[2] | 1 | #-Q- platine #!/usr/bin/ksh |
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| 2 | #-Q- platine ################### |
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| 3 | #-Q- platine ## PLATINE CEA ## |
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| 4 | #-Q- platine ################### |
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| 5 | #-Q- platine #BSUB -J SE # Nom du job |
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| 6 | #-Q- platine #BSUB -N # message a la fin du job |
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| 7 | #-Q- platine #BSUB -n 1 # reservation des processeurs pour le job |
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| 8 | #-Q- platine #BSUB -W 1:00 # Limite temps |
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| 9 | #-Q- sx8brodie ####################### |
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| 10 | #-Q- sx8brodie ## SX8BRODIE IDRIS ## |
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| 11 | #-Q- sx8brodie ####################### |
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| 12 | #-Q- sx8brodie #QSUB -r SE # Nom du job |
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| 13 | #-Q- sx8brodie #QSUB -lT 1:00:00 # limite en temps total |
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| 14 | #-Q- sx8brodie #QSUB -lt 1:00:00 # limite en temps par process |
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| 15 | #-Q- sx8brodie #QSUB -lM 1Gb |
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| 16 | #-Q- sx8brodie #QSUB -eo # rassemble standard error et output |
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| 17 | #-Q- sx8brodie #QSUB -J m |
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| 18 | #-Q- sx8brodie #QSUB -l mpp_p=4 |
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| 19 | #-Q- sx8brodie #QSUB -s /bin/ksh # shell du job |
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| 20 | #-Q- sx8mercure #!/bin/ksh |
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| 21 | #-Q- sx8mercure ###################### |
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| 22 | #-Q- sx8mercure ## SX8MERCURE CEA ## |
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| 23 | #-Q- sx8mercure ###################### |
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| 24 | #-Q- sx8mercure #PBS -N SE # Nom du job |
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| 25 | #-Q- sx8mercure #PBS -j o # regroupement des stdout et stderr |
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| 26 | #-Q- sx8mercure #PBS -S /usr/bin/ksh # shell de soumission |
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| 27 | #-Q- sx8mercure #PBS -l memsz_job=1gb # Limite memoire a 1 Go |
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| 28 | #-Q- sx8mercure #PBS -l cputim_job=1:00:00 # Limite temps a 1 heures |
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| 29 | #-Q- sx8mercure #PBS -q scalaire |
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| 30 | #-Q- default #!/bin/ksh |
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| 31 | #-Q- default ################## |
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| 32 | #-Q- default ## DEFAULT HOST ## |
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| 33 | #-Q- default ################## |
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| 34 | |
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| 35 | #set -vx |
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| 36 | |
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| 37 | date |
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| 38 | |
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| 39 | #-Q- sx8brodie export OMP_NUM_THREADS=1 |
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| 40 | |
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[4] | 41 | # $Date$ |
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[5] | 42 | # $Author$ |
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| 43 | # $Revision$ |
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[2] | 44 | # IPSL (2006) |
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| 45 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 46 | |
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| 47 | ######################################################################## |
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| 48 | |
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| 49 | #D- Flag to determine if this job in a standalone mode |
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| 50 | #D- Default : value from AA_job if any |
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| 51 | StandAlone=${StandAlone:=true} |
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| 52 | |
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| 53 | #D- Flag to determine atlas job's output directory |
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| 54 | #D- Default : value from libIGCM_post.ksh if any |
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| 55 | POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} |
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| 56 | |
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| 57 | #D- Increased verbosity (1, 2, 3) |
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| 58 | #D- Default : value from AA_job if any |
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| 59 | Verbosity=${Verbosity:=3} |
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| 60 | |
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| 61 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 62 | #D- Default : value from AA_job if any |
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| 63 | DEBUG_debug=${DEBUG_debug:=false} |
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| 64 | |
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| 65 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 66 | #D- Default : value from AA_job if any |
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| 67 | libIGCM=${libIGCM:=/home/rech/ces/rces452/libIGCM} |
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| 68 | |
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| 69 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 70 | #D- Default : value from atmospheric driver if any |
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| 71 | RESOL_ATM=${RESOL_ATM:=LMD144142} |
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| 72 | |
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| 73 | #D- TEMPORARY Flag to determine ocean resolution |
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| 74 | #D- Default : value from ocean driver if any |
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| 75 | RESOL_OCE=${RESOL_OCE:=ORCA2} |
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| 76 | |
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| 77 | #D- TEMPORARY Flag to determine ice resolution |
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| 78 | #D- Default : value from ice driver if any |
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| 79 | RESOL_ICE=${RESOL_ICE:=ORCA2} |
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| 80 | |
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| 81 | #D- Flag to determine surface resolution |
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| 82 | #D- Default : value from surface driver if any |
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| 83 | RESOL_SRF=${RESOL_SRF:=LMD144142} |
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| 84 | |
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| 85 | ######################################################################## |
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| 86 | |
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| 87 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh ; |
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| 88 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh #; IGCM_debug_Check |
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| 89 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh #; IGCM_card_Check |
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| 90 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh #; IGCM_date_Check |
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| 91 | |
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| 92 | ######################################################################## |
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| 93 | |
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| 94 | #set -vx |
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| 95 | |
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| 96 | if [ ${DEBUG_debug} = true ] ; then |
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| 97 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
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| 98 | echo "RUN_DIR_PATH ${RUN_DIR_PATH} ok." |
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| 99 | fi |
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| 100 | IGCM_sys_Cd ${RUN_DIR_PATH} |
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| 101 | |
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| 102 | if [ ${StandAlone} = true ] ; then |
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| 103 | CARD_DIR=${SUBMIT_DIR} |
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| 104 | else |
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| 105 | CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} ) |
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| 106 | IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH} |
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| 107 | fi |
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| 108 | |
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| 109 | # |
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| 110 | # First of all |
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| 111 | # |
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| 112 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
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| 113 | typeset option |
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| 114 | for option in ${config_UserChoices[*]} ; do |
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| 115 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
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| 116 | done |
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| 117 | # |
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| 118 | echo |
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| 119 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
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| 120 | IGCM_debug_PrintVariables 3 config_UserChoices_JobName |
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| 121 | IGCM_debug_PrintVariables 3 config_UserChoices_LongName |
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| 122 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
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| 123 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
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| 124 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
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| 125 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
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| 126 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
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| 127 | echo |
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| 128 | |
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| 129 | #================================== |
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| 130 | |
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| 131 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName} |
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| 132 | # |
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| 133 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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| 134 | # |
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| 135 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card Post SeasonalFrequency |
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| 136 | # |
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| 137 | # Determine period for seasonnal average. Default : value from AA_job if any |
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| 138 | # |
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| 139 | DateBegin=${DateBegin:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )} |
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| 140 | # |
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[10] | 141 | DateEnd=${DateEnd:=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )} |
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[2] | 142 | # |
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| 143 | freq=$( echo ${config_Post_SeasonalFrequency} | sed -e "s/[yY]//" ) |
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| 144 | # |
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[10] | 145 | an_fin=$( expr $( IGCM_date_ConvertGregorianDateToJulian $DateEnd ) / 1000 ) |
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[2] | 146 | an_deb=$( IGCM_date_YearDigit $(( an_fin - freq + 1 )) ) |
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| 147 | an_fin=$( IGCM_date_YearDigit ${an_fin} ) |
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| 148 | # |
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| 149 | # For each component selected determine which files need post-processing |
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| 150 | # |
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| 151 | for comp in ${config_ListOfComponents[*]} ; do |
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| 152 | # |
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| 153 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 154 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 155 | # |
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| 156 | card=${CARD_DIR}/COMP/${compname}.card |
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| 157 | IGCM_card_DefineArrayFromOption ${card} OutputFiles List |
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| 158 | # |
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| 159 | ListFilesName=${compname}_OutputFiles_List |
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| 160 | eval FileName0=\${${ListFilesName}[0]} > /dev/null 2>&1 |
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| 161 | # |
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| 162 | if [ X${FileName0} != X${NULL_STR} ] ; then |
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| 163 | # |
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| 164 | #IGCM_debug_Print 1 "Component : ${compname}" |
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| 165 | # |
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| 166 | # INITIALISATION |
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| 167 | # |
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| 168 | eval NbFiles=\${#${ListFilesName}[@]} > /dev/null 2>&1 |
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| 169 | typeset i=0 |
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| 170 | # |
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| 171 | until [ $i -eq $NbFiles ]; do |
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| 172 | # |
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| 173 | eval file_in_=\${${ListFilesName}[$i]} > /dev/null 2>&1 |
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| 174 | eval file_in=${file_in_} |
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| 175 | let $(( i_ = i+2 )) |
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| 176 | eval flag_post_=\${${ListFilesName}[$i_]} > /dev/null 2>&1 |
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| 177 | eval flag_post=${flag_post_} |
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| 178 | # |
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| 179 | if [ X${flag_post} != XNONE ] ; then |
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| 180 | # |
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| 181 | # Initialize ${flag_post}_${compname}_${post_freq} |
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| 182 | # |
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| 183 | eval ${flag_post}_${compname}_SeasonalFrequency=true |
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| 184 | fi |
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| 185 | let $(( i=i+3 )) |
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| 186 | done |
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| 187 | fi |
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| 188 | |
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| 189 | for element in $( set | grep Post_ | grep ${compname}_SeasonalFrequency | grep -i "=true" ) ; do |
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| 190 | # |
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| 191 | FILE=$( echo ${element} | awk -F "_${compname}" '{print $1}' | awk "-FPost_" '{print $2}' ) |
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| 192 | # |
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| 193 | IGCM_card_DefineArrayFromOption ${card} Post_${FILE} Patches |
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| 194 | # |
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| 195 | # CREATE LIST |
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| 196 | # |
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| 197 | DIRECTORY=${R_SAVE}/${comp}/Analyse/SE |
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| 198 | # |
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| 199 | TestedFile=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${FILE}.nc |
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| 200 | # |
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| 201 | if [ ! -f ${DIRECTORY}/${TestedFile} ] ; then |
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| 202 | eval set +A LISTE_FILE_${comp} \$\{LISTE_FILE_${comp}[*]} ${FILE} |
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| 203 | eval set +A LISTE_PATCHES_${FILE} \$\{${compname}_Post_${FILE}_Patches[*]} |
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| 204 | if [ X$( eval echo \${LISTE_PATCHES_${FILE}[0]} ) != X${NULL_STR} ]; then |
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| 205 | for Patch in $( eval echo \${LISTE_PATCHES_${FILE}[*]} ); do |
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| 206 | if [ Xload${Patch} != X ] ; then |
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| 207 | . ${libIGCM}/libIGCM_post/IGCM_${Patch}.ksh |
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| 208 | eval load${Patch}=loaded |
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| 209 | fi |
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| 210 | done |
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| 211 | fi |
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| 212 | fi |
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| 213 | # |
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| 214 | done # for element |
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| 215 | done # for comp |
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| 216 | |
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| 217 | for comp in ${config_ListOfComponents[*]} ; do |
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| 218 | # |
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| 219 | eval R_OUT_${comp}=${R_SAVE}/${comp} |
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| 220 | # |
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| 221 | i=0 |
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| 222 | for file in $( eval echo \${LISTE_FILE_${comp}[*]} ); do |
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| 223 | # |
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| 224 | # Determine in which output can we find file |
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| 225 | # IE : Output/MO or Output/DA or ... |
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| 226 | # |
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| 227 | FlagDir=$( echo ${file} | awk -F "_" '{print $1}' ) |
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| 228 | case ${FlagDir} in |
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[10] | 229 | *Y) FreqDir=YE ;; |
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| 230 | *M) FreqDir=MO ;; |
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| 231 | 5D|1D|*D) FreqDir=DA ;; |
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[2] | 232 | HF) FreqDir=HF ;; |
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| 233 | INS) FreqDir=INS ;; |
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| 234 | esac |
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| 235 | # |
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| 236 | RESULT_SE=${config_UserChoices_JobName}_SE_${an_deb}_${an_fin}_${file}.nc |
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| 237 | # Do not redoo an existing SE |
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| 238 | if [ -f ${R_SAVE}/${comp}/Analyse/SE/${RESULT_SE} ] ; then |
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| 239 | continue |
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| 240 | fi |
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| 241 | # |
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| 242 | eval file_path=\${R_OUT_${comp}}/Output/${FreqDir}/ |
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| 243 | # |
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| 244 | case ${config_UserChoices_PeriodLength} in |
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| 245 | # For Yearly simulation : |
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| 246 | 1Y|1y) |
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| 247 | (( an = an_deb )) |
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| 248 | # Initialize array |
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| 249 | set -A liste_file_se |
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| 250 | set -A liste_file_se_tmp |
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| 251 | while [ ${an} -le ${an_fin} ] ; do |
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| 252 | moisL=$( IGCM_date_DaysInMonth ${an} ${mois} ) |
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| 253 | # |
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| 254 | an4=$(printf "%04i\n" ${an} ) |
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| 255 | # |
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| 256 | diy=$( IGCM_date_DaysInYear $an4 ) |
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| 257 | afin=$( IGCM_date_AddDaysToGregorianDate ${an4}0101 $(( diy - 1 )) ) |
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| 258 | date=${an4}0101_${afin} |
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| 259 | set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 260 | set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc |
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| 261 | (( an = an + 1 )) |
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| 262 | done |
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| 263 | # |
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| 264 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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| 265 | eval ExitFlag=false |
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| 266 | IGCM_debug_Verif_Exit_Post |
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| 267 | |
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| 268 | # Apply IGCM_Patch if needed |
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| 269 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
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| 270 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
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| 271 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
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| 272 | IGCM_${Patch} ${file_t} |
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| 273 | done |
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| 274 | done |
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| 275 | fi |
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| 276 | |
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| 277 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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| 278 | # |
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| 279 | (( nb = ${mois} - 1 )) |
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| 280 | # |
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| 281 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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| 282 | IGCM_sys_ncra -O -d time_counter,${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
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| 283 | done |
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| 284 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
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| 285 | eval ExitFlag=false |
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| 286 | IGCM_debug_Verif_Exit_Post |
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| 287 | ;; |
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[10] | 288 | # For a Multi-Year simulation : |
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| 289 | *Y|*y) |
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| 290 | PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} | awk -F '[yY]' '{print $1}' ) |
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| 291 | (( an = an_deb )) |
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| 292 | # Initialize array |
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| 293 | set -A liste_file_se |
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| 294 | set -A liste_file_se_tmp |
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| 295 | while [ ${an} -le ${an_fin} ] ; do |
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| 296 | moisL=$( IGCM_date_DaysInMonth ${an} ${mois} ) |
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| 297 | # |
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| 298 | an4=$(printf "%04i\n" ${an} ) |
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| 299 | # |
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| 300 | (( diy = 0 )) |
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| 301 | (( ian = 0 )) |
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| 302 | while [ ${ian} -lt ${PeriodLengthInYears} ] ; do |
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| 303 | # |
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| 304 | ian4=$(printf "%04i\n" $(( an + ian )) ) |
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| 305 | (( diy = diy + $( IGCM_date_DaysInYear $ian4 ) )) |
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| 306 | (( ian = ian + 1 )) |
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| 307 | done |
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| 308 | afin=$( IGCM_date_AddDaysToGregorianDate ${an4}0101 $(( diy - 1 )) ) |
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| 309 | date=${an4}0101_${afin} |
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| 310 | set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 311 | set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc |
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| 312 | (( an = an + PeriodLengthInYears )) |
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| 313 | done |
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| 314 | # |
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| 315 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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| 316 | eval ExitFlag=false |
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| 317 | IGCM_debug_Verif_Exit_Post |
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| 318 | |
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| 319 | # Apply IGCM_Patch if needed |
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| 320 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
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| 321 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
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| 322 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
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| 323 | IGCM_${Patch} ${file_t} |
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| 324 | done |
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| 325 | done |
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| 326 | fi |
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| 327 | |
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| 328 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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| 329 | # |
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| 330 | (( nb = ${mois} - 1 )) |
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| 331 | # |
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| 332 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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| 333 | IGCM_sys_ncra -O -d time_counter,${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
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| 334 | done |
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| 335 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
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| 336 | eval ExitFlag=false |
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| 337 | IGCM_debug_Verif_Exit_Post |
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| 338 | ;; |
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[2] | 339 | # For Monthly simulation : |
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| 340 | 1M|1m) |
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| 341 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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| 342 | # |
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| 343 | (( nb = ${mois} - 1 )) |
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| 344 | # |
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| 345 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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| 346 | # |
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| 347 | (( an = an_deb )) |
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| 348 | # Initialize array |
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| 349 | set -A liste_file_se |
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| 350 | set -A liste_file_se_tmp |
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| 351 | while [ ${an} -le ${an_fin} ] ; do |
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| 352 | moisL=$( IGCM_date_DaysInMonth ${an} ${mois} ) |
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| 353 | # |
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| 354 | an4=$(printf "%04i\n" ${an} ) |
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| 355 | # |
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| 356 | date=${an4}${mois}01_${an4}${mois}${moisL} |
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| 357 | set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 358 | set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc |
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| 359 | (( an = an + 1 )) |
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| 360 | done |
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| 361 | # |
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| 362 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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| 363 | eval ExitFlag=false |
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| 364 | IGCM_debug_Verif_Exit_Post |
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| 365 | |
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| 366 | # Apply IGCM_Patch if needed |
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| 367 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
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| 368 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
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| 369 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
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| 370 | IGCM_${Patch} ${file_t} |
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| 371 | done |
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| 372 | done |
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| 373 | fi |
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| 374 | |
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[10] | 375 | IGCM_sys_ncra -O ${liste_file_se_tmp} ${OUT_SE[${nb}]} |
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| 376 | MENAGE_LOCAL ${liste_file_se_tmp} |
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| 377 | # |
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[2] | 378 | IGCM_debug_Verif_Exit_Post |
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| 379 | done |
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| 380 | ;; |
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[10] | 381 | |
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| 382 | # For Multi-Monthly simulation : |
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| 383 | *M|*m) |
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| 384 | PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} | awk -F '[mM]' '{print $1}' ) |
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| 385 | # Must be a divisor of 12 !!! e.g. 2,3,4 and 6 only |
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| 386 | if ( [ $PeriodLengthInMonths -ne 2 ] && \ |
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| 387 | [ $PeriodLengthInMonths -ne 3 ] && \ |
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| 388 | [ $PeriodLengthInMonths -ne 4 ] && \ |
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| 389 | [ $PeriodLengthInMonths -ne 6 ] ) ; then |
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| 390 | echo "create_se.job can't work with this monthly Period : ",$PeriodLengthInMonths,"M !!" |
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| 391 | echo "It must be a divisor of twelve." |
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| 392 | echo "We will stop there." |
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| 393 | IGCM_debug_Verif_Exit_Post |
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| 394 | else |
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| 395 | # |
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| 396 | (( NbSet = 12 / PeriodLengthInMonths )) |
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| 397 | (( moisd = 01 )) |
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| 398 | (( Mset = 1 )) |
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| 399 | while [ ${Mset} -le ${NbSet} ] ; do |
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| 400 | moisf=$(printf "%02i\n" $(( moisd + PeriodLengthInMonths - 1 )) ) |
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| 401 | moisd=$(printf "%02i\n" ${moisd} ) |
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| 402 | # |
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| 403 | (( an = an_deb )) |
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| 404 | # Initialize array |
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| 405 | set -A liste_file_se |
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| 406 | set -A liste_file_se_tmp |
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| 407 | while [ ${an} -le ${an_fin} ] ; do |
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| 408 | moisL=$( IGCM_date_DaysInMonth ${an} ${moisf} ) |
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| 409 | # |
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| 410 | an4=$(printf "%04i\n" ${an} ) |
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| 411 | # |
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| 412 | date=${an4}${moisd}01_${an4}${moisf}${moisL} |
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| 413 | set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 414 | set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc |
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| 415 | (( an = an + 1 )) |
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| 416 | done |
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| 417 | # |
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| 418 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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| 419 | eval ExitFlag=false |
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| 420 | IGCM_debug_Verif_Exit_Post |
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| 421 | |
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| 422 | # Apply IGCM_Patch if needed |
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| 423 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
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| 424 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
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| 425 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
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| 426 | IGCM_${Patch} ${file_t} |
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| 427 | done |
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| 428 | done |
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| 429 | fi |
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| 430 | |
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| 431 | (( imois = moisd )) |
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| 432 | (( i = 0 )) |
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| 433 | while [ ${imois} -le ${moisf} ] ; do |
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| 434 | # |
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| 435 | (( nb = ${imois} - 1 )) |
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| 436 | # |
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| 437 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${imois}_${an_deb}_${an_fin}_${file}.nc |
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| 438 | IGCM_sys_ncra -O -d time_counter,${i},,${PeriodLengthInMonths} ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
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| 439 | (( imois = imois + 1 )) |
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| 440 | (( i = i + 1 )) |
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| 441 | done |
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| 442 | |
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| 443 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
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| 444 | eval ExitFlag=false |
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| 445 | IGCM_debug_Verif_Exit_Post |
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| 446 | moisf=$(printf "%02i\n" $(( moisf + 1 )) ) |
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| 447 | |
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| 448 | (( Mset = Mset + 1 )) |
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| 449 | done |
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| 450 | fi |
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| 451 | ;; |
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[2] | 452 | *D|*d) |
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| 453 | for mois in 01 02 03 04 05 06 07 08 09 10 11 12 ; do |
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| 454 | # |
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| 455 | (( nb = ${mois} - 1 )) |
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| 456 | # |
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| 457 | OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc |
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| 458 | # |
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| 459 | (( an = an_deb )) |
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| 460 | # Initialize array |
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| 461 | set -A liste_file_se |
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| 462 | set -A liste_file_se_tmp |
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| 463 | while [ ${an} -le ${an_fin} ] ; do |
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| 464 | moisL=$( IGCM_date_DaysInMonth ${an} ${mois} ) |
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| 465 | # |
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| 466 | an4=$(printf "%04i\n" ${an} ) |
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| 467 | # |
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| 468 | length_d=$(( ${config_UserChoices_PeriodLength} - 1 )) |
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| 469 | # for one day |
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| 470 | if [ ${length_d} -eq 1 ] ; then |
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| 471 | (( length_d = 0 )) |
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| 472 | fi |
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| 473 | (( day = 1 )) |
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| 474 | while [ ${day} -le ${moisL} ] ; do |
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| 475 | day2=$(printf "%02i\n" ${day} ) |
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| 476 | day_beg=${an4}${mois}${day2} |
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| 477 | day_end=$( IGCM_date_AddDaysToGregorianDate ${day_beg} ${length_d} ) |
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| 478 | date=${an4}${mois}${day_beg}_${an4}${mois}${day_end} |
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| 479 | set +A liste_file_se ${liste_file_se[*]} ${file_path}${config_UserChoices_JobName}_${date}_${file}.nc |
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| 480 | set +A liste_file_se_tmp ${liste_file_se_tmp[*]} ${config_UserChoices_JobName}_${date}_${file}.nc |
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| 481 | (( day = day + 1 )) |
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| 482 | done |
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| 483 | (( an = an + 1 )) |
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| 484 | done |
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| 485 | # |
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| 486 | IGCM_sys_Get /l liste_file_se[*] ${RUN_DIR_PATH} |
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| 487 | eval ExitFlag=false |
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| 488 | IGCM_debug_Verif_Exit_Post |
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| 489 | |
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| 490 | # Apply IGCM_Patch if needed |
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| 491 | if [ X$( eval echo \${LISTE_PATCHES_${file}[0]} ) != X${NULL_STR} ]; then |
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| 492 | for file_t in $( eval echo ${liste_file_se_tmp[*]} ); do |
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| 493 | for Patch in $( eval echo \${LISTE_PATCHES_${file}[*]} ); do |
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| 494 | IGCM_${Patch} ${file_t} |
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| 495 | done |
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| 496 | done |
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| 497 | fi |
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| 498 | |
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| 499 | IGCM_sys_ncra -O ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} |
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| 500 | IGCM_sys_Rm ${liste_file_se_tmp[*]} |
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| 501 | eval ExitFlag=false |
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| 502 | IGCM_debug_Verif_Exit_Post |
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| 503 | done |
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| 504 | ;; |
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| 505 | esac |
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| 506 | # |
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| 507 | IGCM_sys_ncrcat -O ${OUT_SE[*]} ${RESULT_SE} |
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| 508 | # |
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| 509 | IGCM_sys_Rm ${OUT_SE[*]} |
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| 510 | # |
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| 511 | ${ncatted} -a modulo,time_counter,c,c," " ${RESULT_SE} |
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| 512 | # |
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| 513 | eval IGCM_sys_Put_Out ${RESULT_SE} \${R_OUT_${comp}}/Analyse/SE/${RESULT_SE} |
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| 514 | IGCM_sys_Rm ${RESULT_SE} |
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| 515 | # |
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| 516 | eval ExitFlag=false |
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| 517 | IGCM_debug_Verif_Exit_Post |
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| 518 | done |
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| 519 | done |
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| 520 | |
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| 521 | # DODS copy |
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| 522 | for comp in ${config_ListOfComponents[*]} ; do |
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| 523 | for SE_Dir in $( ls ${R_SAVE}/${comp}/Analyse/ 2>&1 | grep SE ) ; do |
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| 524 | [ -d ${R_SAVE}/${comp}/Analyse/${SE_Dir} ] && IGCM_sys_Put_Dods ${comp}/Analyse/${SE_Dir} |
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| 525 | done |
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| 526 | done |
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| 527 | |
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| 528 | YEARS=${an_deb}_${an_fin} |
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| 529 | |
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| 530 | # clean environment variables and export usefull one : |
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| 531 | if [ X$( hostname -s ) = Xrhodes ] ; then |
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| 532 | LISTE_ENV=$( env | grep -iv MYLANG | grep -iv HOST | grep -iv LOGIN | grep -iv config_ | grep -iv R_ | grep -iv libIGCM | grep -iv PERIOD \ |
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| 533 | | grep -iv DMFDIR | grep -iv AN_| grep -iv YEARS | grep -iv ex | grep -iv RESOL_ | grep -iv PATH | grep -iv WORKDIR | grep -iv USER \ |
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| 534 | | grep -iv LOGNAME | grep -iv PROFILE | grep -iv ENV | grep -iv TMPDIR | grep -iv POST_DIR | grep -iv DB |awk -F= '{print $1}' ) |
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| 535 | |
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| 536 | for variables in ${LISTE_ENV} ; do |
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| 537 | unset ${variables} |
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| 538 | done |
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| 539 | fi |
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| 540 | |
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| 541 | export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone |
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| 542 | export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_SRF |
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| 543 | export R_SAVE; export config_UserChoices_JobName; export config_UserChoices_TagName; export YEARS; |
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| 544 | listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_SRF,R_SAVE,config_UserChoices_JobName,config_UserChoices_TagName,YEARS" |
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| 545 | export listVarEnv; |
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| 546 | |
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| 547 | #D- |
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| 548 | # -------------------------------------------------------------------- |
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| 549 | #D- Test if all was right before ATLAS |
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| 550 | # -------------------------------------------------------------------- |
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| 551 | IGCM_debug_Verif_Exit_Post |
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| 552 | |
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| 553 | if [ ${config_UserChoices_TagName} = "IPSLCM4_v1_OASIS3" ] || \ |
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| 554 | [ ${config_UserChoices_TagName} = "IPSLCM4_v2" ] || \ |
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| 555 | [ ${config_UserChoices_TagName} = "IPSL_ESM_V1" ] ; then |
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| 556 | # |
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| 557 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
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| 558 | IGCM_sys_QsubPost atlas_LMDZ ; |
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| 559 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
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| 560 | IGCM_sys_QsubPost additionnal ; |
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| 561 | # |
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| 562 | elif [ ${config_UserChoices_TagName} = "LMDZOR" ] || \ |
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| 563 | [ ${config_UserChoices_TagName} = "LMDZ4OR" ] || \ |
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| 564 | [ ${config_UserChoices_TagName} = "LMDz4OR_v2" ] ; then |
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| 565 | # |
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| 566 | IGCM_sys_QsubPost atlas_LMDZ ; |
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| 567 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
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| 568 | # |
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| 569 | elif [ ${config_UserChoices_TagName} = "OL" ] || \ |
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| 570 | [ ${config_UserChoices_TagName} = "OL2" ] ; then |
---|
| 571 | # |
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| 572 | IGCM_sys_QsubPost atlas_ORCHIDEE ; |
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| 573 | # |
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| 574 | elif [ ${config_UserChoices_TagName} = "ORCA2_LIM" ] ; then |
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| 575 | # |
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| 576 | IGCM_sys_QsubPost atlas_ORCA_LIM ; |
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| 577 | IGCM_sys_QsubPost additionnal ; |
---|
| 578 | # |
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| 579 | fi |
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