source: trunk/doc/manuals/html/many/bibopa.sh.html @ 354

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fix thanks to coding rules; typo
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283</style>
284</head>
285<body>
286<div class="document">
287
288
289<div class="section" id="name">
290<h1>NAME</h1>
291<p>bibopa.sh - transform a bibliography file in DocBook 5 format</p>
292</div>
293<div class="section" id="synopsys">
294<h1>SYNOPSYS</h1>
295<pre class="literal-block">
296$ bibopa.sh -i filein -t type -o order -p project -l lang
297</pre>
298</div>
299<div class="section" id="description">
300<h1>DESCRIPTION</h1>
301<p>Each entry in the same input file must follows the same order for authors
302except the first one.</p>
303<p>With <tt class="docutils literal"><span class="pre">fs</span></tt> in option order you will correctly process raw entry with
304firstname and surname in this order for authors except the first one.</p>
305<p>If raw entry uses surname and firstname order, you should use <tt class="docutils literal"><span class="pre">sf</span></tt>.</p>
306<pre class="literal-block">
307Behera, S. K., J. Luo, S. Masson, S. Rao, S. Gualdi, P. Delecluse, A.
308Navarra and T. Yamagata, 2004 : Paramount Impact of the Indian Ocean
309Dipole on the East African Short Rains: A CGCM Study, J. Climate, In
310press.
311</pre>
312<p>donnerait</p>
313<pre class="literal-block">
314&lt;biblioentry xml:id=&quot;behara2004&quot;&gt;
315&lt;authorgroup&gt;
316&lt;author&gt;&lt;surname&gt;Behera&lt;/surname&gt; &lt;firstname&gt;S. K.&lt;/firstname&gt; &lt;/author&gt;
317&lt;author&gt;&lt;firstname&gt;J.&lt;/firstname&gt; &lt;surname&gt;Luo&lt;/surname&gt;&lt;/author&gt;
318&lt;author&gt;&lt;firstname&gt;S.&lt;/firstname&gt; &lt;surname&gt;Masson&lt;/surname&gt;&lt;/author&gt;
319&lt;author&gt;&lt;firstname&gt;S.&lt;/firstname&gt; &lt;surname&gt;Rao&lt;/surname&gt;&lt;/author&gt;
320&lt;author&gt;&lt;firstname&gt;S.&lt;/firstname&gt; &lt;surname&gt;Gualdi&lt;/surname&gt;&lt;/author&gt;
321&lt;author&gt;&lt;firstname&gt;P.&lt;/firstname&gt; &lt;surname&gt;Delecluse&lt;/surname&gt;&lt;/author&gt;
322&lt;author&gt;&lt;firstname&gt;A.&lt;/firstname&gt; &lt;surname&gt;Navara&lt;/surname&gt;&lt;/author&gt;
323&lt;author&gt;&lt;firstname&gt;T.&lt;/firstname&gt; &lt;surname&gt;Yamagata&lt;/surname&gt;&lt;/author&gt;
324&lt;/authorgroup&gt;
325&lt;date&gt;2004&lt;/date&gt;
326&lt;title&gt;Paramount Impact of the Indian Ocean Dipole on the East African
327Short Rains: A CGCM Study&lt;/title&gt;
328&lt;publishername&gt;J. Climate&lt;/publishername&gt;
329&lt;biblioid class=&quot;doi&quot;&gt;doi&lt;/biblioid&gt;
330&lt;bibliomisc role=&quot;pseudoref&quot;&gt;In press.&lt;/bibliomisc&gt;
331&lt;bibliomisc role=&quot;internalref&quot;&gt;from
332http://www.lodyc.jussieu.fr/~opatlod/NEMO_v1/6_Menu/2_page/index.html
3332007-03-29T16:24:31Z fplod by hand&lt;/bibliomisc&gt;
334&lt;/biblioentry&gt;
335</pre>
336<pre class="literal-block">
337&#64;book{MetReiCoh2004 ,
338   author    = {Michael Metcalf and
339           John Reid and Malcolm Cohen},
340   title     = {Fortran 95/2003 explained},
341   year      = {2004},
342   publisher = {Oxford University Press},
343   edition   = {Third},
344   ISBN      = {0-19-852693-8},
345   pages = {434}
346}
347</pre>
348<p>donnerait</p>
349<pre class="literal-block">
350&lt;biblioentry xml:id=&quot;MetReiCoh2004&quot;&gt;
351&lt;authorgroup&gt;
352&lt;author&gt;&lt;firstname&gt;Michael&lt;/firstname&gt; &lt;surname&gt;Metcalf&lt;/surname&gt;&lt;/author&gt;
353&lt;author&gt;&lt;firstname&gt;John&lt;/firstname&gt; &lt;surname&gt;Reid&lt;/surname&gt;&lt;/author&gt;
354&lt;author&gt;&lt;firstname&gt;Malcolm&lt;/firstname&gt; &lt;surname&gt;Cohen&lt;/surname&gt;&lt;/author&gt;
355&lt;/authorgroup&gt;
356&lt;date&gt;2004}&lt;/date&gt;
357&lt;title&gt;Fortran 95/2003 explained&lt;/title&gt;
358&lt;publisher&gt;&lt;publishername&gt;Oxford University Press&lt;/publishername&gt;&lt;/publisher&gt;
359&lt;biblioid class=&quot;isbn&quot;&gt;0-19-852693-8&lt;/biblioid&gt;
360&lt;pagenums&gt;434&lt;/pagenums&gt;
361&lt;edition&gt;Third&lt;/edition&gt;
362</pre>
363</div>
364<div class="section" id="examples">
365<h1>EXAMPLES</h1>
366<p>To transform the NEMO bibliography file in raw format:</p>
367<pre class="literal-block">
368$ ./bibopa.sh -p birefnemo -i data/biball.txt -t raw
369</pre>
370<p>To transform a bibliography file in mailbody format:</p>
371<pre class="literal-block">
372$ ./bibopa.sh -p bibrefnemo -i data/mail2007-05-10T09:01:56Z -t mailbody
373</pre>
374<p>To transform a bibliography file in bibtex format in french:</p>
375<pre class="literal-block">
376$ ./bibopa.sh -p polyfortran -i data/petitpolyfp.bib -t bibtex -l fr
377</pre>
378<p>To transform the SUPERBIB demo bibliography file in raw format:</p>
379<pre class="literal-block">
380$ ./bibopa.sh -p demo1 -i data/bibdemo1.txt -t raw -l fr
381</pre>
382</div>
383<div class="section" id="see-also">
384<h1>SEE ALSO</h1>
385<p><a class="reference external" href="mailtouser.sh.html">mailtouser.sh</a></p>
386</div>
387<div class="section" id="files">
388<h1>FILES</h1>
389<div class="section" id="original-location">
390<h2>original location</h2>
391<p>/usr/home/fplod/incas/bibnemo/src/bibnemomaf/bibopa.sh sur cerbere.locean-ipsl.upmc.fr</p>
392</div>
393</div>
394<div class="section" id="todo">
395<h1>TODO</h1>
396<p>gestion des comments</p>
397<p>gestion des id existants (cf à la fin)</p>
398<p>option debug</p>
399<p>should use iconv instead of recode
400for portability issue but not found yet the &quot;flat&quot; functionality in
401iconv</p>
402<p>write something in the logfile !</p>
403</div>
404<div class="section" id="evolutions">
405<h1>EVOLUTIONS</h1>
406<p>$Id: bibopa.sh 80 2008-10-30 09:10:11Z pinsard $</p>
407<ul class="simple">
408<li>fplod 2009-01-15T10:36:18Z aedon.locean-ipsl.upmc.fr (Darwin)<ul>
409<li>add description of <tt class="docutils literal"><span class="pre">-o</span></tt> option</li>
410<li>add journal &quot;PNAS&quot;</li>
411<li>add journal &quot;Lettre PIGB-PMRC&quot;</li>
412</ul>
413</li>
414<li>fplod 2009-01-14T15:27:48Z aedon.locean-ipsl.upmc.fr (Darwin)<ul>
415<li>add journal &quot;Water Resources Research&quot;</li>
416<li>add journal &quot;Climate Research&quot;</li>
417<li>add conf &quot;Colloque du GIS « Climat-Environnement-Sociétés »&quot;</li>
418<li>add journal &quot;Agricultural and Forest Meteorology&quot;</li>
419<li>add conf &quot;VIIth IAHS Scientific Assembly&quot;</li>
420<li>add conf &quot;AGU fall Meeting&quot;</li>
421<li>add journal &quot;Phil. Trans. Roy. Soc. B&quot;</li>
422<li>add journal &quot;Phil. Trans. Roy. Soc. B&quot;</li>
423<li>add conf &quot;4th Alexander Von Humboldt International Conference&quot;</li>
424<li>add journal/conf &quot;??&quot; (Should not be used too much !)</li>
425<li>add journal &quot;Nature Geosciences&quot;</li>
426<li>add journal &quot;International Journal of Climatology&quot;</li>
427<li>add journal &quot;Journal of Hydrology&quot;</li>
428<li>add journal &quot;Revue de l'Énergie&quot;</li>
429<li>add journal &quot;Clim. Res.&quot;</li>
430<li>add journal &quot;Hydrol. Earth Sys. Sci.&quot;</li>
431<li>add journal &quot;Ambio&quot;</li>
432<li>add journal &quot;Theoretical and applied climatology&quot;</li>
433<li>add journal &quot;Remote Sensing of Environnement&quot;</li>
434</ul>
435</li>
436<li>fplod 2008-10-28T11:40:19Z aedon.locean-ipsl.upmc.fr (Darwin)<ul>
437<li>add journal &quot;Progress In Oceanography&quot;</li>
438<li>add journal &quot;Climatic Change&quot;</li>
439<li>add journal &quot;Ocean Dynamics&quot;</li>
440<li>add journal &quot;Phil. Trans. Roy. Soc. A&quot;</li>
441<li>add journal &quot;Izvestiya Atmospheric and Oceanic Physics&quot;</li>
442<li>add journal &quot;Journal of Hydrometeorology&quot;</li>
443<li>add journal &quot;Remote Sensing of Environment&quot;</li>
444<li>add journal &quot;Oceanology&quot;</li>
445<li>add journal &quot;Water Resour. Res.&quot;</li>
446<li>add journal &quot;Advances in Atmospheric Sciences&quot;</li>
447<li>add journal &quot;Quaternary Science Reviews&quot;</li>
448<li>replace &quot;Elsevier Oceanography Series&quot; by &quot;Elsevier Oceanographic Series&quot;</li>
449<li>bug fix : unclosed date tag</li>
450<li>trouble with flat conversion for id building ...</li>
451<li>remove interactivity at then end (allowing redirection of stderr and
452stdout)</li>
453<li>strip blank lines</li>
454<li>bug fix : counting nb of occurences of &quot;,&quot; technique ... to be improved</li>
455</ul>
456</li>
457<li>fplod 2008-09-16T15:19:59Z aedon.locean-ipsl.upmc.fr (Darwin)<ul>
458<li>comments in ReStructured Text</li>
459</ul>
460</li>
461<li>fplod 2008-05-16T10:33:16Z aedon.locean-ipsl.upmc.fr (Darwin)<ul>
462<li>add parameter -o for firstname/surname order in bibtex file</li>
463</ul>
464</li>
465<li>fplod 2008-05-15T15:15:04Z aedon.locean-ipsl.upmc.fr (Darwin)<ul>
466<li>new way of processing bibtex file : external/bibtex2xml.py</li>
467</ul>
468</li>
469<li>fplod 2008-04-30T07:11:58Z aedon.locean-ipsl.upmc.fr (Darwin)<ul>
470<li>chgt for dbk5 out</li>
471<li>xmlto 0.0.18 does'nt like this docbook release. remove</li>
472<li>usage of xml (xmlstarlet) for validation</li>
473<li>bug fix</li>
474<li>add journal names from demo1</li>
475<li>fplod 2008-03-12T16:11:07Z aedon.locean-ipsl.upmc.fr (Darwin)</li>
476<li>add -p option (to overide bibrefnemo in file name and id)</li>
477<li>add -l option by default en</li>
478</ul>
479</li>
480<li>fplod 2008-03-11T11:25:27Z aedon.locean-ipsl.upmc.fr (Darwin)<ul>
481<li>add bibtex entry (not finished)++</li>
482</ul>
483</li>
484<li>fplod 2007-06-20T17:18:02Z aedon.locean-ipsl.upmc.fr (Darwin)<ul>
485<li>&lt;bibliomisc role=&quot;id&quot;&gt; replace by &lt;biblioid class=&quot;doi&quot;&gt;</li>
486</ul>
487</li>
488<li>smasson 2007-06-07T16:43:42Z arete.locean-ipsl.upmc.fr (Darwin)<ul>
489<li>Add journals</li>
490</ul>
491</li>
492<li>fplod 2007-05-10T09:17:09Z aedon.locean-ipsl.upmc.fr (Darwin)<ul>
493<li>derniÚres touches</li>
494</ul>
495</li>
496<li>fplod 2007-04-25T10:59:49Z cerbere.locean-ipsl.upmc.fr (Linux)<ul>
497<li>add a filein parameter and an option for mailbody</li>
498<li>comments (line begininig with #) are now possible</li>
499</ul>
500</li>
501<li>Sebastien Masson avril 2007<ul>
502<li>creation</li>
503</ul>
504</li>
505</ul>
506</div>
507</div>
508</body>
509</html>
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