Changes between Version 32 and Version 33 of Doc/Setup

Timestamp:

10/01/15 15:48:36 (9 years ago)

Author:

sdipsl

Comment:

--

Doc/Setup

@@ -42 +42 @@
 ls 
   AA_Make Makefile EXPERIMENTS GENERAL config.card
-vi config.card    # Change JobName=DIADEME
+vi config.card      # Change JobName=DIADEME
+                    # Change [Executable] section to specify your executionType. see config.card description 
 ../../util/ins_job  # Check and complet job's header
 ls 
   AA_Make Makefile EXPERIMENTS GENERAL DIADEME
 }}}
-The ''config.card'' file is deleted and a directory called DIADEME is created. 
+A directory called ''DIADEME'' is created and the ''config.card'' file is moved in. 
 
 
@@ -77 +78 @@
  * !DateEnd --> simulation end date. It must be the last day "included" in your simulation
  * !PeriodLength --> frequency of the executable run. This parameter can be 1M, 1Y or 10Y
- * !JobNumProcTot --> number of processors required by your simulation. This parameter depends on the configurations and on the resolutions. For example, a configuration containing LMDZ in 96x95 can use 32 processors at the most.
+ * !JobNumProcTot --> number of processors required by your simulation. 
  * ARCHIVE --> optional : path to base directory for output files. By default this is set in libIGCM depending on the machine.
 
@@ -83 +84 @@
 [[BR]] [[BR]]
 
-Example 1: The output directory for the following case will be IGCM_OUT/LMDZOR/TEST/REINE/DIADEME
+'''Example 1: The output directory for the following case will be IGCM_OUT/LMDZOR/TEST/REINE/DIADEME''' 
 {{{
 #!sh 
@@ -105 +106 @@
 [[NoteBox(warn,The character "_" is not allowed in the variables !JobName\, !ExperimentName and !SpaceName, 600px)]]
 
-[[NoteBox(note,if !SpaceName=TEST all output will be store on scratchdir (on curie) or workdir (on ada), 600px)]]
-#### !PeriodLength ####
-The parameter !PeriodLength allows you to determine the continuous length of a simulation period for your configuration, i.e. the frequency at which restart files are created. '''The maximum !PeriodLength for any LMDZ model is 1M'''. 
-
+[[NoteBox(note,!PeriodLength allows you to determine the integration length of an execution for your configuration (restart files creation frequency), 600px)]] 
+
+[[NoteBox(warn,When using LMDz in your configuration the maximum possible !PeriodLength is 1M, 600px)]] 
+
+[[NoteBox(note,If !SpaceName=TEST all output will be store on scratchdir (on curie) or workdir (on ada), 600px)]] 
+
+### The section [Executable] ### 
+This section contains one line for each model component giving the executable's name in the bin/ directory and the executable's name copied to the working directory. You should only change this section if your executable is running in parallel using MPI and OpenMP or if you have changed the executable's name. 
+
+Note : (",") indicates that this component has no executable. It is defined in a library linked to another executable (e.g. Orchidee in LMDZOR or Inca in LMDZINCA).  
+
+'''Example of an old syntax (configuration < v5). LMDz will use !JobNumProcTot MPI processes. Using IPSLCM5_v5, NEMO will use 5 MPI processes and LMDz will use (!JobNumProcTot-5) MPI processes''' 
+{{{ 
+#!sh 
+[Executable]
+#D- For each component, Real name of executable, Name of executable for oasis, optional : number of MPI task, number of OpenMP thread. 
+ATM= (gcm.e, lmdz.x) 
+SRF= ("", "") 
+... 
+}}} 
+
+'''Example for an MPMD MPI execution with NEMO and XIOS''' : Ocean on 127 MPI processes and IO Server on 1 MPI processes. 
+{{{ 
+#!sh 
+[Executable] 
+#D- For each component, Real name of executable, Name of executable in RUN_DIR directory, Number of MPI processes, Number of OpenMP threads 
+OCE= (opa, opa.xx, 127MPI) 
+ICE= ("" ,"" ) 
+MBG= ("" ,"" ) 
+IOS= (xios_server.exe, xios.x, 1MPI) 
+}}} 
+
+'''Example for an MPMD hybrid MPI/OpenMP execution with IPSLCM coupled configuration''' : Atmosphere on 27 MPI processes and 4 OMP threads per processes, Ocean on 19 MPI processes, IO Server on 1 MPI processes. 
+{{{ 
+#!sh 
+[Executable] 
+#D- For each component, Real name of executable, Name of executable in RUN_DIR directory, Number of MPI processes, Number of OpenMP threads 
+ATM= (gcm.e, lmdz.x, 27MPI, 4OMP) 
+SRF= ("" ,"" ) 
+SBG= ("" ,"" ) 
+OCE= (opa, opa.xx, 19MPI) 
+ICE= ("" ,"" ) 
+MBG= ("" ,"" ) 
+CPL= ("", "" ) 
+IOS= (xios_server.exe, xios.x, 1MPI) 
+}}} 
+
+'''Another example for an MPMD hybrid MPI/OpenMP execution with LMDZ and XIOS''' : Atmosphere on 47 MPI processes, 8 OMP threads per processes and and IO server on 1 MPI processes. 
+{{{ 
+#!sh 
+[Executable] 
+#D- For each component, Real name of executable, Name of executable in RUN_DIR directory, Number of MPI processes, Number of OpenMP threads 
+ATM= (gcm.e, lmdz.x, 47MPI, 8OMP) 
+SRF= ("" ,"" ) 
+SBG= ("" ,"" ) 
+IOS= (xios_server.exe, xios.x, 1MPI) 
+}}} 
+
+'''Example for an SPMD hybrid MPI/OpenMP simulation with LMDZ''' : Atmosphere on 32 MPI processes and 4 OMP threads per processes. 
+{{{ 
+#!sh 
+[Executable] 
+#D- For each component, Real name of executable, Name of executable in RUN_DIR directory, Number of MPI processes, Number of OpenMP threads 
+ATM= (gcm.e, lmdz.x, 32MPI, 4OMP) 
+SRF= ("" ,"" ) 
+SBG= ("" ,"" ) 
+}}} 
 
 ### The [Restarts] section ###
@@ -184 +248 @@
 
  * '''INCA''' : the section !WriteFrequency does not work. Click [wiki:DocImodelDinca here] to learn more about how to change the writing frequency.
-
-### The section [Executable] ###
-This section contains one line for each model component giving the executable's name in the bin/ directory and the executable's name copied to the working directory. You should only change this section if your executable is running in parallel using MPI and OpenMP or if you have changed the executable's name.
-{{{
-#!sh
-[Executable]
-#D- For each component, Real name of executable, Name of executable for oasis, optional : number of MPI task, number of OpenMP thread.
-ATM= (gcm.e, lmdz.x)
-SRF= ("", "")
-...
-}}}
-Note : (",") indicates that this component has no executable. It is defined in a library linked to another executable (e.g. Orchidee in LMDZOR or Inca in LMDZINCA). 
-
-'''Example for an hybrid MPI/OpenMP simulation with LMDZ''' : Atmosphere on 32 MPI process and 4 OMP threads per process.
-{{{
-#!sh
-[Executable]
-#D- For each component, Real name of executable, Name of executable in RUN_DIR directory, Number of MPI process, Number of OpenMP threads
-ATM= (gcm.e, lmdz.x, 32MPI, 4OMP)
-SRF= ("" ,"" )
-SBG= ("" ,"" )
-}}}
-
-'''Example for coupled configuration on curie''' : Atmosphere on 27 MPI process and 4 OMP threads per process, Ocean on 19 MPI process, IO Server on 1 MPI process.
-{{{
-#!sh
-[Executable]
-#D- For each component, Real name of executable, Name of executable in RUN_DIR directory, Number of MPI process, Number of OpenMP threads
-ATM= (gcm.e, lmdz.x, 27MPI, 4OMP)
-SRF= ("" ,"" )
-SBG= ("" ,"" )
-OCE= (opa, opa.xx, 19MPI)
-ICE= ("" ,"" )
-MBG= ("" ,"" )
-CPL= ("", "" )
-IOS= (xios_server.exe, xios.x, 1MPI)
-}}}
 
 ### The [Post] section ###