (itc+1 != endc) |
---|
| 1943 | coordstr.append(coord).append(" "); |
---|
| 1944 | else coordstr.append(coord); |
---|
| 1945 | } |
---|
[219] | 1946 | |
---|
[498] | 1947 | SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid); |
---|
[219] | 1948 | |
---|
[498] | 1949 | } |
---|
[1222] | 1950 | |
---|
| 1951 | vector<CVariable*> listVars = field->getAllVariables() ; |
---|
| 1952 | for (vector<CVariable*>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(*it, fieldid) ; |
---|
| 1953 | |
---|
[219] | 1954 | } |
---|
[498] | 1955 | catch (CNetCdfException& e) |
---|
| 1956 | { |
---|
| 1957 | StdString msg("On writing field : "); |
---|
| 1958 | msg.append(fieldid); msg.append("\n"); |
---|
| 1959 | msg.append("In the context : "); |
---|
| 1960 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1961 | msg.append(e.what()); |
---|
| 1962 | ERROR("CNc4DataOutput::writeField_(CField* field)", << msg); |
---|
| 1963 | } |
---|
[879] | 1964 | } // writeField_() |
---|
[219] | 1965 | |
---|
| 1966 | //-------------------------------------------------------------- |
---|
| 1967 | |
---|
[347] | 1968 | void CNc4DataOutput::writeFile_ (CFile* file) |
---|
[219] | 1969 | { |
---|
[773] | 1970 | StdString filename = file->getFileOutputName(); |
---|
[219] | 1971 | StdString description = (!file->description.isEmpty()) |
---|
| 1972 | ? file->description.getValue() |
---|
[335] | 1973 | : StdString("Created by xios"); |
---|
[609] | 1974 | |
---|
| 1975 | singleDomain = (file->nbDomains == 1); |
---|
| 1976 | |
---|
[1158] | 1977 | StdString conv_str ; |
---|
| 1978 | if (file->convention_str.isEmpty()) |
---|
| 1979 | { |
---|
| 1980 | if (SuperClassWriter::useCFConvention) conv_str="CF-1.6" ; |
---|
| 1981 | else conv_str="UGRID" ; |
---|
| 1982 | } |
---|
| 1983 | else conv_str=file->convention_str ; |
---|
| 1984 | |
---|
[498] | 1985 | try |
---|
| 1986 | { |
---|
[1309] | 1987 | if (!appendMode) this->writeFileAttributes(filename, description, |
---|
| 1988 | conv_str, |
---|
| 1989 | StdString("An IPSL model"), |
---|
| 1990 | this->getTimeStamp()); |
---|
[609] | 1991 | |
---|
[701] | 1992 | if (!appendMode) |
---|
| 1993 | SuperClassWriter::addDimension("axis_nbounds", 2); |
---|
[498] | 1994 | } |
---|
| 1995 | catch (CNetCdfException& e) |
---|
| 1996 | { |
---|
| 1997 | StdString msg("On writing file : "); |
---|
| 1998 | msg.append(filename); msg.append("\n"); |
---|
| 1999 | msg.append("In the context : "); |
---|
| 2000 | CContext* context = CContext::getCurrent() ; |
---|
| 2001 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2002 | msg.append(e.what()); |
---|
| 2003 | ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg); |
---|
| 2004 | } |
---|
[219] | 2005 | } |
---|
[488] | 2006 | |
---|
[472] | 2007 | void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId) |
---|
| 2008 | { |
---|
[773] | 2009 | StdString name = var->getVariableOutputName(); |
---|
[488] | 2010 | |
---|
[498] | 2011 | try |
---|
| 2012 | { |
---|
[527] | 2013 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
| 2014 | addAttribute(name, var->getData<int>(), &fieldId); |
---|
| 2015 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
| 2016 | addAttribute(name, var->getData<short int>(), &fieldId); |
---|
| 2017 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
| 2018 | addAttribute(name, var->getData<float>(), &fieldId); |
---|
| 2019 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
| 2020 | addAttribute(name, var->getData<double>(), &fieldId); |
---|
| 2021 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
| 2022 | addAttribute(name, var->getData<string>(), &fieldId); |
---|
| 2023 | else |
---|
| 2024 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", |
---|
| 2025 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
[498] | 2026 | } |
---|
| 2027 | catch (CNetCdfException& e) |
---|
| 2028 | { |
---|
| 2029 | StdString msg("On writing attributes of variable with name : "); |
---|
| 2030 | msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n"); |
---|
| 2031 | msg.append("In the context : "); |
---|
| 2032 | CContext* context = CContext::getCurrent() ; |
---|
| 2033 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2034 | msg.append(e.what()); |
---|
| 2035 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg); |
---|
| 2036 | } |
---|
[472] | 2037 | } |
---|
[488] | 2038 | |
---|
[472] | 2039 | void CNc4DataOutput::writeAttribute_ (CVariable* var) |
---|
| 2040 | { |
---|
[773] | 2041 | StdString name = var->getVariableOutputName(); |
---|
| 2042 | |
---|
[498] | 2043 | try |
---|
| 2044 | { |
---|
[527] | 2045 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
| 2046 | addAttribute(name, var->getData<int>()); |
---|
| 2047 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
| 2048 | addAttribute(name, var->getData<short int>()); |
---|
| 2049 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
| 2050 | addAttribute(name, var->getData<float>()); |
---|
| 2051 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
| 2052 | addAttribute(name, var->getData<double>()); |
---|
| 2053 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
| 2054 | addAttribute(name, var->getData<string>()); |
---|
| 2055 | else |
---|
| 2056 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", |
---|
| 2057 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
[498] | 2058 | } |
---|
| 2059 | catch (CNetCdfException& e) |
---|
| 2060 | { |
---|
| 2061 | StdString msg("On writing attributes of variable with name : "); |
---|
| 2062 | msg.append(name); msg.append("\n"); |
---|
| 2063 | msg.append("In the context : "); |
---|
| 2064 | CContext* context = CContext::getCurrent() ; |
---|
| 2065 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2066 | msg.append(e.what()); |
---|
| 2067 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg); |
---|
| 2068 | } |
---|
[488] | 2069 | } |
---|
| 2070 | |
---|
[321] | 2071 | void CNc4DataOutput::syncFile_ (void) |
---|
| 2072 | { |
---|
[498] | 2073 | try |
---|
| 2074 | { |
---|
| 2075 | SuperClassWriter::sync() ; |
---|
| 2076 | } |
---|
| 2077 | catch (CNetCdfException& e) |
---|
| 2078 | { |
---|
| 2079 | StdString msg("On synchronizing the write among processes"); |
---|
| 2080 | msg.append("In the context : "); |
---|
| 2081 | CContext* context = CContext::getCurrent() ; |
---|
| 2082 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2083 | msg.append(e.what()); |
---|
| 2084 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
| 2085 | } |
---|
[321] | 2086 | } |
---|
[219] | 2087 | |
---|
[286] | 2088 | void CNc4DataOutput::closeFile_ (void) |
---|
| 2089 | { |
---|
[498] | 2090 | try |
---|
| 2091 | { |
---|
| 2092 | SuperClassWriter::close() ; |
---|
| 2093 | } |
---|
| 2094 | catch (CNetCdfException& e) |
---|
| 2095 | { |
---|
| 2096 | StdString msg("On closing file"); |
---|
| 2097 | msg.append("In the context : "); |
---|
| 2098 | CContext* context = CContext::getCurrent() ; |
---|
| 2099 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2100 | msg.append(e.what()); |
---|
| 2101 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
| 2102 | } |
---|
| 2103 | |
---|
[286] | 2104 | } |
---|
| 2105 | |
---|
[219] | 2106 | //--------------------------------------------------------------- |
---|
| 2107 | |
---|
| 2108 | StdString CNc4DataOutput::getTimeStamp(void) const |
---|
| 2109 | { |
---|
| 2110 | const int buffer_size = 100; |
---|
| 2111 | time_t rawtime; |
---|
| 2112 | struct tm * timeinfo = NULL; |
---|
| 2113 | char buffer [buffer_size]; |
---|
[1158] | 2114 | StdString formatStr; |
---|
| 2115 | if (file->time_stamp_format.isEmpty()) formatStr="%Y-%b-%d %H:%M:%S %Z" ; |
---|
| 2116 | else formatStr=file->time_stamp_format; |
---|
[219] | 2117 | |
---|
[1158] | 2118 | // time ( &rawtime ); |
---|
| 2119 | // timeinfo = localtime ( &rawtime ); |
---|
[219] | 2120 | time ( &rawtime ); |
---|
[1158] | 2121 | timeinfo = gmtime ( &rawtime ); |
---|
| 2122 | strftime (buffer, buffer_size, formatStr.c_str(), timeinfo); |
---|
[219] | 2123 | |
---|
| 2124 | return (StdString(buffer)); |
---|
| 2125 | } |
---|
[488] | 2126 | |
---|
[219] | 2127 | //--------------------------------------------------------------- |
---|
[488] | 2128 | |
---|
[347] | 2129 | void CNc4DataOutput::writeFieldData_ (CField* field) |
---|
[219] | 2130 | { |
---|
[707] | 2131 | CContext* context = CContext::getCurrent(); |
---|
| 2132 | CContextServer* server = context->server; |
---|
| 2133 | CGrid* grid = field->grid; |
---|
[300] | 2134 | |
---|
[1158] | 2135 | if (field->getNStep()<1) |
---|
| 2136 | { |
---|
| 2137 | return; |
---|
| 2138 | } |
---|
[952] | 2139 | |
---|
[707] | 2140 | if (!grid->doGridHaveDataToWrite()) |
---|
[1158] | 2141 | if (SuperClass::type == MULTI_FILE || !isCollective) |
---|
| 2142 | { |
---|
| 2143 | return; |
---|
| 2144 | } |
---|
[488] | 2145 | |
---|
[770] | 2146 | StdString fieldid = field->getFieldOutputName(); |
---|
[286] | 2147 | |
---|
[707] | 2148 | StdOStringStream oss; |
---|
| 2149 | string timeAxisId; |
---|
[1158] | 2150 | if (field->hasTimeInstant) timeAxisId = "time_instant"; |
---|
| 2151 | else if (field->hasTimeCentered) timeAxisId = "time_centered"; |
---|
[488] | 2152 | |
---|
[802] | 2153 | StdString timeBoundId = getTimeCounterName() + "_bounds"; |
---|
[449] | 2154 | |
---|
[707] | 2155 | StdString timeAxisBoundId; |
---|
[1158] | 2156 | if (field->hasTimeInstant) timeAxisBoundId = "time_instant_bounds"; |
---|
| 2157 | else if (field->hasTimeCentered) timeAxisBoundId = "time_centered_bounds"; |
---|
[488] | 2158 | |
---|
[707] | 2159 | if (!field->wasWritten()) |
---|
| 2160 | { |
---|
[1158] | 2161 | if (appendMode && field->file->record_offset.isEmpty() && |
---|
| 2162 | field->getOperationTimeType() != func::CFunctor::once) |
---|
[707] | 2163 | { |
---|
[1158] | 2164 | double factorUnit; |
---|
| 2165 | if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days) |
---|
| 2166 | factorUnit=context->getCalendar()->getDayLengthInSeconds() ; |
---|
| 2167 | else factorUnit=1 ; |
---|
| 2168 | field->resetNStep(getRecordFromTime(field->last_Write_srv,factorUnit) + 1); |
---|
[707] | 2169 | } |
---|
[488] | 2170 | |
---|
[707] | 2171 | field->setWritten(); |
---|
| 2172 | } |
---|
[488] | 2173 | |
---|
| 2174 | |
---|
[707] | 2175 | CArray<double,1> time_data(1); |
---|
| 2176 | CArray<double,1> time_data_bound(2); |
---|
| 2177 | CArray<double,1> time_counter(1); |
---|
| 2178 | CArray<double,1> time_counter_bound(2); |
---|
| 2179 | |
---|
| 2180 | bool wtime = (field->getOperationTimeType() != func::CFunctor::once); |
---|
[1158] | 2181 | bool wtimeCounter =false ; |
---|
| 2182 | bool wtimeData =false ; |
---|
| 2183 | |
---|
[707] | 2184 | |
---|
[444] | 2185 | if (wtime) |
---|
| 2186 | { |
---|
[692] | 2187 | Time lastWrite = field->last_Write_srv; |
---|
| 2188 | Time lastLastWrite = field->lastlast_Write_srv; |
---|
| 2189 | |
---|
[1158] | 2190 | |
---|
| 2191 | if (field->hasTimeInstant) |
---|
| 2192 | { |
---|
| 2193 | time_data(0) = time_data_bound(1) = lastWrite; |
---|
[692] | 2194 | time_data_bound(0) = time_data_bound(1) = lastWrite; |
---|
[1158] | 2195 | if (timeCounterType==instant) |
---|
| 2196 | { |
---|
| 2197 | time_counter(0) = time_data(0); |
---|
| 2198 | time_counter_bound(0) = time_data_bound(0); |
---|
| 2199 | time_counter_bound(1) = time_data_bound(1); |
---|
| 2200 | wtimeCounter=true ; |
---|
| 2201 | } |
---|
| 2202 | if (hasTimeInstant) wtimeData=true ; |
---|
| 2203 | } |
---|
| 2204 | else if (field->hasTimeCentered) |
---|
[488] | 2205 | { |
---|
[1158] | 2206 | time_data(0) = (lastWrite + lastLastWrite) / 2; |
---|
[692] | 2207 | time_data_bound(0) = lastLastWrite; |
---|
| 2208 | time_data_bound(1) = lastWrite; |
---|
[1158] | 2209 | if (timeCounterType==centered) |
---|
| 2210 | { |
---|
| 2211 | time_counter(0) = time_data(0) ; |
---|
| 2212 | time_counter_bound(0) = time_data_bound(0) ; |
---|
| 2213 | time_counter_bound(1) = time_data_bound(1) ; |
---|
| 2214 | wtimeCounter=true ; |
---|
| 2215 | } |
---|
| 2216 | if (hasTimeCentered) wtimeData=true ; |
---|
[488] | 2217 | } |
---|
| 2218 | |
---|
[1158] | 2219 | if (timeCounterType==record) |
---|
| 2220 | { |
---|
[692] | 2221 | time_counter(0) = field->getNStep() - 1; |
---|
[1158] | 2222 | time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1; |
---|
| 2223 | wtimeCounter=true ; |
---|
| 2224 | } |
---|
[692] | 2225 | |
---|
[1158] | 2226 | if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days) |
---|
[692] | 2227 | { |
---|
[1158] | 2228 | double secByDay=context->getCalendar()->getDayLengthInSeconds() ; |
---|
| 2229 | time_data/=secByDay; |
---|
| 2230 | time_data_bound/=secByDay; |
---|
| 2231 | time_counter/=secByDay; |
---|
| 2232 | time_counter_bound/=secByDay; |
---|
[692] | 2233 | } |
---|
| 2234 | } |
---|
| 2235 | |
---|
[707] | 2236 | bool isRoot = (server->intraCommRank == 0); |
---|
[488] | 2237 | |
---|
[464] | 2238 | if (!field->scale_factor.isEmpty() || !field->add_offset.isEmpty()) |
---|
| 2239 | { |
---|
[707] | 2240 | double scaleFactor = 1.0; |
---|
| 2241 | double addOffset = 0.0; |
---|
| 2242 | if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor; |
---|
| 2243 | if (!field->add_offset.isEmpty()) addOffset = field->add_offset; |
---|
| 2244 | field->scaleFactorAddOffset(scaleFactor, addOffset); |
---|
[464] | 2245 | } |
---|
[488] | 2246 | |
---|
[498] | 2247 | try |
---|
[219] | 2248 | { |
---|
[676] | 2249 | size_t writtenSize; |
---|
| 2250 | if (field->getUseCompressedOutput()) |
---|
| 2251 | writtenSize = grid->getNumberWrittenIndexes(); |
---|
| 2252 | else |
---|
| 2253 | writtenSize = grid->getWrittenDataSize(); |
---|
| 2254 | |
---|
| 2255 | CArray<double,1> fieldData(writtenSize); |
---|
[567] | 2256 | if (!field->default_value.isEmpty()) fieldData = field->default_value; |
---|
[676] | 2257 | |
---|
| 2258 | if (field->getUseCompressedOutput()) |
---|
| 2259 | field->outputCompressedField(fieldData); |
---|
| 2260 | else |
---|
| 2261 | field->outputField(fieldData); |
---|
| 2262 | |
---|
[707] | 2263 | if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData); |
---|
[567] | 2264 | |
---|
| 2265 | switch (SuperClass::type) |
---|
[498] | 2266 | { |
---|
[567] | 2267 | case (MULTI_FILE) : |
---|
| 2268 | { |
---|
[1158] | 2269 | CTimer::get("Files : writing data").resume(); |
---|
[692] | 2270 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1); |
---|
[1158] | 2271 | CTimer::get("Files : writing data").suspend(); |
---|
[567] | 2272 | if (wtime) |
---|
| 2273 | { |
---|
[1158] | 2274 | CTimer::get("Files : writing time axis").resume(); |
---|
| 2275 | if ( wtimeData) |
---|
[692] | 2276 | { |
---|
[1158] | 2277 | // SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1); |
---|
| 2278 | // SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1); |
---|
| 2279 | SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 2280 | SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 2281 | } |
---|
| 2282 | if (wtimeCounter) |
---|
| 2283 | { |
---|
| 2284 | // SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1); |
---|
| 2285 | // if (timeCounterType!=record) SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1); |
---|
| 2286 | SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot); |
---|
| 2287 | if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
[692] | 2288 | } |
---|
[1158] | 2289 | CTimer::get("Files : writing time axis").suspend(); |
---|
[567] | 2290 | } |
---|
[707] | 2291 | break; |
---|
[567] | 2292 | } |
---|
| 2293 | case (ONE_FILE) : |
---|
| 2294 | { |
---|
[676] | 2295 | const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal(); |
---|
| 2296 | const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer(); |
---|
| 2297 | const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer(); |
---|
[464] | 2298 | |
---|
[676] | 2299 | std::vector<StdSize> start, count; |
---|
[464] | 2300 | |
---|
[676] | 2301 | if (field->getUseCompressedOutput()) |
---|
| 2302 | { |
---|
| 2303 | if (grid->isCompressible()) |
---|
| 2304 | { |
---|
| 2305 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 2306 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 2307 | } |
---|
| 2308 | else |
---|
| 2309 | { |
---|
[887] | 2310 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[676] | 2311 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 2312 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 2313 | int numElement = axisDomainOrder.numElements(); |
---|
| 2314 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
| 2315 | int idx = nZoomBeginGlobal.size() - 1; |
---|
[464] | 2316 | |
---|
[676] | 2317 | start.reserve(nZoomBeginGlobal.size()); |
---|
| 2318 | count.reserve(nZoomBeginGlobal.size()); |
---|
| 2319 | |
---|
| 2320 | |
---|
| 2321 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 2322 | { |
---|
[887] | 2323 | if (2 == axisDomainOrder(i)) |
---|
[676] | 2324 | { |
---|
| 2325 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
| 2326 | |
---|
| 2327 | if (domain->isCompressible()) |
---|
| 2328 | { |
---|
[1249] | 2329 | start.push_back(domain->getOffsetWrittenIndexes(comm_file)); |
---|
| 2330 | count.push_back(domain->getNumberWrittenIndexes(comm_file)); |
---|
[710] | 2331 | idx -= 2; |
---|
[676] | 2332 | } |
---|
| 2333 | else |
---|
| 2334 | { |
---|
[710] | 2335 | if ((domain->type) != CDomain::type_attr::unstructured) |
---|
| 2336 | { |
---|
| 2337 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2338 | count.push_back(nZoomSizeServer[idx]); |
---|
| 2339 | } |
---|
| 2340 | --idx; |
---|
[676] | 2341 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2342 | count.push_back(nZoomSizeServer[idx]); |
---|
[710] | 2343 | --idx; |
---|
[676] | 2344 | } |
---|
| 2345 | --idxDomain; |
---|
| 2346 | } |
---|
[887] | 2347 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 2348 | { |
---|
| 2349 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
| 2350 | |
---|
| 2351 | if (axis->isCompressible()) |
---|
| 2352 | { |
---|
[1249] | 2353 | start.push_back(axis->getOffsetWrittenIndexes(comm_file)); |
---|
| 2354 | count.push_back(axis->getNumberWrittenIndexes(comm_file)); |
---|
[676] | 2355 | } |
---|
| 2356 | else |
---|
| 2357 | { |
---|
| 2358 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2359 | count.push_back(nZoomSizeServer[idx]); |
---|
| 2360 | } |
---|
| 2361 | |
---|
| 2362 | --idxAxis; |
---|
| 2363 | --idx; |
---|
| 2364 | } |
---|
| 2365 | } |
---|
[1158] | 2366 | } |
---|
[676] | 2367 | } |
---|
| 2368 | else |
---|
[498] | 2369 | { |
---|
[887] | 2370 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[705] | 2371 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 2372 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 2373 | int numElement = axisDomainOrder.numElements(); |
---|
| 2374 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
[1025] | 2375 | int idx = domainList.size() * 2 + axisList.size() - 1;// nZoomBeginGlobal.size() - 1; |
---|
[705] | 2376 | |
---|
| 2377 | start.reserve(nZoomBeginGlobal.size()); |
---|
| 2378 | count.reserve(nZoomBeginGlobal.size()); |
---|
| 2379 | |
---|
| 2380 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 2381 | { |
---|
[887] | 2382 | if (2 == axisDomainOrder(i)) |
---|
[705] | 2383 | { |
---|
| 2384 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[710] | 2385 | if ((domain->type) != CDomain::type_attr::unstructured) |
---|
[705] | 2386 | { |
---|
[1099] | 2387 | start.push_back(domain->zoom_jbegin - domain->global_zoom_jbegin); |
---|
| 2388 | count.push_back(domain->zoom_nj); |
---|
[705] | 2389 | } |
---|
| 2390 | --idx ; |
---|
[1143] | 2391 | |
---|
[1099] | 2392 | start.push_back(domain->zoom_ibegin - domain->global_zoom_ibegin); |
---|
| 2393 | count.push_back(domain->zoom_ni); |
---|
[705] | 2394 | --idx ; |
---|
| 2395 | --idxDomain; |
---|
| 2396 | } |
---|
[887] | 2397 | else if (1 == axisDomainOrder(i)) |
---|
[705] | 2398 | { |
---|
[1143] | 2399 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
[1099] | 2400 | start.push_back(axis->zoom_begin - axis->global_zoom_begin); |
---|
| 2401 | count.push_back(axis->zoom_n); |
---|
[705] | 2402 | --idx; |
---|
[1025] | 2403 | --idxAxis; |
---|
[887] | 2404 | } |
---|
| 2405 | else |
---|
| 2406 | { |
---|
| 2407 | if (1 == axisDomainOrder.numElements()) |
---|
| 2408 | { |
---|
| 2409 | start.push_back(0); |
---|
| 2410 | count.push_back(1); |
---|
| 2411 | } |
---|
| 2412 | --idx; |
---|
| 2413 | } |
---|
[705] | 2414 | } |
---|
[498] | 2415 | } |
---|
[488] | 2416 | |
---|
[1158] | 2417 | |
---|
| 2418 | CTimer::get("Files : writing data").resume(); |
---|
[676] | 2419 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count); |
---|
[1158] | 2420 | CTimer::get("Files : writing data").suspend(); |
---|
| 2421 | |
---|
| 2422 | if (wtime) |
---|
| 2423 | { |
---|
| 2424 | CTimer::get("Files : writing time axis").resume(); |
---|
| 2425 | if ( wtimeData) |
---|
[692] | 2426 | { |
---|
[1158] | 2427 | // SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1); |
---|
| 2428 | // SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1); |
---|
| 2429 | SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 2430 | SuperClassWriter::writeTimeAxisDataBounds(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
[692] | 2431 | } |
---|
[1158] | 2432 | if (wtimeCounter) |
---|
| 2433 | { |
---|
| 2434 | // SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1); |
---|
| 2435 | // if (timeCounterType!=record) SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1); |
---|
| 2436 | SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1,isRoot); |
---|
| 2437 | if (timeCounterType!=record) SuperClassWriter::writeTimeAxisDataBounds(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
[586] | 2438 | |
---|
[1158] | 2439 | } |
---|
| 2440 | CTimer::get("Files : writing time axis").suspend(); |
---|
| 2441 | } |
---|
| 2442 | |
---|
[586] | 2443 | break; |
---|
[286] | 2444 | } |
---|
[567] | 2445 | } |
---|
[219] | 2446 | } |
---|
[498] | 2447 | catch (CNetCdfException& e) |
---|
| 2448 | { |
---|
| 2449 | StdString msg("On writing field data: "); |
---|
| 2450 | msg.append(fieldid); msg.append("\n"); |
---|
| 2451 | msg.append("In the context : "); |
---|
| 2452 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2453 | msg.append(e.what()); |
---|
[1130] | 2454 | ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg); |
---|
[498] | 2455 | } |
---|
[219] | 2456 | } |
---|
| 2457 | |
---|
| 2458 | //--------------------------------------------------------------- |
---|
| 2459 | |
---|
| 2460 | void CNc4DataOutput::writeTimeAxis_ |
---|
[347] | 2461 | (CField* field, |
---|
[343] | 2462 | const boost::shared_ptr<CCalendar> cal) |
---|
[219] | 2463 | { |
---|
| 2464 | StdOStringStream oss; |
---|
[1158] | 2465 | bool createInstantAxis=false ; |
---|
| 2466 | bool createCenteredAxis=false ; |
---|
| 2467 | bool createTimeCounterAxis=false ; |
---|
| 2468 | |
---|
[645] | 2469 | if (field->getOperationTimeType() == func::CFunctor::once) return ; |
---|
[488] | 2470 | |
---|
| 2471 | |
---|
[1158] | 2472 | StdString axisId ; |
---|
| 2473 | StdString axisBoundId; |
---|
[802] | 2474 | StdString timeid(getTimeCounterName()); |
---|
[614] | 2475 | StdString timeBoundId("axis_nbounds"); |
---|
[488] | 2476 | |
---|
[1158] | 2477 | StdString strTimeUnits ; |
---|
| 2478 | if (!field->file->time_units.isEmpty() && field->file->time_units==CFile::time_units_attr::days) strTimeUnits="days since " ; |
---|
| 2479 | else strTimeUnits="seconds since " ; |
---|
| 2480 | |
---|
| 2481 | if (field->getOperationTimeType() == func::CFunctor::instant) field->hasTimeInstant = true; |
---|
| 2482 | if (field->getOperationTimeType() == func::CFunctor::centered) field->hasTimeCentered = true; |
---|
| 2483 | |
---|
| 2484 | |
---|
| 2485 | if (field->file->time_counter.isEmpty()) |
---|
[488] | 2486 | { |
---|
[1158] | 2487 | if (timeCounterType==none) createTimeCounterAxis=true ; |
---|
| 2488 | if (field->hasTimeCentered) |
---|
| 2489 | { |
---|
| 2490 | timeCounterType=centered ; |
---|
| 2491 | if (!hasTimeCentered) createCenteredAxis=true ; |
---|
| 2492 | } |
---|
| 2493 | if (field->hasTimeInstant) |
---|
| 2494 | { |
---|
| 2495 | if (timeCounterType==none) timeCounterType=instant ; |
---|
| 2496 | if (!hasTimeInstant) createInstantAxis=true ; |
---|
| 2497 | } |
---|
[488] | 2498 | } |
---|
[1158] | 2499 | else if (field->file->time_counter==CFile::time_counter_attr::instant) |
---|
| 2500 | { |
---|
| 2501 | if (field->hasTimeCentered) |
---|
| 2502 | { |
---|
| 2503 | if (!hasTimeCentered) createCenteredAxis=true ; |
---|
| 2504 | } |
---|
| 2505 | if (field->hasTimeInstant) |
---|
| 2506 | { |
---|
| 2507 | if (timeCounterType==none) createTimeCounterAxis=true ; |
---|
| 2508 | timeCounterType=instant ; |
---|
| 2509 | if (!hasTimeInstant) createInstantAxis=true ; |
---|
| 2510 | } |
---|
| 2511 | } |
---|
| 2512 | else if (field->file->time_counter==CFile::time_counter_attr::centered) |
---|
| 2513 | { |
---|
| 2514 | if (field->hasTimeCentered) |
---|
| 2515 | { |
---|
| 2516 | if (timeCounterType==none) createTimeCounterAxis=true ; |
---|
| 2517 | timeCounterType=centered ; |
---|
| 2518 | if (!hasTimeCentered) createCenteredAxis=true ; |
---|
| 2519 | } |
---|
| 2520 | if (field->hasTimeInstant) |
---|
| 2521 | { |
---|
| 2522 | if (!hasTimeInstant) createInstantAxis=true ; |
---|
| 2523 | } |
---|
| 2524 | } |
---|
| 2525 | else if (field->file->time_counter==CFile::time_counter_attr::instant_exclusive) |
---|
| 2526 | { |
---|
| 2527 | if (field->hasTimeCentered) |
---|
| 2528 | { |
---|
| 2529 | if (!hasTimeCentered) createCenteredAxis=true ; |
---|
| 2530 | } |
---|
| 2531 | if (field->hasTimeInstant) |
---|
| 2532 | { |
---|
| 2533 | if (timeCounterType==none) createTimeCounterAxis=true ; |
---|
| 2534 | timeCounterType=instant ; |
---|
| 2535 | } |
---|
| 2536 | } |
---|
| 2537 | else if (field->file->time_counter==CFile::time_counter_attr::centered_exclusive) |
---|
| 2538 | { |
---|
| 2539 | if (field->hasTimeCentered) |
---|
| 2540 | { |
---|
| 2541 | if (timeCounterType==none) createTimeCounterAxis=true ; |
---|
| 2542 | timeCounterType=centered ; |
---|
| 2543 | } |
---|
| 2544 | if (field->hasTimeInstant) |
---|
| 2545 | { |
---|
| 2546 | if (!hasTimeInstant) createInstantAxis=true ; |
---|
| 2547 | } |
---|
| 2548 | } |
---|
| 2549 | else if (field->file->time_counter==CFile::time_counter_attr::exclusive) |
---|
| 2550 | { |
---|
| 2551 | if (field->hasTimeCentered) |
---|
| 2552 | { |
---|
| 2553 | if (timeCounterType==none) createTimeCounterAxis=true ; |
---|
| 2554 | if (timeCounterType==instant) createInstantAxis=true ; |
---|
| 2555 | timeCounterType=centered ; |
---|
| 2556 | } |
---|
| 2557 | if (field->hasTimeInstant) |
---|
| 2558 | { |
---|
| 2559 | if (timeCounterType==none) |
---|
| 2560 | { |
---|
| 2561 | createTimeCounterAxis=true ; |
---|
| 2562 | timeCounterType=instant ; |
---|
| 2563 | } |
---|
| 2564 | if (timeCounterType==centered) |
---|
| 2565 | { |
---|
| 2566 | if (!hasTimeInstant) createInstantAxis=true ; |
---|
| 2567 | } |
---|
| 2568 | } |
---|
| 2569 | } |
---|
| 2570 | else if (field->file->time_counter==CFile::time_counter_attr::none) |
---|
| 2571 | { |
---|
| 2572 | if (field->hasTimeCentered) |
---|
| 2573 | { |
---|
| 2574 | if (!hasTimeCentered) createCenteredAxis=true ; |
---|
| 2575 | } |
---|
| 2576 | if (field->hasTimeInstant) |
---|
| 2577 | { |
---|
| 2578 | if (!hasTimeInstant) createInstantAxis=true ; |
---|
| 2579 | } |
---|
| 2580 | } |
---|
| 2581 | else if (field->file->time_counter==CFile::time_counter_attr::record) |
---|
| 2582 | { |
---|
| 2583 | if (timeCounterType==none) createTimeCounterAxis=true ; |
---|
| 2584 | timeCounterType=record ; |
---|
| 2585 | if (field->hasTimeCentered) |
---|
| 2586 | { |
---|
| 2587 | if (!hasTimeCentered) createCenteredAxis=true ; |
---|
| 2588 | } |
---|
| 2589 | if (field->hasTimeInstant) |
---|
| 2590 | { |
---|
| 2591 | if (!hasTimeInstant) createInstantAxis=true ; |
---|
| 2592 | } |
---|
| 2593 | } |
---|
| 2594 | |
---|
| 2595 | if (createInstantAxis) |
---|
| 2596 | { |
---|
| 2597 | axisId="time_instant" ; |
---|
| 2598 | axisBoundId="time_instant_bounds"; |
---|
| 2599 | hasTimeInstant=true ; |
---|
| 2600 | } |
---|
[488] | 2601 | |
---|
[1158] | 2602 | if (createCenteredAxis) |
---|
| 2603 | { |
---|
| 2604 | axisId="time_centered" ; |
---|
| 2605 | axisBoundId="time_centered_bounds"; |
---|
| 2606 | hasTimeCentered=true ; |
---|
| 2607 | } |
---|
| 2608 | |
---|
| 2609 | |
---|
[498] | 2610 | try |
---|
[219] | 2611 | { |
---|
[1158] | 2612 | std::vector<StdString> dims; |
---|
| 2613 | |
---|
| 2614 | if (createInstantAxis || createCenteredAxis) |
---|
| 2615 | { |
---|
| 2616 | // Adding time_instant or time_centered |
---|
| 2617 | dims.push_back(timeid); |
---|
| 2618 | if (!SuperClassWriter::varExist(axisId)) |
---|
| 2619 | { |
---|
| 2620 | SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims); |
---|
[488] | 2621 | |
---|
[1158] | 2622 | CDate timeOrigin=cal->getTimeOrigin() ; |
---|
| 2623 | StdOStringStream oss2; |
---|
| 2624 | StdString strInitdate=oss2.str() ; |
---|
| 2625 | StdString strTimeOrigin=timeOrigin.toString() ; |
---|
| 2626 | this->writeTimeAxisAttributes(axisId, cal->getType(),strTimeUnits+strTimeOrigin, |
---|
| 2627 | strTimeOrigin, axisBoundId); |
---|
| 2628 | } |
---|
[219] | 2629 | |
---|
[1158] | 2630 | // Adding time_instant_bounds or time_centered_bounds variables |
---|
| 2631 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
| 2632 | { |
---|
| 2633 | dims.clear() ; |
---|
| 2634 | dims.push_back(timeid); |
---|
| 2635 | dims.push_back(timeBoundId); |
---|
| 2636 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
| 2637 | } |
---|
[498] | 2638 | } |
---|
[488] | 2639 | |
---|
[1158] | 2640 | if (createTimeCounterAxis) |
---|
[498] | 2641 | { |
---|
[692] | 2642 | // Adding time_counter |
---|
[1158] | 2643 | axisId = getTimeCounterName(); |
---|
[802] | 2644 | axisBoundId = getTimeCounterName() + "_bounds"; |
---|
[692] | 2645 | dims.clear(); |
---|
| 2646 | dims.push_back(timeid); |
---|
[1158] | 2647 | if (!SuperClassWriter::varExist(axisId)) |
---|
[692] | 2648 | { |
---|
[1158] | 2649 | SuperClassWriter::addVariable(axisId, NC_DOUBLE, dims); |
---|
| 2650 | SuperClassWriter::addAttribute("axis", string("T"), &axisId); |
---|
[488] | 2651 | |
---|
[1158] | 2652 | if (field->file->time_counter.isEmpty() || |
---|
| 2653 | (field->file->time_counter != CFile::time_counter_attr::record)) |
---|
[692] | 2654 | { |
---|
| 2655 | CDate timeOrigin = cal->getTimeOrigin(); |
---|
| 2656 | StdString strTimeOrigin = timeOrigin.toString(); |
---|
[498] | 2657 | |
---|
[1158] | 2658 | this->writeTimeAxisAttributes(axisId, cal->getType(), |
---|
| 2659 | strTimeUnits+strTimeOrigin, |
---|
[692] | 2660 | strTimeOrigin, axisBoundId); |
---|
| 2661 | } |
---|
| 2662 | } |
---|
| 2663 | |
---|
| 2664 | // Adding time_counter_bound dimension |
---|
[1158] | 2665 | if (field->file->time_counter.isEmpty() || (field->file->time_counter != CFile::time_counter_attr::record)) |
---|
[692] | 2666 | { |
---|
| 2667 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
| 2668 | { |
---|
| 2669 | dims.clear(); |
---|
| 2670 | dims.push_back(timeid); |
---|
| 2671 | dims.push_back(timeBoundId); |
---|
| 2672 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
| 2673 | } |
---|
| 2674 | } |
---|
[498] | 2675 | } |
---|
[488] | 2676 | } |
---|
[498] | 2677 | catch (CNetCdfException& e) |
---|
[488] | 2678 | { |
---|
[498] | 2679 | StdString msg("On writing time axis data: "); |
---|
| 2680 | msg.append("In the context : "); |
---|
| 2681 | CContext* context = CContext::getCurrent() ; |
---|
| 2682 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2683 | msg.append(e.what()); |
---|
| 2684 | ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \ |
---|
| 2685 | const boost::shared_ptr<CCalendar> cal)", << msg); |
---|
[488] | 2686 | } |
---|
[219] | 2687 | } |
---|
| 2688 | |
---|
| 2689 | //--------------------------------------------------------------- |
---|
[488] | 2690 | |
---|
[219] | 2691 | void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, |
---|
| 2692 | const StdString & calendar, |
---|
| 2693 | const StdString & units, |
---|
| 2694 | const StdString & time_origin, |
---|
[488] | 2695 | const StdString & time_bounds, |
---|
[219] | 2696 | const StdString & standard_name, |
---|
[613] | 2697 | const StdString & long_name) |
---|
[219] | 2698 | { |
---|
[498] | 2699 | try |
---|
| 2700 | { |
---|
| 2701 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 2702 | SuperClassWriter::addAttribute("long_name", long_name , &axis_name); |
---|
| 2703 | SuperClassWriter::addAttribute("calendar", calendar , &axis_name); |
---|
| 2704 | SuperClassWriter::addAttribute("units", units , &axis_name); |
---|
| 2705 | SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name); |
---|
| 2706 | SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name); |
---|
| 2707 | } |
---|
| 2708 | catch (CNetCdfException& e) |
---|
| 2709 | { |
---|
| 2710 | StdString msg("On writing time axis Attribute: "); |
---|
| 2711 | msg.append("In the context : "); |
---|
| 2712 | CContext* context = CContext::getCurrent() ; |
---|
| 2713 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2714 | msg.append(e.what()); |
---|
| 2715 | ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \ |
---|
[613] | 2716 | const StdString & calendar,\ |
---|
| 2717 | const StdString & units, \ |
---|
| 2718 | const StdString & time_origin, \ |
---|
| 2719 | const StdString & time_bounds, \ |
---|
| 2720 | const StdString & standard_name, \ |
---|
| 2721 | const StdString & long_name)", << msg); |
---|
[498] | 2722 | } |
---|
[219] | 2723 | } |
---|
[488] | 2724 | |
---|
[219] | 2725 | //--------------------------------------------------------------- |
---|
| 2726 | |
---|
| 2727 | void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, |
---|
| 2728 | const StdString & axis, |
---|
| 2729 | const StdString & standard_name, |
---|
| 2730 | const StdString & long_name, |
---|
| 2731 | const StdString & units, |
---|
| 2732 | const StdString & nav_model) |
---|
| 2733 | { |
---|
[498] | 2734 | try |
---|
| 2735 | { |
---|
[613] | 2736 | if (!axis.empty()) |
---|
| 2737 | SuperClassWriter::addAttribute("axis" , axis , &axis_name); |
---|
| 2738 | |
---|
[498] | 2739 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 2740 | SuperClassWriter::addAttribute("long_name" , long_name , &axis_name); |
---|
| 2741 | SuperClassWriter::addAttribute("units" , units , &axis_name); |
---|
[973] | 2742 | // SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name); |
---|
[498] | 2743 | } |
---|
| 2744 | catch (CNetCdfException& e) |
---|
| 2745 | { |
---|
| 2746 | StdString msg("On writing Axis Attribute: "); |
---|
| 2747 | msg.append("In the context : "); |
---|
| 2748 | CContext* context = CContext::getCurrent() ; |
---|
| 2749 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2750 | msg.append(e.what()); |
---|
| 2751 | ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \ |
---|
[613] | 2752 | const StdString & axis, \ |
---|
| 2753 | const StdString & standard_name, \ |
---|
| 2754 | const StdString & long_name, \ |
---|
| 2755 | const StdString & units, \ |
---|
| 2756 | const StdString & nav_model)", << msg); |
---|
[498] | 2757 | } |
---|
[219] | 2758 | } |
---|
| 2759 | |
---|
| 2760 | //--------------------------------------------------------------- |
---|
[488] | 2761 | |
---|
[219] | 2762 | void CNc4DataOutput::writeLocalAttributes |
---|
| 2763 | (int ibegin, int ni, int jbegin, int nj, StdString domid) |
---|
| 2764 | { |
---|
[498] | 2765 | try |
---|
| 2766 | { |
---|
[318] | 2767 | SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin); |
---|
| 2768 | SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni); |
---|
| 2769 | SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin); |
---|
| 2770 | SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj); |
---|
[498] | 2771 | } |
---|
| 2772 | catch (CNetCdfException& e) |
---|
| 2773 | { |
---|
| 2774 | StdString msg("On writing Local Attributes: "); |
---|
| 2775 | msg.append("In the context : "); |
---|
| 2776 | CContext* context = CContext::getCurrent() ; |
---|
| 2777 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2778 | msg.append(e.what()); |
---|
| 2779 | ERROR("CNc4DataOutput::writeLocalAttributes \ |
---|
| 2780 | (int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg); |
---|
| 2781 | } |
---|
| 2782 | |
---|
[219] | 2783 | } |
---|
| 2784 | |
---|
[628] | 2785 | void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid, |
---|
| 2786 | int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size) |
---|
[391] | 2787 | { |
---|
| 2788 | CArray<int,1> array(2) ; |
---|
| 2789 | |
---|
[498] | 2790 | try |
---|
| 2791 | { |
---|
| 2792 | SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ; |
---|
| 2793 | SuperClassWriter::addAttribute("DOMAIN_number", rank) ; |
---|
[629] | 2794 | array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1; |
---|
[498] | 2795 | SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ; |
---|
| 2796 | array=ni_glo,nj_glo ; |
---|
| 2797 | SuperClassWriter::addAttribute("DOMAIN_size_global", array) ; |
---|
| 2798 | array=ni,nj ; |
---|
| 2799 | SuperClassWriter::addAttribute("DOMAIN_size_local", array) ; |
---|
[819] | 2800 | array=ibegin+1,jbegin+1 ; |
---|
[498] | 2801 | SuperClassWriter::addAttribute("DOMAIN_position_first", array) ; |
---|
[819] | 2802 | array=ibegin+ni-1+1,jbegin+nj-1+1 ; |
---|
[498] | 2803 | SuperClassWriter::addAttribute("DOMAIN_position_last",array) ; |
---|
| 2804 | array=0,0 ; |
---|
| 2805 | SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ; |
---|
| 2806 | SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array); |
---|
| 2807 | SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ; |
---|
| 2808 | /* |
---|
| 2809 | SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ; |
---|
| 2810 | SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ; |
---|
| 2811 | SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ; |
---|
| 2812 | SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ; |
---|
| 2813 | */ |
---|
| 2814 | } |
---|
| 2815 | catch (CNetCdfException& e) |
---|
| 2816 | { |
---|
[628] | 2817 | StdString msg("On writing Local Attributes IOIPSL \n"); |
---|
[498] | 2818 | msg.append("In the context : "); |
---|
| 2819 | CContext* context = CContext::getCurrent() ; |
---|
| 2820 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2821 | msg.append(e.what()); |
---|
| 2822 | ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \ |
---|
| 2823 | (int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg); |
---|
| 2824 | } |
---|
[391] | 2825 | } |
---|
[219] | 2826 | //--------------------------------------------------------------- |
---|
| 2827 | |
---|
| 2828 | void CNc4DataOutput:: writeFileAttributes(const StdString & name, |
---|
| 2829 | const StdString & description, |
---|
| 2830 | const StdString & conventions, |
---|
| 2831 | const StdString & production, |
---|
| 2832 | const StdString & timeStamp) |
---|
| 2833 | { |
---|
[498] | 2834 | try |
---|
| 2835 | { |
---|
| 2836 | SuperClassWriter::addAttribute("name" , name); |
---|
| 2837 | SuperClassWriter::addAttribute("description", description); |
---|
[613] | 2838 | SuperClassWriter::addAttribute("title" , description); |
---|
| 2839 | SuperClassWriter::addAttribute("Conventions", conventions); |
---|
[1158] | 2840 | // SuperClassWriter::addAttribute("production" , production); |
---|
| 2841 | |
---|
| 2842 | StdString timeStampStr ; |
---|
| 2843 | if (file->time_stamp_name.isEmpty()) timeStampStr="timeStamp" ; |
---|
| 2844 | else timeStampStr=file->time_stamp_name ; |
---|
| 2845 | SuperClassWriter::addAttribute(timeStampStr, timeStamp); |
---|
| 2846 | |
---|
| 2847 | StdString uuidName ; |
---|
| 2848 | if (file->uuid_name.isEmpty()) uuidName="uuid" ; |
---|
| 2849 | else uuidName=file->uuid_name ; |
---|
| 2850 | |
---|
| 2851 | if (file->uuid_format.isEmpty()) SuperClassWriter::addAttribute(uuidName, getUuidStr()); |
---|
| 2852 | else SuperClassWriter::addAttribute(uuidName, getUuidStr(file->uuid_format)); |
---|
| 2853 | |
---|
[498] | 2854 | } |
---|
| 2855 | catch (CNetCdfException& e) |
---|
| 2856 | { |
---|
| 2857 | StdString msg("On writing File Attributes \n "); |
---|
| 2858 | msg.append("In the context : "); |
---|
| 2859 | CContext* context = CContext::getCurrent() ; |
---|
| 2860 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2861 | msg.append(e.what()); |
---|
| 2862 | ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \ |
---|
| 2863 | const StdString & description, \ |
---|
| 2864 | const StdString & conventions, \ |
---|
| 2865 | const StdString & production, \ |
---|
| 2866 | const StdString & timeStamp)", << msg); |
---|
| 2867 | } |
---|
[219] | 2868 | } |
---|
| 2869 | |
---|
| 2870 | //--------------------------------------------------------------- |
---|
| 2871 | |
---|
| 2872 | void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, |
---|
| 2873 | int data_dim, |
---|
| 2874 | int data_ni, |
---|
| 2875 | int data_nj, |
---|
| 2876 | int data_ibegin, |
---|
| 2877 | int data_jbegin) |
---|
| 2878 | { |
---|
[498] | 2879 | try |
---|
| 2880 | { |
---|
| 2881 | SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name); |
---|
| 2882 | SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name); |
---|
| 2883 | SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name); |
---|
| 2884 | SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name); |
---|
| 2885 | SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name); |
---|
| 2886 | } |
---|
| 2887 | catch (CNetCdfException& e) |
---|
| 2888 | { |
---|
| 2889 | StdString msg("On writing Mask Attributes \n "); |
---|
| 2890 | msg.append("In the context : "); |
---|
| 2891 | CContext* context = CContext::getCurrent() ; |
---|
| 2892 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2893 | msg.append(e.what()); |
---|
| 2894 | ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \ |
---|
| 2895 | int data_dim, \ |
---|
| 2896 | int data_ni, \ |
---|
| 2897 | int data_nj, \ |
---|
| 2898 | int data_ibegin, \ |
---|
| 2899 | int data_jbegin)", << msg); |
---|
| 2900 | } |
---|
[219] | 2901 | } |
---|
| 2902 | |
---|
| 2903 | ///-------------------------------------------------------------- |
---|
| 2904 | |
---|
[1158] | 2905 | StdSize CNc4DataOutput::getRecordFromTime(Time time, double factorUnit) |
---|
[707] | 2906 | { |
---|
| 2907 | std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time); |
---|
| 2908 | if (it == timeToRecordCache.end()) |
---|
| 2909 | { |
---|
[802] | 2910 | StdString timeAxisBoundsId(getTimeCounterName() + "_bounds"); |
---|
[1158] | 2911 | if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_centered_bounds"; |
---|
| 2912 | if (!SuperClassWriter::varExist(timeAxisBoundsId)) timeAxisBoundsId = "time_instant_bounds"; |
---|
[707] | 2913 | |
---|
| 2914 | CArray<double,2> timeAxisBounds; |
---|
[1158] | 2915 | std::vector<StdSize> dimSize(SuperClassWriter::getDimensions(timeAxisBoundsId)) ; |
---|
| 2916 | |
---|
[707] | 2917 | StdSize record = 0; |
---|
| 2918 | double dtime(time); |
---|
[1158] | 2919 | for (int n = dimSize[0] - 1; n >= 0; n--) |
---|
[707] | 2920 | { |
---|
[1158] | 2921 | SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective, n); |
---|
| 2922 | timeAxisBounds*=factorUnit ; |
---|
| 2923 | if (timeAxisBounds(1, 0) < dtime) |
---|
[707] | 2924 | { |
---|
| 2925 | record = n + 1; |
---|
| 2926 | break; |
---|
| 2927 | } |
---|
| 2928 | } |
---|
| 2929 | it = timeToRecordCache.insert(std::make_pair(time, record)).first; |
---|
| 2930 | } |
---|
| 2931 | return it->second; |
---|
| 2932 | } |
---|
[774] | 2933 | |
---|
| 2934 | ///-------------------------------------------------------------- |
---|
| 2935 | |
---|
| 2936 | bool CNc4DataOutput::isWrittenDomain(const std::string& domainName) const |
---|
| 2937 | { |
---|
| 2938 | return (this->writtenDomains.find(domainName) != this->writtenDomains.end()); |
---|
| 2939 | } |
---|
| 2940 | |
---|
| 2941 | bool CNc4DataOutput::isWrittenCompressedDomain(const std::string& domainName) const |
---|
| 2942 | { |
---|
| 2943 | return (this->writtenCompressedDomains.find(domainName) != this->writtenCompressedDomains.end()); |
---|
| 2944 | } |
---|
| 2945 | |
---|
| 2946 | bool CNc4DataOutput::isWrittenAxis(const std::string& axisName) const |
---|
| 2947 | { |
---|
| 2948 | return (this->writtenAxis.find(axisName) != this->writtenAxis.end()); |
---|
| 2949 | } |
---|
| 2950 | |
---|
| 2951 | bool CNc4DataOutput::isWrittenCompressedAxis(const std::string& axisName) const |
---|
| 2952 | { |
---|
| 2953 | return (this->writtenCompressedAxis.find(axisName) != this->writtenCompressedAxis.end()); |
---|
| 2954 | } |
---|
| 2955 | |
---|
[887] | 2956 | bool CNc4DataOutput::isWrittenScalar(const std::string& scalarName) const |
---|
| 2957 | { |
---|
| 2958 | return (this->writtenScalar.find(scalarName) != this->writtenScalar.end()); |
---|
| 2959 | } |
---|
| 2960 | |
---|
[774] | 2961 | void CNc4DataOutput::setWrittenDomain(const std::string& domainName) |
---|
| 2962 | { |
---|
| 2963 | this->writtenDomains.insert(domainName); |
---|
| 2964 | } |
---|
| 2965 | |
---|
| 2966 | void CNc4DataOutput::setWrittenCompressedDomain(const std::string& domainName) |
---|
| 2967 | { |
---|
| 2968 | this->writtenCompressedDomains.insert(domainName); |
---|
| 2969 | } |
---|
| 2970 | |
---|
| 2971 | void CNc4DataOutput::setWrittenAxis(const std::string& axisName) |
---|
| 2972 | { |
---|
| 2973 | this->writtenAxis.insert(axisName); |
---|
| 2974 | } |
---|
| 2975 | |
---|
| 2976 | void CNc4DataOutput::setWrittenCompressedAxis(const std::string& axisName) |
---|
| 2977 | { |
---|
| 2978 | this->writtenCompressedAxis.insert(axisName); |
---|
| 2979 | } |
---|
[887] | 2980 | |
---|
| 2981 | void CNc4DataOutput::setWrittenScalar(const std::string& scalarName) |
---|
| 2982 | { |
---|
| 2983 | this->writtenScalar.insert(scalarName); |
---|
| 2984 | } |
---|
[335] | 2985 | } // namespace xios |
---|