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source: trunk/libIGCM/libIGCM_config/libIGCM_config.ksh @ 427

Last change on this file since 427 was 427, checked in by mmaipsl, 13 years ago
Add SubmitPath? equal to SUBMIT_DIR value in run.card to save path of configuration in ARCHIVE directory. Suppression synchron rebuild if JobType? is not RUN and DRYRUN greater than 0 (for all tests).
Property licence set to The following licence information concerns ONLY the libIGCM tools ================================================================== Copyright © Centre National de la Recherche Scientifique CNRS Commissariat à l'Énergie Atomique CEA libIGCM : Library for Portable Models Computation of IGCM Group. IGCM Group is the french IPSL Global Climate Model Group. This library is a set of shell scripts and functions whose purpose is the management of the initialization, the launch, the transfer of output files, the post-processing and the monitoring of datas produce by any numerical program on any plateforme. This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. Property svn:keywords set to `Revision Author Date`
File size: 31.2 KB

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1	#!/bin/ksh
2
3	#**************************************************************
4	# Author: Sebastien Denvil, Martial Mancip
5	# Contact: Sebastien.Denvil__at__ipsl.jussieu.fr Martial.Mancip__at__ipsl.jussieu.fr
6	# $Revision:: $ Revision of last commit
7	# $Author:: $ Author of last commit
8	# $Date:: $ Date of last commit
9	# IPSL (2006)
10	# This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
11	#
12	#**************************************************************
13
14	#===================================
15	function IGCM_config_Initialize
16	{
17	IGCM_debug_PushStack "IGCM_config_Initialize"
18
19	# Debug Print :
20	echo
21	IGCM_debug_Print 1 "IGCM_config_Initialize :"
22	echo
23
24	# Test modipsl tree existence.
25	IGCM_sys_TestDir ${MODIPSL}
26	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
27	IGCM_sys_TestDir ${libIGCM}
28	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
29	IGCM_sys_TestDir ${R_EXE}
30	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
31	IGCM_sys_TestDir ${SUBMIT_DIR}
32	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
33
34	if ( $DEBUG_debug ) ; then
35	echo "Keep trace of inital SUBMIT_DIR : "
36	ls -lta ${SUBMIT_DIR}
37	fi
38
39	#==================================
40
41	typeset option auxprint CompatibilityTag
42	# Read libIGCM compatibility version in config.card
43	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Compatibility libIGCM
44	eval CompatibilityTag=${config_Compatibility_libIGCM} > /dev/null 2>&1
45
46	if [ ! "${CompatibilityTag}" = "${libIGCM_CurrentTag}" ] ; then
47	IGCM_debug_Exit "config.card is not compatible with libIGCM version ${libIGCM_CurrentTag} see libIGCM FAQ http://wiki.ipsl.jussieu.fr/wiki_ipsl/IGCMG/libIGCM/DocUtilisateur/FAQ ."
48	fi
49
50	#==================================
51	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card UserChoices
52
53	for option in ${config_UserChoices[*]} ; do
54	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card UserChoices ${option}
55	done
56
57	IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices"
58	# Name Space of this experience
59	if [ X${config_UserChoices_SpaceName} != X ] ; then
60	IGCM_debug_PrintVariables 3 config_UserChoices_SpaceName
61	fi
62	# Expericence class of the run
63	if [ X${config_UserChoices_ExperimentName} != X ] ; then
64	IGCM_debug_PrintVariables 3 config_UserChoices_ExperimentName
65	fi
66	IGCM_debug_PrintVariables 3 config_UserChoices_JobName
67	if [ 3 -le ${Verbosity} ] ; then
68	echo "--------------Debug3-->" "config_UserChoices_LongName="
69	echo "--------------Debug3-->" \"${config_UserChoices_LongName}\"
70	fi
71	IGCM_debug_PrintVariables 3 config_UserChoices_TagName
72	IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType
73	IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin
74	IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
75	IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength
76
77	#==================================
78
79	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card ListOfComponents
80
81	echo
82	IGCM_debug_Print 1 "DefineArrayFromSection : ListOfComponents"
83	IGCM_debug_Print 3 ${config_ListOfComponents[*]}
84	echo
85
86	NbComponents=${#config_ListOfComponents[*]}
87
88	#==================================
89	# Define principal executable
90
91	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Executable
92	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Executable Name
93
94	#==================================
95	# Define Outputs Name
96	IGCM_debug_Print 1 "Define Script_Output_Prefix and Exe_Output"
97	eval Script_Output_Prefix=${config_UserChoices_Script_Output_Prefix:='Script_Output'}
98	IGCM_debug_Print 3 "Script_Output_Prefix = ${Script_Output_Prefix}"
99	eval Exe_Output=out_${config_Executable_Name}
100	IGCM_debug_Print 3 "Exe_Output = ${Exe_Output}"
101
102	#==================================
103
104	#===================================================================#
105	# Prepare variables available for ${COMP}.card and ${COMP}.driver #
106	# But available to any son functions #
107	#===================================================================#
108
109	# Convert yyyy-mm-dd date to gregorian yyyymmdd
110	DateBegin=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateBegin} )
111	DateEnd=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )
112
113	# Period Length In Days between DateBegin and DateEnd
114	(( ExperienceLengthInDays=$( IGCM_date_DaysBetweenGregorianDate ${DateEnd} ${DateBegin} ) + 1 ))
115	if [ ${ExperienceLengthInDays} -lt 0 ] ; then
116	IGCM_debug_Print 1 "Problem with dates in config.card : ${DateEnd} < ${DateBegin} ! You must check that."
117	IGCM_debug_Exit "IGCM_config_Initialize" " Wrong Dates."
118	IGCM_debug_Verif_Exit
119	fi
120
121	# Day and Year of Initial State (Given in julian format)
122	InitDay=$(( $( IGCM_date_ConvertGregorianDateToJulian $DateBegin ) % 1000 ))
123	InitYear=$(( $( IGCM_date_ConvertGregorianDateToJulian $DateBegin ) / 1000 ))
124
125	#==================================
126	# Restarts : Gerneral rule or local for each component ?
127	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Restarts
128
129	echo
130	IGCM_debug_Print 1 "DefineArrayFromOption : config_Restarts"
131
132	for option in ${config_Restarts[*]} ; do
133	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Restarts ${option}
134	eval auxprint=\${config_Restarts_${option}}
135	IGCM_debug_Print 3 "${option} : ${auxprint}"
136	done
137
138	#================================================================#
139	# Test and Prepare directories #
140	#================================================================#
141
142	# ==> 4 kinds of input files :
143	# 1) R_INIT : Initial State Files (Etat0, carteveg)
144	# 2) R_BC : Boundary Conditions (Forcages, lai)
145	# 3) Parameters files (allready define through ${SUBMIT_DIR})
146	# 4) Restarts files (allready define in IGCM_config_Initialize)
147
148	# Here we offer the possibility to redefine R_INIT, R_BC
149	# and PeriodNb through config.card
150	R_INIT=${config_UserChoices_R_INIT:=${R_IN}/INIT}
151	echo
152	IGCM_debug_Print 1 "(Re)Define R_INIT, R_BC and PeriodNb"
153	IGCM_debug_Print 3 "R_INIT=${R_INIT}"
154	R_BC=${config_UserChoices_R_BC:=${R_IN}/BC}
155	IGCM_debug_Print 3 "R_BC=${R_BC}"
156	PeriodNb=${config_UserChoices_PeriodNb:=${PeriodNb}}
157	IGCM_debug_Print 3 "Loop in main Job with ${PeriodNb} period(s)"
158
159	# Test Archive input/output.
160	IGCM_sys_TestDirArchive ${ARCHIVE}
161	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
162	IGCM_sys_TestDirArchive ${R_IN}
163	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
164
165	#====================================================
166	#R_SAVE : Job output directory
167	if ( [ ! X${config_UserChoices_SpaceName} = X ] && [ ! X${config_UserChoices_ExperimentName} = X ] ) ; then
168	FreeName=$( echo ${config_UserChoices_JobName} \| sed 's/.*_//' )
169	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
170	R_DODS=${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${FreeName}
171	else
172	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
173	R_DODS=${config_UserChoices_TagName}/${config_UserChoices_JobName}
174	fi
175
176	if [ ! -f ${SUBMIT_DIR}/run.card ]; then
177	IGCM_sys_MkdirArchive ${R_SAVE}
178	else
179	#Test state of run in run.card
180	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState
181	if ( [ ${run_Configuration_PeriodState} != "Start" ] && [ ${run_Configuration_PeriodState} != "Running" ] && [ ${run_Configuration_PeriodState} != "OnQueue" ] && [ ${run_Configuration_PeriodState} != "Continue" ] ) ; then
182	echo
183	IGCM_debug_Print 1 "!!!! IGCM_config_Initialize Error PeriodState : " ${run_Configuration_PeriodState} "!!!!!!!!!!"
184	echo
185	IGCM_debug_Exit "IGCM_config_Initialize Error PeriodState : " ${run_Configuration_PeriodState}
186	IGCM_debug_Verif_Exit
187	fi
188	fi
189	IGCM_sys_TestDirArchive ${R_SAVE}
190	[ $? != 0 ] && IGCM_debug_Exit "IGCM_sys_TestDirArchive"
191
192	#==================================
193	# Post :
194	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/config.card Post
195
196	echo
197	IGCM_debug_Print 1 "DefineArrayFromOption : config_Post"
198
199	for option in ${config_Post[*]} ; do
200	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card Post ${option}
201	eval auxprint=\${config_Post_${option}}
202	IGCM_debug_Print 3 "${option} : ${auxprint}"
203	done
204
205	#====================================================
206	# Define REBUILD_DIR : where we store files needing rebuild process
207	if [ X${config_Post_RebuildFromArchive} = Xtrue ] ; then
208	REBUILD_DIR=${R_SAVE}/TMP
209	IGCM_sys_MkdirArchive ${REBUILD_DIR}
210	else
211	REBUILD_DIR=${BIG_DIR}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
212	IGCM_sys_MkdirWork ${REBUILD_DIR}
213	fi
214
215	#====================================================
216	# Experience type : DEB(ug), DEV(elopment), RUN
217	if [ X${JobType} != XRUN ] ; then
218	echo
219	echo "===================================================="
220	echo "libIGCM JOB is NOT in RUN type mode."
221	echo "!! OUTPUT files will NOT be PROTECTED !!"
222	echo "Be carefull : you can ERASE the result of this job !"
223
224	case ${JobType} in
225	DEB)
226	echo "DEBUG mode : activation of 'set -vx' mode."
227	echo "DEBUG mode : no protection for output files."
228	echo "DEBUG mode : if active force asynchronous rebuild frequency to PeriodLength frequency."
229	;;
230	DEV)
231	echo "DEVelopment mode : no protection for output files."
232	echo "DEVelopment mode : if active force asynchronous rebuild frequency to PeriodLength frequency."
233	;;
234	esac
235
236	if ( [ X${config_Post_RebuildFrequency} != XNONE ] && [ ${DRYRUN} -eq 0 ] ) ; then
237	if [ X${config_Post_RebuildFrequency} != X${config_UserChoices_PeriodLength} ] ; then
238	echo "------------"
239	echo "WARNING : Job is NOT in RUN mode then we will force REBUILD Frequency"
240	echo " to PeriodLength : ${config_UserChoices_PeriodLength}"
241	echo "------------"
242	config_Post_RebuildFrequency=${config_UserChoices_PeriodLength}
243	fi
244	fi
245	echo "===================================================="
246	echo
247	fi
248
249	#====================================================
250	#R_OUT_KSH : Storage place for job output
251	#R_OUT_EXE : Storage place for binary used during simulation
252	R_OUT_KSH=${R_SAVE}/Out
253	R_OUT_EXE=${R_SAVE}/Exe
254
255	IGCM_debug_PopStack "IGCM_config_Initialize"
256	}
257
258	#===================================
259	function IGCM_config_Analyse_PeriodLength
260	{
261	IGCM_debug_PushStack "IGCM_config_Analyse_PeriodLength"
262
263	typeset i
264
265	# Determine number of day(s) in PeriodLength :
266	case ${config_UserChoices_PeriodLength} in
267	Y\|y)
268	PeriodLengthInYears=$( echo ${config_UserChoices_PeriodLength} \| sed -e 's/[yY]//' )
269	IGCM_debug_Print 1 "Number of years for PeriodLength : ${PeriodLengthInYears}"
270	PeriodLengthInDays=0
271	i=0
272	until [ $i -ge $PeriodLengthInYears ] ; do
273	(( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInYear $(( year + i )) ) ))
274	(( i=i+1 ))
275	done
276	;;
277	M\|m)
278	PeriodLengthInMonths=$( echo ${config_UserChoices_PeriodLength} \| sed -e 's/[mM]//' )
279	IGCM_debug_Print 1 "Number of months for PeriodLength : ${PeriodLengthInMonths}"
280	PeriodLengthInDays=0
281	i=0
282	until [ $i -ge $PeriodLengthInMonths ] ; do
283	if [ $(( month + i )) -lt 13 ] ; then
284	(( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( month + i )) ) ))
285	else
286	(( PeriodLengthInDays = PeriodLengthInDays + $( IGCM_date_DaysInMonth $year $(( month + i - 12 )) ) ))
287	fi
288	(( i=i+1 ))
289	done
290	;;
291	D\|d)
292	PeriodLengthInMonths=0
293	PeriodLengthInDays=$( echo ${config_UserChoices_PeriodLength} \| sed -e 's/[dD]//' );;
294	*)
295	IGCM_debug_Exit "IGCM_config_Analyse_PeriodLength " ${config_UserChoices_PeriodLength} " invalid period length : choose in Y, M, *D."
296	IGCM_debug_Verif_Exit ;;
297	esac
298
299	IGCM_debug_PopStack "IGCM_config_Analyse_PeriodLength"
300	}
301
302	#===================================
303	function IGCM_config_Check
304	{
305	IGCM_debug_PushStack "IGCM_config_Check"
306
307	# If one of the following modulo is not zero :
308	# we will issue an error then explain and exit in
309	# AA_job IGCM_debug_Verif_Exit call before binary submission
310
311	echo
312	IGCM_debug_Print 1 "IGCM_config_Check :"
313	echo
314
315	typeset i
316
317	if ( [ ! X${config_Post_RebuildFrequency} = X${NULL_STR} ] \|\| [ ! X${config_Post_RebuildFrequency} = XNONE ] ) ; then
318	AsynchronousRebuild=true
319	IGCM_debug_Print 1 "Asynchronous rebuild has been activated."
320	echo
321	# modulo (RebuildFrequency and PeriodLength/TimeSeriesFrequency/SeasonalFrequency) must be zero
322	IGCM_post_CheckModuloFrequency config_Post_RebuildFrequency config_UserChoices_PeriodLength
323	IGCM_post_CheckModuloFrequency config_Post_TimeSeriesFrequency config_Post_RebuildFrequency
324	IGCM_post_CheckModuloFrequency config_Post_SeasonalFrequency config_Post_RebuildFrequency
325	else
326	AsynchronousRebuild=false
327	IGCM_debug_Print 1 "Asynchronous rebuild has not been activated"
328	IGCM_debug_Print 1 "Proceed with standard post-treatment pathway"
329	echo
330	#modulo (TimeSeriesFrequency/SeasonalFrequency and PeriodLenght) must be zero
331	IGCM_post_CheckModuloFrequency config_Post_TimeSeriesFrequency config_UserChoices_PeriodLength
332	IGCM_post_CheckModuloFrequency config_Post_SeasonalFrequency config_UserChoices_PeriodLength
333	fi
334
335	#modulo (TimeSeriesFrequency and all Chunck2D) must be zero
336	NbJob=${#CHUNCK2D_SIZE[@]}
337	i=0
338	until [ $i -ge $NbJob ]; do
339	value=${CHUNCK2D_SIZE[${i}]}
340	IGCM_post_CheckModuloFrequency value config_Post_TimeSeriesFrequency
341	(( i=i+1 ))
342	done
343
344	#modulo (TimeSeriesFrequency and all Chunck3D) must be zero
345	NbJob=${#CHUNCK3D_SIZE[@]}
346	i=0
347	until [ $i -ge $NbJob ]; do
348	value=${CHUNCK3D_SIZE[${i}]}
349	IGCM_post_CheckModuloFrequency value config_Post_TimeSeriesFrequency
350	(( i=i+1 ))
351	done
352
353	IGCM_debug_PopStack "IGCM_config_Check"
354	}
355
356	#===================================
357	function IGCM_config_PeriodStart
358	{
359	IGCM_debug_PushStack "IGCM_config_PeriodStart"
360
361	echo
362	IGCM_debug_Print 1 "IGCM_config_PeriodStart :"
363	echo
364
365	if [ ! -r ${SUBMIT_DIR}/run.card ]; then
366
367	#================================================#
368	# The file run.card doesn't exist #
369	#================================================#
370
371	eval FirstInitialize=true
372
373	#copy initial run.card
374	IGCM_sys_Cp ${SUBMIT_DIR}/run.card.init ${SUBMIT_DIR}/run.card
375
376	IGCM_date_GetYearMonth $DateBegin year month
377	year_m1=$(( year - 1 ))
378	year_p1=$(( year + 1 ))
379	IGCM_config_Analyse_PeriodLength
380
381	eval PeriodDateBegin=${DateBegin} > /dev/null 2>&1
382	PeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} $(( ${PeriodLengthInDays} - 1 )) )
383	eval CumulPeriod=1 > /dev/null 2>&1
384
385	#=================================================#
386	# Creation and write updated run.card #
387	#=================================================#
388
389	#Correct run.card Configuration for this period
390	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin ${PeriodDateBegin}
391	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd ${PeriodDateEnd}
392	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod ${CumulPeriod}
393	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration SubmitPath ${SUBMIT_DIR}
394
395	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Running"
396
397	else
398	#================================================#
399	# The file run.card allready exist #
400	#================================================#
401
402	eval FirstInitialize=false
403
404	#Test state of run in run.card
405	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodState
406	if ( [ ${run_Configuration_PeriodState} != "Running" ] && [ ${run_Configuration_PeriodState} != "OnQueue" ] && [ ${run_Configuration_PeriodState} != "Continue" ] ) ; then
407	echo
408	IGCM_debug_Print 1 "!!!!!! IGCM_config_PeriodStart Error PeriodState : " ${run_Configuration_PeriodState} "!!!!!!!!!!"
409	echo
410	IGCM_debug_Exit "IGCM_config_PeriodStart Error PeriodState : " ${run_Configuration_PeriodState}
411	IGCM_debug_Verif_Exit
412	fi
413
414	#===================================#
415	# Read updated run.card #
416	#===================================#
417
418	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration OldPrefix
419	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin
420	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd
421	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod
422
423	PeriodDateBegin=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateBegin} )
424	PeriodDateEnd=$( IGCM_date_ConvertFormatToGregorian ${run_Configuration_PeriodDateEnd} )
425	eval CumulPeriod="${run_Configuration_CumulPeriod}" > /dev/null 2>&1
426
427	if [ ${Period} = 1 ]; then
428	# save last Job output
429	typeset LastPeriod iLastPeriod Last_Script_Output_Name
430	(( LastPeriod=CumulPeriod-PeriodNb ))
431	iLastPeriod=$( printf "%06d" ${LastPeriod} )
432	Last_Script_Output_Name="${Script_Output_Prefix}_${config_UserChoices_JobName}.${iLastPeriod}"
433	Last_run_card="run.card.${iLastPeriod}"
434	#eval ls -l ${SUBMIT_DIR}/${Last_Script_Output_Name}
435	#eval IGCM_sys_Put_Out ${SUBMIT_DIR}/${Last_Script_Output_Name} ${R_OUT_KSH}/${Last_Script_Output_Name} > /dev/null 2>&1
436	IGCM_debug_Print 1 "Try to save previous ksh job output"
437	IGCM_sys_Cd ${SUBMIT_DIR}/
438	IGCM_sys_Put_Out ${Last_Script_Output_Name} ${R_OUT_KSH}/${Last_Script_Output_Name}.$$ rw
439	IGCM_sys_Put_Out ${SUBMIT_DIR}/run.card ${R_OUT_KSH}/${Last_run_card}.$$ rw
440	IGCM_sys_Cd ${RUN_DIR}
441	else
442	unset FileToBeDeleted
443	fi
444
445	IGCM_date_GetYearMonth $PeriodDateBegin year month
446	year_m1=$(( year - 1 ))
447	year_p1=$(( year + 1 ))
448	IGCM_config_Analyse_PeriodLength
449
450	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Running"
451
452	fi
453	OldPrefix=${config_UserChoices_JobName}_${PeriodDateEnd}
454
455	#===================================================================#
456	# Prepare variables available for ${COMP}.card and ${COMP}.driver #
457	# But available to any son functions #
458	#===================================================================#
459
460	# Period Length In Days between DateBegin and DateCurrent (at end of period == PeriodDateEnd !)
461	(( SimulationLengthInDays = $( IGCM_date_DaysBetweenGregorianDate ${PeriodDateEnd} ${DateBegin} ) + 1 ))
462
463	# Debug Print :
464	IGCM_debug_Print 1 "IGCM_config_PeriodStart : Before Execution"
465	IGCM_debug_Print 3 "Year of simulation : ${year}"
466	IGCM_debug_Print 3 "Month of simulation : ${month}"
467	IGCM_debug_Print 3 "PeriodLengthInDays : ${PeriodLengthInDays}"
468	IGCM_debug_Print 3 "PeriodDateBegin : ${PeriodDateBegin}"
469	IGCM_debug_Print 3 "PeriodDateEnd : ${PeriodDateEnd}"
470	IGCM_debug_Print 3 "SimulationLengthInDays : ${SimulationLengthInDays}"
471	IGCM_debug_Print 3 "ExperienceLengthInDays : ${ExperienceLengthInDays}"
472
473	#================================================================#
474	# Prepare variables available for comp_finalyze #
475	#================================================================#
476
477	# Period for save files
478	eval DatesPeriod=${PeriodDateBegin}_${PeriodDateEnd} > /dev/null 2>&1
479
480	# Prefix for save files of this period
481	eval PREFIX=${config_UserChoices_JobName}_${DatesPeriod} > /dev/null 2>&1
482
483	# List of files that will be deleted in RUN_DIR after run
484	[ -f stack ] && FileToBeDeleted[0]="stack"
485
486	# Test if the same run as already been saved :
487	if [ X${JobType} = XRUN ] ; then
488	if [ ${DRYRUN} -le 0 ] ; then
489	if ( IGCM_sys_TestFileArchive ${R_OUT_KSH}/${PREFIX}_${Exe_Output} ) ; then
490	IGCM_debug_Exit "IGCM_config_PeriodStart" "You are currently RErunning an old job."
491	IGCM_debug_Print 1 "Because of readonly permissions, you can't RErun a job when saved files"
492	IGCM_debug_Print 1 " are still in the ARCHIVE directory. You must deleted those files, or "
493	IGCM_debug_Print 1 " the whole ${R_SAVE} tree. See clean_month.job in ${libIGCM} directory."
494	IGCM_debug_Print 1 " This exit has been initiated because at least ${R_OUT_KSH}/${PREFIX}_${Exe_Output} exists."
495	IGCM_debug_Verif_Exit
496	fi
497	fi
498	else
499	if ( IGCM_sys_TestFileArchive ${R_OUT_KSH}/${PREFIX}_${Exe_Output} ) ; then
500	IGCM_debug_Print 1 "IGCM_config_PeriodStart" "RErun an old job. DEBUG of DEV mode."
501	fi
502	fi
503
504	IGCM_debug_PopStack "IGCM_config_PeriodStart"
505	}
506
507	#===================================
508	function IGCM_config_PeriodEnd
509	{
510	IGCM_debug_PushStack "IGCM_config_PeriodEnd"
511
512	echo
513	IGCM_debug_Print 1 "IGCM_config_PeriodEnd :"
514	echo
515
516	#==================================#
517	# Save Job output #
518	#==================================#
519	IGCM_sys_Put_Out ${Exe_Output} ${R_OUT_KSH}/${PREFIX}_${Exe_Output}
520	eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${Exe_Output}"
521
522	IGCM_sys_Put_Out ${SUBMIT_DIR}/run.card ${R_OUT_KSH}/run.card rw
523
524	typeset LS_comp LS_bin ExeDate ExeCpuLog ExeSize NextExeSize LastCompExeSize
525	typeset comp i
526	typeset ExeNameIn ExeNameOut
527
528	#==================================#
529	# Get last Exe Size #
530	#==================================#
531
532	if [ ${DRYRUN} -le 1 ] ; then
533	(( i=0 ))
534	if ( ${FirstInitialize} ) ; then
535	run_Log_LastExeSize=""
536	for comp in ${config_ListOfComponents[*]} ; do
537	run_Log_LastExeSize[$i]=0
538	(( i=i+1 ))
539	done
540	else
541	IGCM_card_DefineArrayFromOption ${SUBMIT_DIR}/run.card Log LastExeSize
542	fi
543	fi
544	#==================================#
545	# And Build ExeDate #
546	#==================================#
547
548	# ExeDate = ATM_Jun_12_09:34-SRF_Jun_12_09:34-OCE_Jun_12_09:34-ICE_Jun_12_09:34-CPL_Jun_12_09:33
549	# Would be nice to have next line but no way to format ls output (need to ls -l --time-style "+%Y-%m-%dT%H:%M")
550	# ExeDate = ATM_2009-06-12T09:34+SRF_2009-06-12T09:34+OCE_2009-06-12T09:34+ICE_2009-06-12T09:34+CPL_2009-06-12T09:34
551	ExeDate=""
552	NextExeSize="( "
553	(( i=0 ))
554
555	for comp in ${config_ListOfComponents[*]} ; do
556
557	IGCM_debug_Print 1 ${comp}
558
559	eval ExeNameIn=\${config_Executable_${comp}[0]}
560	eval ExeNameOut=\${config_Executable_${comp}[1]}
561	# Only if we really have an executable for the component :
562	if [ X${ExeNameIn} = X\"\" ] ; then
563	# If there is no exe file for this component
564	(( ExeSize=0 ))
565	else
566	eval LS_bin=${R_EXE}/${ExeNameIn}
567	IGCM_sys_FileSize ${LS_bin} ExeSize
568
569	set +A LS_comp -- $( LC_TIME=en_US ls -l ${LS_bin} )
570	if [ X${ExeDate} = X ] ; then
571	# First component exe date
572	ExeDate=${comp}_${LS_comp[5]}_${LS_comp[6]}
573	else
574	ExeDate=${ExeDate}-${comp}_${LS_comp[5]}_${LS_comp[6]}
575	fi
576	ExeDate=${ExeDate}_${LS_comp[7]}
577	fi
578
579	if [ ${i} -eq 0 ] ; then
580	# First component
581	NextExeSize="( "${ExeSize}
582	else
583	NextExeSize=${NextExeSize}", "${ExeSize}
584	fi
585	eval LastCompExeSize=${run_Log_LastExeSize[$i]}
586	(( i=i+1 ))
587
588	if [ ${DRYRUN} -le 1 ] ; then
589	if [ ${ExeSize} -ne ${LastCompExeSize} ] ; then
590	if ( ${FirstInitialize} ) ; then
591	IGCM_debug_Print 1 "Put first ${ExeNameIn} in ${R_OUT_EXE} !"
592	else
593	IGCM_debug_Print 1 "${ExeNameIn} has changed in ${R_EXE} !"
594	eval FileToBeDeleted[${#FileToBeDeleted[@]}]=${ExeNameOut}
595	fi
596	eval IGCM_sys_Put_Out ${ExeNameOut} ${R_OUT_EXE}/${PREFIX}_${ExeNameIn} rw
597	fi
598	fi
599	done
600
601	if [ ${DRYRUN} -le 1 ] ; then
602	tail -1500 ${Exe_Output} > ${Exe_Output}_tail.txt
603	ExeCpuLog=$( gawk -f ${libIGCM}/libIGCM_sys/IGCM_add_out.awk ${Exe_Output}_tail.txt )
604	RET=$?
605	if [ $RET -eq 0 ] ; then
606	# ExeCpuLog variable contents 5 fields
607	echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${ExeCpuLog} ${ExeDate}" \| \
608	gawk '{printf("# %11d \| %15s \| %15s \| %19s \| %19s \| %15.5f \| %15.5f \| %15.5f \| %s\n", \
609	$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/run.card
610	fi
611	eval FileToBeDeleted[${#FileToBeDeleted[@]}]="${Exe_Output}_tail.txt"
612	fi
613
614	NextExeSize=${NextExeSize}" )"
615	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Log LastExeSize "${NextExeSize}"
616
617	# All was right ? no ? then we stop.
618	IGCM_debug_Verif_Exit
619
620	# If all was OK, we can delete all files not necessary for next Job
621	IGCM_debug_Print 1 "Files that will be deleted before next period-run : "
622
623	if [ ${DRYRUN} -le 2 ] ; then
624	for f in ${FileToBeDeleted[@]} ; do [ -f ${f} ] && ls -la $f ; [ -f ${f} ] && rm -f $f ; done
625	else
626	echo ${FileToBeDeleted[@]}
627	fi
628
629	#=================================================#
630	# Modification of libIGCM behaviour #
631	#=================================================#
632
633	# To use this function, one must copy libIGCM.card from ${libIGCM} directory
634	# and put it in ${SUBMIT_DIR} directory. Ater modifications of ${SUBMIT_DIR}/libIGCM.card,
635	# variables define inside [UserChanges] will be modified for next Period of libIGCM main loop.
636	if [ -f ${SUBMIT_DIR}/libIGCM.card ] ; then
637	echo
638	echo "########################################################################"
639	echo "!!! Modification of libIGCM behaviour !!!"
640	echo
641
642	IGCM_debug_Print 1 "DefineArrayFromOption : libIGCM_UserChanges in libIGCM.card"
643	IGCM_card_DefineArrayFromSection ${SUBMIT_DIR}/libIGCM.card UserChanges
644	IGCM_debug_Print 2 "libIGCM_UserChanges" ${libIGCM_UserChanges[*]}
645
646	# Special treatments for libIGCM internals
647	for option in ${libIGCM_UserChanges[*]} ; do
648	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/libIGCM.card UserChanges ${option}
649
650	echo "We will change : ${option}."
651	eval echo "Previous value : " \${${option}}
652	eval echo "Change to : " \${libIGCM_UserChanges_${option}}
653
654	eval ${option}=\${libIGCM_UserChanges_${option}}
655
656	case ${option} in
657	config_UserChoices_DateEnd)
658	IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd
659	DateEnd=$( IGCM_date_ConvertFormatToGregorian ${config_UserChoices_DateEnd} )
660
661	# Period Length In Days between DateBegin and DateEnd
662	(( ExperienceLengthInDays=$( IGCM_date_DaysBetweenGregorianDate ${DateEnd} ${DateBegin} ) + 1 ))
663	if [ ${ExperienceLengthInDays} -lt 0 ] ; then
664	IGCM_debug_Print 1 "Problem with dates in libIGCM.card : ${DateEnd} < ${DateBegin} ! You must check that."
665	IGCM_debug_Exit "IGCM_PeriodEnd" " Wrong Dates."
666	IGCM_debug_Verif_Exit
667	fi
668	;;
669	config_UserChoices_PeriodLength)
670	;;
671	PeriodNb)
672	IGCM_debug_Print 3 "Loop in main Job with ${PeriodNb} period(s)"
673	;;
674	config_Post_RebuildFrequency)
675	IGCM_debug_Print 3 "Change config_Post_RebuildFrequency=${config_Post_RebuildFrequency} : IGCM_post_Configure"
676	IGCM_post_Configure
677	;;
678	config_Post_TimeSeriesFrequency)
679	IGCM_debug_Print 3 "Change config_Post_TimeSeriesFrequency = ${config_Post_TimeSeriesFrequency} : IGCM_post_Initialize"
680	IGCM_post_Configure
681	;;
682	config_Post_SeasonalFrequency)
683	IGCM_debug_Print 3 "Change config_Post_SeasonalFrequency = ${config_Post_SeasonalFrequency} : IGCM_post_Initialize"
684	IGCM_post_Configure
685	;;
686	esac
687	done
688
689	echo
690	echo "########################################################################"
691	echo
692	fi
693
694	#=================================================#
695	# Determine next computed period #
696	#=================================================#
697
698	PeriodDateBegin=$( IGCM_date_AddDaysToGregorianDate ${PeriodDateEnd} 1 )
699	IGCM_date_GetYearMonth $PeriodDateBegin year month
700	year_m1=$(( year - 1 ))
701	year_p1=$(( year + 1 ))
702	IGCM_config_Analyse_PeriodLength
703	PeriodDateEnd=$( IGCM_date_AddDaysToGregorianDate ${PeriodDateBegin} $(( ${PeriodLengthInDays} - 1 )) )
704
705	# Debug Print :
706	echo
707	IGCM_debug_Print 1 "IGCM_config_PeriodEnd : Preparing Next Execution"
708	IGCM_debug_Print 3 "PeriodDateBegin : ${PeriodDateBegin}"
709	IGCM_debug_Print 3 "PeriodDateEnd : ${PeriodDateEnd}"
710	IGCM_debug_Print 3 "PeriodLengthInDays : ${PeriodLengthInDays}"
711
712	PeriodDateBegin=$( IGCM_date_ConvertFormatToHuman ${PeriodDateBegin} )
713	PeriodDateEnd=$( IGCM_date_ConvertFormatToHuman ${PeriodDateEnd} )
714
715	(( CumulPeriod = CumulPeriod + 1 ))
716
717	# Debug Print :
718	echo
719	IGCM_debug_Print 3 "PeriodDateBegin Human : ${PeriodDateBegin}"
720	IGCM_debug_Print 3 "PeriodDateEnd Human : ${PeriodDateEnd}"
721	IGCM_debug_Print 3 "CumulPeriod : ${CumulPeriod}"
722
723	#=================================================#
724	# Write updated run.card #
725	#=================================================#
726
727	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration OldPrefix ${OldPrefix}
728	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateBegin ${PeriodDateBegin}
729	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodDateEnd ${PeriodDateEnd}
730	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration CumulPeriod ${CumulPeriod}
731
732	IGCM_debug_PopStack "IGCM_config_PeriodEnd"
733	}
734
735	#===================================
736	function IGCM_config_Finalize
737	{
738	IGCM_debug_PushStack "IGCM_config_Finalize"
739
740	echo
741	IGCM_debug_Print 1 "IGCM_config_Finalize :"
742	echo
743
744	if [ ${SimulationLengthInDays} -ge ${ExperienceLengthInDays} ] ; then
745	#==========================#
746	# End of entire simulation #
747	#==========================#
748
749	# Mail notification
750	IGCM_sys_SendMail
751
752	#
753	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "Completed"
754	IGCM_debug_Print 1 "Normal End of computation."
755	if ( $DEBUG_debug ) ; then
756	echo
757	IGCM_debug_Print 1 "Your files on ${R_OUT} :"
758	IGCM_sys_Tree ${R_SAVE}
759	fi
760	else
761	#=================#
762	# Submit next job #
763	#=================#
764
765	IGCM_card_WriteOption ${SUBMIT_DIR}/run.card Configuration PeriodState "OnQueue"
766
767	# Name of next Ksh Script output :
768	eval Script_Output="${Script_Output_Prefix}_${config_UserChoices_JobName}.$( printf "%06d" ${CumulPeriod} )"
769
770	IGCM_debug_Print 1 "Submit next job"
771	# SUBMIT NEXT JOB from SUBMIT_DIR and come back in RUN_DIR
772	IGCM_sys_Cd ${SUBMIT_DIR}
773	# Keep only the 5 latest ${Script_Output_Prefix}_${config_UserChoices_JobName}
774	ScriptTot=$( ls ${Script_Output_Prefix}_${config_UserChoices_JobName}.?????? 2>/dev/null \| wc -l )
775	[ ${ScriptTot} -gt 5 ] && rm -f $( ls ${Script_Output_Prefix}_${config_UserChoices_JobName}.?????? \| head -$(( ${ScriptTot} - 5 )) )
776	# Submit next job and come back
777	IGCM_sys_Qsub ${SUBMIT_DIR}/Job_${config_UserChoices_JobName}
778	IGCM_sys_Cd -
779	fi
780
781	# Supress Non Deleted Boundary files
782	if [ ${DRYRUN} -le 2 ] ; then
783	IGCM_comp_DelFixeBoundaryFiles
784	ls -la
785	fi
786
787	# Clean ${RUN_DIR}=${RUN_DIR_PATH}/${config_UserChoices_TagName}/${config_UserChoices_JobName}
788	# Only for production run (No clean up in DEV or DEB mode)
789	# and command sent from .. directory.
790	IGCM_sys_Cd ..
791	[ X${JobType} = XRUN ] && IGCM_sys_Rm -rf ${RUN_DIR}
792
793	IGCM_debug_PopStack "IGCM_config_Finalize"
794	}
795
796	#===================================

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