source: branches/libIGCM_MPI_OpenMP/AA_rebuild_fromWorkdir @ 563

Last change on this file since 563 was 563, checked in by mafoipsl, 12 years ago

curie : first try for curie machine.
  • Property svn:keywords set to Revision Author Date
File size: 11.4 KB
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1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r REBUILDWRK     # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- curie ######################
12#-Q- curie ## CURIE   TGCC/CEA ##
13#-Q- curie ######################
14#-Q- curie #MSUB -r TS             # Nom du job               
15#-Q- curie #MSUB -eo
16#-Q- curie #MSUB -n 1              # Reservation du processus
17#-Q- curie #MSUB -T 86400          # Limite de temps elapsed du job
18#-Q- platine #!/usr/bin/ksh
19#-Q- platine ###################
20#-Q- platine ## PLATINE   CEA ##
21#-Q- platine ###################
22#-Q- platine #BSUB -J REBUILDWRK             # Nom du job
23#-Q- platine #BSUB -N                        # message a la fin du job
24#-Q- platine #BSUB -n 1                      # reservation des processeurs pour le job
25#-Q- platine #BSUB -W 4:00                   # Limite temps
26#-Q- platine #BSUB -q post                   # Passage en queue post
27#-Q- platine #BSUB -L /bin/ksh
28#-Q- sx8brodie #!/bin/ksh
29#-Q- sx8brodie #######################
30#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
31#-Q- sx8brodie #######################
32#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
33#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
34#-Q- sx8brodie # Nom du travail LoadLeveler
35#-Q- sx8brodie # @ job_name   = REBUILDWRK
36#-Q- sx8brodie # Fichier de sortie standard du travail       
37#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
38#-Q- sx8brodie # Fichier de sortie d'erreur du travail
39#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
40#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
41#-Q- sx8brodie # @ notification = error
42#-Q- sx8brodie # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
43#-Q- sx8brodie # @ queue
44#-Q- aix6 #!/bin/ksh
45#-Q- aix6 #######################
46#-Q- aix6 ##   VARGAS   IDRIS  ##
47#-Q- aix6 #######################
48#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
49#-Q- aix6 # @ wall_clock_limit = 10:00:00
50#-Q- aix6 # Nom du travail LoadLeveler
51#-Q- aix6 # @ job_name   = REBUILDWRK
52#-Q- aix6 # Fichier de sortie standard du travail
53#-Q- aix6 # @ output     = $(job_name).$(jobid)
54#-Q- aix6 # Fichier de sortie d'erreur du travail
55#-Q- aix6 # @ error      =  $(job_name).$(jobid)
56#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
57#-Q- aix6 # @ notification = error
58#-Q- aix6 # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
59#-Q- aix6 # @ queue
60#-Q- ulam #!/bin/ksh
61#-Q- ulam #######################
62#-Q- ulam ##   VARGAS   IDRIS  ##
63#-Q- ulam #######################
64#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
65#-Q- ulam # @ wall_clock_limit = 10:00:00
66#-Q- ulam # Nom du travail LoadLeveler
67#-Q- ulam # @ job_name   = REBUILDWRK
68#-Q- ulam # Fichier de sortie standard du travail
69#-Q- ulam # @ output     = $(job_name).$(jobid)
70#-Q- ulam # Fichier de sortie d'erreur du travail
71#-Q- ulam # @ error      =  $(job_name).$(jobid)
72#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
73#-Q- ulam # @ notification = error
74#-Q- ulam # @ environment  = $DEBUG_debug ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $RebuildFromArchive ; $POST_DIR ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER
75#-Q- ulam # @ queue
76#-Q- sx8mercure #!/bin/ksh
77#-Q- sx8mercure ######################
78#-Q- sx8mercure ## SX8MERCURE   CEA ##
79#-Q- sx8mercure ######################
80#-Q- sx8mercure #PBS -N REBUILDWRK           # Nom du job
81#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
82#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
83#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
84#-Q- sx8mercure #PBS -l cputim_job=24:00:00  # Limite temps a 1 heures
85#-Q- sx8mercure #PBS -q scalaire
86#-Q- sx9mercure #!/bin/ksh
87#-Q- sx9mercure ######################
88#-Q- sx9mercure ## CESIUM   CEA ##
89#-Q- sx9mercure ######################
90#-Q- sx9mercure #MSUB -r REBUILDWRK     # Nom du job               
91#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
92#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
93#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
94#-Q- sx9mercure #MSUB -E "-j o"
95#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
96#-Q- titane #!/bin/ksh
97#-Q- titane ######################
98#-Q- titane ## TITANE   CEA     ##
99#-Q- titane ######################
100#-Q- titane #MSUB -r REBUILDWRK     # Nom du job               
101#-Q- titane #MSUB -eo
102#-Q- titane #MSUB -n 1              # Reservation du processus
103#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
104#-Q- titane #MSUB -p gen2211
105#-Q- titane #MSUB -q mono
106#-Q- lxiv8 ######################
107#-Q- lxiv8 ## OBELIX      LSCE ##
108#-Q- lxiv8 ######################
109#-Q- lxiv8 #PBS -N REBUILDWRK
110#-Q- lxiv8 #PBS -m a
111#-Q- lxiv8 #PBS -j oe
112#-Q- lxiv8 #PBS -q medium
113#-Q- lxiv8 #PBS -o REBUILDWRK.$$
114#-Q- lxiv8 #PBS -S /bin/ksh
115#-Q- default #!/bin/ksh
116#-Q- default ##################
117#-Q- default ## DEFAULT HOST ##
118#-Q- default ##################
119
120#**************************************************************
121# Author: Sebastien Denvil
122# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr
123# $Revision::                                          $ Revision of last commit
124# $Author::                                            $ Author of last commit
125# $Date::                                              $ Date of last commit
126# IPSL (2006)
127#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
128#
129#**************************************************************
130
131#set -eu
132#set -vx
133
134date
135
136#-Q- sx8brodie export OMP_NUM_THREADS=1
137#-Q- aix6 export OMP_NUM_THREADS=1
138#-Q- ulam export OMP_NUM_THREADS=1
139
140########################################################################
141
142#D- Flag to determine if this job in a standalone mode
143#D- Default : value from AA_job if any
144StandAlone=${StandAlone:=true}
145
146#D- Low level debug : to bypass lib test checks and stack construction
147#D- Default : value from AA_job if any
148libIGCM=${libIGCM:=::modipsl::/libIGCM}
149# WARNING for StandAlone used : To run this script on some machine,
150# you must check MirrorlibIGCM variable in sys library.
151# If this variable is true, you must use libIGCM_POST path instead
152# of your running libIGCM directory.
153
154#-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer.
155MASTER=${MASTER:=mercure|titane|brodie|vargas}
156
157#D- Do we rebuild parallel output from archive or from ${BIGDIR}
158#D- Default : value from AA_job if any
159RebuildFromArchive=${RebuildFromArchive:=false}
160
161#D- Directory where files we need to rebuild are store
162#D- Default : value from AA_job if any
163#D- if RebuildFromArchive=true REBUILD_DIR=${DMFDIR}/IGCM_OUT/.../JobName/TMP
164#D- example : /dmnfs09/cont003/p86denv/IGCM_OUT/IPSLCM5/CM5PIRC7/TMP
165#D- if RebuildFromArchive=false REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/
166#D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW
167REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES}
168
169#D- How many directory to rebuild we have to consider
170#D- Default : value from AA_job if any
171NbRebuildDir=${NbRebuildDir:=1000}
172
173#D- Suffix date we will use to determine which directory to rebuild
174#D- We will rebuild NbRebuildDir before and including PeriodDateBegin
175#D- Default : value from AA_job if any
176LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}}
177
178#D- Flag to determine atlas job's output directory
179#D- Default : value from libIGCM_post.ksh if any
180POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}}
181
182#-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK.
183libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM}
184
185#D- Increased verbosity (1, 2, 3)
186#D- Default : value from AA_job if any
187Verbosity=${Verbosity:=3}
188
189#D- Low level debug : to bypass lib test checks and stack construction
190#D- Default : value from AA_job if any
191DEBUG_debug=${DEBUG_debug:=false}
192
193#D- TEMPORARY Flag to determine atmospheric resolution
194#D- Default : value from atmospheric driver if any
195RESOL_ATM=${RESOL_ATM:=ALL}
196
197#D- TEMPORARY Flag to determine ocean resolution
198#D- Default : value from ocean driver if any
199RESOL_OCE=${RESOL_OCE:=ORCA2}
200
201#D- TEMPORARY Flag to determine ice resolution
202#D- Default : value from ice driver if any
203RESOL_ICE=${RESOL_ICE:=ORCA2}
204
205#D- TEMPORARY Flag to determine biogeochemistry resolution
206#D- Default : value from ice driver if any
207RESOL_MBG=${RESOL_MBG:=ORCA2}
208
209#D- Flag to determine surface resolution
210#D- Default : value from surface driver if any
211RESOL_SRF=ALL
212
213#D- Flag to determine surface resolution
214#D- Default : value from surface driver if any
215RESOL_SBG=ALL
216
217########################################################################
218
219. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
220      ( ${DEBUG_debug} ) && IGCM_debug_Check
221. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
222     ( ${DEBUG_debug} ) && IGCM_card_Check
223. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
224     ( ${DEBUG_debug} ) && IGCM_date_Check
225#-------
226. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
227. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
228
229########################################################################
230
231#set -vx
232
233RUN_DIR=${RUN_DIR_PATH}
234IGCM_sys_MkdirWork ${RUN_DIR}
235IGCM_sys_Cd ${RUN_DIR}
236
237# ------------------------------------------------------------------
238# Test if all was right before proceeding further
239# ------------------------------------------------------------------
240IGCM_debug_Verif_Exit_Post
241
242#
243if [ ${RebuildFromArchive} = true ] ; then
244    ListAllRebuildDir=$( IGCM_sys_RshArchive ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
245else
246    ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} )
247fi
248#
249
250for directory in ${ListAllRebuildDir} ; do
251    #
252    if [ ${RebuildFromArchive} = true ] ; then
253        IGCM_sys_Get_Dir ${directory} ${RUN_DIR}
254    else
255        IGCM_sys_Get_Master ${directory} ${RUN_DIR}
256    fi
257    #
258    IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} )
259
260    # --------------------------------------------------------------------
261    # Source function include in the REBUILD ksh and rebuild
262    # --------------------------------------------------------------------
263    . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh
264    IGCM_FlushRebuild
265    #
266    IGCM_sys_Cd ${RUN_DIR}
267    # Clean Up
268    # local clean up
269    IGCM_sys_Rm -rf $( basename ${directory} )
270    # remote clean up
271    if [ ${RebuildFromArchive} = true ] ; then
272        IGCM_sys_RshArchive rm -rf ${directory}
273    else
274        IGCM_sys_RshMaster rm -rf ${directory}
275    fi
276done
277
278# Clean RUN_DIR_PATH (necessary for cesium only)
279IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
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