| 1 | #!/bin/bash |
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| 2 | #+ |
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| 3 | # |
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| 4 | # .. _bibopa.sh: |
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| 5 | # |
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| 6 | # .. program:: bibopa.sh |
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| 7 | # |
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| 8 | # ========= |
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| 9 | # bibopa.sh |
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| 10 | # ========= |
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| 11 | # |
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| 12 | # SYNOPSIS |
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| 13 | # ======== |
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| 14 | # |
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| 15 | # .. code-block:: bash |
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| 16 | # |
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| 17 | # bibopa.sh -tmpdir tmpdir -i filein -e encoding -ti typein -o order -p project -l lang -to typeout |
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| 18 | # |
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| 19 | # DESCRIPTION |
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| 20 | # =========== |
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| 21 | # |
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| 22 | # .. option:: -tmpdir <tmpdir> |
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| 23 | # .. option:: -i <filein> |
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| 24 | # .. option:: -ti <typein> |
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| 25 | # .. option:: -e <encoding> |
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| 26 | # |
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| 27 | # default is encoding="iso-8859-1" |
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| 28 | # |
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| 29 | # .. option:: -o <order> |
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| 30 | # .. option:: -p <project> |
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| 31 | # .. option:: -l <lang> |
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| 32 | # .. option:: -to <typeout> |
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| 33 | # |
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| 34 | # transform a bibliography file in XML/DocBook 5 format |
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| 35 | # |
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| 36 | # Each entry in the same input file must follows the same order for authors |
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| 37 | # except the first one. |
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| 38 | # |
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| 39 | # With ``fs`` in option :option:`-o order` you will correctly process raw entry with |
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| 40 | # firstname and surname in this order for authors except the first one. |
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| 41 | # |
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| 42 | # If raw entry uses surname and firstname order, you should use ``sf``. |
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| 43 | # |
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| 44 | # .. parsed-literal:: |
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| 45 | # |
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| 46 | # Behera, S. K., J. Luo, S. Masson, S. Rao, S. Gualdi, P. Delecluse, A. |
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| 47 | # Navarra and T. Yamagata, 2004 : Paramount Impact of the Indian Ocean |
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| 48 | # Dipole on the East African Short Rains: A CGCM Study, J. Climate, In |
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| 49 | # press. |
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| 50 | # |
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| 51 | # donnerait |
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| 52 | # |
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| 53 | # .. parsed-literal:: |
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| 54 | # |
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| 55 | # <biblioentry xml:id="behara2004"> |
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| 56 | # <authorgroup> |
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| 57 | # <author><surname>Behera</surname> <firstname>S. K.</firstname> </author> |
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| 58 | # <author><firstname>J.</firstname> <surname>Luo</surname></author> |
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| 59 | # <author><firstname>S.</firstname> <surname>Masson</surname></author> |
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| 60 | # <author><firstname>S.</firstname> <surname>Rao</surname></author> |
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| 61 | # <author><firstname>S.</firstname> <surname>Gualdi</surname></author> |
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| 62 | # <author><firstname>P.</firstname> <surname>Delecluse</surname></author> |
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| 63 | # <author><firstname>A.</firstname> <surname>Navara</surname></author> |
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| 64 | # <author><firstname>T.</firstname> <surname>Yamagata</surname></author> |
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| 65 | # </authorgroup> |
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| 66 | # <date>2004</date> |
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| 67 | # <title>Paramount Impact of the Indian Ocean Dipole on the East African |
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| 68 | # Short Rains: A CGCM Study</title> |
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| 69 | # <publishername>J. Climate</publishername> |
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| 70 | # <biblioid class="doi">doi</biblioid> |
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| 71 | # <bibliomisc role="pseudoref">In press.</bibliomisc> |
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| 72 | # <bibliomisc role="internalref">from |
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| 73 | # http://www.lodyc.jussieu.fr/~opatlod/NEMO_v1/6_Menu/2_page/index.html |
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| 74 | # 2007-03-29T16:24:31Z fplod by hand</bibliomisc> |
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| 75 | # </biblioentry> |
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| 76 | # |
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| 77 | # .. parsed-literal:: |
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| 78 | # |
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| 79 | # @book{MetReiCoh2004 , |
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| 80 | # author = {Michael Metcalf and |
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| 81 | # John Reid and Malcolm Cohen}, |
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| 82 | # title = {Fortran 95/2003 explained}, |
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| 83 | # year = {2004}, |
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| 84 | # publisher = {Oxford University Press}, |
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| 85 | # edition = {Third}, |
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| 86 | # ISBN = {0-19-852693-8}, |
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| 87 | # pages = {434} |
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| 88 | # } |
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| 89 | # |
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| 90 | # donnerait |
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| 91 | # |
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| 92 | # .. parsed-literal:: |
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| 93 | # |
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| 94 | # <biblioentry xml:id="MetReiCoh2004"> |
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| 95 | # <authorgroup> |
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| 96 | # <author><firstname>Michael</firstname> <surname>Metcalf</surname></author> |
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| 97 | # <author><firstname>John</firstname> <surname>Reid</surname></author> |
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| 98 | # <author><firstname>Malcolm</firstname> <surname>Cohen</surname></author> |
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| 99 | # </authorgroup> |
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| 100 | # <date>2004}</date> |
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| 101 | # <title>Fortran 95/2003 explained</title> |
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| 102 | # <publisher><publishername>Oxford University Press</publishername></publisher> |
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| 103 | # <biblioid class="isbn">0-19-852693-8</biblioid> |
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| 104 | # <pagenums>434</pagenums> |
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| 105 | # <edition>Third</edition> |
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| 106 | # |
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| 107 | # EXAMPLES |
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| 108 | # ======== |
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| 109 | # |
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| 110 | # To transform the NEMO bibliography file written in raw format to XML/DocBook: |
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| 111 | # |
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| 112 | # .. code-block:: bash |
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| 113 | # |
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| 114 | # bibopa.sh -tmpdir /tmp -p birefnemo -i data/biball.txt -ti raw |
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| 115 | # |
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| 116 | # To transform a bibliography file written mailbody format to XML/DocBook: |
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| 117 | # |
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| 118 | # .. code-block:: bash |
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| 119 | # |
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| 120 | # bibopa.sh -tmpdir /tmp -p bibrefnemo -i data/mail2007-05-10T09:01:56Z -ti mailbody |
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| 121 | # |
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| 122 | # To transform a bibliography file written in bibtex format in french to XML/DocBook: |
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| 123 | # |
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| 124 | # .. code-block:: bash |
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| 125 | # |
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| 126 | # bibopa.sh -tmpdir /tmp -p polyfortran -i data/petitpolyfp.bib -ti bibtex -l fr |
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| 127 | # |
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| 128 | # To transform the SUPERBIB demo bibliography file written in raw format to XML/DocBook: |
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| 129 | # |
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| 130 | # .. code-block:: bash |
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| 131 | # |
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| 132 | # bibopa.sh -tmpdir /tmp -p demo1 -i data/bibdemo1.txt -ti raw -l fr |
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| 133 | # |
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| 134 | # Less official but possible: |
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| 135 | # |
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| 136 | # To transform the NEMO bibliography file written in raw format to bibtex: |
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| 137 | # |
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| 138 | # .. code-block:: bash |
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| 139 | # |
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| 140 | # bibopa.sh -tmpdir /tmp -p nemo -ti raw -to bib -i bibnemo.txt |
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| 141 | # |
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| 142 | # SEE ALSO |
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| 143 | # ======== |
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| 144 | # |
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| 145 | # :ref:`mailtouser.sh` |
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| 146 | # |
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| 147 | # TODO |
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| 148 | # ==== |
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| 149 | # |
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| 150 | # gestion des comments |
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| 151 | # |
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| 152 | # gestion des id existants (cf à la fin) |
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| 153 | # |
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| 154 | # option debug |
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| 155 | # |
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| 156 | # should use iconv instead of recode |
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| 157 | # for portability issue but not found yet the "flat" functionality in |
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| 158 | # iconv |
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| 159 | # tips 20101006 : iconv: //TRANSLIT feature not documented cf. |
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| 160 | # http://www.gnu.org/software/libiconv/documentation/libiconv/iconv_open.3.html |
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| 161 | # not already used because non-standard usage |
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| 162 | # |
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| 163 | # write something in the logfile ! |
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| 164 | # |
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| 165 | # handle fully written firstnames like in: |
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| 166 | # |
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| 167 | # .. parsed-literal:: |
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| 168 | # |
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| 169 | # Tsimplis, Michael, Marta Marcos, Jeanne Colin, Samuel Somot, Ananda Pascual, A.G.P. Shaw, 2009 : Sea level variability in the Mediterranean Sea during the 1990s on the basis of two 2d and one 3d model, Journal of Marine Systems, 78, 1, 109-123, doi:10.1016/j.jmarsys.2009.04.003 |
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| 170 | # |
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| 171 | # EVOLUTIONS |
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| 172 | # ========== |
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| 173 | # |
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| 174 | # $Id$ |
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| 175 | # |
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| 176 | # - fplod 20131017T085825Z callisto.locean-ipsl.upmc.fr (Linux) |
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| 177 | # |
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| 178 | # * add tmpdir argument |
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| 179 | # * dynamic xmlstarlet vs xml |
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| 180 | # * add journal "Earth and Planetary Sciences, série IIa, Paris," |
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| 181 | # (nb : diacritics tricks) |
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| 182 | # |
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| 183 | # - fplod 20130423T143122Z cratos.locean-ipsl.upmc.fr (Linux) |
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| 184 | # |
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| 185 | # * add encoding option for input file (too tricky to be implemented see |
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| 186 | # http://stackoverflow.com/questions/805418/how-to-find-encoding-of-a-file-in-unix-via-scripts) |
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| 187 | # |
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| 188 | # - fplod 20120227 |
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| 189 | # |
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| 190 | # * xmlstarlet vs xml |
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| 191 | # |
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| 192 | # - fplod 20101006T113902Z aedon.locean-ipsl.upmc.fr (Darwin) |
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| 193 | # |
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| 194 | # * add "Remote Sensing Env." |
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| 195 | # * add "Ocean Sciences" |
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| 196 | # * add "Dynamics of Atmospheres and Oceans" |
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| 197 | # * add "Comptes Rendus Geoscience" |
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| 198 | # * add "Marine Pollution Bulletin" |
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| 199 | # * add "Continental Shelf Research" |
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| 200 | # * add ""Ocean Sci." |
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| 201 | # * add "Environmental Fluid Mechanics" |
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| 202 | # * add "Geochem. Geophys. Geosyst." |
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| 203 | # * add "Journal of Applied Meteorology and Climatology" |
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| 204 | # * add "Monthly Weather Review" |
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| 205 | # * add "High Performance Computing on Vector Systems 2007" |
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| 206 | # * add "High Performance Computing on Vector Systems 2006" |
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| 207 | # * add "High Performance Computing in Science and Engineering '08" |
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| 208 | # * add "Developments in Earth and Environmental Sciences" |
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| 209 | # * add "Oceanography" |
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| 210 | # |
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| 211 | # - fplod 20101006T100532Z aedon.locean-ipsl.upmc.fr (Darwin) |
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| 212 | # |
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| 213 | # * bug fix (misplaced EOF) |
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| 214 | # * replace -t option by -ti |
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| 215 | # * add -to (typeout) option (by default dbk) |
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| 216 | # * add bibtex production |
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| 217 | # |
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| 218 | # - fplod 2009-03-13T09:35:42Z aedon.locean-ipsl.upmc.fr (Darwin) |
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| 219 | # |
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| 220 | # * add "High Performance Computing in Science and Engineering" |
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| 221 | # * add "Annals of Glaciology" |
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| 222 | # * add "Journal of Physical Oceanography" |
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| 223 | # |
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| 224 | # - fplod 2009-01-15T10:36:18Z aedon.locean-ipsl.upmc.fr (Darwin) |
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| 225 | # |
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| 226 | # * add description of ``-o`` option |
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| 227 | # * add journal "PNAS" |
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| 228 | # * add journal "Lettre PIGB-PMRC" |
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| 229 | # |
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| 230 | # - fplod 2009-01-14T15:27:48Z aedon.locean-ipsl.upmc.fr (Darwin) |
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| 231 | # |
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| 232 | # * add journal "Water Resources Research" |
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| 233 | # * add journal "Climate Research" |
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| 234 | # * add conf "Colloque du GIS « Climat-Environnement-Sociétés »" |
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| 235 | # * add journal "Agricultural and Forest Meteorology" |
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| 236 | # * add conf "VIIth IAHS Scientific Assembly" |
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| 237 | # * add conf "AGU fall Meeting" |
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| 238 | # * add journal "Phil. Trans. Roy. Soc. B" |
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| 239 | # * add journal "Phil. Trans. Roy. Soc. B" |
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| 240 | # * add conf "4th Alexander Von Humboldt International Conference" |
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| 241 | # * add journal/conf "??" (Should not be used too much !) |
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| 242 | # * add journal "Nature Geosciences" |
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| 243 | # * add journal "International Journal of Climatology" |
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| 244 | # * add journal "Journal of Hydrology" |
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| 245 | # * add journal "Revue de l'Ãnergie" |
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| 246 | # * add journal "Clim. Res." |
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| 247 | # * add journal "Hydrol. Earth Sys. Sci." |
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| 248 | # * add journal "Ambio" |
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| 249 | # * add journal "Theoretical and applied climatology" |
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| 250 | # * add journal "Remote Sensing of Environnement" |
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| 251 | # |
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| 252 | # - fplod 2008-10-28T11:40:19Z aedon.locean-ipsl.upmc.fr (Darwin) |
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| 253 | # |
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| 254 | # * add journal "Progress In Oceanography" |
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| 255 | # * add journal "Climatic Change" |
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| 256 | # * add journal "Ocean Dynamics" |
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| 257 | # * add journal "Phil. Trans. Roy. Soc. A" |
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| 258 | # * add journal "Izvestiya Atmospheric and Oceanic Physics" |
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| 259 | # * add journal "Journal of Hydrometeorology" |
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| 260 | # * add journal "Remote Sensing of Environment" |
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| 261 | # * add journal "Oceanology" |
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| 262 | # * add journal "Water Resour. Res." |
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| 263 | # * add journal "Advances in Atmospheric Sciences" |
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| 264 | # * add journal "Quaternary Science Reviews" |
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| 265 | # * replace "Elsevier Oceanography Series" by "Elsevier Oceanographic Series" |
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| 266 | # * bug fix : unclosed date tag |
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| 267 | # * trouble with flat conversion for id building ... |
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| 268 | # * remove interactivity at then end (allowing redirection of stderr and |
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| 269 | # stdout) |
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| 270 | # * strip blank lines |
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| 271 | # * bug fix : counting nb of occurrences of "," technique ... to be improved |
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| 272 | # |
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| 273 | # - fplod 2008-09-16T15:19:59Z aedon.locean-ipsl.upmc.fr (Darwin) |
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| 274 | # |
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| 275 | # * comments in reStructuredText |
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| 276 | # |
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| 277 | # - fplod 2008-05-16T10:33:16Z aedon.locean-ipsl.upmc.fr (Darwin) |
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| 278 | # |
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| 279 | # * add parameter -o for firstname/surname order in bibtex file |
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| 280 | # |
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| 281 | # - fplod 2008-05-15T15:15:04Z aedon.locean-ipsl.upmc.fr (Darwin) |
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| 282 | # |
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| 283 | # * new way of processing bibtex file : external/bibtex2xml.py |
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| 284 | # |
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| 285 | # - fplod 2008-04-30T07:11:58Z aedon.locean-ipsl.upmc.fr (Darwin) |
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| 286 | # |
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| 287 | # * chgt for dbk5 out |
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| 288 | # * xmlto 0.0.18 does'nt like this docbook release. remove |
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| 289 | # * usage of xml (xmlstarlet) for validation |
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| 290 | # * bug fix |
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| 291 | # * add journal names from demo1 |
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| 292 | # * fplod 2008-03-12T16:11:07Z aedon.locean-ipsl.upmc.fr (Darwin) |
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| 293 | # * add -p option (to overide bibrefnemo in file name and id) |
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| 294 | # * add -l option by default en |
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| 295 | # |
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| 296 | # - fplod 2008-03-11T11:25:27Z aedon.locean-ipsl.upmc.fr (Darwin) |
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| 297 | # |
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| 298 | # * add bibtex entry (not finished) |
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| 299 | # |
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| 300 | # - fplod 2007-06-20T17:18:02Z aedon.locean-ipsl.upmc.fr (Darwin) |
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| 301 | # |
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| 302 | # * <bibliomisc role="id"> replace by <biblioid class="doi"> |
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| 303 | # |
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| 304 | # - smasson 2007-06-07T16:43:42Z arete.locean-ipsl.upmc.fr (Darwin) |
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| 305 | # |
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| 306 | # * Add journals |
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| 307 | # |
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| 308 | # - fplod 2007-05-10T09:17:09Z aedon.locean-ipsl.upmc.fr (Darwin) |
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| 309 | # |
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| 310 | # * derniÚres touches |
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| 311 | # |
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| 312 | # - fplod 2007-04-25T10:59:49Z cerbere.locean-ipsl.upmc.fr (Linux) |
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| 313 | # |
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| 314 | # * add a filein parameter and an option for mailbody |
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| 315 | # * comments (line beginning with #) are now possible |
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| 316 | # |
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| 317 | # - Sebastien Masson avril 2007 |
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| 318 | # |
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| 319 | # * creation |
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| 320 | # |
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| 321 | #- |
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| 322 | |
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| 323 | rmbl () { |
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| 324 | echo "${1}" | sed -e "s/^ *//" | sed -e "s/ *$//" |
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| 325 | } |
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| 326 | cleanname () { |
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| 327 | echo "${1}" | sed -e "s/^ *//" \ |
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| 328 | -e "s/^ *,//" \ |
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| 329 | -e "s/^ *;//" \ |
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| 330 | -e "s/^ *\.//" \ |
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| 331 | -e "s/ *$//" \ |
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| 332 | -e "s/, *$//" \ |
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| 333 | -e "s/; *$//" \ |
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| 334 | -e "s/\. *$//" |
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| 335 | } |
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| 336 | # |
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| 337 | system=$(uname) |
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| 338 | case "${system}" in |
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| 339 | AIX|IRIX64) |
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| 340 | echo " www : no specific posix checking" |
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| 341 | ;; |
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| 342 | Darwin) |
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| 343 | ;; |
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| 344 | *) |
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| 345 | set -o posix |
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| 346 | ;; |
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| 347 | esac |
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| 348 | unset system |
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| 349 | # |
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| 350 | set -u |
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| 351 | # |
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| 352 | command=$(basename ${0}) |
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| 353 | log_date=$(date -u +"%Y%m%dT%H%M%SZ") |
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| 354 | log=/tmp/$(basename ${command} .sh).log.${log_date} |
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| 355 | # |
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| 356 | # test if xsltproc is available |
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| 357 | tool=xsltproc |
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| 358 | type ${tool} 1> /dev/null 2>&1 |
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| 359 | status=${?} |
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| 360 | if [ ${status} -ne 0 ] |
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| 361 | then |
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| 362 | echo " eee : ${tool} not found" |
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| 363 | exit 1 |
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| 364 | fi |
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| 365 | unset status |
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| 366 | unset tool |
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| 367 | # |
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| 368 | # test if xml is available |
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| 369 | tool=${xmlcmd} |
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| 370 | type ${tool} 1> /dev/null 2>&1 |
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| 371 | status=${?} |
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| 372 | if [ ${status} -ne 0 ] |
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| 373 | then |
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| 374 | echo " eee : ${tool} not found" |
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| 375 | exit 1 |
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| 376 | fi |
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| 377 | unset status |
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| 378 | unset tool |
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| 379 | # |
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| 380 | # test if python is available |
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| 381 | tool=python |
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| 382 | type ${tool} 1> /dev/null 2>&1 |
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| 383 | status=${?} |
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| 384 | if [ ${status} -ne 0 ] |
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| 385 | then |
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| 386 | echo " eee : ${tool} not found" |
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| 387 | exit 1 |
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| 388 | fi |
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| 389 | unset status |
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| 390 | unset tool |
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| 391 | # |
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| 392 | # test if recode is available |
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| 393 | tool=recode |
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| 394 | type ${tool} 1> /dev/null 2>&1 |
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| 395 | status=${?} |
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| 396 | if [ ${status} -ne 0 ] |
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| 397 | then |
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| 398 | echo " eee : ${tool} not found" |
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| 399 | exit 1 |
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| 400 | fi |
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| 401 | unset status |
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| 402 | unset tool |
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| 403 | # |
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| 404 | usage=" Usage : ${command} -tmpdir tmpdir -i filein -ti typein -e encoding -o order -p project -l lang -to typeout" |
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| 405 | # |
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| 406 | # default |
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| 407 | lang=en |
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| 408 | # fs mean "firstname surname" |
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| 409 | order="fs" |
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| 410 | typeout="dbk" |
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| 411 | encoding="iso-8859-1" |
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| 412 | tmpdir="/tmp" |
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| 413 | # |
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| 414 | minargcount=8 |
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| 415 | #echo " narg ${#}" |
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| 416 | if [ ${#} -lt ${minargcount} ] |
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| 417 | then |
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| 418 | echo "eee : not enough arguments" |
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| 419 | echo "${usage}" |
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| 420 | exit 1 |
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| 421 | fi |
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| 422 | unset minargcount |
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| 423 | # |
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| 424 | while [ ${#} -gt 0 ] |
|---|
| 425 | do |
|---|
| 426 | case ${1} in |
|---|
| 427 | -tmpdir) |
|---|
| 428 | tmpdir=${2} |
|---|
| 429 | shift |
|---|
| 430 | ;; |
|---|
| 431 | -i) |
|---|
| 432 | filein=${2} |
|---|
| 433 | shift |
|---|
| 434 | ;; |
|---|
| 435 | -ti) |
|---|
| 436 | typein=${2} |
|---|
| 437 | shift |
|---|
| 438 | ;; |
|---|
| 439 | -e) |
|---|
| 440 | encoding=${2} |
|---|
| 441 | shift |
|---|
| 442 | ;; |
|---|
| 443 | -to) |
|---|
| 444 | typeout=${2} |
|---|
| 445 | shift |
|---|
| 446 | ;; |
|---|
| 447 | -o) |
|---|
| 448 | # order of firstname surname in bibtex file |
|---|
| 449 | order=${2} |
|---|
| 450 | shift |
|---|
| 451 | ;; |
|---|
| 452 | -p) |
|---|
| 453 | project=${2} |
|---|
| 454 | shift |
|---|
| 455 | ;; |
|---|
| 456 | -l) |
|---|
| 457 | lang=${2} |
|---|
| 458 | shift |
|---|
| 459 | ;; |
|---|
| 460 | -h) |
|---|
| 461 | echo "${usage}" |
|---|
| 462 | exit 0 |
|---|
| 463 | ;; |
|---|
| 464 | *) |
|---|
| 465 | # other choice |
|---|
| 466 | echo "eee : unknown option ${1}" |
|---|
| 467 | echo "${usage}" |
|---|
| 468 | exit 1 |
|---|
| 469 | ;; |
|---|
| 470 | esac |
|---|
| 471 | # next flag |
|---|
| 472 | shift |
|---|
| 473 | done |
|---|
| 474 | unset usage |
|---|
| 475 | # |
|---|
| 476 | # check for filein |
|---|
| 477 | if [ ! -f ${filein} ] |
|---|
| 478 | then |
|---|
| 479 | echo "eee : ${filein} not found" |
|---|
| 480 | exit 1 |
|---|
| 481 | fi |
|---|
| 482 | # |
|---|
| 483 | case ${typeout} in |
|---|
| 484 | dbk) |
|---|
| 485 | fileou=$( basename ${filein} .txt).xml |
|---|
| 486 | ;; |
|---|
| 487 | bibtex) |
|---|
| 488 | fileou=$( basename ${filein} .txt).bib |
|---|
| 489 | ;; |
|---|
| 490 | *) |
|---|
| 491 | echo "eee : typeout should be dbk or bibtex" |
|---|
| 492 | exit 1 |
|---|
| 493 | ;; |
|---|
| 494 | esac |
|---|
| 495 | # |
|---|
| 496 | # check for output |
|---|
| 497 | case ${typein} in |
|---|
| 498 | raw) |
|---|
| 499 | # file like data/biball.txt |
|---|
| 500 | fileraw=${filein} |
|---|
| 501 | ;; |
|---|
| 502 | mailbody) |
|---|
| 503 | # file like data/mail2007-04-25T08:58:16Z.txt |
|---|
| 504 | fileraw=${tmpdir}/$(basename ${filein}).raw |
|---|
| 505 | echo "# from ${filein}" > ${fileraw} |
|---|
| 506 | echo "# ${log_date}" >> ${fileraw} |
|---|
| 507 | echo "# corrections" >> ${fileraw} |
|---|
| 508 | grep "correction_.*=" ${filein} | grep -v "correction_.*=$" | \ |
|---|
| 509 | sed -e "s/correction_.*=//">> ${fileraw} |
|---|
| 510 | echo "# new references" >> ${fileraw} |
|---|
| 511 | awk "/newreferences=/,/comments=/" ${filein} | sed -e "s/newreferences=//" -e "/comments=/d" >> ${fileraw} |
|---|
| 512 | #more ${fileraw} # ++ if debug |
|---|
| 513 | #read a #++ if debug |
|---|
| 514 | ;; |
|---|
| 515 | bibtex) |
|---|
| 516 | # file like data/petitpoly.bib |
|---|
| 517 | fileraw=${tmpdir}/$(basename ${filein}).raw |
|---|
| 518 | awk -f ${PROJECT}/join_endcomma.awk ${filein} > ${fileraw} |
|---|
| 519 | ;; |
|---|
| 520 | *) |
|---|
| 521 | echo "eee : typein should be raw, mailbody or bibtex" |
|---|
| 522 | exit 1 |
|---|
| 523 | ;; |
|---|
| 524 | esac |
|---|
| 525 | # |
|---|
| 526 | # check for output |
|---|
| 527 | if [ -f ${fileou} ] |
|---|
| 528 | then |
|---|
| 529 | echo "eee : ${fileou} already exist" |
|---|
| 530 | exit 1 |
|---|
| 531 | fi |
|---|
| 532 | # |
|---|
| 533 | ij=1 |
|---|
| 534 | jlist[${ij}]="J. Climate" |
|---|
| 535 | ij=$(( ${ij} + 1)) |
|---|
| 536 | jlist[${ij}]="Journal of Climate" |
|---|
| 537 | ij=$(( ${ij} + 1)) |
|---|
| 538 | jlist[${ij}]="Ocean Modelling" |
|---|
| 539 | ij=$(( ${ij} + 1)) |
|---|
| 540 | jlist[${ij}]="Geophys. Res. Lett." |
|---|
| 541 | ij=$(( ${ij} + 1)) |
|---|
| 542 | jlist[${ij}]="J. Geophys. Res." |
|---|
| 543 | ij=$(( ${ij} + 1)) |
|---|
| 544 | jlist[${ij}]="Tellus A" |
|---|
| 545 | ij=$(( ${ij} + 1)) |
|---|
| 546 | jlist[${ij}]="Tellus B" |
|---|
| 547 | ij=$(( ${ij} + 1)) |
|---|
| 548 | jlist[${ij}]="J. Phys. Oceanogr." |
|---|
| 549 | ij=$(( ${ij} + 1)) |
|---|
| 550 | jlist[${ij}]="Clim. Dyn." |
|---|
| 551 | ij=$(( ${ij} + 1)) |
|---|
| 552 | jlist[${ij}]="Clim. Res." |
|---|
| 553 | ij=$(( ${ij} + 1)) |
|---|
| 554 | jlist[${ij}]="Climate Dynamics" |
|---|
| 555 | ij=$(( ${ij} + 1)) |
|---|
| 556 | jlist[${ij}]="Dynamics of Atmospheres and Oceans" |
|---|
| 557 | ij=$(( ${ij} + 1)) |
|---|
| 558 | jlist[${ij}]="Dyn. Atmos. Oceans" |
|---|
| 559 | ij=$(( ${ij} + 1)) |
|---|
| 560 | jlist[${ij}]="Mon. Wea. Rev." |
|---|
| 561 | ij=$(( ${ij} + 1)) |
|---|
| 562 | jlist[${ij}]="Monthly Weather Review" |
|---|
| 563 | ij=$(( ${ij} + 1)) |
|---|
| 564 | jlist[${ij}]="Global Biogeochem. Cycles" |
|---|
| 565 | ij=$(( ${ij} + 1)) |
|---|
| 566 | jlist[${ij}]="Nonlinear Processes in Geophysics" |
|---|
| 567 | ij=$(( ${ij} + 1)) |
|---|
| 568 | jlist[${ij}]="Ocean Sci." |
|---|
| 569 | ij=$(( ${ij} + 1)) |
|---|
| 570 | jlist[${ij}]="Ocean Science" |
|---|
| 571 | ij=$(( ${ij} + 1)) |
|---|
| 572 | jlist[${ij}]="Ocean Sciences" |
|---|
| 573 | ij=$(( ${ij} + 1)) |
|---|
| 574 | jlist[${ij}]="J. Mar. Systems" |
|---|
| 575 | ij=$(( ${ij} + 1)) |
|---|
| 576 | jlist[${ij}]="J. Atmos. Sc." |
|---|
| 577 | ij=$(( ${ij} + 1)) |
|---|
| 578 | jlist[${ij}]="Proc. Royal Soc." |
|---|
| 579 | ij=$(( ${ij} + 1)) |
|---|
| 580 | jlist[${ij}]="Bull. Amer. Meteorol. Soc." |
|---|
| 581 | ij=$(( ${ij} + 1)) |
|---|
| 582 | jlist[${ij}]="Ocean Dyn." |
|---|
| 583 | ij=$(( ${ij} + 1)) |
|---|
| 584 | jlist[${ij}]="Geophysical Monograph Series, Earth's Climate: The Ocean-Atmosphere Interaction" |
|---|
| 585 | ij=$(( ${ij} + 1)) |
|---|
| 586 | jlist[${ij}]="Paleoceanography" |
|---|
| 587 | ij=$(( ${ij} + 1)) |
|---|
| 588 | jlist[${ij}]="Annales Geophysicae" |
|---|
| 589 | ij=$(( ${ij} + 1)) |
|---|
| 590 | jlist[${ij}]="Annals of Geophys." |
|---|
| 591 | ij=$(( ${ij} + 1)) |
|---|
| 592 | jlist[${ij}]="Deep Sea Research Part II: Topical Studies in Oceanography" |
|---|
| 593 | ij=$(( ${ij} + 1)) |
|---|
| 594 | jlist[${ij}]="Deep Sea Res. II" |
|---|
| 595 | ij=$(( ${ij} + 1)) |
|---|
| 596 | jlist[${ij}]="Atmospheric Chemistry and Physics" |
|---|
| 597 | ij=$(( ${ij} + 1)) |
|---|
| 598 | jlist[${ij}]="Atmospheric Chemistry and Physics Discussions" |
|---|
| 599 | ij=$(( ${ij} + 1)) |
|---|
| 600 | jlist[${ij}]="Earth Plan. Sc. Lett." |
|---|
| 601 | ij=$(( ${ij} + 1)) |
|---|
| 602 | jlist[${ij}]="J. Mar. Res." |
|---|
| 603 | ij=$(( ${ij} + 1)) |
|---|
| 604 | jlist[${ij}]="PCMDI Report Series" |
|---|
| 605 | ij=$(( ${ij} + 1)) |
|---|
| 606 | jlist[${ij}]="J. Mar. Syst." |
|---|
| 607 | ij=$(( ${ij} + 1)) |
|---|
| 608 | jlist[${ij}]="Note du PÎle de Modélisation" |
|---|
| 609 | ij=$(( ${ij} + 1)) |
|---|
| 610 | jlist[${ij}]="Calculateurs ParallÚles" |
|---|
| 611 | ij=$(( ${ij} + 1)) |
|---|
| 612 | jlist[${ij}]="Note Scientifique du PÎle de Modélisation" |
|---|
| 613 | ij=$(( ${ij} + 1)) |
|---|
| 614 | jlist[${ij}]="Lecture Notes in Computer Science" |
|---|
| 615 | ij=$(( ${ij} + 1)) |
|---|
| 616 | jlist[${ij}]="Prog. Oceanogr." |
|---|
| 617 | ij=$(( ${ij} + 1)) |
|---|
| 618 | jlist[${ij}]="Deep Sea Research Part I: Oceanographic Research Papers" |
|---|
| 619 | ij=$(( ${ij} + 1)) |
|---|
| 620 | jlist[${ij}]="Deep Sea Res. I" |
|---|
| 621 | ij=$(( ${ij} + 1)) |
|---|
| 622 | jlist[${ij}]="IEEE Trans. Geosci. Remote Sensing" |
|---|
| 623 | ij=$(( ${ij} + 1)) |
|---|
| 624 | jlist[${ij}]="ECMWF Tech. Memorandum" |
|---|
| 625 | ij=$(( ${ij} + 1)) |
|---|
| 626 | jlist[${ij}]="J. Environ. Radioactivity" |
|---|
| 627 | ij=$(( ${ij} + 1)) |
|---|
| 628 | jlist[${ij}]="Int. WOCE Newsletter" |
|---|
| 629 | ij=$(( ${ij} + 1)) |
|---|
| 630 | jlist[${ij}]="C. R. Acad. Sci. Paris" |
|---|
| 631 | ij=$(( ${ij} + 1)) |
|---|
| 632 | jlist[${ij}]="C. R. Acad. Sci. Paris, Earth and Planetary Sciences" |
|---|
| 633 | ij=$(( ${ij} + 1)) |
|---|
| 634 | jlist[${ij}]="In The mathematics of models for climatology and environment" |
|---|
| 635 | ij=$(( ${ij} + 1)) |
|---|
| 636 | jlist[${ij}]="Oceanol. Acta" |
|---|
| 637 | ij=$(( ${ij} + 1)) |
|---|
| 638 | jlist[${ij}]="The global atmosphere and ocean system" |
|---|
| 639 | ij=$(( ${ij} + 1)) |
|---|
| 640 | jlist[${ij}]="NATO Advanced Study Institute" |
|---|
| 641 | ij=$(( ${ij} + 1)) |
|---|
| 642 | jlist[${ij}]="WCRP" |
|---|
| 643 | ij=$(( ${ij} + 1)) |
|---|
| 644 | jlist[${ij}]="The Courier" |
|---|
| 645 | ij=$(( ${ij} + 1)) |
|---|
| 646 | jlist[${ij}]="Elsevier Oceanography Series" |
|---|
| 647 | ij=$(( ${ij} + 1)) |
|---|
| 648 | jlist[${ij}]="In Conference Proceedings of the 1988 International Conference on Supercomputing" |
|---|
| 649 | ij=$(( ${ij} + 1)) |
|---|
| 650 | jlist[${ij}]="In Science and engineering on Cray Supercomputers" |
|---|
| 651 | ij=$(( ${ij} + 1)) |
|---|
| 652 | jlist[${ij}]="In Modeling the Earth's Climate and its Variability" |
|---|
| 653 | ij=$(( ${ij} + 1)) |
|---|
| 654 | jlist[${ij}]="Fish. Oceanogr." |
|---|
| 655 | ij=$(( ${ij} + 1)) |
|---|
| 656 | jlist[${ij}]="Q. J. R. Meteor. Soc." |
|---|
| 657 | ij=$(( ${ij} + 1)) |
|---|
| 658 | jlist[${ij}]="In High performance computing in the geosciences" |
|---|
| 659 | ij=$(( ${ij} + 1)) |
|---|
| 660 | jlist[${ij}]="Int. J. Numer. Meth. in Fluids" |
|---|
| 661 | ij=$(( ${ij} + 1)) |
|---|
| 662 | jlist[${ij}]="Lecture notes in Physics" |
|---|
| 663 | ij=$(( ${ij} + 1)) |
|---|
| 664 | jlist[${ij}]="J. Meteorol. Soc. Japan" |
|---|
| 665 | ij=$(( ${ij} + 1)) |
|---|
| 666 | jlist[${ij}]="Journal of Marine Systems" |
|---|
| 667 | ij=$(( ${ij} + 1)) |
|---|
| 668 | jlist[${ij}]="Canadian Journal of Fisheries and Aquatic Sciences" |
|---|
| 669 | ij=$(( ${ij} + 1)) |
|---|
| 670 | jlist[${ij}]="J. Atmos. Ocean. Tech." |
|---|
| 671 | ij=$(( ${ij} + 1)) |
|---|
| 672 | jlist[${ij}]="EOS" |
|---|
| 673 | ij=$(( ${ij} + 1)) |
|---|
| 674 | jlist[${ij}]="Nature" |
|---|
| 675 | ij=$(( ${ij} + 1)) |
|---|
| 676 | jlist[${ij}]="Nature Geosciences" |
|---|
| 677 | ij=$(( ${ij} + 1)) |
|---|
| 678 | jlist[${ij}]="Physics and Chemistry of the Earth, Part B: Hydrology, Oceans and Atmosphere" |
|---|
| 679 | ij=$(( ${ij} + 1)) |
|---|
| 680 | jlist[${ij}]="Journal of Atmospheric and Oceanic Technology" |
|---|
| 681 | ij=$(( ${ij} + 1)) |
|---|
| 682 | jlist[${ij}]="Lecture Notes in Computational Science Engineering" |
|---|
| 683 | ij=$(( ${ij} + 1)) |
|---|
| 684 | jlist[${ij}]="In Greenhouse Gas Control Technologies" |
|---|
| 685 | ij=$(( ${ij} + 1)) |
|---|
| 686 | jlist[${ij}]="Chemical Geology" |
|---|
| 687 | ij=$(( ${ij} + 1)) |
|---|
| 688 | jlist[${ij}]="Marine Geology" |
|---|
| 689 | ij=$(( ${ij} + 1)) |
|---|
| 690 | jlist[${ij}]="Developments in Paleoenvironmental Research" |
|---|
| 691 | ij=$(( ${ij} + 1)) |
|---|
| 692 | jlist[${ij}]=" Developments in Earth and Environmental Sciences" |
|---|
| 693 | ij=$(( ${ij} + 1)) |
|---|
| 694 | jlist[${ij}]="Science" |
|---|
| 695 | ij=$(( ${ij} + 1)) |
|---|
| 696 | jlist[${ij}]="In Mediterranean Climate Variability" |
|---|
| 697 | ij=$(( ${ij} + 1)) |
|---|
| 698 | jlist[${ij}]="Global and Planetary Change" |
|---|
| 699 | ij=$(( ${ij} + 1)) |
|---|
| 700 | jlist[${ij}]="Physical Review Letters" |
|---|
| 701 | ij=$(( ${ij} + 1)) |
|---|
| 702 | jlist[${ij}]="Progress In Oceanography" |
|---|
| 703 | ij=$(( ${ij} + 1)) |
|---|
| 704 | jlist[${ij}]="Climatic Change" |
|---|
| 705 | ij=$(( ${ij} + 1)) |
|---|
| 706 | jlist[${ij}]="Ocean Dynamics" |
|---|
| 707 | ij=$(( ${ij} + 1)) |
|---|
| 708 | jlist[${ij}]="Phil. Trans. Roy. Soc. A" |
|---|
| 709 | ij=$(( ${ij} + 1)) |
|---|
| 710 | jlist[${ij}]="Phil. Trans. Roy. Soc. B" |
|---|
| 711 | ij=$(( ${ij} + 1)) |
|---|
| 712 | jlist[${ij}]="Izvestiya Atmospheric and Oceanic Physics" |
|---|
| 713 | ij=$(( ${ij} + 1)) |
|---|
| 714 | jlist[${ij}]="Journal of Hydrometeorology" |
|---|
| 715 | ij=$(( ${ij} + 1)) |
|---|
| 716 | jlist[${ij}]="Journal of Hydrology" |
|---|
| 717 | ij=$(( ${ij} + 1)) |
|---|
| 718 | jlist[${ij}]="Remote Sensing of Environment" |
|---|
| 719 | ij=$(( ${ij} + 1)) |
|---|
| 720 | jlist[${ij}]="Remote Sensing Env." |
|---|
| 721 | ij=$(( ${ij} + 1)) |
|---|
| 722 | jlist[${ij}]="Oceanology" |
|---|
| 723 | ij=$(( ${ij} + 1)) |
|---|
| 724 | jlist[${ij}]="Water Resour. Res." |
|---|
| 725 | ij=$(( ${ij} + 1)) |
|---|
| 726 | jlist[${ij}]="Water Resources Research" |
|---|
| 727 | ij=$(( ${ij} + 1)) |
|---|
| 728 | jlist[${ij}]="Advances in Atmospheric Sciences" |
|---|
| 729 | ij=$(( ${ij} + 1)) |
|---|
| 730 | jlist[${ij}]="Quaternary Science Reviews" |
|---|
| 731 | ij=$(( ${ij} + 1)) |
|---|
| 732 | jlist[${ij}]="AGU monograph Ocean Circulation Mechanisms and Impacts" |
|---|
| 733 | ij=$(( ${ij} + 1)) |
|---|
| 734 | jlist[${ij}]="Climate Research" |
|---|
| 735 | ij=$(( ${ij} + 1)) |
|---|
| 736 | jlist[${ij}]="Colloque du GIS « Climat-Environnement-Sociétés »" |
|---|
| 737 | ij=$(( ${ij} + 1)) |
|---|
| 738 | jlist[${ij}]="Agricultural and Forest Meteorology" |
|---|
| 739 | ij=$(( ${ij} + 1)) |
|---|
| 740 | jlist[${ij}]="VIIth IAHS Scientific Assembly" |
|---|
| 741 | ij=$(( ${ij} + 1)) |
|---|
| 742 | jlist[${ij}]="AGU fall Meeting" |
|---|
| 743 | ij=$(( ${ij} + 1)) |
|---|
| 744 | jlist[${ij}]="4th Alexander Von Humboldt International Conference" |
|---|
| 745 | ij=$(( ${ij} + 1)) |
|---|
| 746 | jlist[${ij}]="International Journal of Climatology" |
|---|
| 747 | ij=$(( ${ij} + 1)) |
|---|
| 748 | jlist[${ij}]="Revue de l'Ãnergie" |
|---|
| 749 | ij=$(( ${ij} + 1)) |
|---|
| 750 | jlist[${ij}]="Hydrol. Earth Sys. Sci." |
|---|
| 751 | ij=$(( ${ij} + 1)) |
|---|
| 752 | jlist[${ij}]="Ambio" |
|---|
| 753 | ij=$(( ${ij} + 1)) |
|---|
| 754 | jlist[${ij}]="Theoretical and applied climatology" |
|---|
| 755 | ij=$(( ${ij} + 1)) |
|---|
| 756 | jlist[${ij}]="Remote Sensing of Environnement" |
|---|
| 757 | ij=$(( ${ij} + 1)) |
|---|
| 758 | jlist[${ij}]="PNAS" |
|---|
| 759 | ij=$(( ${ij} + 1)) |
|---|
| 760 | jlist[${ij}]="Lettre PIGB-PMRC" |
|---|
| 761 | ij=$(( ${ij} + 1)) |
|---|
| 762 | jlist[${ij}]="High Performance Computing in Science and Engineering" |
|---|
| 763 | ij=$(( ${ij} + 1)) |
|---|
| 764 | jlist[${ij}]="High Performance Computing in Science and Engineering '08" |
|---|
| 765 | ij=$(( ${ij} + 1)) |
|---|
| 766 | jlist[${ij}]="High Performance Computing on Vector Systems 2006" |
|---|
| 767 | ij=$(( ${ij} + 1)) |
|---|
| 768 | jlist[${ij}]="High Performance Computing on Vector Systems 2007" |
|---|
| 769 | ij=$(( ${ij} + 1)) |
|---|
| 770 | jlist[${ij}]="Annals of Glaciology" |
|---|
| 771 | ij=$(( ${ij} + 1)) |
|---|
| 772 | jlist[${ij}]="Oceanography" |
|---|
| 773 | ij=$(( ${ij} + 1)) |
|---|
| 774 | jlist[${ij}]="Journal of Physical Oceanography" |
|---|
| 775 | ij=$(( ${ij} + 1)) |
|---|
| 776 | jlist[${ij}]="In Deep convection and deep water formation in the oceans" |
|---|
| 777 | ij=$(( ${ij} + 1)) |
|---|
| 778 | jlist[${ij}]="Journal of Applied Meteorology and Climatology" |
|---|
| 779 | ij=$(( ${ij} + 1)) |
|---|
| 780 | jlist[${ij}]="Geochem. Geophys. Geosyst." |
|---|
| 781 | ij=$(( ${ij} + 1)) |
|---|
| 782 | jlist[${ij}]="Environmental Fluid Mechanics" |
|---|
| 783 | ij=$(( ${ij} + 1)) |
|---|
| 784 | jlist[${ij}]="Continental Shelf Research" |
|---|
| 785 | ij=$(( ${ij} + 1)) |
|---|
| 786 | jlist[${ij}]="Marine Pollution Bulletin" |
|---|
| 787 | ij=$(( ${ij} + 1)) |
|---|
| 788 | jlist[${ij}]="Comptes Rendus Geosciences" |
|---|
| 789 | ij=$(( ${ij} + 1)) |
|---|
| 790 | #jlist[${ij}]="Earth and Planetary Sciences, série IIa, Paris" |
|---|
| 791 | jlist[${ij}]="Earth and Planetary Sciences, série IIa, Paris" |
|---|
| 792 | ij=$(( ${ij} + 1)) |
|---|
| 793 | jlist[${ij}]="??" |
|---|
| 794 | # |
|---|
| 795 | # following Journal name are fake ones for demo1 : references extracted from |
|---|
| 796 | # Cantratrix Sopronica L. written by Georges Perec |
|---|
| 797 | #find in http://www-rocq.inria.fr/who/Marc.Thiriet/PsFil/Biblio/cantatrix.ps |
|---|
| 798 | ij=$(( ${ij} + 1)) |
|---|
| 799 | jlist[${ij}]="Res. Proc. neurophysiol. Fanatic Soc." |
|---|
| 800 | ij=$(( ${ij} + 1)) |
|---|
| 801 | jlist[${ij}]="New Records Ass. J." |
|---|
| 802 | ij=$(( ${ij} + 1)) |
|---|
| 803 | jlist[${ij}]="Am. J. Allegrol." |
|---|
| 804 | ij=$(( ${ij} + 1)) |
|---|
| 805 | jlist[${ij}]="J. Neurochem. Neurocytol. Enzymol." |
|---|
| 806 | ij=$(( ${ij} + 1)) |
|---|
| 807 | jlist[${ij}]="Hammersmith J." |
|---|
| 808 | ij=$(( ${ij} + 1)) |
|---|
| 809 | jlist[${ij}]="Nasa Rept." |
|---|
| 810 | ij=$(( ${ij} + 1)) |
|---|
| 811 | jlist[${ij}]="C.r. Assoc. Conc. Lam." |
|---|
| 812 | ij=$(( ${ij} + 1)) |
|---|
| 813 | jlist[${ij}]="Gaz. med. franco-rus." |
|---|
| 814 | ij=$(( ${ij} + 1)) |
|---|
| 815 | jlist[${ij}]="Amer. J. music. Deficiency" |
|---|
| 816 | # |
|---|
| 817 | # strip comments and blank lines |
|---|
| 818 | fileraw_strict=${tmpdir}/$(basename ${fileraw})_strict |
|---|
| 819 | grep -v "^#" ${fileraw} | grep -v "^%" | sed "/^$/d" > ${fileraw_strict} |
|---|
| 820 | # following line is not compatible with XML header ++ |
|---|
| 821 | if [ "${encoding}" = "iso-8859-1" ] |
|---|
| 822 | then |
|---|
| 823 | # convert ot UTF-8 to please bibtex2xml |
|---|
| 824 | iconv -f ISO-8859-1 -t UTF-8 ${fileraw_strict} > ${fileraw_strict}2 |
|---|
| 825 | mv ${fileraw_strict}2 ${fileraw_strict} |
|---|
| 826 | fi |
|---|
| 827 | case ${typein} in |
|---|
| 828 | bibtex) |
|---|
| 829 | fileou_bibtexml=${tmpdir}/$(basename ${fileraw})_bibtexml |
|---|
| 830 | python ${PROJECT}/external/bibtex2xml.py ${fileraw_strict} > ${fileou_bibtexml} |
|---|
| 831 | xsltproc --output ${fileou} \ |
|---|
| 832 | --param lang "'${lang}'" \ |
|---|
| 833 | --param project "'${project}'" \ |
|---|
| 834 | --param makedate "'${log_date}'" \ |
|---|
| 835 | --param order "'${order}'" \ |
|---|
| 836 | ${PROJECT}/bibtexml2dbk.xsl ${fileou_bibtexml} |
|---|
| 837 | read a |
|---|
| 838 | head ${fileou} |
|---|
| 839 | #++rm ${fileou_bibtexml} |
|---|
| 840 | ;; |
|---|
| 841 | *) |
|---|
| 842 | case ${typeout} in |
|---|
| 843 | dbk) |
|---|
| 844 | cat <<EOF > ${fileou} |
|---|
| 845 | <?xml version='1.0' encoding='ISO-8859-1'?> |
|---|
| 846 | <bibliography |
|---|
| 847 | version="5.0" |
|---|
| 848 | xmlns="http://docbook.org/ns/docbook" |
|---|
| 849 | xml:id="bib${project}ref" |
|---|
| 850 | xml:lang="${lang}"> |
|---|
| 851 | |
|---|
| 852 | <info> |
|---|
| 853 | <date>${log_date}</date> |
|---|
| 854 | </info> |
|---|
| 855 | EOF |
|---|
| 856 | ;; |
|---|
| 857 | bibtex) |
|---|
| 858 | cat <<EOF > ${fileou} |
|---|
| 859 | |
|---|
| 860 | @PREAMBLE{"bibliography of ${project}"}" |
|---|
| 861 | |
|---|
| 862 | % ${log_date} |
|---|
| 863 | |
|---|
| 864 | EOF |
|---|
| 865 | ;; |
|---|
| 866 | esac |
|---|
| 867 | totlines=$( wc -l ${fileraw_strict} | awk '{print $1}' ) |
|---|
| 868 | l=1 |
|---|
| 869 | while [ ${l} -le ${totlines} ] |
|---|
| 870 | do |
|---|
| 871 | #echo "line: ${l}" |
|---|
| 872 | # extract one line |
|---|
| 873 | line=$( sed -n ${l}p ${fileraw_strict} ) |
|---|
| 874 | orgline=$( echo ${line} | sed -e "s/--/- -/g" ) |
|---|
| 875 | line=$( echo ${line} | sed -e "s/</\</g" -e "s/>/\>/g" ) |
|---|
| 876 | # parsing non bibtex line |
|---|
| 877 | bibtex=0 |
|---|
| 878 | # before the first : |
|---|
| 879 | tmp=${line%%:*} |
|---|
| 880 | # before the last , |
|---|
| 881 | auths=${tmp%,*}, |
|---|
| 882 | # replace " and " by "," |
|---|
| 883 | auths=$( echo "${auths}" | sed -e "s/ and /,/g" ) |
|---|
| 884 | # replace " et " by "," |
|---|
| 885 | auths=$( echo "${auths}" | sed -e "s/ et /,/g" ) |
|---|
| 886 | # after the last , |
|---|
| 887 | year=${tmp##*,} |
|---|
| 888 | year=$( rmbl "${year}" ) |
|---|
| 889 | ## first author before the first ., |
|---|
| 890 | first=${auths%%.,*}. |
|---|
| 891 | # its firstname after the last , |
|---|
| 892 | firstfn=${first##*,} |
|---|
| 893 | firstfn=$( rmbl "${firstfn}" ) |
|---|
| 894 | # its surname ; before the first , |
|---|
| 895 | firstsn=${first%%,*} |
|---|
| 896 | firstsn=$( rmbl "${firstsn}" ) |
|---|
| 897 | ## ref id |
|---|
| 898 | firstsn_flat=$( echo "${firstsn}" | recode -d -f ISO-8859-15..flat ) |
|---|
| 899 | # echo "firstsn : ${firstsn}" # ++ debug |
|---|
| 900 | # echo "firstsn_flat : ${firstsn_flat}" #++ debug |
|---|
| 901 | # test if no encoding problem after ISO-8859-15 to flat conversion |
|---|
| 902 | firstsn_test1=$(echo "${firstsn_flat}" | tr -d "[:alpha:]" | tr -d " " | tr -d "'" | tr -d "-" | tr -d ".") |
|---|
| 903 | # echo "firstsn_test1 : ${firstsn_test1}" # ++ debug |
|---|
| 904 | if [ ! -z "${firstsn_test1}" ] |
|---|
| 905 | then |
|---|
| 906 | echo "www : pb on ISO-8859-15 to flat conversion" |
|---|
| 907 | echo "www : on ${firstsn}" |
|---|
| 908 | echo "www : trying UTF-8 to flat conversion ..." |
|---|
| 909 | firstsn_flat=$( echo "${firstsn}" | recode -d -f UTF-8..flat ) |
|---|
| 910 | # test if no encoding problem after UTF-8 to flat conversion |
|---|
| 911 | firstsn_test2=$(echo "${firstsn_flat}" | tr -d "[:alpha:]" | tr -d " " | tr -d "'") |
|---|
| 912 | #echo "firstsn_test2 : A${firstsn_test2}A" # ++ debug |
|---|
| 913 | if [ ! -z "${firstsn_test2}" ] |
|---|
| 914 | then |
|---|
| 915 | echo "eee : pb on flat conversion of ${firstsn}" |
|---|
| 916 | exit 1 |
|---|
| 917 | fi |
|---|
| 918 | fi |
|---|
| 919 | firstsn_lower=$( echo "${firstsn_flat}" | tr "[:upper:]" "[:lower:]") |
|---|
| 920 | firstsn_nopunct=$( echo "${firstsn_lower}" | tr -s " " "_" | tr -s "'" "_") |
|---|
| 921 | refid="${firstsn_nopunct}${year}" |
|---|
| 922 | unset firstsn_lower |
|---|
| 923 | unset firstsn_flat |
|---|
| 924 | unset firstsn_test1 |
|---|
| 925 | unset firstsn_test2 |
|---|
| 926 | # look for id of biblio entry to produce a unique one |
|---|
| 927 | case ${typeout} in |
|---|
| 928 | dbk) |
|---|
| 929 | num=$( grep -c "<biblioentry xml:id=\"${refid}_[0-9][0-9]\">" ${fileou} ) |
|---|
| 930 | ;; |
|---|
| 931 | bibtex) |
|---|
| 932 | num=$( grep -c "@.*{${refid}_[0-9][0-9]," ${fileou} ) |
|---|
| 933 | ;; |
|---|
| 934 | esac |
|---|
| 935 | num=$(( ${num} + 1 )) |
|---|
| 936 | [ ${num} -le 9 ] && num=0${num} |
|---|
| 937 | refid=${refid}_${num} |
|---|
| 938 | hasauthor=1 |
|---|
| 939 | case ${typeout} in |
|---|
| 940 | dbk) |
|---|
| 941 | cat <<EOF >> ${fileou} |
|---|
| 942 | <biblioentry xml:id="${refid}"> |
|---|
| 943 | <!-- date $( date -u +"%Y%m%dT%H%M%SZ" ) --> |
|---|
| 944 | <!-- original text |
|---|
| 945 | ${orgline} |
|---|
| 946 | --> |
|---|
| 947 | EOF |
|---|
| 948 | ;; |
|---|
| 949 | bibtex) |
|---|
| 950 | cat <<EOF >> ${fileou} |
|---|
| 951 | % |
|---|
| 952 | % date $( date -u +"%Y%m%dT%H%M%SZ" ) |
|---|
| 953 | % original text : |
|---|
| 954 | % ${orgline} |
|---|
| 955 | % |
|---|
| 956 | @article{${refid}, |
|---|
| 957 | EOF |
|---|
| 958 | ;; |
|---|
| 959 | esac |
|---|
| 960 | if [ ${hasauthor} -eq 1 ] |
|---|
| 961 | then |
|---|
| 962 | case ${typeout} in |
|---|
| 963 | dbk) |
|---|
| 964 | cat <<EOF >> ${fileou} |
|---|
| 965 | <authorgroup> |
|---|
| 966 | <author> <personname> <surname>${firstsn}</surname> <firstname>${firstfn}</firstname> </personname> </author> |
|---|
| 967 | EOF |
|---|
| 968 | ;; |
|---|
| 969 | bibtex) |
|---|
| 970 | cat <<EOF >> ${fileou} |
|---|
| 971 | author = {${firstsn}, ${firstfn}}, |
|---|
| 972 | EOF |
|---|
| 973 | ;; |
|---|
| 974 | esac |
|---|
| 975 | ## other authors.. |
|---|
| 976 | if [ ${bibtex} -eq 0 ] |
|---|
| 977 | then |
|---|
| 978 | previous=${first}, |
|---|
| 979 | # next authors... |
|---|
| 980 | next=${auths##*${previous}} |
|---|
| 981 | fi |
|---|
| 982 | if [ ${bibtex} -eq 1 ] |
|---|
| 983 | then |
|---|
| 984 | previous=${first}"and " |
|---|
| 985 | # next authors... |
|---|
| 986 | #echo "auths ${auths}" |
|---|
| 987 | next=${auths##*${previous}} |
|---|
| 988 | if [ "${next}and " = "${previous}" ] |
|---|
| 989 | then |
|---|
| 990 | next="" |
|---|
| 991 | fi |
|---|
| 992 | fi |
|---|
| 993 | #echo "previous ${previous}" |
|---|
| 994 | #echo "next ${next}" |
|---|
| 995 | # while the next author is not empty |
|---|
| 996 | while [ "${next}" != "" ] |
|---|
| 997 | do |
|---|
| 998 | if [ ${bibtex} -eq 0 ] |
|---|
| 999 | then |
|---|
| 1000 | # get the first next author; before the first , |
|---|
| 1001 | next=${next%%,*} |
|---|
| 1002 | # its surname ; after the last . |
|---|
| 1003 | nextsn=${next##*.} |
|---|
| 1004 | nextsn=$( rmbl "${nextsn}" ) |
|---|
| 1005 | # its firstname ; before the last . |
|---|
| 1006 | nextfn=${next%.*}. |
|---|
| 1007 | nextfn=$( rmbl "${nextfn}" ) |
|---|
| 1008 | fi |
|---|
| 1009 | if [ ${bibtex} -eq 1 ] |
|---|
| 1010 | then |
|---|
| 1011 | # get the first next author; before the first "and" |
|---|
| 1012 | next=${next%%and *} |
|---|
| 1013 | # its surname after the last " " |
|---|
| 1014 | # ++ pas vrai double nom et pb blanc dans la syntaxe |
|---|
| 1015 | # nextsn=${next##* } . |
|---|
| 1016 | # ok en interactif . pas ok en script |
|---|
| 1017 | nextsn=$( echo ${next} | awk '{print $2}') |
|---|
| 1018 | #echo "nextsn ${nextsn}" |
|---|
| 1019 | # its nextname before the first " " |
|---|
| 1020 | nextfn=${next%% *} |
|---|
| 1021 | fi |
|---|
| 1022 | # |
|---|
| 1023 | case ${typeout} in |
|---|
| 1024 | dbk) |
|---|
| 1025 | echo " <author> <personname> <surname>${nextsn}</surname> <firstname>${nextfn}</firstname> </personname> </author>" >> ${fileou} |
|---|
| 1026 | ;; |
|---|
| 1027 | bibtex) |
|---|
| 1028 | echo "author = {${nextsn}, ${nextfn}}," >> ${fileou} |
|---|
| 1029 | ;; |
|---|
| 1030 | esac |
|---|
| 1031 | if [ ${bibtex} -eq 0 ] |
|---|
| 1032 | then |
|---|
| 1033 | previous=${next}, |
|---|
| 1034 | next=${auths##*${previous}} |
|---|
| 1035 | fi |
|---|
| 1036 | if [ ${bibtex} -eq 1 ] |
|---|
| 1037 | then |
|---|
| 1038 | previous=${next}"and " |
|---|
| 1039 | next=${auths##*${previous}} |
|---|
| 1040 | fi |
|---|
| 1041 | done |
|---|
| 1042 | case ${typeout} in |
|---|
| 1043 | dbk) |
|---|
| 1044 | echo " </authorgroup>" >> ${fileou} |
|---|
| 1045 | ;; |
|---|
| 1046 | esac |
|---|
| 1047 | fi |
|---|
| 1048 | # end of the line ; after the first : |
|---|
| 1049 | endline=${line#*:} |
|---|
| 1050 | ## find the journal |
|---|
| 1051 | j=1 |
|---|
| 1052 | jfound="" |
|---|
| 1053 | jlistsize=${#jlist[@]} |
|---|
| 1054 | while [[ ${j} -le ${jlistsize} && "${jfound}" = "" ]] |
|---|
| 1055 | do |
|---|
| 1056 | ok=$( echo ${endline} | grep -ci "${jlist[j]} *," ) |
|---|
| 1057 | [ ${ok} -eq 1 ] && jfound="${jlist[j]}" |
|---|
| 1058 | j=$(( ${j} + 1 )) |
|---|
| 1059 | done |
|---|
| 1060 | unset ok |
|---|
| 1061 | if [ "${jfound}" = "" ] |
|---|
| 1062 | then |
|---|
| 1063 | echo "eee: Journal not found " |
|---|
| 1064 | echo "${endline}" |
|---|
| 1065 | # uncomment next line for debug |
|---|
| 1066 | # set # ++ debug |
|---|
| 1067 | exit 1 |
|---|
| 1068 | #+++ following lines are not yet validate |
|---|
| 1069 | # it might be a book, a manual, a conference, etc. ++ |
|---|
| 1070 | case ${typeout} in |
|---|
| 1071 | dbk) |
|---|
| 1072 | echo " <title>${title}</title>" >> ${fileou} |
|---|
| 1073 | cat <<EOF >> ${fileou} |
|---|
| 1074 | <biblioset relation="nojournal"> |
|---|
| 1075 | <title>${title}</title> |
|---|
| 1076 | <pagenums>${pag}</pagenums> |
|---|
| 1077 | <pubdate>${year}</pubdate> |
|---|
| 1078 | </biblioset> |
|---|
| 1079 | </biblioentry> |
|---|
| 1080 | EOF |
|---|
| 1081 | ;; |
|---|
| 1082 | bibtex) |
|---|
| 1083 | echo "title = {${title}}," >> ${fileou} |
|---|
| 1084 | echo "pages = {${pag}}," >> ${fileou} |
|---|
| 1085 | echo "year = {${year}}" >> ${fileou} |
|---|
| 1086 | echo "}" >> ${fileou} |
|---|
| 1087 | ;; |
|---|
| 1088 | esac |
|---|
| 1089 | # end of if jfound empty (ie not an article) |
|---|
| 1090 | fi |
|---|
| 1091 | if [ "${jfound}" != "" ] |
|---|
| 1092 | then |
|---|
| 1093 | ## title |
|---|
| 1094 | # before the first : |
|---|
| 1095 | title=${endline%%${jfound}*} |
|---|
| 1096 | title=$( cleanname "${title}" ) |
|---|
| 1097 | case ${typeout} in |
|---|
| 1098 | dbk) |
|---|
| 1099 | echo " <title>${title}</title>" >> ${fileou} |
|---|
| 1100 | ;; |
|---|
| 1101 | bibtex) |
|---|
| 1102 | echo "title = {${title}}," >> ${fileou} |
|---|
| 1103 | ;; |
|---|
| 1104 | esac |
|---|
| 1105 | ## end |
|---|
| 1106 | ## end of the line ; after the first ${jfound} |
|---|
| 1107 | endline=${endline#*${jfound}} |
|---|
| 1108 | endline=$( cleanname "${endline}" ) |
|---|
| 1109 | ## doi |
|---|
| 1110 | endline=$( echo ${endline} | sed -e "s/[dD][oO][iI] *\t* *: *\t* */doi:/" ) |
|---|
| 1111 | #echo "endline for doi ${endline}" |
|---|
| 1112 | ok=$( echo ${endline} | grep -ic "doi:" ) |
|---|
| 1113 | if [ ${ok} -eq 1 ] |
|---|
| 1114 | then |
|---|
| 1115 | doi=${endline##*doi:} |
|---|
| 1116 | #echo "doi : ${doi}" |
|---|
| 1117 | case ${typeout} in |
|---|
| 1118 | dbk) |
|---|
| 1119 | echo " <biblioid class=\"doi\">${doi}</biblioid>" >> ${fileou} |
|---|
| 1120 | ;; |
|---|
| 1121 | bibtex) |
|---|
| 1122 | echo "doi={${doi}}," >> ${fileou} |
|---|
| 1123 | ;; |
|---|
| 1124 | esac |
|---|
| 1125 | unset doi |
|---|
| 1126 | endline=${endline%doi:*} |
|---|
| 1127 | endline=$( cleanname "${endline}" ) |
|---|
| 1128 | else |
|---|
| 1129 | echo "non doi: ${line}" |
|---|
| 1130 | echo "" |
|---|
| 1131 | fi |
|---|
| 1132 | num=$( echo "${endline}" | tr -dc "," | wc -c | tr -d " ") |
|---|
| 1133 | case "${num}" in |
|---|
| 1134 | 0) |
|---|
| 1135 | ## echo ${num}: ${endline} |
|---|
| 1136 | case ${typeout} in |
|---|
| 1137 | dbk) |
|---|
| 1138 | cat <<EOF >> ${fileou} |
|---|
| 1139 | <biblioset relation="journal"> |
|---|
| 1140 | <title>${jfound}</title> |
|---|
| 1141 | <pubdate>${year}</pubdate> |
|---|
| 1142 | <bibliomisc>${endline}</bibliomisc> |
|---|
| 1143 | </biblioset> |
|---|
| 1144 | EOF |
|---|
| 1145 | ;; |
|---|
| 1146 | bibtex) |
|---|
| 1147 | cat <<EOF >> ${fileou} |
|---|
| 1148 | journal = {${jfound}}, |
|---|
| 1149 | year = {${year}}, |
|---|
| 1150 | notes = {${endline}}, |
|---|
| 1151 | EOF |
|---|
| 1152 | ;; |
|---|
| 1153 | esac |
|---|
| 1154 | unset jfound |
|---|
| 1155 | unset year |
|---|
| 1156 | ;; |
|---|
| 1157 | 1) |
|---|
| 1158 | ### echo ${num}: ${endline} |
|---|
| 1159 | vol=${endline%,*} |
|---|
| 1160 | vol=$( cleanname "${vol}" ) |
|---|
| 1161 | pag=${endline##*,} |
|---|
| 1162 | pag=$( cleanname "${pag}" ) |
|---|
| 1163 | case ${typeout} in |
|---|
| 1164 | dbk) |
|---|
| 1165 | cat <<EOF >> ${fileou} |
|---|
| 1166 | <biblioset relation="journal"> |
|---|
| 1167 | <title>${jfound}</title> |
|---|
| 1168 | <volumenum>${vol}</volumenum><pagenums>${pag}</pagenums> |
|---|
| 1169 | <pubdate>${year}</pubdate> |
|---|
| 1170 | </biblioset> |
|---|
| 1171 | EOF |
|---|
| 1172 | ;; |
|---|
| 1173 | bibtex) |
|---|
| 1174 | echo "journal = {${jfound}}," >> ${fileou} |
|---|
| 1175 | echo "volume = {${vol}}," >> ${fileou} |
|---|
| 1176 | echo "pages = {${pag}}," >> ${fileou} |
|---|
| 1177 | echo "year = {${year}}," >> ${fileou} |
|---|
| 1178 | ;; |
|---|
| 1179 | esac |
|---|
| 1180 | ;; |
|---|
| 1181 | bibtex) |
|---|
| 1182 | unset vol |
|---|
| 1183 | unset pag |
|---|
| 1184 | unset jfound |
|---|
| 1185 | unset year |
|---|
| 1186 | ;; |
|---|
| 1187 | 2) |
|---|
| 1188 | vol=${endline%,*} |
|---|
| 1189 | vol=$( cleanname "${vol}" ) |
|---|
| 1190 | iss=${vol##*,} |
|---|
| 1191 | iss=$( cleanname "${iss}" ) |
|---|
| 1192 | vol=${vol%,*} |
|---|
| 1193 | vol=$( cleanname "${vol}" ) |
|---|
| 1194 | pag=${endline##*,} |
|---|
| 1195 | pag=$( cleanname "${pag}" ) |
|---|
| 1196 | case ${typeout} in |
|---|
| 1197 | dbk) |
|---|
| 1198 | cat <<EOF >> ${fileou} |
|---|
| 1199 | <biblioset relation="journal"> |
|---|
| 1200 | <title>${jfound}</title> |
|---|
| 1201 | <volumenum>${vol}</volumenum><issuenum>${iss}</issuenum><pagenums>${pag}</pagenums> |
|---|
| 1202 | <pubdate>${year}</pubdate> |
|---|
| 1203 | </biblioset> |
|---|
| 1204 | EOF |
|---|
| 1205 | ;; |
|---|
| 1206 | bibtex) |
|---|
| 1207 | echo "journal = {${jfound}}," >> ${fileou} |
|---|
| 1208 | echo "volume = {${vol}}," >> ${fileou} |
|---|
| 1209 | echo "number = {${iss}}," >> ${fileou} |
|---|
| 1210 | echo "pages = {${pag}}," >> ${fileou} |
|---|
| 1211 | echo "year = {${year}}," >> ${fileou} |
|---|
| 1212 | ;; |
|---|
| 1213 | esac |
|---|
| 1214 | unset vol |
|---|
| 1215 | unset pag |
|---|
| 1216 | unset jfound |
|---|
| 1217 | unset year |
|---|
| 1218 | unset iss |
|---|
| 1219 | ;; |
|---|
| 1220 | 6) |
|---|
| 1221 | conftitle=${endline%%,*} |
|---|
| 1222 | endline=${endline#*,} |
|---|
| 1223 | # day(s) month |
|---|
| 1224 | confdates=${endline%%,*} |
|---|
| 1225 | endline=${endline#*,} |
|---|
| 1226 | # day(s) month and year |
|---|
| 1227 | confdates="${confdates}, ${endline%%,*}" |
|---|
| 1228 | confdates=$( cleanname "${confdates}" ) |
|---|
| 1229 | endline=${endline#*,} |
|---|
| 1230 | # Town |
|---|
| 1231 | confaddress=${endline%%,*} |
|---|
| 1232 | endline=${endline#*,} |
|---|
| 1233 | # Town and country |
|---|
| 1234 | confaddress="${confaddress}, ${endline%%,*}" |
|---|
| 1235 | confaddress=$( cleanname "${confaddress}" ) |
|---|
| 1236 | endline=${endline#*,} |
|---|
| 1237 | publishername=${endline%%,*} |
|---|
| 1238 | publishername=$( cleanname "${publishername}" ) |
|---|
| 1239 | endline=${endline#*,} |
|---|
| 1240 | pag=${endline##*,} |
|---|
| 1241 | pag=$( cleanname "${pag}" ) |
|---|
| 1242 | #set |
|---|
| 1243 | #read a |
|---|
| 1244 | case ${typeout} in |
|---|
| 1245 | dbk) |
|---|
| 1246 | cat <<EOF >> ${fileou} |
|---|
| 1247 | <biblioset relation="conference"> |
|---|
| 1248 | <title>${jfound}</title> |
|---|
| 1249 | <pubdate>${year}</pubdate> |
|---|
| 1250 | <publisher><publishername>${publishername}</publishername></publisher> |
|---|
| 1251 | <pagenums>${pag}</pagenums> |
|---|
| 1252 | <confgroup> |
|---|
| 1253 | <conftitle>${conftitle}</conftitle> |
|---|
| 1254 | <confdates>${confdates}</confdates> |
|---|
| 1255 | <address>${confaddress}</address> |
|---|
| 1256 | </confgroup> |
|---|
| 1257 | </biblioset> |
|---|
| 1258 | EOF |
|---|
| 1259 | ;; |
|---|
| 1260 | bibtex) |
|---|
| 1261 | echo "journal = {${jfound}}," >> ${fileou} |
|---|
| 1262 | echo "year = {${year}}," >> ${fileou} |
|---|
| 1263 | echo "publisher = {${publishername}}," >> ${fileou} |
|---|
| 1264 | echo "booktitle = {${conftitle}}," >> ${fileou} |
|---|
| 1265 | echo "date = {${confdates}}," >> ${fileou} |
|---|
| 1266 | echo "address = {${confaddress}}," >> ${fileou} |
|---|
| 1267 | ;; |
|---|
| 1268 | esac |
|---|
| 1269 | unset confaddress |
|---|
| 1270 | unset conftitle |
|---|
| 1271 | unset confdates |
|---|
| 1272 | unset pag |
|---|
| 1273 | unset publishername |
|---|
| 1274 | unset year |
|---|
| 1275 | unset jfound |
|---|
| 1276 | ;; |
|---|
| 1277 | 10) |
|---|
| 1278 | publishername=${endline%%Editors,*} |
|---|
| 1279 | publishername="${publishername} Editors" |
|---|
| 1280 | publishername=$( cleanname "${publishername}" ) |
|---|
| 1281 | endline=${endline#*Editors,} |
|---|
| 1282 | vol=${endline%%,*} |
|---|
| 1283 | vol=$( cleanname "${vol}" ) |
|---|
| 1284 | endline=${endline#*,} |
|---|
| 1285 | pag=${endline%%,*} |
|---|
| 1286 | pag=$( cleanname "${pag}" ) |
|---|
| 1287 | endline=${endline#*,} |
|---|
| 1288 | isbn=${endline%%,*} |
|---|
| 1289 | isbn=$(echo ${isbn} | sed -e "s/ISBN ://") |
|---|
| 1290 | isbn=$( cleanname "${isbn}" ) |
|---|
| 1291 | endline=${endline#*,} |
|---|
| 1292 | agu=${endline%%,*} |
|---|
| 1293 | agu=$(echo ${agu} | sed -e "s/AGU ://") |
|---|
| 1294 | agu=$( cleanname "${agu}" ) |
|---|
| 1295 | endline=${endline#*${agu}} |
|---|
| 1296 | endline=$( cleanname "${endline}" ) |
|---|
| 1297 | endline=$( cleanname "${endline}" ) |
|---|
| 1298 | case ${typeout} in |
|---|
| 1299 | dbk) |
|---|
| 1300 | cat <<EOF >> ${fileou} |
|---|
| 1301 | <biblioid class="isbn">${isbn}</biblioid> |
|---|
| 1302 | <biblioid class="other" otherclass="AGU">${agu}</biblioid> |
|---|
| 1303 | <biblioset relation="journal"> |
|---|
| 1304 | <title>${jfound}</title> |
|---|
| 1305 | <pubdate>${year}</pubdate> |
|---|
| 1306 | <publisher><publishername>${publishername}</publishername></publisher> |
|---|
| 1307 | <volumenum>${vol}</volumenum> |
|---|
| 1308 | <pagenums>${pag}</pagenums> |
|---|
| 1309 | <bibliomisc>${endline}</bibliomisc> |
|---|
| 1310 | </biblioset> |
|---|
| 1311 | EOF |
|---|
| 1312 | ;; |
|---|
| 1313 | bibtex) |
|---|
| 1314 | echo "isbn= {${isbn}}," >> ${fileou} |
|---|
| 1315 | echo "agu= {${agu}}," >> ${fileou} |
|---|
| 1316 | echo "year = {${year}}," >> ${fileou} |
|---|
| 1317 | echo "journal = {${jfound}}," >> ${fileou} |
|---|
| 1318 | echo "publisher = {${publishername}}," >> ${fileou} |
|---|
| 1319 | echo "volume = {${vol}}," >> ${fileou} |
|---|
| 1320 | echo "pages = {${pag}}," >> ${fileou} |
|---|
| 1321 | echo "notes = {${endline}}," >> ${fileou} |
|---|
| 1322 | ;; |
|---|
| 1323 | esac |
|---|
| 1324 | unset isbn |
|---|
| 1325 | unset agu |
|---|
| 1326 | unset pag |
|---|
| 1327 | unset publishername |
|---|
| 1328 | unset year |
|---|
| 1329 | unset jfound |
|---|
| 1330 | unset vol |
|---|
| 1331 | ;; |
|---|
| 1332 | *) |
|---|
| 1333 | #echo "${num}: ${endline}" # ++debug |
|---|
| 1334 | #set # ++ debug |
|---|
| 1335 | #exit 1 #++ debug |
|---|
| 1336 | case ${typeout} in |
|---|
| 1337 | dbk) |
|---|
| 1338 | cat <<EOF >> ${fileou} |
|---|
| 1339 | <biblioset relation="journal"> |
|---|
| 1340 | <title>${jfound}</title> |
|---|
| 1341 | <pubdate>${year}</pubdate> |
|---|
| 1342 | <bibliomisc>${endline}</bibliomisc> |
|---|
| 1343 | </biblioset> |
|---|
| 1344 | EOF |
|---|
| 1345 | ;; |
|---|
| 1346 | bibtex) |
|---|
| 1347 | echo "journal = {${jfound}}," >> ${fileou} |
|---|
| 1348 | echo "year = {${year}}," >> ${fileou} |
|---|
| 1349 | echo "notes = {${endline}}," >> ${fileou} |
|---|
| 1350 | ;; |
|---|
| 1351 | esac |
|---|
| 1352 | ;; |
|---|
| 1353 | esac |
|---|
| 1354 | case ${typeout} in |
|---|
| 1355 | dbk) |
|---|
| 1356 | echo "</biblioentry>" >> ${fileou} |
|---|
| 1357 | ;; |
|---|
| 1358 | bibtex) |
|---|
| 1359 | echo "}" >> ${fileou} |
|---|
| 1360 | ;; |
|---|
| 1361 | esac |
|---|
| 1362 | # end of if jfound not empty |
|---|
| 1363 | fi |
|---|
| 1364 | unset title |
|---|
| 1365 | unset vol |
|---|
| 1366 | unset year |
|---|
| 1367 | unset pag |
|---|
| 1368 | l=$(( ${l} + 1 )) |
|---|
| 1369 | done |
|---|
| 1370 | unset totlines |
|---|
| 1371 | unset l |
|---|
| 1372 | case ${typeout} in |
|---|
| 1373 | dbk) |
|---|
| 1374 | echo "</bibliography>" >> ${fileou} |
|---|
| 1375 | ;; |
|---|
| 1376 | esac |
|---|
| 1377 | ;; |
|---|
| 1378 | # end of case bibtex vs other for processing |
|---|
| 1379 | esac |
|---|
| 1380 | |
|---|
| 1381 | # check conformity of fileou |
|---|
| 1382 | # if possible |
|---|
| 1383 | case ${typeout} in |
|---|
| 1384 | dbk) |
|---|
| 1385 | ${xmlcmd} val --err \ |
|---|
| 1386 | --xsd http://www.docbook.org/xml/5.0/xsd/docbook.xsd \ |
|---|
| 1387 | ${fileou} 1> xmlstarlet.log 2>&1 |
|---|
| 1388 | # |
|---|
| 1389 | # clean |
|---|
| 1390 | echo " iii : xmlstarlet.log contains sdtout and stderr from ${xmlcmd} command on ${fileou}" |
|---|
| 1391 | echo " iii : which was done just to check consistence of ${fileou}" |
|---|
| 1392 | more xmlstarlet.log |
|---|
| 1393 | ;; |
|---|
| 1394 | bibtex) |
|---|
| 1395 | echo " iii : no check conformity of bibtex file" |
|---|
| 1396 | ;; |
|---|
| 1397 | esac |
|---|
| 1398 | # |
|---|
| 1399 | case ${typein} in |
|---|
| 1400 | raw) |
|---|
| 1401 | echo " iii : ${fileraw_strict} contains a copy of input file without comments" |
|---|
| 1402 | ;; |
|---|
| 1403 | mailbody) |
|---|
| 1404 | echo " iii : ${fileraw} contains a copy of input file" |
|---|
| 1405 | echo " iii : ${fileraw_strict} contains a copy of input file without comments" |
|---|
| 1406 | ;; |
|---|
| 1407 | esac |
|---|
| 1408 | # |
|---|
| 1409 | echo " iii : you have a some new or modified bibliographic references in ${fileou} (biblioentry)" |
|---|
| 1410 | echo " iii : you can add them in ${fileou}" #++ filename path |
|---|
| 1411 | echo " iii : modify date in ${fileou}" #++ filename path |
|---|
| 1412 | echo " iii : but please take care of id last part (after underscore) that may" |
|---|
| 1413 | echo " iii : be in conflict with existing ones" #++ pour s'affranchir de ce souci il faudrait donner en entrée complémentaire le fichier à compléter. |
|---|
| 1414 | # |
|---|
| 1415 | exit 0 |
|---|
