source: trunk/libIGCM/AA_atlas_PISCES @ 426

Last change on this file since 426 was 426, checked in by mmaipsl, 13 years ago

Add login shell path for platine jobs.
  • Property svn:keywords set to Revision Author Date
File size: 10.1 KB
Line 
1#-Q- cesium #!/bin/ksh
2#-Q- cesium ######################
3#-Q- cesium ## CESIUM   CEA ##
4#-Q- cesium ######################
5#-Q- cesium #MSUB -r ATL_PIS        # Nom du job               
6#-Q- cesium #MSUB -N 1              # Reservation du noeud
7#-Q- cesium #MSUB -n 1              # Reservation du processus
8#-Q- cesium #MSUB -T 86400          # Limite de temps elapsed du job
9#-Q- cesium #MSUB -E "-j o"
10#-Q- cesium #MSUB -E "-S /bin/ksh"
11#-Q- platine #!/usr/bin/ksh
12#-Q- platine ##################
13#-Q- platine ## PLATINE   CEA ##
14#-Q- platine ##################
15#-Q- platine #BSUB -J ATL_PIS           # Nom du job
16#-Q- platine #BSUB -N                   # message a la fin du job
17#-Q- platine #BSUB -n 1                 # reservation des processeurs pour le job
18#-Q- platine #BSUB -W 1:00              # Limite temps
19#-Q- platine #BSUB -q post              # Passage en queue post
20#-Q- platine #BSUB -L /bin/ksh
21#-Q- sx8brodie #!/bin/ksh
22#-Q- sx8brodie #######################
23#-Q- sx8brodie ## SX8BRODIE   IDRIS ##
24#-Q- sx8brodie #######################
25#-Q- sx8brodie # Temps Elapsed max. d'une requete hh:mm:ss
26#-Q- sx8brodie # @ wall_clock_limit = 10:00:00
27#-Q- sx8brodie # Nom du travail LoadLeveler
28#-Q- sx8brodie # @ job_name   = ATL_PIS
29#-Q- sx8brodie # Fichier de sortie standard du travail       
30#-Q- sx8brodie # @ output     = $(job_name).$(jobid)
31#-Q- sx8brodie # Fichier de sortie d'erreur du travail
32#-Q- sx8brodie # @ error      =  $(job_name).$(jobid)
33#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
34#-Q- sx8brodie # @ notification = error
35#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
36#-Q- sx8brodie # @ queue
37#-Q- aix6 #!/bin/ksh
38#-Q- aix6 #######################
39#-Q- aix6 ##   VARGAS   IDRIS  ##
40#-Q- aix6 #######################
41#-Q- aix6 # Temps Elapsed max. d'une requete hh:mm:ss
42#-Q- aix6 # @ wall_clock_limit = 10:00:00
43#-Q- aix6 # Nom du travail LoadLeveler
44#-Q- aix6 # @ job_name   = ATL_PIS
45#-Q- aix6 # Fichier de sortie standard du travail       
46#-Q- aix6 # @ output     = $(job_name).$(jobid)
47#-Q- aix6 # Fichier de sortie d'erreur du travail
48#-Q- aix6 # @ error      =  $(job_name).$(jobid)
49#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
50#-Q- aix6 # @ notification = error
51#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
52#-Q- aix6 # @ queue
53#-Q- ulam #!/bin/ksh
54#-Q- ulam #######################
55#-Q- ulam ##   ULAM   IDRIS  ##
56#-Q- ulam #######################
57#-Q- ulam # Temps Elapsed max. d'une requete hh:mm:ss
58#-Q- ulam # @ wall_clock_limit = 10:00:00
59#-Q- ulam # Nom du travail LoadLeveler
60#-Q- ulam # @ job_name   = ATL_PIS
61#-Q- ulam # Fichier de sortie standard du travail       
62#-Q- ulam # @ output     = $(job_name).$(jobid)
63#-Q- ulam # Fichier de sortie d'erreur du travail
64#-Q- ulam # @ error      =  $(job_name).$(jobid)
65#-Q- ulam # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.)
66#-Q- ulam # @ notification = error
67#-Q- ulam # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX
68#-Q- ulam # @ queue
69#-Q- sx8mercure #!/bin/ksh
70#-Q- sx8mercure ######################
71#-Q- sx8mercure ## SX8MERCURE   CEA ##
72#-Q- sx8mercure ######################
73#-Q- sx8mercure #PBS -N  ATL_PIS             # Nom du job
74#-Q- sx8mercure #PBS -j o                    # regroupement des stdout et stderr
75#-Q- sx8mercure #PBS -S /usr/bin/ksh         # shell de soumission
76#-Q- sx8mercure #PBS -l memsz_job=1gb        # Limite memoire a 1 Go
77#-Q- sx8mercure #PBS -l cputim_job=2:00:00   # Limite temps a 2 heures
78#-Q- sx8mercure #PBS -q scalaire
79#-Q- sx9mercure #!/bin/ksh
80#-Q- sx9mercure #########################
81#-Q- sx9mercure ## CESIUM FOR SX9  CEA ##
82#-Q- sx9mercure #########################
83#-Q- sx9mercure #MSUB -r ATL_PIS        # Nom du job               
84#-Q- sx9mercure #MSUB -N 1              # Reservation du noeud
85#-Q- sx9mercure #MSUB -n 1              # Reservation du processus
86#-Q- sx9mercure #MSUB -T 86400          # Limite de temps elapsed du job
87#-Q- sx9mercure #MSUB -E "-j o"
88#-Q- sx9mercure #MSUB -E "-S /bin/ksh"
89#-Q- titane #!/bin/ksh
90#-Q- titane ######################
91#-Q- titane ## TITANE   CEA ##
92#-Q- titane ######################
93#-Q- titane #MSUB -r ATL_PIS        # Nom du job               
94#-Q- titane #MSUB -N 1              # Reservation du noeud
95#-Q- titane #MSUB -n 1              # Reservation du processus
96#-Q- titane #MSUB -T 86400          # Limite de temps elapsed du job
97#-Q- titane #MSUB -E "-j o"
98#-Q- titane #MSUB -E "-S /bin/ksh"
99#-Q- titane ##MSUB -e nco.out        # Sortie standard
100#-Q- titane ##MSUB -o nco.out        # Sortie standard
101#-Q- default #!/bin/ksh
102#-Q- default ##################
103#-Q- default ## DEFAULT HOST ##
104#-Q- default ##################
105
106#**************************************************************
107# Author: Christian Ethe
108# Contact: Christian.Ethe__at__ipsl.jussieu.fr
109# $Revision::                                          $ Revision of last commit
110# $Author::                                            $ Author of last commit
111# $Date::                                              $ Date of last commit
112# IPSL (2006)
113#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
114#
115#**************************************************************
116
117#set -eu
118#set -vx
119
120date
121
122#-Q- sx8brodie export OMP_NUM_THREADS=1
123#-Q- aix6 export OMP_NUM_THREADS=1
124#-Q- ulam export OMP_NUM_THREADS=1
125
126########################################################################
127
128. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
129      ( ${DEBUG_debug} ) && IGCM_debug_Check
130. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
131     ( ${DEBUG_debug} ) && IGCM_card_Check
132. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
133     ( ${DEBUG_debug} ) && IGCM_date_Check
134#-------
135. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
136
137########################################################################
138
139#set -vx
140
141IGCM_sys_MkdirWork ${RUN_DIR_PATH}
142IGCM_sys_Cd ${RUN_DIR_PATH}
143
144if [ ${StandAlone} = true ] ; then
145    CARD_DIR=${SUBMIT_DIR}
146else
147    CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} )
148    IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH}
149fi
150#
151# First of all
152#
153IGCM_card_DefineArrayFromSection       ${CARD_DIR}/config.card UserChoices
154typeset option
155for option in ${config_UserChoices[*]} ; do
156    IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option}
157done
158
159#
160echo
161IGCM_debug_Print 1 "DefineArrayFromOption  : config_UserChoices"
162IGCM_debug_PrintVariables 3 config_UserChoices_JobName
163IGCM_debug_PrintVariables 3 config_UserChoices_LongName
164IGCM_debug_PrintVariables 3 config_UserChoices_TagName
165IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
166IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
167IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
168IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
169IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
170IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
171echo
172
173#==================================
174#R_SAVE : Job output directory
175if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
176    FreeName=$( echo ${config_UserChoices_JobName} | sed 's/.*_//' )
177    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
178    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
179else
180    R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
181    R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
182fi
183#
184
185R_ATLAS=ATLAS/SE_${YEARS}
186R_OUT_MBG=${R_SAVE}/MBG
187DIR_OUT=${DIR_OUT:=SE}
188
189RUN_DIR=${RUN_DIR_PATH}/ATLAS_PISCES_${YEARS}
190IGCM_sys_MkdirWork ${RUN_DIR}
191IGCM_sys_Cd ${RUN_DIR}
192
193# --------------------------------------------
194# Insert your commands between III...III lines
195# and precise produced directories to save
196# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
197
198IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc  ${RUN_DIR}
199IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc  ${RUN_DIR}
200
201atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_T -l ${FER_ATLAS}/atlas_p_PISCES_diag1_*.cfg  \
202                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_a.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
203atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_F -l ${FER_ATLAS}/atlas_p_PISCES_diag2_a.cfg  \
204                                        ${FER_ATLAS}/atlas_p_PISCES_diag0_b.cfg  ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
205
206# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
207
208# Put ferret journal files together
209for file in $( ls ${R_ATLAS}/MBG_T/*/*jnl ) ; do
210    echo -e "\n\n################################" ;
211    echo -e "$file\n" ; cat $file ;
212done  > ${R_ATLAS}/MBG_T/allferretscript.txt
213
214for file in $( ls ${R_ATLAS}/MBG_F/*/*jnl ) ; do
215    echo -e "\n\n################################" ;
216    echo -e "$file\n" ; cat $file ;
217done  > ${R_ATLAS}/MBG_F/allferretscript.txt
218# Clear some files
219find . \( -name "*.stdout" -o -name "*.jnl" \) -print -exec rm -f {} \;
220
221# Save files
222IGCM_sys_Put_Dir ATLAS ${R_SAVE}
223
224IGCM_sys_Rm -Rf ATLAS
225IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc
226IGCM_sys_Rm ${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc
227
228# DODS copy
229IGCM_sys_TestDirArchive ${R_SAVE}/${R_ATLAS}
230[ $? = 0 ] && IGCM_sys_Put_Dods ${R_ATLAS}
231
232# Clean RUN_DIR_PATH (necessary for cesium)
233IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}
Note: See TracBrowser for help on using the repository browser.