Context Navigation

source: trunk/libIGCM/libIGCM_config/libIGCM_config.ksh @ 398

Last change on this file since 398 was 398, checked in by sdipsl, 13 years ago
Minor bugfix : Script_Output cleaning in the SUBMIT_DIR was not working
Property licence set to The following licence information concerns ONLY the libIGCM tools ================================================================== Copyright © Centre National de la Recherche Scientifique CNRS Commissariat à l'Énergie Atomique CEA libIGCM : Library for Portable Models Computation of IGCM Group. IGCM Group is the french IPSL Global Climate Model Group. This library is a set of shell scripts and functions whose purpose is the management of the initialization, the launch, the transfer of output files, the post-processing and the monitoring of datas produce by any numerical program on any plateforme. This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. Property svn:keywords set to `Revision Author Date`
File size: 31.1 KB

Line
1	#!/bin/ksh
2
3	#**************************************************************
4	# Author: Sebastien Denvil, Martial Mancip
5	# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr Martial.Mancip__at__ipsl.jussieu.fr
6	# $Revision:: $ Revision of last commit
7	# $Author:: $ Author of last commit
8	# $Date:: $ Date of last commit
9	# IPSL (2006)
10	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
11	#
12	#**************************************************************
13
14	#===================================
15	function IGCM_config_Initialize
16	{
17	IGCM_debug_PushStack "IGCM_config_Initialize"
18
19	# Debug Print :
20	echo
21	IGCM_debug_Print 1 "IGCM_config_Initialize :"
22	echo
23
24	# Test modipsl tree existence.
25	IGCM_sys_TestDir ${MODIPSL}
26	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
27	IGCM_sys_TestDir ${libIGCM}
28	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
29	IGCM_sys_TestDir ${R_EXE}
30	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
31	IGCM_sys_TestDir ${SUBMIT_DIR}
32	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
33
34	if ( $DEBUG_debug ) ; then
35	echo "Keep trace of inital SUBMIT_DIR : "
36	ls -lta ${SUBMIT_DIR}
37	fi
38
39	#==================================
40
41	typeset option auxprint CompatibilityTag
42	# Read libIGCM compatibility version in config.card
43	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Compatibility libIGCM
44	eval CompatibilityTag=${config_Compatibility_libIGCM} > /dev/null 2>&1
45
46	if [ ! "${CompatibilityTag}" = "${libIGCM_CurrentTag}" ] ; then
47	IGCM_debug_Exit "config.card is not compatible with libIGCM version ${libIGCM_CurrentTag} see libIGCM FAQ http://wiki.ipsl.jussieu.fr/wiki_ipsl/IGCMG/libIGCM/DocUtilisateur/FAQ ."
48	fi
49
50	#==================================
51	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card UserChoices
52
53	for option in ${config_UserChoices[*]} ; do
54	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card UserChoices ${option}
55	done
56
57	IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices"
58	# Name Space of this experience
59	if [ X${config_UserChoices_SpaceName} != X ] ; then
60	IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
61	fi
62	# Expericence class of the run
63	if [ X${config_UserChoices_ExperimentName} != X ] ; then
64	IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
65	fi
66	IGCM_debug_PrintVariables 3 config_UserChoices_JobName
67	if [ 3 -le ${Verbosity} ] ; then
68	echo "--------------Debug3-->" "config_UserChoices_LongName="
69	echo "--------------Debug3-->" \"${config_UserChoices_LongName}\"
70	fi
71	IGCM_debug_PrintVariables 3 config_UserChoices_TagName
72	IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
73	IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
74	IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
75	IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
76
77	#==================================
78
79	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card ListOfComponents
80
81	echo
82	IGCM_debug_Print 1 "DefineArrayFromSection : ListOfComponents"
83	IGCM_debug_Print 3 ${config_ListOfComponents[*]}
84	echo
85
86	NbComponents=${#config_ListOfComponents[*]}
87
88	#==================================
89	# Define principal executable
90
91	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Executable
92	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Executable Name
93
94	#==================================
95	# Define Outputs Name
96	IGCM_debug_Print 1 "Define Script_Output_Prefix and Exe_Output"
97	eval Script_Output_Prefix=${config_UserChoices_Script_Output_Prefix:='Script_Output'}
98	IGCM_debug_Print 3 "Script_Output_Prefix = ${Script_Output_Prefix}"
99	eval Exe_Output=out_${config_Executable_Name}
100	IGCM_debug_Print 3 "Exe_Output = ${Exe_Output}"
101
102	#==================================
103
104	#===================================================================#
105	# Prepare variables available for ${COMP}.card and ${COMP}.driver #
106	# But available to any son functions #
107	#===================================================================#
108
109	# Convert yyyy-mm-dd date to gregorian yyyymmdd
110	DateBegin=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )
111	DateEnd=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )
112
113	# Period Length In Days between DateBegin and DateEnd
114	(( ExperienceLengthInDays=$( IGCM_date_DaysBetweenGregorianDate ${DateEnd} ${DateBegin} ) + 1 ))
115	if [ ${ExperienceLengthInDays} -lt 0 ] ; then
116	IGCM_debug_Print 1 "Problem with dates in config.card : ${DateEnd} < ${DateBegin} ! You must check that."
117	IGCM_debug_Exit "IGCM_config_Initialize" " Wrong Dates."
118	IGCM_debug_Verif_Exit
119	fi
120
121	# Day and Year of Initial State (Given in julian format)
122	InitDay=$(( $( IGCM_date_ConvertGregorianDateToJulian $DateBegin ) % 1000 ))
123	InitYear=$(( $( IGCM_date_ConvertGregorianDateToJulian $DateBegin ) / 1000 ))
124
125	#==================================
126	# Restarts : Gerneral rule or local for each component ?
127	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Restarts
128
129	echo
130	IGCM_debug_Print 1 "DefineArrayFromOption : config_Restarts"
131
132	for option in ${config_Restarts[*]} ; do
133	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Restarts ${option}
134	eval auxprint=\${config_Restarts_${option}}
135	IGCM_debug_Print 3 "${option} : ${auxprint}"
136	done
137
138	#================================================================#
139	# Test and Prepare directories #
140	#================================================================#
141
142	# ==> 4 kinds of input files :
143	# 1) R_INIT : Initial State Files (Etat0, carteveg)
144	# 2) R_BC : Boundary Conditions (Forcages, lai)
145	# 3) Parameters files (allready define through ${SUBMIT_DIR})
146	# 4) Restarts files (allready define in IGCM_config_Initialize)
147
148	# Here we offer the possibility to redefine R_INIT, R_BC
149	# and PeriodNb through config.card
150	R_INIT=${config_UserChoices_R_INIT:=${R_IN}/INIT}
151	echo
152	IGCM_debug_Print 1 "(Re)Define R_INIT, R_BC and PeriodNb"
153	IGCM_debug_Print 3 "R_INIT=${R_INIT}"
154	R_BC=${config_UserChoices_R_BC:=${R_IN}/BC}
155	IGCM_debug_Print 3 "R_BC=${R_BC}"
156	PeriodNb=${config_UserChoices_PeriodNb:=${PeriodNb}}
157	IGCM_debug_Print 3 "Loop in main Job with ${PeriodNb} period(s)"
158
159	# Test Archive input/output.
160	IGCM_sys_TestDirArchive ${ARCHIVE}
161	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
162	IGCM_sys_TestDirArchive ${R_IN}
163	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
164
165	#====================================================
166	#R_SAVE : Job output directory
167	if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
168	FreeName=$( echo ${config_UserChoices_JobName} \| sed 's/.*_//' )
169	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
170	R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
171	else
172	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
173	R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
174	fi
175
176	if [ ! -f ${SUBMIT_DIR}/run.card ]; then
177	IGCM_sys_MkdirArchive ${R_SAVE}
178	else
179	#Test state of run in run.card
180	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState
181	if ( [ ${run_Configuration_PeriodState} != "Start" ] && [ ${run_Configuration_PeriodState} != "Running" ] && [ ${run_Configuration_PeriodState} != "OnQueue" ] && [ ${run_Configuration_PeriodState} != "Continue" ] ) ; then
182	echo
183	IGCM_debug_Print 1 "!!!! IGCM_config_Initialize Error PeriodState : " ${run_Configuration_PeriodState} "!!!!!!!!!!"
184	echo
185	IGCM_debug_Exit "IGCM_config_Initialize Error PeriodState : " ${run_Configuration_PeriodState}
186	IGCM_debug_Verif_Exit
187	fi
188	fi
189	IGCM_sys_TestDirArchive ${R_SAVE}
190	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
191
192	#==================================
193	# Post :
194	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Post
195
196	echo
197	IGCM_debug_Print 1 "DefineArrayFromOption : config_Post"
198
199	for option in ${config_Post[*]} ; do
200	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Post ${option}
201	eval auxprint=\${config_Post_${option}}
202	IGCM_debug_Print 3 "${option} : ${auxprint}"
203	done
204
205	#====================================================
206	# Define REBUILD_DIR : where we store files needing rebuild process
207	if [ X${config_Post_RebuildFromArchive} = Xtrue ] ; then
208	REBUILD_DIR=${R_SAVE}/TMP
209	IGCM_sys_MkdirArchive ${REBUILD_DIR}
210	else
211	REBUILD_DIR=${BIG_DIR}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
212	IGCM_sys_MkdirWork ${REBUILD_DIR}
213	fi
214
215	#====================================================
216	# Experience type : DEB(ug), DEV(elopment), RUN
217	if [ X${JobType} != XRUN ] ; then
218	echo
219	echo "===================================================="
220	echo "libIGCM JOB is NOT in RUN type mode."
221	echo "!! OUTPUT files will NOT be PROTECTED !!"
222	echo "Be carefull : you can ERASE the result of this job !"
223
224	case ${JobType} in
225	DEB)
226	echo "DEBUG mode : activation of 'set -vx' mode."
227	echo "DEBUG mode : no protection for output files."
228	echo "DEBUG mode : if active force asynchronous rebuild frequency to PeriodLength frequency."
229	;;
230	DEV)
231	echo "DEVelopment mode : no protection for output files."
232	echo "DEVelopment mode : if active force asynchronous rebuild frequency to PeriodLength frequency."
233	;;
234	esac
235
236	if [ X${config_Post_RebuildFrequency} != XNONE ] ; then
237	if [ X${config_Post_RebuildFrequency} != X${config_UserChoices_PeriodLength} ] ; then
238	echo "------------"
239	echo "WARNING : Job is NOT in RUN mode then we will force REBUILD Frequency"
240	echo " to PeriodLength : ${config_UserChoices_PeriodLength}"
241	echo "------------"
242	config_Post_RebuildFrequency=${config_UserChoices_PeriodLength}
243	fi
244	fi
245	echo "===================================================="
246	echo
247	fi
248
249	#====================================================
250	#R_OUT_KSH : Storage place for job output
251	#R_OUT_EXE : Storage place for binary used during simulation
252	R_OUT_KSH=${R_SAVE}/Out
253	R_OUT_EXE=${R_SAVE}/Exe
254
255	IGCM_debug_PopStack "IGCM_config_Initialize"
256	}
257
258	#===================================
259	function IGCM_config_Analyse_PeriodLength
260	{
261	IGCM_debug_PushStack "IGCM_config_Analyse_PeriodLength"
262
263	typeset i
264
265	# Determine number of day(s) in PeriodLength :
266	case ${config_UserChoices_PeriodLength} in
267	Y\|y)
268	PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} \| sed -e 's/[yY]//' )
269	IGCM_debug_Print 1 "Number of years for PeriodLength : ${PeriodLengthInYears}"
270	PeriodLengthInDays=0
271	i=0
272	until [ $i -ge $PeriodLengthInYears ] ; do
273	(( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInYear $(( year + i )) ) ))
274	(( i=i+1 ))
275	done
276	;;
277	M\|m)
278	PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} \| sed -e 's/[mM]//' )
279	IGCM_debug_Print 1 "Number of months for PeriodLength : ${PeriodLengthInMonths}"
280	PeriodLengthInDays=0
281	i=0
282	until [ $i -ge $PeriodLengthInMonths ] ; do
283	if [ $(( month + i )) -lt 13 ] ; then
284	(( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( month + i )) ) ))
285	else
286	(( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( month + i - 12 )) ) ))
287	fi
288	(( i=i+1 ))
289	done
290	;;
291	D\|d)
292	PeriodLengthInMonths=0
293	PeriodLengthInDays=$( echo ${config_UserChoices_PeriodLength} \| sed -e 's/[dD]//' );;
294	*)
295	IGCM_debug_Exit "IGCM_config_Analyse_PeriodLength " ${config_UserChoices_PeriodLength} " invalid period length : choose in Y, M, *D."
296	IGCM_debug_Verif_Exit ;;
297	esac
298
299	IGCM_debug_PopStack "IGCM_config_Analyse_PeriodLength"
300	}
301
302	#===================================
303	function IGCM_config_Check
304	{
305	IGCM_debug_PushStack "IGCM_config_Check"
306
307	# If one of the following modulo is not zero :
308	# we will issue an error then explain and exit in
309	# AA_job IGCM_debug_Verif_Exit call before binary submission
310
311	echo
312	IGCM_debug_Print 1 "IGCM_config_Check :"
313	echo
314
315	typeset i
316
317	if ( [ ! X${config_Post_RebuildFrequency} = X${NULL_STR} ] \|\| [ ! X${config_Post_RebuildFrequency} = XNONE ] ) ; then
318	AsynchronousRebuild=true
319	IGCM_debug_Print 1 "Asynchronous rebuild has been activated."
320	echo
321	# modulo (RebuildFrequency and PeriodLength/TimeSeriesFrequency/SeasonalFrequency) must be zero
322	IGCM_post_CheckModuloFrequency config_Post_RebuildFrequency config_UserChoices_PeriodLength
323	IGCM_post_CheckModuloFrequency config_Post_TimeSeriesFrequency config_Post_RebuildFrequency
324	IGCM_post_CheckModuloFrequency config_Post_SeasonalFrequency config_Post_RebuildFrequency
325	else
326	AsynchronousRebuild=false
327	IGCM_debug_Print 1 "Asynchronous rebuild has not been activated"
328	IGCM_debug_Print 1 "Proceed with standard post-treatment pathway"
329	echo
330	#modulo (TimeSeriesFrequency/SeasonalFrequency and PeriodLenght) must be zero
331	IGCM_post_CheckModuloFrequency config_Post_TimeSeriesFrequency config_UserChoices_PeriodLength
332	IGCM_post_CheckModuloFrequency config_Post_SeasonalFrequency config_UserChoices_PeriodLength
333	fi
334
335	#modulo (TimeSeriesFrequency and all Chunck2D) must be zero
336	NbJob=${#CHUNCK2D_SIZE[@]}
337	i=0
338	until [ $i -ge $NbJob ]; do
339	value=${CHUNCK2D_SIZE[${i}]}
340	IGCM_post_CheckModuloFrequency value config_Post_TimeSeriesFrequency
341	(( i=i+1 ))
342	done
343
344	#modulo (TimeSeriesFrequency and all Chunck3D) must be zero
345	NbJob=${#CHUNCK3D_SIZE[@]}
346	i=0
347	until [ $i -ge $NbJob ]; do
348	value=${CHUNCK3D_SIZE[${i}]}
349	IGCM_post_CheckModuloFrequency value config_Post_TimeSeriesFrequency
350	(( i=i+1 ))
351	done
352
353	IGCM_debug_PopStack "IGCM_config_Check"
354	}
355
356	#===================================
357	function IGCM_config_PeriodStart
358	{
359	IGCM_debug_PushStack "IGCM_config_PeriodStart"
360
361	echo
362	IGCM_debug_Print 1 "IGCM_config_PeriodStart :"
363	echo
364
365	if [ ! -r ${SUBMIT_DIR}/run.card ]; then
366
367	#================================================#
368	# The file run.card doesn't exist #
369	#================================================#
370
371	eval FirstInitialize=true
372
373	#copy initial run.card
374	IGCM_sys_Cp ${SUBMIT_DIR}/run.card.init ${SUBMIT_DIR}/run.card
375
376	IGCM_date_GetYearMonth $DateBegin year month
377	year_m1=$(( year - 1 ))
378	year_p1=$(( year + 1 ))
379	IGCM_config_Analyse_PeriodLength
380
381	eval PeriodDateBegin=${DateBegin} > /dev/null 2>&1
382	PeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( ${PeriodLengthInDays} - 1 )) )
383	eval CumulPeriod=1 > /dev/null 2>&1
384
385	#=================================================#
386	# Creation and write updated run.card #
387	#=================================================#
388
389	#Correct run.card Configuration for this period
390	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin ${PeriodDateBegin}
391	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd ${PeriodDateEnd}
392	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod ${CumulPeriod}
393	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Running"
394
395	else
396	#================================================#
397	# The file run.card allready exist #
398	#================================================#
399
400	eval FirstInitialize=false
401
402	#Test state of run in run.card
403	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState
404	if ( [ ${run_Configuration_PeriodState} != "Running" ] && [ ${run_Configuration_PeriodState} != "OnQueue" ] && [ ${run_Configuration_PeriodState} != "Continue" ] ) ; then
405	echo
406	IGCM_debug_Print 1 "!!!!!! IGCM_config_PeriodStart Error PeriodState : " ${run_Configuration_PeriodState} "!!!!!!!!!!"
407	echo
408	IGCM_debug_Exit "IGCM_config_PeriodStart Error PeriodState : " ${run_Configuration_PeriodState}
409	IGCM_debug_Verif_Exit
410	fi
411
412	#===================================#
413	# Read updated run.card #
414	#===================================#
415
416	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration OldPrefix
417	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin
418	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd
419	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod
420
421	PeriodDateBegin=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateBegin} )
422	PeriodDateEnd=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateEnd} )
423	eval CumulPeriod="${run_Configuration_CumulPeriod}" > /dev/null 2>&1
424
425	if [ ${Period} = 1 ]; then
426	# save last Job output
427	typeset LastPeriod iLastPeriod Last_Script_Output_Name
428	(( LastPeriod=CumulPeriod-PeriodNb ))
429	iLastPeriod=$( printf "%06d" ${LastPeriod} )
430	Last_Script_Output_Name="${Script_Output_Prefix}_${config_UserChoices_JobName}.${iLastPeriod}"
431	Last_run_card="run.card.${iLastPeriod}"
432	#eval ls -l ${SUBMIT_DIR}/${Last_Script_Output_Name}
433	#eval IGCM_sys_Put_Out ${SUBMIT_DIR}/${Last_Script_Output_Name} ${R_OUT_KSH}/${Last_Script_Output_Name} > /dev/null 2>&1
434	IGCM_debug_Print 1 "Try to save previous ksh job output"
435	IGCM_sys_Cd ${SUBMIT_DIR}/
436	IGCM_sys_Put_Out ${Last_Script_Output_Name} ${R_OUT_KSH}/${Last_Script_Output_Name}.$$ rw
437	IGCM_sys_Put_Out ${SUBMIT_DIR}/run.card ${R_OUT_KSH}/${Last_run_card}.$$ rw
438	IGCM_sys_Cd ${RUN_DIR}
439	else
440	unset FileToBeDeleted
441	fi
442
443	IGCM_date_GetYearMonth $PeriodDateBegin year month
444	year_m1=$(( year - 1 ))
445	year_p1=$(( year + 1 ))
446	IGCM_config_Analyse_PeriodLength
447
448	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Running"
449
450	fi
451	OldPrefix=${config_UserChoices_JobName}_${PeriodDateEnd}
452
453	#===================================================================#
454	# Prepare variables available for ${COMP}.card and ${COMP}.driver #
455	# But available to any son functions #
456	#===================================================================#
457
458	# Period Length In Days between DateBegin and DateCurrent (at end of period == PeriodDateEnd !)
459	(( SimulationLengthInDays = $( IGCM_date_DaysBetweenGregorianDate ${PeriodDateEnd} ${DateBegin} ) + 1 ))
460
461	# Debug Print :
462	IGCM_debug_Print 1 "IGCM_config_PeriodStart : Before Execution"
463	IGCM_debug_Print 3 "Year of simulation : ${year}"
464	IGCM_debug_Print 3 "Month of simulation : ${month}"
465	IGCM_debug_Print 3 "PeriodLengthInDays : ${PeriodLengthInDays}"
466	IGCM_debug_Print 3 "PeriodDateBegin : ${PeriodDateBegin}"
467	IGCM_debug_Print 3 "PeriodDateEnd : ${PeriodDateEnd}"
468	IGCM_debug_Print 3 "SimulationLengthInDays : ${SimulationLengthInDays}"
469	IGCM_debug_Print 3 "ExperienceLengthInDays : ${ExperienceLengthInDays}"
470
471	#================================================================#
472	# Prepare variables available for comp_finalyze #
473	#================================================================#
474
475	# Period for save files
476	eval DatesPeriod=${PeriodDateBegin}_${PeriodDateEnd} > /dev/null 2>&1
477
478	# Prefix for save files of this period
479	eval PREFIX=${config_UserChoices_JobName}_${DatesPeriod} > /dev/null 2>&1
480
481	# List of files that will be deleted in RUN_DIR after run
482	[ -f stack ] && FileToBeDeleted[0]="stack"
483
484	# Test if the same run as already been saved :
485	if [ X${JobType} = XRUN ] ; then
486	if [ ${DRYRUN} -le 0 ] ; then
487	if ( IGCM_sys_TestFileArchive ${R_OUT_KSH}/${PREFIX}_${Exe_Output} ) ; then
488	IGCM_debug_Exit "IGCM_config_PeriodStart" "You are currently RErunning an old job."
489	IGCM_debug_Print 1 "Because of readonly permissions, you can't RErun a job when saved files"
490	IGCM_debug_Print 1 " are still in the ARCHIVE directory. You must deleted those files, or "
491	IGCM_debug_Print 1 " the whole ${R_SAVE} tree. See clean_month.job in ${libIGCM} directory."
492	IGCM_debug_Print 1 " This exit has been initiated because at least ${R_OUT_KSH}/${PREFIX}_${Exe_Output} exists."
493	IGCM_debug_Verif_Exit
494	fi
495	fi
496	else
497	if ( IGCM_sys_TestFileArchive ${R_OUT_KSH}/${PREFIX}_${Exe_Output} ) ; then
498	IGCM_debug_Print 1 "IGCM_config_PeriodStart" "RErun an old job. DEBUG of DEV mode."
499	fi
500	fi
501
502	IGCM_debug_PopStack "IGCM_config_PeriodStart"
503	}
504
505	#===================================
506	function IGCM_config_PeriodEnd
507	{
508	IGCM_debug_PushStack "IGCM_config_PeriodEnd"
509
510	echo
511	IGCM_debug_Print 1 "IGCM_config_PeriodEnd :"
512	echo
513
514	#==================================#
515	# Save Job output #
516	#==================================#
517	IGCM_sys_Put_Out ${Exe_Output} ${R_OUT_KSH}/${PREFIX}_${Exe_Output}
518	eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${Exe_Output}"
519
520	IGCM_sys_Put_Out ${SUBMIT_DIR}/run.card ${R_OUT_KSH}/run.card rw
521
522	typeset LS_comp LS_bin ExeDate ExeCpuLog ExeSize NextExeSize LastCompExeSize
523	typeset comp i
524	typeset ExeNameIn ExeNameOut
525
526	#==================================#
527	# Get last Exe Size #
528	#==================================#
529
530	if [ ${DRYRUN} -le 1 ] ; then
531	(( i=0 ))
532	if ( ${FirstInitialize} ) ; then
533	run_Log_LastExeSize=""
534	for comp in ${config_ListOfComponents[*]} ; do
535	run_Log_LastExeSize[$i]=0
536	(( i=i+1 ))
537	done
538	else
539	IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/run.card Log LastExeSize
540	fi
541	fi
542	#==================================#
543	# And Build ExeDate #
544	#==================================#
545
546	# ExeDate = ATM_Jun_12_09:34-SRF_Jun_12_09:34-OCE_Jun_12_09:34-ICE_Jun_12_09:34-CPL_Jun_12_09:33
547	# Would be nice to have next line but no way to format ls output (need to ls -l --time-style "+%Y-%m-%dT%H:%M")
548	# ExeDate = ATM_2009-06-12T09:34+SRF_2009-06-12T09:34+OCE_2009-06-12T09:34+ICE_2009-06-12T09:34+CPL_2009-06-12T09:34
549	ExeDate=""
550	NextExeSize="( "
551	(( i=0 ))
552
553	for comp in ${config_ListOfComponents[*]} ; do
554
555	IGCM_debug_Print 1 ${comp}
556
557	eval ExeNameIn=\${config_Executable_${comp}[0]}
558	eval ExeNameOut=\${config_Executable_${comp}[1]}
559	# Only if we really have an executable for the component :
560	if [ X${ExeNameIn} = X\"\" ] ; then
561	# If there is no exe file for this component
562	(( ExeSize=0 ))
563	else
564	eval LS_bin=${R_EXE}/${ExeNameIn}
565	IGCM_sys_FileSize ${LS_bin} ExeSize
566
567	set +A LS_comp -- $( LC_TIME=en_US ls -l ${LS_bin} )
568	if [ X${ExeDate} = X ] ; then
569	# First component exe date
570	ExeDate=${comp}_${LS_comp[5]}_${LS_comp[6]}
571	else
572	ExeDate=${ExeDate}-${comp}_${LS_comp[5]}_${LS_comp[6]}
573	fi
574	ExeDate=${ExeDate}_${LS_comp[7]}
575	fi
576
577	if [ ${i} -eq 0 ] ; then
578	# First component
579	NextExeSize="( "${ExeSize}
580	else
581	NextExeSize=${NextExeSize}", "${ExeSize}
582	fi
583	eval LastCompExeSize=${run_Log_LastExeSize[$i]}
584	(( i=i+1 ))
585
586	if [ ${DRYRUN} -le 1 ] ; then
587	if [ ${ExeSize} -ne ${LastCompExeSize} ] ; then
588	if ( ${FirstInitialize} ) ; then
589	IGCM_debug_Print 1 "Put first ${ExeNameIn} in ${R_OUT_EXE} !"
590	else
591	IGCM_debug_Print 1 "${ExeNameIn} has changed in ${R_EXE} !"
592	eval FileToBeDeleted[${#FileToBeDeleted[@]}]=${ExeNameOut}
593	fi
594	eval IGCM_sys_Put_Out ${ExeNameOut} ${R_OUT_EXE}/${PREFIX}_${ExeNameIn} rw
595	fi
596	fi
597	done
598
599	if [ ${DRYRUN} -le 1 ] ; then
600	tail -1500 ${Exe_Output} > ${Exe_Output}_tail.txt
601	ExeCpuLog=$( gawk -f ${libIGCM}/libIGCM_sys/IGCM_add_out.awk ${Exe_Output}_tail.txt )
602	RET=$?
603	if [ $RET -eq 0 ] ; then
604	# ExeCpuLog variable contents 5 fields
605	echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${ExeCpuLog} ${ExeDate}" \| \
606	gawk '{printf("# %11d \| %15s \| %15s \| %19s \| %19s \| %15.5f \| %15.5f \| %15.5f \| %s\n", \
607	$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/run.card
608	fi
609	eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${Exe_Output}_tail.txt"
610	fi
611
612	NextExeSize=${NextExeSize}" )"
613	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Log LastExeSize "${NextExeSize}"
614
615	# All was right ? no ? then we stop.
616	IGCM_debug_Verif_Exit
617
618	# If all was OK, we can delete all files not necessary for next Job
619	IGCM_debug_Print 1 "Files that will be deleted before next period-run : "
620
621	if [ ${DRYRUN} -le 2 ] ; then
622	for f in ${FileToBeDeleted[@]} ; do [ -f ${f} ] && ls -la $f ; [ -f ${f} ] && rm -f $f ; done
623	else
624	echo ${FileToBeDeleted[@]}
625	fi
626
627	#=================================================#
628	# Modification of libIGCM behaviour #
629	#=================================================#
630
631	# To use this function, one must copy libIGCM.card from ${libIGCM} directory
632	# and put it in ${SUBMIT_DIR} directory. Ater modifications of ${SUBMIT_DIR}/libIGCM.card,
633	# variables define inside [UserChanges] will be modified for next Period of libIGCM main loop.
634	if [ -f ${SUBMIT_DIR}/libIGCM.card ] ; then
635	echo
636	echo "########################################################################"
637	echo "!!! Modification of libIGCM behaviour !!!"
638	echo
639
640	IGCM_debug_Print 1 "DefineArrayFromOption : libIGCM_UserChanges in libIGCM.card"
641	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/libIGCM.card UserChanges
642	IGCM_debug_Print 2 "libIGCM_UserChanges" ${libIGCM_UserChanges[*]}
643
644	# Special treatments for libIGCM internals
645	for option in ${libIGCM_UserChanges[*]} ; do
646	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/libIGCM.card UserChanges ${option}
647
648	echo "We will change : ${option}."
649	eval echo "Previous value : " \${${option}}
650	eval echo "Change to : " \${libIGCM_UserChanges_${option}}
651
652	eval ${option}=\${libIGCM_UserChanges_${option}}
653
654	case ${option} in
655	config_UserChoices_DateEnd)
656	IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
657	DateEnd=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )
658
659	# Period Length In Days between DateBegin and DateEnd
660	(( ExperienceLengthInDays=$( IGCM_date_DaysBetweenGregorianDate ${DateEnd} ${DateBegin} ) + 1 ))
661	if [ ${ExperienceLengthInDays} -lt 0 ] ; then
662	IGCM_debug_Print 1 "Problem with dates in libIGCM.card : ${DateEnd} < ${DateBegin} ! You must check that."
663	IGCM_debug_Exit "IGCM_PeriodEnd" " Wrong Dates."
664	IGCM_debug_Verif_Exit
665	fi
666	;;
667	config_UserChoices_PeriodLength)
668	;;
669	PeriodNb)
670	IGCM_debug_Print 3 "Loop in main Job with ${PeriodNb} period(s)"
671	;;
672	config_Post_RebuildFrequency)
673	IGCM_debug_Print 3 "Change config_Post_RebuildFrequency=${config_Post_RebuildFrequency} : IGCM_post_Configure"
674	IGCM_post_Configure
675	;;
676	config_Post_TimeSeriesFrequency)
677	IGCM_debug_Print 3 "Change config_Post_TimeSeriesFrequency = ${config_Post_TimeSeriesFrequency} : IGCM_post_Initialize"
678	IGCM_post_Configure
679	;;
680	config_Post_SeasonalFrequency)
681	IGCM_debug_Print 3 "Change config_Post_SeasonalFrequency = ${config_Post_SeasonalFrequency} : IGCM_post_Initialize"
682	IGCM_post_Configure
683	;;
684	esac
685	done
686
687	echo
688	echo "########################################################################"
689	echo
690	fi
691
692	#=================================================#
693	# Determine next computed period #
694	#=================================================#
695
696	PeriodDateBegin=$( IGCM_date_AddDaysToGregorianDate ${PeriodDateEnd} 1 )
697	IGCM_date_GetYearMonth $PeriodDateBegin year month
698	year_m1=$(( year - 1 ))
699	year_p1=$(( year + 1 ))
700	IGCM_config_Analyse_PeriodLength
701	PeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate ${PeriodDateBegin} $(( ${PeriodLengthInDays} - 1 )) )
702
703	# Debug Print :
704	echo
705	IGCM_debug_Print 1 "IGCM_config_PeriodEnd : Preparing Next Execution"
706	IGCM_debug_Print 3 "PeriodDateBegin : ${PeriodDateBegin}"
707	IGCM_debug_Print 3 "PeriodDateEnd : ${PeriodDateEnd}"
708	IGCM_debug_Print 3 "PeriodLengthInDays : ${PeriodLengthInDays}"
709
710	PeriodDateBegin=$( IGCM_date_ConvertFormatToHuman ${PeriodDateBegin} )
711	PeriodDateEnd=$( IGCM_date_ConvertFormatToHuman ${PeriodDateEnd} )
712
713	(( CumulPeriod = CumulPeriod + 1 ))
714
715	# Debug Print :
716	echo
717	IGCM_debug_Print 3 "PeriodDateBegin Human : ${PeriodDateBegin}"
718	IGCM_debug_Print 3 "PeriodDateEnd Human : ${PeriodDateEnd}"
719	IGCM_debug_Print 3 "CumulPeriod : ${CumulPeriod}"
720
721	#=================================================#
722	# Write updated run.card #
723	#=================================================#
724
725	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration OldPrefix ${OldPrefix}
726	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin ${PeriodDateBegin}
727	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd ${PeriodDateEnd}
728	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod ${CumulPeriod}
729
730	IGCM_debug_PopStack "IGCM_config_PeriodEnd"
731	}
732
733	#===================================
734	function IGCM_config_Finalize
735	{
736	IGCM_debug_PushStack "IGCM_config_Finalize"
737
738	echo
739	IGCM_debug_Print 1 "IGCM_config_Finalize :"
740	echo
741
742	if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then
743	#==========================#
744	# End of entire simulation #
745	#==========================#
746
747	# Mail notification
748	IGCM_sys_SendMail
749
750	#
751	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Completed"
752	IGCM_debug_Print 1 "Normal End of computation."
753	if ( $DEBUG_debug ) ; then
754	echo
755	IGCM_debug_Print 1 "Your files on ${R_OUT} :"
756	IGCM_sys_Tree ${R_SAVE}
757	fi
758	else
759	#=================#
760	# Submit next job #
761	#=================#
762
763	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "OnQueue"
764
765	# Name of next Ksh Script output :
766	eval Script_Output="${Script_Output_Prefix}_${config_UserChoices_JobName}.$( printf "%06d" ${CumulPeriod} )"
767
768	IGCM_debug_Print 1 "Submit next job"
769	# SUBMIT NEXT JOB from SUBMIT_DIR and come back in RUN_DIR
770	IGCM_sys_Cd ${SUBMIT_DIR}
771	# Keep only the 5 latest ${Script_Output_Prefix}_${config_UserChoices_JobName}
772	ScriptTot=$( ls ${Script_Output_Prefix}_${config_UserChoices_JobName}.?????? 2>/dev/null \| wc -l )
773	[ ${ScriptTot} -gt 5 ] && rm -f $( ls ${Script_Output_Prefix}_${config_UserChoices_JobName}.?????? \| head -$(( ${ScriptTot} - 5 )) )
774	# Submit next job and come back
775	IGCM_sys_Qsub ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}
776	IGCM_sys_Cd -
777	fi
778
779	# Supress Non Deleted Boundary files
780	if [ ${DRYRUN} -le 2 ] ; then
781	IGCM_comp_DelFixeBoundaryFiles
782	ls -la
783	fi
784
785	# Clean ${RUN_DIR}=${RUN_DIR_PATH}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
786	# Only for production run (No clean up in DEV or DEB mode)
787	# and command sent from .. directory.
788	IGCM_sys_Cd ..
789	[ X${JobType} = XRUN ] && IGCM_sys_Rm -rf ${RUN_DIR}
790
791	IGCM_debug_PopStack "IGCM_config_Finalize"
792	}
793
794	#===================================

Note: See TracBrowser for help on using the repository browser.

Download in other formats: