[219] | 1 | #include "nc4_data_output.hpp" |
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| 2 | |
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| 3 | #include <boost/lexical_cast.hpp> |
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[352] | 4 | #include "attribute_template.hpp" |
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| 5 | #include "group_template.hpp" |
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[219] | 6 | |
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| 7 | #include "file.hpp" |
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| 8 | #include "calendar.hpp" |
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[278] | 9 | #include "context.hpp" |
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[300] | 10 | #include "context_server.hpp" |
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[498] | 11 | #include "netCdfException.hpp" |
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| 12 | #include "exception.hpp" |
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[219] | 13 | |
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[335] | 14 | namespace xios |
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[219] | 15 | { |
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[878] | 16 | /// ////////////////////// Dfinitions ////////////////////// /// |
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[219] | 17 | CNc4DataOutput::CNc4DataOutput |
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| 18 | (const StdString & filename, bool exist) |
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| 19 | : SuperClass() |
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| 20 | , SuperClassWriter(filename, exist) |
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| 21 | , filename(filename) |
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| 22 | { |
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[879] | 23 | SuperClass::type = MULTI_FILE; |
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[219] | 24 | } |
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| 25 | |
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| 26 | CNc4DataOutput::CNc4DataOutput |
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[878] | 27 | (const StdString & filename, bool exist, bool useClassicFormat, bool useCFConvention, |
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[924] | 28 | MPI_Comm comm_file, bool multifile, bool isCollective, const StdString& timeCounterName) |
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[219] | 29 | : SuperClass() |
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[878] | 30 | , SuperClassWriter(filename, exist, useClassicFormat, useCFConvention, &comm_file, multifile, timeCounterName) |
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[379] | 31 | , comm_file(comm_file) |
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[219] | 32 | , filename(filename) |
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[335] | 33 | , isCollective(isCollective) |
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[219] | 34 | { |
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[879] | 35 | SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE; |
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[219] | 36 | } |
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| 37 | |
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| 38 | CNc4DataOutput::~CNc4DataOutput(void) |
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[879] | 39 | { /* Ne rien faire de plus */ } |
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[219] | 40 | |
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| 41 | ///-------------------------------------------------------------- |
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| 42 | |
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| 43 | const StdString & CNc4DataOutput::getFileName(void) const |
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| 44 | { |
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| 45 | return (this->filename); |
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| 46 | } |
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| 47 | |
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| 48 | //--------------------------------------------------------------- |
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| 49 | |
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[347] | 50 | void CNc4DataOutput::writeDomain_(CDomain* domain) |
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[219] | 51 | { |
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[1129] | 52 | domain->computeWrittenIndex(); |
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[881] | 53 | if (domain->type == CDomain::type_attr::unstructured) |
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| 54 | { |
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| 55 | if (SuperClassWriter::useCFConvention) |
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| 56 | writeUnstructuredDomain(domain) ; |
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| 57 | else |
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| 58 | writeUnstructuredDomainUgrid(domain) ; |
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| 59 | return ; |
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| 60 | } |
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[488] | 61 | |
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[1129] | 62 | |
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[347] | 63 | CContext* context = CContext::getCurrent() ; |
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[300] | 64 | CContextServer* server=context->server ; |
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[488] | 65 | |
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[219] | 66 | if (domain->IsWritten(this->filename)) return; |
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| 67 | domain->checkAttributes(); |
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[488] | 68 | |
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| 69 | if (domain->isEmpty()) |
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[881] | 70 | if (SuperClass::type==MULTI_FILE) return; |
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[219] | 71 | |
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| 72 | std::vector<StdString> dim0, dim1; |
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[772] | 73 | StdString domid = domain->getDomainOutputName(); |
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[318] | 74 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
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[706] | 75 | if (isWrittenDomain(domid)) return ; |
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[774] | 76 | else setWrittenDomain(domid); |
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[449] | 77 | |
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[1099] | 78 | // const std::vector<int>& local_size_write = domain->getLocalWriteSize(); |
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| 79 | // const std::vector<int>& global_size_write = domain->getGlobalWriteSize(); |
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| 80 | // const std::vector<int>& start_write = domain->getStartWriteIndex(); |
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| 81 | // const std::vector<int>& count_write = domain->getCountWriteIndex(); |
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[1025] | 82 | int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex; |
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[449] | 83 | |
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| 84 | StdString dimXid, dimYid ; |
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[488] | 85 | |
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[664] | 86 | bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear); |
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[449] | 87 | switch (domain->type) |
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[433] | 88 | { |
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[449] | 89 | case CDomain::type_attr::curvilinear : |
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| 90 | dimXid = StdString("x").append(appendDomid); |
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| 91 | dimYid = StdString("y").append(appendDomid); |
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| 92 | break ; |
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[664] | 93 | case CDomain::type_attr::rectilinear : |
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[449] | 94 | dimXid = StdString("lon").append(appendDomid); |
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| 95 | dimYid = StdString("lat").append(appendDomid); |
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| 96 | break; |
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[488] | 97 | } |
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| 98 | |
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[617] | 99 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
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| 100 | |
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[449] | 101 | string lonid,latid,bounds_lonid,bounds_latid ; |
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[611] | 102 | string areaId = "area" + appendDomid; |
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[391] | 103 | /* |
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[300] | 104 | StdString lonid_loc = (server->intraCommSize > 1) |
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[318] | 105 | ? StdString("lon").append(appendDomid).append("_local") |
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[278] | 106 | : lonid; |
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[300] | 107 | StdString latid_loc = (server->intraCommSize > 1) |
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[318] | 108 | ? StdString("lat").append(appendDomid).append("_local") |
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[278] | 109 | : latid; |
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[391] | 110 | */ |
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[219] | 111 | |
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[1129] | 112 | CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer; |
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| 113 | int nbWritten = indexToWrite.numElements(); |
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| 114 | CArray<double,1> writtenLat, writtenLon; |
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| 115 | CArray<double,2> writtenBndsLat, writtenBndsLon; |
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| 116 | CArray<double,1> writtenArea; |
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| 117 | |
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| 118 | if (domain->hasLonLat) |
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| 119 | { |
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| 120 | writtenLat.resize(nbWritten); |
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| 121 | writtenLon.resize(nbWritten); |
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| 122 | for (int idx = 0; idx < nbWritten; ++idx) |
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| 123 | { |
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| 124 | writtenLat(idx) = domain->latvalue(indexToWrite(idx)); |
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| 125 | writtenLon(idx) = domain->lonvalue(indexToWrite(idx)); |
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| 126 | } |
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| 127 | |
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| 128 | |
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| 129 | if (domain->hasBounds) |
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| 130 | { |
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| 131 | int nvertex = domain->nvertex, idx; |
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| 132 | writtenBndsLat.resize(nvertex, nbWritten); |
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| 133 | writtenBndsLon.resize(nvertex, nbWritten); |
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| 134 | CArray<double,2>& boundslat = domain->bounds_latvalue; |
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| 135 | CArray<double,2>& boundslon = domain->bounds_lonvalue; |
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| 136 | for (idx = 0; idx < nbWritten; ++idx) |
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| 137 | for (int nv = 0; nv < nvertex; ++nv) |
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| 138 | { |
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| 139 | writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx))); |
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| 140 | writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx))); |
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| 141 | } |
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| 142 | } |
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| 143 | } |
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| 144 | |
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| 145 | if (domain->hasArea) |
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| 146 | { |
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| 147 | writtenArea.resize(nbWritten); |
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| 148 | for (int idx = 0; idx < nbWritten; ++idx) |
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| 149 | { |
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| 150 | writtenArea(idx) = domain->areavalue(indexToWrite(idx)); |
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| 151 | } |
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| 152 | } |
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| 153 | |
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[498] | 154 | try |
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[219] | 155 | { |
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[498] | 156 | switch (SuperClass::type) |
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| 157 | { |
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| 158 | case (MULTI_FILE) : |
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| 159 | { |
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| 160 | // if (domain->isEmpty()) return; |
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[488] | 161 | |
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[498] | 162 | if (server->intraCommSize > 1) |
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| 163 | { |
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| 164 | // SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue()); |
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| 165 | // SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue()); |
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| 166 | } |
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[286] | 167 | |
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[498] | 168 | switch (domain->type) |
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| 169 | { |
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| 170 | case CDomain::type_attr::curvilinear : |
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| 171 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 172 | lonid = StdString("nav_lon").append(appendDomid); |
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| 173 | latid = StdString("nav_lat").append(appendDomid); |
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| 174 | break ; |
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[664] | 175 | case CDomain::type_attr::rectilinear : |
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[498] | 176 | lonid = StdString("lon").append(appendDomid); |
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| 177 | latid = StdString("lat").append(appendDomid); |
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| 178 | dim0.push_back(dimYid); |
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| 179 | dim1.push_back(dimXid); |
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| 180 | break; |
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| 181 | } |
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[488] | 182 | |
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[617] | 183 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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| 184 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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| 185 | |
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[1099] | 186 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni); |
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| 187 | SuperClassWriter::addDimension(dimYid, domain->zoom_nj); |
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[488] | 188 | |
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[617] | 189 | if (domain->hasBounds) |
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| 190 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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| 191 | |
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[498] | 192 | if (server->intraCommSize > 1) |
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| 193 | { |
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[1099] | 194 | this->writeLocalAttributes(domain->zoom_ibegin, |
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| 195 | domain->zoom_ni, |
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| 196 | domain->zoom_jbegin, |
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| 197 | domain->zoom_nj, |
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[616] | 198 | appendDomid); |
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[488] | 199 | |
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[628] | 200 | if (singleDomain) |
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| 201 | this->writeLocalAttributes_IOIPSL(dimXid, dimYid, |
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[1099] | 202 | domain->zoom_ibegin, |
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| 203 | domain->zoom_ni, |
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| 204 | domain->zoom_jbegin, |
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| 205 | domain->zoom_nj, |
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[628] | 206 | domain->ni_glo,domain->nj_glo, |
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| 207 | server->intraCommRank,server->intraCommSize); |
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[449] | 208 | } |
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[488] | 209 | |
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[665] | 210 | if (domain->hasLonLat) |
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[498] | 211 | { |
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[665] | 212 | switch (domain->type) |
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| 213 | { |
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| 214 | case CDomain::type_attr::curvilinear : |
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| 215 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 216 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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| 217 | break ; |
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| 218 | case CDomain::type_attr::rectilinear : |
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| 219 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 220 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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| 221 | break ; |
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| 222 | } |
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[488] | 223 | |
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[665] | 224 | this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
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| 225 | this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
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[219] | 226 | |
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[665] | 227 | if (domain->hasBounds) |
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| 228 | { |
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| 229 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
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| 230 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
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[617] | 231 | |
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[665] | 232 | dim0.clear(); |
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| 233 | dim0.push_back(dimYid); |
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| 234 | dim0.push_back(dimXid); |
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| 235 | dim0.push_back(dimVertId); |
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| 236 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
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| 237 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
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| 238 | } |
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[617] | 239 | } |
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| 240 | |
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[498] | 241 | dim0.clear(); |
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[616] | 242 | dim0.push_back(dimYid); |
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[498] | 243 | dim0.push_back(dimXid); |
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[219] | 244 | |
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| 245 | |
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[498] | 246 | // supress mask if (server->intraCommSize > 1) |
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| 247 | // supress mask { |
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| 248 | // supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0); |
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| 249 | // supress mask |
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| 250 | // supress mask this->writeMaskAttributes(maskid, |
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| 251 | // supress mask domain->data_dim.getValue()/*, |
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| 252 | // supress mask domain->data_ni.getValue(), |
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| 253 | // supress mask domain->data_nj.getValue(), |
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| 254 | // supress mask domain->data_ibegin.getValue(), |
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| 255 | // supress mask domain->data_jbegin.getValue()*/); |
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| 256 | // supress mask } |
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[488] | 257 | |
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[498] | 258 | //SuperClassWriter::setDefaultValue(maskid, &dvm); |
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[219] | 259 | |
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[611] | 260 | if (domain->hasArea) |
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| 261 | { |
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| 262 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
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[614] | 263 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
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[611] | 264 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
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| 265 | } |
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| 266 | |
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[498] | 267 | SuperClassWriter::definition_end(); |
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[449] | 268 | |
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[665] | 269 | if (domain->hasLonLat) |
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[498] | 270 | { |
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[1129] | 271 | // CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer; |
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| 272 | // int nbWritten = indexToWrite.numElements(); |
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| 273 | // CArray<double,1> writtenLat(nbWritten), writtenLon(nbWritten); |
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| 274 | // for (int idx = 0; idx < nbWritten; ++idx) |
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| 275 | // { |
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| 276 | // writtenLat(idx) = domain->latvalue(indexToWrite(idx)); |
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| 277 | // writtenLon(idx) = domain->lonvalue(indexToWrite(idx)); |
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| 278 | // } |
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[665] | 279 | switch (domain->type) |
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| 280 | { |
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[1129] | 281 | case CDomain::type_attr::curvilinear : |
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| 282 | |
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| 283 | // SuperClassWriter::writeData(domain->latvalue, latid, isCollective, 0); |
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| 284 | // SuperClassWriter::writeData(domain->lonvalue, lonid, isCollective, 0); |
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| 285 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0); |
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| 286 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0); |
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[665] | 287 | break; |
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| 288 | case CDomain::type_attr::rectilinear : |
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[1129] | 289 | // CArray<double,1> lat = domain->latvalue(Range(fromStart,toEnd,domain->zoom_ni)) ; |
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| 290 | // SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0); |
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| 291 | // CArray<double,1> lon = domain->lonvalue(Range(0,domain->zoom_ni-1)) ; |
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| 292 | // // CArray<double,1> lon = domain->lonvalue(Range(0,local_size_write[1]-1)) ; |
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| 293 | // SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0); |
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| 294 | |
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| 295 | CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->zoom_ni)) ; |
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[665] | 296 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0); |
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[1129] | 297 | CArray<double,1> lon = writtenLon(Range(0,domain->zoom_ni-1)) ; |
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[1054] | 298 | // CArray<double,1> lon = domain->lonvalue(Range(0,local_size_write[1]-1)) ; |
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[665] | 299 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0); |
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| 300 | break; |
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| 301 | } |
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[611] | 302 | |
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[665] | 303 | if (domain->hasBounds) |
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| 304 | { |
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[1129] | 305 | // CArray<double,2> writtenBndsLat(nbWritten,2), writtenBndsLon(nbWritten,2); |
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| 306 | // for (int idx = 0; idx < nbWritten; ++idx) |
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| 307 | // for (int nv = 0; nv < domain->nvertex; ++nv) |
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| 308 | // { |
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| 309 | // writtenBndsLat(idx) = domain->bounds_latvalue(nv, indexToWrite(idx)); |
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| 310 | // writtenBndsLon(idx) = domain->bounds_lonvalue(nv, indexToWrite(idx)); |
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| 311 | // } |
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| 312 | |
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| 313 | // SuperClassWriter::writeData(domain->bounds_lonvalue, bounds_lonid, isCollective, 0); |
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| 314 | // SuperClassWriter::writeData(domain->bounds_latvalue, bounds_latid, isCollective, 0); |
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| 315 | SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0); |
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| 316 | SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0); |
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[665] | 317 | } |
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[617] | 318 | } |
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| 319 | |
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[611] | 320 | if (domain->hasArea) |
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[1129] | 321 | { |
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| 322 | // CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer; |
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| 323 | // int nbWritten = indexToWrite.numElements(); |
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| 324 | // CArray<double,1> writtenArea(nbWritten); |
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| 325 | // for (int idx = 0; idx < nbWritten; ++idx) |
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| 326 | // { |
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| 327 | // writtenArea(idx) = domain->areavalue(indexToWrite(idx)); |
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| 328 | // } |
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[611] | 329 | |
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[1129] | 330 | SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0); |
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| 331 | // SuperClassWriter::writeData(domain->areavalue, areaId, isCollective, 0); |
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| 332 | } |
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| 333 | |
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[498] | 334 | SuperClassWriter::definition_start(); |
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[219] | 335 | |
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[498] | 336 | break; |
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| 337 | } |
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| 338 | case (ONE_FILE) : |
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| 339 | { |
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[1099] | 340 | SuperClassWriter::addDimension(dimXid, domain->global_zoom_ni); |
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| 341 | SuperClassWriter::addDimension(dimYid, domain->global_zoom_nj); |
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[286] | 342 | |
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[617] | 343 | if (domain->hasBounds) |
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| 344 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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| 345 | |
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[665] | 346 | if (domain->hasLonLat) |
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[498] | 347 | { |
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[665] | 348 | switch (domain->type) |
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| 349 | { |
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| 350 | case CDomain::type_attr::curvilinear : |
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| 351 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 352 | lonid = StdString("nav_lon").append(appendDomid); |
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| 353 | latid = StdString("nav_lat").append(appendDomid); |
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| 354 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 355 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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| 356 | break; |
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[449] | 357 | |
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[665] | 358 | case CDomain::type_attr::rectilinear : |
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| 359 | dim0.push_back(dimYid); |
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| 360 | dim1.push_back(dimXid); |
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| 361 | lonid = StdString("lon").append(appendDomid); |
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| 362 | latid = StdString("lat").append(appendDomid); |
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| 363 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 364 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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| 365 | break; |
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| 366 | } |
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| 367 | |
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| 368 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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| 369 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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| 370 | |
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| 371 | this->writeAxisAttributes |
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| 372 | (lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
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| 373 | this->writeAxisAttributes |
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| 374 | (latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
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| 375 | |
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| 376 | if (domain->hasBounds) |
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| 377 | { |
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| 378 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
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| 379 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
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| 380 | |
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| 381 | dim0.clear(); |
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[498] | 382 | dim0.push_back(dimYid); |
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[665] | 383 | dim0.push_back(dimXid); |
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| 384 | dim0.push_back(dimVertId); |
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| 385 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
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| 386 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
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| 387 | } |
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[498] | 388 | } |
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[611] | 389 | |
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| 390 | if (domain->hasArea) |
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| 391 | { |
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| 392 | dim0.clear(); |
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| 393 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 394 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
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[614] | 395 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
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[611] | 396 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
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| 397 | dim0.clear(); |
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| 398 | } |
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| 399 | |
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| 400 | SuperClassWriter::definition_end(); |
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[286] | 401 | |
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[498] | 402 | switch (domain->type) |
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[384] | 403 | { |
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[498] | 404 | case CDomain::type_attr::curvilinear : |
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[449] | 405 | { |
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[498] | 406 | std::vector<StdSize> start(2) ; |
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| 407 | std::vector<StdSize> count(2) ; |
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| 408 | if (domain->isEmpty()) |
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| 409 | { |
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[611] | 410 | start[0]=0 ; start[1]=0 ; |
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[498] | 411 | count[0]=0 ; count[1]=0 ; |
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| 412 | } |
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| 413 | else |
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| 414 | { |
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[1099] | 415 | start[1]=domain->zoom_ibegin-domain->global_zoom_ibegin; |
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| 416 | start[0]=domain->zoom_jbegin-domain->global_zoom_jbegin; |
---|
| 417 | count[1]=domain->zoom_ni ; count[0]=domain->zoom_nj ; |
---|
[498] | 418 | } |
---|
[488] | 419 | |
---|
[665] | 420 | if (domain->hasLonLat) |
---|
| 421 | { |
---|
[1129] | 422 | // SuperClassWriter::writeData(domain->latvalue, latid, isCollective, 0,&start,&count); |
---|
| 423 | // SuperClassWriter::writeData(domain->lonvalue, lonid, isCollective, 0,&start,&count); |
---|
| 424 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count); |
---|
| 425 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count); |
---|
[665] | 426 | } |
---|
[498] | 427 | break; |
---|
| 428 | } |
---|
[664] | 429 | case CDomain::type_attr::rectilinear : |
---|
[449] | 430 | { |
---|
[665] | 431 | if (domain->hasLonLat) |
---|
[498] | 432 | { |
---|
[665] | 433 | std::vector<StdSize> start(1) ; |
---|
| 434 | std::vector<StdSize> count(1) ; |
---|
| 435 | if (domain->isEmpty()) |
---|
| 436 | { |
---|
| 437 | start[0]=0 ; |
---|
| 438 | count[0]=0 ; |
---|
[1129] | 439 | // SuperClassWriter::writeData(domain->latvalue, latid, isCollective, 0,&start,&count); |
---|
| 440 | // SuperClassWriter::writeData(domain->lonvalue, lonid, isCollective, 0,&start,&count); |
---|
[449] | 441 | |
---|
[1129] | 442 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count); |
---|
| 443 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count); |
---|
[665] | 444 | } |
---|
| 445 | else |
---|
[1129] | 446 | { |
---|
[1099] | 447 | start[0]=domain->zoom_jbegin-domain->global_zoom_jbegin; |
---|
| 448 | count[0]=domain->zoom_nj; |
---|
[1129] | 449 | // CArray<double,1> lat = domain->latvalue(Range(fromStart,toEnd,domain->zoom_ni)); |
---|
| 450 | CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->zoom_ni)); |
---|
[665] | 451 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count); |
---|
| 452 | |
---|
[1099] | 453 | start[0]=domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 454 | count[0]=domain->zoom_ni; |
---|
[1129] | 455 | // CArray<double,1> lon=domain->lonvalue(Range(0,domain->zoom_ni-1)); |
---|
| 456 | CArray<double,1> lon = writtenLon(Range(0,domain->zoom_ni-1)); |
---|
[665] | 457 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count); |
---|
| 458 | } |
---|
[498] | 459 | } |
---|
| 460 | break; |
---|
[449] | 461 | } |
---|
[384] | 462 | } |
---|
[611] | 463 | |
---|
[617] | 464 | if (domain->hasBounds) |
---|
| 465 | { |
---|
| 466 | std::vector<StdSize> start(3); |
---|
| 467 | std::vector<StdSize> count(3); |
---|
| 468 | if (domain->isEmpty()) |
---|
| 469 | { |
---|
| 470 | start[2] = start[1] = start[0] = 0; |
---|
| 471 | count[2] = count[1] = count[0] = 0; |
---|
| 472 | } |
---|
| 473 | else |
---|
| 474 | { |
---|
| 475 | start[2] = 0; |
---|
[1099] | 476 | start[1] = domain->zoom_ibegin - domain->global_zoom_ibegin; |
---|
| 477 | start[0] = domain->zoom_jbegin - domain->global_zoom_jbegin; |
---|
| 478 | count[2] = domain->nvertex; |
---|
| 479 | count[1] = domain->zoom_ni; |
---|
| 480 | count[0] = domain->zoom_nj; |
---|
[617] | 481 | } |
---|
[625] | 482 | |
---|
[1129] | 483 | // SuperClassWriter::writeData(domain->bounds_lonvalue, bounds_lonid, isCollective, 0, &start, &count); |
---|
| 484 | // SuperClassWriter::writeData(domain->bounds_latvalue, bounds_latid, isCollective, 0, &start, &count); |
---|
| 485 | SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0, &start, &count); |
---|
| 486 | SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0, &start, &count); |
---|
[617] | 487 | } |
---|
| 488 | |
---|
[611] | 489 | if (domain->hasArea) |
---|
| 490 | { |
---|
| 491 | std::vector<StdSize> start(2); |
---|
| 492 | std::vector<StdSize> count(2); |
---|
| 493 | |
---|
| 494 | if (domain->isEmpty()) |
---|
| 495 | { |
---|
| 496 | start[0] = 0; start[1] = 0; |
---|
| 497 | count[0] = 0; count[1] = 0; |
---|
| 498 | } |
---|
| 499 | else |
---|
| 500 | { |
---|
[1099] | 501 | start[1] = domain->zoom_ibegin - domain->global_zoom_ibegin; |
---|
| 502 | start[0] = domain->zoom_jbegin - domain->global_zoom_jbegin; |
---|
| 503 | count[1] = domain->zoom_ni; |
---|
| 504 | count[0] = domain->zoom_nj; |
---|
[611] | 505 | } |
---|
| 506 | |
---|
[1129] | 507 | // SuperClassWriter::writeData(domain->areavalue, areaId, isCollective, 0, &start, &count); |
---|
| 508 | SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count); |
---|
[611] | 509 | } |
---|
| 510 | |
---|
[498] | 511 | SuperClassWriter::definition_start(); |
---|
| 512 | break; |
---|
| 513 | } |
---|
| 514 | default : |
---|
| 515 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 516 | << "[ type = " << SuperClass::type << "]" |
---|
| 517 | << " not implemented yet !"); |
---|
| 518 | } |
---|
[449] | 519 | } |
---|
[498] | 520 | catch (CNetCdfException& e) |
---|
| 521 | { |
---|
| 522 | StdString msg("On writing the domain : "); |
---|
| 523 | msg.append(domid); msg.append("\n"); |
---|
| 524 | msg.append("In the context : "); |
---|
| 525 | msg.append(context->getId()); msg.append("\n"); |
---|
| 526 | msg.append(e.what()); |
---|
| 527 | ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg); |
---|
| 528 | } |
---|
| 529 | |
---|
[449] | 530 | domain->addRelFile(this->filename); |
---|
| 531 | } |
---|
| 532 | |
---|
[879] | 533 | //-------------------------------------------------------------- |
---|
[878] | 534 | |
---|
[879] | 535 | void CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain) |
---|
| 536 | { |
---|
| 537 | CContext* context = CContext::getCurrent() ; |
---|
| 538 | CContextServer* server=context->server ; |
---|
[878] | 539 | |
---|
[879] | 540 | if (domain->IsWritten(this->filename)) return; |
---|
| 541 | domain->checkAttributes(); |
---|
| 542 | if (domain->isEmpty()) |
---|
| 543 | if (SuperClass::type==MULTI_FILE) return ; |
---|
[878] | 544 | |
---|
[879] | 545 | std::vector<StdString> dim0; |
---|
| 546 | StdString domid = domain->getDomainOutputName(); |
---|
| 547 | StdString domainName = domain->name; |
---|
[924] | 548 | domain->assignMesh(domainName, domain->nvertex); |
---|
[1025] | 549 | domain->mesh->createMeshEpsilon(server->intraComm, domain->lonvalue, domain->latvalue, domain->bounds_lonvalue, domain->bounds_latvalue); |
---|
[878] | 550 | |
---|
[879] | 551 | StdString node_x = domainName + "_node_x"; |
---|
| 552 | StdString node_y = domainName + "_node_y"; |
---|
[878] | 553 | |
---|
[879] | 554 | StdString edge_x = domainName + "_edge_x"; |
---|
| 555 | StdString edge_y = domainName + "_edge_y"; |
---|
| 556 | StdString edge_nodes = domainName + "_edge_nodes"; |
---|
[878] | 557 | |
---|
[879] | 558 | StdString face_x = domainName + "_face_x"; |
---|
| 559 | StdString face_y = domainName + "_face_y"; |
---|
| 560 | StdString face_nodes = domainName + "_face_nodes"; |
---|
[902] | 561 | StdString face_edges = domainName + "_face_edges"; |
---|
| 562 | StdString edge_faces = domainName + "_edge_face_links"; |
---|
| 563 | StdString face_faces = domainName + "_face_links"; |
---|
[878] | 564 | |
---|
[879] | 565 | StdString dimNode = "n" + domainName + "_node"; |
---|
| 566 | StdString dimEdge = "n" + domainName + "_edge"; |
---|
| 567 | StdString dimFace = "n" + domainName + "_face"; |
---|
| 568 | StdString dimVertex = "n" + domainName + "_vertex"; |
---|
| 569 | StdString dimTwo = "Two"; |
---|
[878] | 570 | |
---|
[1025] | 571 | const std::vector<int>& local_size_write = domain->getLocalWriteSize(); |
---|
| 572 | const std::vector<int>& global_size_write = domain->getGlobalWriteSize(); |
---|
| 573 | const std::vector<int>& start_write = domain->getStartWriteIndex(); |
---|
| 574 | const std::vector<int>& count_write = domain->getCountWriteIndex(); |
---|
| 575 | |
---|
[879] | 576 | if (!SuperClassWriter::dimExist(dimTwo)) SuperClassWriter::addDimension(dimTwo, 2); |
---|
| 577 | if (!isWrittenDomain(domid)) |
---|
| 578 | { |
---|
| 579 | dim0.clear(); |
---|
| 580 | SuperClassWriter::addVariable(domainName, NC_INT, dim0); |
---|
| 581 | SuperClassWriter::addAttribute("cf_role", StdString("mesh_topology"), &domainName); |
---|
[924] | 582 | SuperClassWriter::addAttribute("long_name", StdString("Topology data of 2D unstructured mesh"), &domainName); |
---|
| 583 | SuperClassWriter::addAttribute("topology_dimension", 2, &domainName); |
---|
[879] | 584 | SuperClassWriter::addAttribute("node_coordinates", node_x + " " + node_y, &domainName); |
---|
| 585 | } |
---|
[878] | 586 | |
---|
[879] | 587 | try |
---|
| 588 | { |
---|
| 589 | switch (SuperClass::type) |
---|
| 590 | { |
---|
| 591 | case (ONE_FILE) : |
---|
| 592 | { |
---|
| 593 | // Adding nodes |
---|
| 594 | if (domain->nvertex == 1) |
---|
| 595 | { |
---|
| 596 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 597 | { |
---|
[902] | 598 | SuperClassWriter::addDimension(dimNode, domain->ni_glo); |
---|
[879] | 599 | dim0.clear(); |
---|
| 600 | dim0.push_back(dimNode); |
---|
| 601 | SuperClassWriter::addVariable(node_x, NC_FLOAT, dim0); |
---|
| 602 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 603 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 604 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
| 605 | SuperClassWriter::addVariable(node_y, NC_FLOAT, dim0); |
---|
| 606 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 607 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 608 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 609 | } |
---|
| 610 | } // domain->nvertex == 1 |
---|
[878] | 611 | |
---|
[879] | 612 | // Adding edges and nodes, if nodes have not been defined previously |
---|
| 613 | if (domain->nvertex == 2) |
---|
| 614 | { |
---|
| 615 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 616 | { |
---|
[924] | 617 | SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo); |
---|
[879] | 618 | dim0.clear(); |
---|
| 619 | dim0.push_back(dimNode); |
---|
| 620 | SuperClassWriter::addVariable(node_x, NC_FLOAT, dim0); |
---|
| 621 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 622 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 623 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
| 624 | SuperClassWriter::addVariable(node_y, NC_FLOAT, dim0); |
---|
| 625 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 626 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 627 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 628 | } |
---|
[924] | 629 | SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName); |
---|
| 630 | SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName); |
---|
| 631 | SuperClassWriter::addDimension(dimEdge, domain->ni_glo); |
---|
| 632 | dim0.clear(); |
---|
| 633 | dim0.push_back(dimEdge); |
---|
| 634 | SuperClassWriter::addVariable(edge_x, NC_FLOAT, dim0); |
---|
| 635 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x); |
---|
| 636 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x); |
---|
| 637 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x); |
---|
| 638 | SuperClassWriter::addVariable(edge_y, NC_FLOAT, dim0); |
---|
| 639 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y); |
---|
| 640 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y); |
---|
| 641 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y); |
---|
| 642 | dim0.clear(); |
---|
| 643 | dim0.push_back(dimEdge); |
---|
| 644 | dim0.push_back(dimTwo); |
---|
| 645 | SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0); |
---|
| 646 | SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes); |
---|
| 647 | SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes); |
---|
| 648 | SuperClassWriter::addAttribute("start_index", 0, &edge_nodes); |
---|
[879] | 649 | } // domain->nvertex == 2 |
---|
[878] | 650 | |
---|
[879] | 651 | // Adding faces, edges, and nodes, if edges and nodes have not been defined previously |
---|
| 652 | if (domain->nvertex > 2) |
---|
| 653 | { |
---|
| 654 | // Nodes |
---|
| 655 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 656 | { |
---|
[924] | 657 | SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo); |
---|
[879] | 658 | dim0.clear(); |
---|
| 659 | dim0.push_back(dimNode); |
---|
| 660 | SuperClassWriter::addVariable(node_x, NC_FLOAT, dim0); |
---|
| 661 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 662 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 663 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
| 664 | SuperClassWriter::addVariable(node_y, NC_FLOAT, dim0); |
---|
| 665 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 666 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 667 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 668 | } |
---|
| 669 | if (!SuperClassWriter::varExist(edge_x) || !SuperClassWriter::varExist(edge_y)) |
---|
| 670 | { |
---|
| 671 | SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName); |
---|
| 672 | SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName); |
---|
[924] | 673 | SuperClassWriter::addDimension(dimEdge, domain->mesh->nbEdgesGlo); |
---|
[879] | 674 | dim0.clear(); |
---|
| 675 | dim0.push_back(dimEdge); |
---|
| 676 | SuperClassWriter::addVariable(edge_x, NC_FLOAT, dim0); |
---|
| 677 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x); |
---|
[924] | 678 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x); |
---|
[879] | 679 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x); |
---|
| 680 | SuperClassWriter::addVariable(edge_y, NC_FLOAT, dim0); |
---|
| 681 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y); |
---|
[924] | 682 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y); |
---|
[879] | 683 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y); |
---|
| 684 | dim0.clear(); |
---|
| 685 | dim0.push_back(dimEdge); |
---|
| 686 | dim0.push_back(dimTwo); |
---|
| 687 | SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0); |
---|
| 688 | SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes); |
---|
| 689 | SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes); |
---|
| 690 | SuperClassWriter::addAttribute("start_index", 0, &edge_nodes); |
---|
| 691 | } |
---|
[924] | 692 | SuperClassWriter::addAttribute("face_coordinates", face_x + " " + face_y, &domainName); |
---|
| 693 | SuperClassWriter::addAttribute("face_node_connectivity", face_nodes, &domainName); |
---|
| 694 | SuperClassWriter::addDimension(dimFace, domain->ni_glo); |
---|
| 695 | SuperClassWriter::addDimension(dimVertex, domain->nvertex); |
---|
| 696 | dim0.clear(); |
---|
| 697 | dim0.push_back(dimFace); |
---|
| 698 | SuperClassWriter::addVariable(face_x, NC_FLOAT, dim0); |
---|
| 699 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &face_x); |
---|
| 700 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh faces."), &face_x); |
---|
| 701 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &face_x); |
---|
| 702 | SuperClassWriter::addVariable(face_y, NC_FLOAT, dim0); |
---|
| 703 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &face_y); |
---|
| 704 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh faces."), &face_y); |
---|
| 705 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &face_y); |
---|
| 706 | dim0.clear(); |
---|
| 707 | dim0.push_back(dimFace); |
---|
| 708 | dim0.push_back(dimVertex); |
---|
| 709 | SuperClassWriter::addVariable(face_nodes, NC_INT, dim0); |
---|
| 710 | SuperClassWriter::addAttribute("cf_role", StdString("face_node_connectivity"), &face_nodes); |
---|
| 711 | SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its corner nodes."), &face_nodes); |
---|
| 712 | SuperClassWriter::addAttribute("start_index", 0, &face_nodes); |
---|
| 713 | dim0.clear(); |
---|
| 714 | dim0.push_back(dimFace); |
---|
| 715 | dim0.push_back(dimVertex); |
---|
| 716 | SuperClassWriter::addVariable(face_edges, NC_INT, dim0); |
---|
| 717 | SuperClassWriter::addAttribute("cf_role", StdString("face_edge_connectivity"), &face_edges); |
---|
| 718 | SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its edges."), &face_edges); |
---|
| 719 | SuperClassWriter::addAttribute("start_index", 0, &face_edges); |
---|
[929] | 720 | SuperClassWriter::addAttribute("_FillValue", 999999, &face_edges); |
---|
[924] | 721 | dim0.clear(); |
---|
| 722 | dim0.push_back(dimEdge); |
---|
| 723 | dim0.push_back(dimTwo); |
---|
| 724 | SuperClassWriter::addVariable(edge_faces, NC_INT, dim0); |
---|
| 725 | SuperClassWriter::addAttribute("cf_role", StdString("edge_face connectivity"), &edge_faces); |
---|
| 726 | SuperClassWriter::addAttribute("long_name", StdString("neighbor faces for edges"), &edge_faces); |
---|
| 727 | SuperClassWriter::addAttribute("start_index", 0, &edge_faces); |
---|
| 728 | SuperClassWriter::addAttribute("_FillValue", -999, &edge_faces); |
---|
| 729 | SuperClassWriter::addAttribute("comment", StdString("missing neighbor faces are indicated using _FillValue"), &edge_faces); |
---|
| 730 | dim0.clear(); |
---|
| 731 | dim0.push_back(dimFace); |
---|
| 732 | dim0.push_back(dimVertex); |
---|
| 733 | SuperClassWriter::addVariable(face_faces, NC_INT, dim0); |
---|
| 734 | SuperClassWriter::addAttribute("cf_role", StdString("face_face connectivity"), &face_faces); |
---|
| 735 | SuperClassWriter::addAttribute("long_name", StdString("Indicates which other faces neighbor each face"), &face_faces); |
---|
| 736 | SuperClassWriter::addAttribute("start_index", 0, &face_faces); |
---|
[929] | 737 | SuperClassWriter::addAttribute("_FillValue", 999999, &face_faces); |
---|
[924] | 738 | SuperClassWriter::addAttribute("flag_values", -1, &face_faces); |
---|
| 739 | SuperClassWriter::addAttribute("flag_meanings", StdString("out_of_mesh"), &face_faces); |
---|
[879] | 740 | } // domain->nvertex > 2 |
---|
[878] | 741 | |
---|
[879] | 742 | SuperClassWriter::definition_end(); |
---|
[878] | 743 | |
---|
[924] | 744 | std::vector<StdSize> startEdges(1) ; |
---|
| 745 | std::vector<StdSize> countEdges(1) ; |
---|
| 746 | std::vector<StdSize> startNodes(1) ; |
---|
| 747 | std::vector<StdSize> countNodes(1) ; |
---|
| 748 | std::vector<StdSize> startFaces(1) ; |
---|
| 749 | std::vector<StdSize> countFaces(1) ; |
---|
| 750 | std::vector<StdSize> startEdgeNodes(2) ; |
---|
| 751 | std::vector<StdSize> countEdgeNodes(2) ; |
---|
| 752 | std::vector<StdSize> startEdgeFaces(2) ; |
---|
| 753 | std::vector<StdSize> countEdgeFaces(2) ; |
---|
| 754 | std::vector<StdSize> startFaceConctv(2) ; |
---|
| 755 | std::vector<StdSize> countFaceConctv(2) ; |
---|
[902] | 756 | |
---|
[879] | 757 | if (!isWrittenDomain(domid)) |
---|
| 758 | { |
---|
| 759 | if (domain->nvertex == 1) |
---|
| 760 | { |
---|
[924] | 761 | if (domain->isEmpty()) |
---|
| 762 | { |
---|
| 763 | startNodes[0]=0 ; |
---|
| 764 | countNodes[0]=0 ; |
---|
| 765 | } |
---|
| 766 | else |
---|
| 767 | { |
---|
[1025] | 768 | startNodes[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 769 | countNodes[0] = count_write[0]; //domain->zoom_ni_srv ; |
---|
[924] | 770 | } |
---|
| 771 | |
---|
| 772 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 773 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
[879] | 774 | } |
---|
| 775 | else if (domain->nvertex == 2) |
---|
[924] | 776 | { |
---|
| 777 | if (domain->isEmpty()) |
---|
| 778 | { |
---|
| 779 | startEdges[0]=0 ; |
---|
| 780 | countEdges[0]=0 ; |
---|
| 781 | startNodes[0]=0 ; |
---|
| 782 | countNodes[0]=0 ; |
---|
| 783 | startEdgeNodes[0]=0; |
---|
| 784 | startEdgeNodes[1]=0; |
---|
| 785 | countEdgeNodes[0]=0; |
---|
| 786 | countEdgeNodes[1]=0; |
---|
| 787 | |
---|
| 788 | } |
---|
| 789 | else |
---|
| 790 | { |
---|
[1025] | 791 | startEdges[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 792 | countEdges[0] = count_write[0]; |
---|
[924] | 793 | startNodes[0] = domain->mesh->node_start; |
---|
| 794 | countNodes[0] = domain->mesh->node_count; |
---|
[1025] | 795 | startEdgeNodes[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
[924] | 796 | startEdgeNodes[1] = 0; |
---|
[1025] | 797 | countEdgeNodes[0] = count_write[0]; //domain->zoom_ni_srv; |
---|
[924] | 798 | countEdgeNodes[1]= 2; |
---|
| 799 | } |
---|
| 800 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 801 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
| 802 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 803 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 804 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
| 805 | } |
---|
[879] | 806 | else |
---|
| 807 | { |
---|
[924] | 808 | if (domain->isEmpty()) |
---|
| 809 | { |
---|
| 810 | startFaces[0] = 0 ; |
---|
| 811 | countFaces[0] = 0 ; |
---|
| 812 | startNodes[0] = 0; |
---|
| 813 | countNodes[0] = 0; |
---|
| 814 | startEdges[0] = 0; |
---|
| 815 | countEdges[0] = 0; |
---|
| 816 | startEdgeFaces[0] = 0; |
---|
| 817 | startEdgeFaces[1] = 0; |
---|
| 818 | countEdgeFaces[0] = 0; |
---|
| 819 | countEdgeFaces[1] = 0; |
---|
| 820 | startFaceConctv[0] = 0; |
---|
| 821 | startFaceConctv[1] = 0; |
---|
| 822 | countFaceConctv[0] = 0; |
---|
| 823 | countFaceConctv[1] = 0; |
---|
| 824 | } |
---|
| 825 | else |
---|
| 826 | { |
---|
[1025] | 827 | startFaces[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 828 | countFaces[0] = count_write[0]; //domain->zoom_ni_srv ; |
---|
[924] | 829 | startNodes[0] = domain->mesh->node_start; |
---|
| 830 | countNodes[0] = domain->mesh->node_count; |
---|
| 831 | startEdges[0] = domain->mesh->edge_start; |
---|
| 832 | countEdges[0] = domain->mesh->edge_count; |
---|
| 833 | startEdgeNodes[0] = domain->mesh->edge_start; |
---|
| 834 | startEdgeNodes[1] = 0; |
---|
| 835 | countEdgeNodes[0] = domain->mesh->edge_count; |
---|
| 836 | countEdgeNodes[1]= 2; |
---|
| 837 | startEdgeFaces[0] = domain->mesh->edge_start; |
---|
| 838 | startEdgeFaces[1]= 0; |
---|
| 839 | countEdgeFaces[0] = domain->mesh->edge_count; |
---|
| 840 | countEdgeFaces[1]= 2; |
---|
[1025] | 841 | startFaceConctv[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 842 | startFaceConctv[1] = 0; //0; |
---|
| 843 | countFaceConctv[0] = count_write[0]; //domain->zoom_ni_srv; |
---|
[924] | 844 | countFaceConctv[1] = domain->nvertex; |
---|
| 845 | } |
---|
| 846 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 847 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
| 848 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 849 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 850 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
| 851 | SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces); |
---|
| 852 | SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces); |
---|
| 853 | SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 854 | SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 855 | SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces); |
---|
| 856 | SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
[879] | 857 | } |
---|
| 858 | setWrittenDomain(domid); |
---|
| 859 | } // !isWrittenDomain |
---|
| 860 | else |
---|
| 861 | { |
---|
| 862 | if (domain->nvertex == 2) |
---|
| 863 | { |
---|
[1025] | 864 | startEdges[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 865 | countEdges[0] = count_write[0]; //domain->zoom_ni_srv ; |
---|
| 866 | startEdgeNodes[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 867 | startEdgeNodes[1] = 0; //0; |
---|
| 868 | countEdgeNodes[0] = count_write[0]; //domain->zoom_ni_srv; |
---|
[924] | 869 | countEdgeNodes[1]= 2; |
---|
| 870 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 871 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 872 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
[879] | 873 | } |
---|
| 874 | if (domain->nvertex > 2) |
---|
| 875 | { |
---|
[924] | 876 | |
---|
[879] | 877 | if (!domain->mesh->edgesAreWritten) |
---|
| 878 | { |
---|
[924] | 879 | startEdges[0] = domain->mesh->edge_start; |
---|
| 880 | countEdges[0] = domain->mesh->edge_count; |
---|
| 881 | startEdgeNodes[0] = domain->mesh->edge_start; |
---|
| 882 | startEdgeNodes[1] = 0; |
---|
| 883 | countEdgeNodes[0] = domain->mesh->edge_count; |
---|
| 884 | countEdgeNodes[1]= 2; |
---|
| 885 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 886 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 887 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
[879] | 888 | } |
---|
[1025] | 889 | startFaces[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 890 | countFaces[0] = count_write[0]; //domain->zoom_ni_srv; |
---|
[924] | 891 | startEdgeFaces[0] = domain->mesh->edge_start; |
---|
| 892 | startEdgeFaces[1]= 0; |
---|
| 893 | countEdgeFaces[0] = domain->mesh->edge_count; |
---|
| 894 | countEdgeFaces[1]= 2; |
---|
[1025] | 895 | startFaceConctv[0] = start_write[0]; //domain->zoom_ibegin_srv-domain->global_zoom_ibegin; |
---|
| 896 | startFaceConctv[1] = 0; //0; |
---|
| 897 | countFaceConctv[0] = count_write[0]; //domain->zoom_ni_srv; |
---|
[924] | 898 | countFaceConctv[1]= domain->nvertex; |
---|
| 899 | SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces); |
---|
| 900 | SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces); |
---|
| 901 | SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 902 | SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 903 | SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces); |
---|
| 904 | SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
[879] | 905 | } |
---|
| 906 | }// isWrittenDomain |
---|
[878] | 907 | |
---|
[879] | 908 | SuperClassWriter::definition_start(); |
---|
[878] | 909 | |
---|
[879] | 910 | break; |
---|
| 911 | } // ONE_FILE |
---|
[878] | 912 | |
---|
[879] | 913 | case (MULTI_FILE) : |
---|
| 914 | { |
---|
| 915 | break; |
---|
| 916 | } |
---|
[878] | 917 | |
---|
[879] | 918 | default : |
---|
| 919 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 920 | << "[ type = " << SuperClass::type << "]" |
---|
| 921 | << " not implemented yet !"); |
---|
| 922 | } // switch |
---|
| 923 | } // try |
---|
[878] | 924 | |
---|
[879] | 925 | catch (CNetCdfException& e) |
---|
| 926 | { |
---|
| 927 | StdString msg("On writing the domain : "); |
---|
| 928 | msg.append(domid); msg.append("\n"); |
---|
| 929 | msg.append("In the context : "); |
---|
| 930 | msg.append(context->getId()); msg.append("\n"); |
---|
| 931 | msg.append(e.what()); |
---|
[924] | 932 | ERROR("CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)", << msg); |
---|
[879] | 933 | } |
---|
[878] | 934 | |
---|
[879] | 935 | domain->addRelFile(this->filename); |
---|
| 936 | } |
---|
[878] | 937 | |
---|
[879] | 938 | //-------------------------------------------------------------- |
---|
[878] | 939 | |
---|
[879] | 940 | void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain) |
---|
[449] | 941 | { |
---|
| 942 | CContext* context = CContext::getCurrent() ; |
---|
| 943 | CContextServer* server=context->server ; |
---|
[488] | 944 | |
---|
[449] | 945 | if (domain->IsWritten(this->filename)) return; |
---|
| 946 | domain->checkAttributes(); |
---|
[488] | 947 | |
---|
| 948 | if (domain->isEmpty()) |
---|
[449] | 949 | if (SuperClass::type==MULTI_FILE) return ; |
---|
| 950 | |
---|
| 951 | std::vector<StdString> dim0, dim1; |
---|
[772] | 952 | StdString domid = domain->getDomainOutputName(); |
---|
[705] | 953 | if (isWrittenDomain(domid)) return ; |
---|
[774] | 954 | else setWrittenDomain(domid); |
---|
[705] | 955 | |
---|
[449] | 956 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
---|
| 957 | |
---|
| 958 | StdString dimXid = StdString("cell").append(appendDomid); |
---|
| 959 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
---|
[488] | 960 | |
---|
[449] | 961 | string lonid,latid,bounds_lonid,bounds_latid ; |
---|
[611] | 962 | string areaId = "area" + appendDomid; |
---|
[449] | 963 | |
---|
[1025] | 964 | const std::vector<int>& local_size_write = domain->getLocalWriteSize(); |
---|
| 965 | const std::vector<int>& global_size_write = domain->getGlobalWriteSize(); |
---|
| 966 | const std::vector<int>& start_write = domain->getStartWriteIndex(); |
---|
| 967 | const std::vector<int>& count_write = domain->getCountWriteIndex(); |
---|
| 968 | int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex; |
---|
| 969 | |
---|
[498] | 970 | try |
---|
[449] | 971 | { |
---|
[498] | 972 | switch (SuperClass::type) |
---|
| 973 | { |
---|
| 974 | case (MULTI_FILE) : |
---|
| 975 | { |
---|
| 976 | dim0.push_back(dimXid); |
---|
[1025] | 977 | SuperClassWriter::addDimension(dimXid, local_size_write[0]); |
---|
[488] | 978 | |
---|
[665] | 979 | lonid = StdString("lon").append(appendDomid); |
---|
| 980 | latid = StdString("lat").append(appendDomid); |
---|
[498] | 981 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 982 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
[665] | 983 | if (domain->hasLonLat) |
---|
| 984 | { |
---|
| 985 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
---|
| 986 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
---|
| 987 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 988 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
| 989 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 990 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
| 991 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
---|
| 992 | } |
---|
[498] | 993 | dim0.clear(); |
---|
| 994 | if (domain->hasBounds) |
---|
| 995 | { |
---|
| 996 | dim0.push_back(dimXid); |
---|
| 997 | dim0.push_back(dimVertId); |
---|
| 998 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
---|
| 999 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
---|
| 1000 | } |
---|
| 1001 | |
---|
| 1002 | dim0.clear(); |
---|
[449] | 1003 | dim0.push_back(dimXid); |
---|
[611] | 1004 | if (domain->hasArea) |
---|
| 1005 | { |
---|
| 1006 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
---|
[614] | 1007 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 1008 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 1009 | } |
---|
| 1010 | |
---|
[498] | 1011 | SuperClassWriter::definition_end(); |
---|
[449] | 1012 | |
---|
[665] | 1013 | if (domain->hasLonLat) |
---|
[498] | 1014 | { |
---|
[1025] | 1015 | SuperClassWriter::writeData(domain->latvalue, latid, isCollective, 0); |
---|
| 1016 | SuperClassWriter::writeData(domain->lonvalue, lonid, isCollective, 0); |
---|
[665] | 1017 | if (domain->hasBounds) |
---|
| 1018 | { |
---|
[1025] | 1019 | SuperClassWriter::writeData(domain->bounds_lonvalue, bounds_lonid, isCollective, 0); |
---|
| 1020 | SuperClassWriter::writeData(domain->bounds_latvalue, bounds_latid, isCollective, 0); |
---|
[665] | 1021 | } |
---|
[498] | 1022 | } |
---|
[611] | 1023 | |
---|
| 1024 | if (domain->hasArea) |
---|
[1025] | 1025 | SuperClassWriter::writeData(domain->areavalue, areaId, isCollective, 0); |
---|
[611] | 1026 | |
---|
[498] | 1027 | SuperClassWriter::definition_start(); |
---|
| 1028 | break ; |
---|
| 1029 | } |
---|
[488] | 1030 | |
---|
[498] | 1031 | case (ONE_FILE) : |
---|
| 1032 | { |
---|
| 1033 | lonid = StdString("lon").append(appendDomid); |
---|
| 1034 | latid = StdString("lat").append(appendDomid); |
---|
| 1035 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 1036 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
| 1037 | dim0.push_back(dimXid); |
---|
[1025] | 1038 | SuperClassWriter::addDimension(dimXid, global_size_write[0]); |
---|
[665] | 1039 | if (domain->hasLonLat) |
---|
| 1040 | { |
---|
| 1041 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
---|
| 1042 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
---|
| 1043 | |
---|
| 1044 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 1045 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
| 1046 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 1047 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
[1025] | 1048 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, nvertex); |
---|
[665] | 1049 | } |
---|
[498] | 1050 | dim0.clear(); |
---|
[449] | 1051 | |
---|
[498] | 1052 | if (domain->hasBounds) |
---|
| 1053 | { |
---|
| 1054 | dim0.push_back(dimXid); |
---|
| 1055 | dim0.push_back(dimVertId); |
---|
| 1056 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
---|
| 1057 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
---|
| 1058 | } |
---|
[488] | 1059 | |
---|
[611] | 1060 | if (domain->hasArea) |
---|
| 1061 | { |
---|
| 1062 | dim0.clear(); |
---|
| 1063 | dim0.push_back(dimXid); |
---|
| 1064 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
---|
[614] | 1065 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 1066 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 1067 | } |
---|
| 1068 | |
---|
[498] | 1069 | SuperClassWriter::definition_end(); |
---|
[488] | 1070 | |
---|
[498] | 1071 | std::vector<StdSize> start(1), startBounds(2) ; |
---|
| 1072 | std::vector<StdSize> count(1), countBounds(2) ; |
---|
| 1073 | if (domain->isEmpty()) |
---|
| 1074 | { |
---|
| 1075 | start[0]=0 ; |
---|
| 1076 | count[0]=0 ; |
---|
| 1077 | startBounds[1]=0 ; |
---|
[1025] | 1078 | countBounds[1]=nvertex ; |
---|
[498] | 1079 | startBounds[0]=0 ; |
---|
| 1080 | countBounds[0]=0 ; |
---|
| 1081 | } |
---|
| 1082 | else |
---|
| 1083 | { |
---|
[1025] | 1084 | start[0]=start_write[0]; |
---|
| 1085 | count[0]=count_write[0]; |
---|
| 1086 | startBounds[0]=start_write[0]; |
---|
[498] | 1087 | startBounds[1]=0 ; |
---|
[1025] | 1088 | countBounds[0]=count_write[0]; |
---|
| 1089 | countBounds[1]=nvertex ; |
---|
[498] | 1090 | } |
---|
[665] | 1091 | |
---|
| 1092 | if (domain->hasLonLat) |
---|
[498] | 1093 | { |
---|
[1025] | 1094 | SuperClassWriter::writeData(domain->latvalue, latid, isCollective, 0,&start,&count); |
---|
| 1095 | SuperClassWriter::writeData(domain->lonvalue, lonid, isCollective, 0,&start,&count); |
---|
[665] | 1096 | if (domain->hasBounds) |
---|
| 1097 | { |
---|
[1025] | 1098 | SuperClassWriter::writeData(domain->bounds_lonvalue, bounds_lonid, isCollective, 0,&startBounds,&countBounds); |
---|
| 1099 | SuperClassWriter::writeData(domain->bounds_latvalue, bounds_latid, isCollective, 0,&startBounds,&countBounds); |
---|
[665] | 1100 | } |
---|
[498] | 1101 | } |
---|
[488] | 1102 | |
---|
[611] | 1103 | if (domain->hasArea) |
---|
[1025] | 1104 | SuperClassWriter::writeData(domain->areavalue, areaId, isCollective, 0, &start, &count); |
---|
[488] | 1105 | |
---|
[498] | 1106 | SuperClassWriter::definition_start(); |
---|
[488] | 1107 | |
---|
[498] | 1108 | break; |
---|
| 1109 | } |
---|
| 1110 | default : |
---|
| 1111 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 1112 | << "[ type = " << SuperClass::type << "]" |
---|
| 1113 | << " not implemented yet !"); |
---|
| 1114 | } |
---|
[219] | 1115 | } |
---|
[498] | 1116 | catch (CNetCdfException& e) |
---|
| 1117 | { |
---|
| 1118 | StdString msg("On writing the domain : "); |
---|
| 1119 | msg.append(domid); msg.append("\n"); |
---|
| 1120 | msg.append("In the context : "); |
---|
| 1121 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1122 | msg.append(e.what()); |
---|
| 1123 | ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg); |
---|
| 1124 | } |
---|
[219] | 1125 | domain->addRelFile(this->filename); |
---|
| 1126 | } |
---|
| 1127 | //-------------------------------------------------------------- |
---|
| 1128 | |
---|
[347] | 1129 | void CNc4DataOutput::writeAxis_(CAxis* axis) |
---|
[219] | 1130 | { |
---|
[1025] | 1131 | CContext* context = CContext::getCurrent(); |
---|
| 1132 | |
---|
[1030] | 1133 | if (axis->IsWritten(this->filename)) return; |
---|
| 1134 | axis->checkAttributes(); |
---|
[488] | 1135 | |
---|
[1129] | 1136 | axis->computeWrittenIndex(); |
---|
| 1137 | |
---|
[1099] | 1138 | int zoom_size = (MULTI_FILE == SuperClass::type) ? axis->zoom_n |
---|
| 1139 | : axis->global_zoom_n; |
---|
| 1140 | int zoom_begin = (MULTI_FILE == SuperClass::type) ? axis->zoom_begin |
---|
| 1141 | : axis->global_zoom_begin; |
---|
| 1142 | |
---|
| 1143 | if ((0 == axis->zoom_n) && (MULTI_FILE == SuperClass::type)) return; |
---|
| 1144 | |
---|
[1030] | 1145 | std::vector<StdString> dims; |
---|
| 1146 | StdString axisid = axis->getAxisOutputName(); |
---|
| 1147 | if (isWrittenAxis(axisid)) return ; |
---|
| 1148 | else setWrittenAxis(axisid); |
---|
[705] | 1149 | |
---|
[1030] | 1150 | try |
---|
| 1151 | { |
---|
[1099] | 1152 | SuperClassWriter::addDimension(axisid, zoom_size); |
---|
[1030] | 1153 | if (axis->hasValue) |
---|
[816] | 1154 | { |
---|
[1030] | 1155 | dims.push_back(axisid); |
---|
| 1156 | SuperClassWriter::addVariable(axisid, NC_FLOAT, dims); |
---|
[219] | 1157 | |
---|
[1030] | 1158 | if (!axis->name.isEmpty()) |
---|
| 1159 | SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid); |
---|
[219] | 1160 | |
---|
[1030] | 1161 | if (!axis->standard_name.isEmpty()) |
---|
| 1162 | SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid); |
---|
[540] | 1163 | |
---|
[1030] | 1164 | if (!axis->long_name.isEmpty()) |
---|
| 1165 | SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid); |
---|
[219] | 1166 | |
---|
[1030] | 1167 | if (!axis->unit.isEmpty()) |
---|
| 1168 | SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid); |
---|
[219] | 1169 | |
---|
[1030] | 1170 | if (!axis->positive.isEmpty()) |
---|
| 1171 | { |
---|
| 1172 | SuperClassWriter::addAttribute("axis", string("Z"), &axisid); |
---|
| 1173 | SuperClassWriter::addAttribute("positive", |
---|
| 1174 | (axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"), |
---|
| 1175 | &axisid); |
---|
| 1176 | } |
---|
[399] | 1177 | |
---|
[1030] | 1178 | StdString axisBoundsId = axisid + "_bounds"; |
---|
| 1179 | if (!axis->bounds.isEmpty()) |
---|
| 1180 | { |
---|
| 1181 | dims.push_back("axis_nbounds"); |
---|
| 1182 | SuperClassWriter::addVariable(axisBoundsId, NC_FLOAT, dims); |
---|
| 1183 | SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid); |
---|
| 1184 | } |
---|
[488] | 1185 | |
---|
[1030] | 1186 | SuperClassWriter::definition_end(); |
---|
[816] | 1187 | |
---|
[1129] | 1188 | CArray<size_t, 1>& indexToWrite = axis->localIndexToWriteOnServer; |
---|
| 1189 | int nbWritten = indexToWrite.numElements(); |
---|
| 1190 | CArray<double,1> axis_value(indexToWrite.numElements()); |
---|
| 1191 | for (int i = 0; i < nbWritten; i++) axis_value(i) = axis->value(indexToWrite(i)); |
---|
| 1192 | CArray<double,2> axis_bounds; |
---|
| 1193 | |
---|
[1030] | 1194 | switch (SuperClass::type) |
---|
| 1195 | { |
---|
| 1196 | case MULTI_FILE: |
---|
[816] | 1197 | { |
---|
[1129] | 1198 | // CArray<double,1> axis_value(axis->zoom_n); |
---|
| 1199 | // for (int i = 0; i < axis->zoom_n; i++) axis_value(i) = axis->value(i); |
---|
[1030] | 1200 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0); |
---|
[633] | 1201 | |
---|
[1030] | 1202 | if (!axis->bounds.isEmpty()) |
---|
| 1203 | SuperClassWriter::writeData(axis->bounds, axisBoundsId, isCollective, 0); |
---|
[488] | 1204 | |
---|
[1030] | 1205 | SuperClassWriter::definition_start(); |
---|
[219] | 1206 | |
---|
[1030] | 1207 | break; |
---|
| 1208 | } |
---|
| 1209 | case ONE_FILE: |
---|
| 1210 | { |
---|
[1129] | 1211 | // CArray<double,1> axis_value(axis->zoom_n); |
---|
| 1212 | // axis_value = axis->value; |
---|
[1030] | 1213 | std::vector<StdSize> start(1), startBounds(2) ; |
---|
| 1214 | std::vector<StdSize> count(1), countBounds(2) ; |
---|
[1099] | 1215 | start[0] = startBounds[0] = zoom_begin - axis->global_zoom_begin; |
---|
| 1216 | count[0] = countBounds[0] = zoom_size; |
---|
[1030] | 1217 | startBounds[1] = 0; |
---|
| 1218 | countBounds[1] = 2; |
---|
| 1219 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count); |
---|
[633] | 1220 | |
---|
[1030] | 1221 | if (!axis->bounds.isEmpty()) |
---|
[1129] | 1222 | { |
---|
| 1223 | axis_bounds.resize(2, indexToWrite.numElements()); |
---|
| 1224 | for (int i = 0; i < nbWritten; ++i) |
---|
| 1225 | { |
---|
| 1226 | axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i))); |
---|
| 1227 | axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i))); |
---|
| 1228 | } |
---|
[1030] | 1229 | SuperClassWriter::writeData(axis->bounds, axisBoundsId, isCollective, 0, &startBounds, &countBounds); |
---|
[1129] | 1230 | } |
---|
[609] | 1231 | |
---|
[1030] | 1232 | SuperClassWriter::definition_start(); |
---|
[609] | 1233 | |
---|
[1030] | 1234 | break; |
---|
[816] | 1235 | } |
---|
[1030] | 1236 | default : |
---|
| 1237 | ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", |
---|
| 1238 | << "[ type = " << SuperClass::type << "]" |
---|
| 1239 | << " not implemented yet !"); |
---|
[609] | 1240 | } |
---|
| 1241 | } |
---|
[1030] | 1242 | } |
---|
| 1243 | catch (CNetCdfException& e) |
---|
| 1244 | { |
---|
| 1245 | StdString msg("On writing the axis : "); |
---|
| 1246 | msg.append(axisid); msg.append("\n"); |
---|
| 1247 | msg.append("In the context : "); |
---|
| 1248 | CContext* context = CContext::getCurrent() ; |
---|
| 1249 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1250 | msg.append(e.what()); |
---|
| 1251 | ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg); |
---|
| 1252 | } |
---|
| 1253 | |
---|
[1027] | 1254 | axis->addRelFile(this->filename); |
---|
[391] | 1255 | } |
---|
[488] | 1256 | |
---|
[887] | 1257 | void CNc4DataOutput::writeScalar_(CScalar* scalar) |
---|
| 1258 | { |
---|
| 1259 | if (scalar->IsWritten(this->filename)) return; |
---|
| 1260 | scalar->checkAttributes(); |
---|
| 1261 | int scalarSize = 1; |
---|
| 1262 | |
---|
| 1263 | StdString scalaId = scalar->getScalarOutputName(); |
---|
| 1264 | if (isWrittenAxis(scalaId)) return ; |
---|
| 1265 | else setWrittenAxis(scalaId); |
---|
| 1266 | |
---|
| 1267 | try |
---|
| 1268 | { |
---|
| 1269 | if (!scalar->value.isEmpty()) |
---|
| 1270 | { |
---|
| 1271 | // dims.push_back(scalaId); |
---|
| 1272 | std::vector<StdString> dims; |
---|
| 1273 | SuperClassWriter::addVariable(scalaId, NC_FLOAT, dims); |
---|
| 1274 | |
---|
| 1275 | if (!scalar->name.isEmpty()) |
---|
| 1276 | SuperClassWriter::addAttribute("name", scalar->name.getValue(), &scalaId); |
---|
| 1277 | |
---|
| 1278 | if (!scalar->standard_name.isEmpty()) |
---|
| 1279 | SuperClassWriter::addAttribute("standard_name", scalar->standard_name.getValue(), &scalaId); |
---|
| 1280 | |
---|
| 1281 | if (!scalar->long_name.isEmpty()) |
---|
| 1282 | SuperClassWriter::addAttribute("long_name", scalar->long_name.getValue(), &scalaId); |
---|
| 1283 | |
---|
| 1284 | if (!scalar->unit.isEmpty()) |
---|
| 1285 | SuperClassWriter::addAttribute("units", scalar->unit.getValue(), &scalaId); |
---|
| 1286 | |
---|
| 1287 | SuperClassWriter::definition_end(); |
---|
| 1288 | |
---|
| 1289 | switch (SuperClass::type) |
---|
| 1290 | { |
---|
| 1291 | case MULTI_FILE: |
---|
| 1292 | { |
---|
| 1293 | CArray<double,1> scalarValue(scalarSize); |
---|
| 1294 | scalarValue(0) = scalar->value; |
---|
| 1295 | SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0); |
---|
| 1296 | SuperClassWriter::definition_start(); |
---|
| 1297 | |
---|
| 1298 | break; |
---|
| 1299 | } |
---|
| 1300 | case ONE_FILE: |
---|
| 1301 | { |
---|
| 1302 | CArray<double,1> scalarValue(scalarSize); |
---|
| 1303 | scalarValue(0) = scalar->value; |
---|
| 1304 | |
---|
| 1305 | std::vector<StdSize> start(1); |
---|
| 1306 | std::vector<StdSize> count(1); |
---|
| 1307 | start[0] = 0; |
---|
| 1308 | count[0] = 1; |
---|
| 1309 | SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0, &start, &count); |
---|
| 1310 | SuperClassWriter::definition_start(); |
---|
| 1311 | |
---|
| 1312 | break; |
---|
| 1313 | } |
---|
| 1314 | default : |
---|
| 1315 | ERROR("CNc4DataOutput::writeAxis_(CAxis* scalar)", |
---|
| 1316 | << "[ type = " << SuperClass::type << "]" |
---|
| 1317 | << " not implemented yet !"); |
---|
| 1318 | } |
---|
| 1319 | } |
---|
| 1320 | } |
---|
| 1321 | catch (CNetCdfException& e) |
---|
| 1322 | { |
---|
| 1323 | StdString msg("On writing the scalar : "); |
---|
| 1324 | msg.append(scalaId); msg.append("\n"); |
---|
| 1325 | msg.append("In the context : "); |
---|
| 1326 | CContext* context = CContext::getCurrent() ; |
---|
| 1327 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1328 | msg.append(e.what()); |
---|
| 1329 | ERROR("CNc4DataOutput::writeScalar_(CScalar* scalar)", << msg); |
---|
| 1330 | } |
---|
| 1331 | scalar->addRelFile(this->filename); |
---|
| 1332 | } |
---|
| 1333 | |
---|
[676] | 1334 | //-------------------------------------------------------------- |
---|
| 1335 | |
---|
| 1336 | void CNc4DataOutput::writeGridCompressed_(CGrid* grid) |
---|
| 1337 | { |
---|
| 1338 | if (grid->isScalarGrid() || grid->isWrittenCompressed(this->filename)) return; |
---|
| 1339 | |
---|
| 1340 | try |
---|
| 1341 | { |
---|
[887] | 1342 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[676] | 1343 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 1344 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
[887] | 1345 | std::vector<StdString> scalarList = grid->getScalarList(); |
---|
| 1346 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0; |
---|
[676] | 1347 | |
---|
| 1348 | std::vector<StdString> dims; |
---|
| 1349 | |
---|
| 1350 | if (grid->isCompressible()) |
---|
| 1351 | { |
---|
| 1352 | StdString varId = grid->getId() + "_points"; |
---|
| 1353 | |
---|
| 1354 | int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes(); |
---|
| 1355 | SuperClassWriter::addDimension(varId, nbIndexes); |
---|
| 1356 | |
---|
| 1357 | dims.push_back(varId); |
---|
| 1358 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
| 1359 | |
---|
| 1360 | StdOStringStream compress; |
---|
| 1361 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 1362 | { |
---|
[887] | 1363 | if (2 == axisDomainOrder(i)) |
---|
[676] | 1364 | { |
---|
| 1365 | CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]); |
---|
[772] | 1366 | StdString domId = domain->getDomainOutputName(); |
---|
[676] | 1367 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
| 1368 | |
---|
| 1369 | switch (domain->type) |
---|
| 1370 | { |
---|
| 1371 | case CDomain::type_attr::curvilinear: |
---|
| 1372 | compress << "y" << appendDomId << " x" << appendDomId; |
---|
| 1373 | break; |
---|
| 1374 | case CDomain::type_attr::rectilinear: |
---|
| 1375 | compress << "lat" << appendDomId << " lon" << appendDomId; |
---|
| 1376 | break; |
---|
| 1377 | case CDomain::type_attr::unstructured: |
---|
| 1378 | compress << "cell" << appendDomId; |
---|
| 1379 | break; |
---|
| 1380 | } |
---|
| 1381 | ++idxDomain; |
---|
| 1382 | } |
---|
[887] | 1383 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 1384 | { |
---|
| 1385 | CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]); |
---|
[772] | 1386 | compress << axis->getAxisOutputName(); |
---|
[676] | 1387 | ++idxAxis; |
---|
| 1388 | } |
---|
[887] | 1389 | else |
---|
| 1390 | { |
---|
| 1391 | CScalar* scalar = CScalar::get(scalarList[scalarList.size() - idxScalar - 1]); |
---|
| 1392 | compress << scalar->getScalarOutputName(); |
---|
| 1393 | ++idxScalar; |
---|
| 1394 | } |
---|
[676] | 1395 | |
---|
| 1396 | if (i != 0) compress << ' '; |
---|
| 1397 | } |
---|
| 1398 | SuperClassWriter::addAttribute("compress", compress.str(), &varId); |
---|
| 1399 | |
---|
| 1400 | grid->computeCompressedIndex(); |
---|
| 1401 | |
---|
| 1402 | CArray<int, 1> indexes(grid->getNumberWrittenIndexes()); |
---|
| 1403 | std::map<int, CArray<size_t, 1> >::const_iterator it; |
---|
| 1404 | for (it = grid->outIndexFromClient.begin(); it != grid->outIndexFromClient.end(); ++it) |
---|
| 1405 | { |
---|
| 1406 | const CArray<size_t, 1> compressedIndexes = grid->compressedOutIndexFromClient[it->first]; |
---|
| 1407 | for (int i = 0; i < it->second.numElements(); i++) |
---|
| 1408 | indexes(compressedIndexes(i)) = it->second(i); |
---|
| 1409 | } |
---|
| 1410 | |
---|
| 1411 | switch (SuperClass::type) |
---|
| 1412 | { |
---|
| 1413 | case (MULTI_FILE): |
---|
| 1414 | { |
---|
| 1415 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
| 1416 | break; |
---|
| 1417 | } |
---|
| 1418 | case (ONE_FILE): |
---|
| 1419 | { |
---|
| 1420 | if (grid->doGridHaveDataDistributed()) |
---|
| 1421 | grid->getDistributionServer()->computeGlobalIndex(indexes); |
---|
| 1422 | |
---|
| 1423 | std::vector<StdSize> start, count; |
---|
| 1424 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 1425 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 1426 | |
---|
| 1427 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
| 1428 | break; |
---|
| 1429 | } |
---|
| 1430 | } |
---|
| 1431 | } |
---|
| 1432 | else |
---|
| 1433 | { |
---|
| 1434 | for (int i = 0; i < numElement; ++i) |
---|
| 1435 | { |
---|
| 1436 | StdString varId, compress; |
---|
| 1437 | CArray<int, 1> indexes; |
---|
| 1438 | bool isDistributed; |
---|
| 1439 | StdSize nbIndexes, totalNbIndexes, offset; |
---|
| 1440 | int firstGlobalIndex; |
---|
| 1441 | |
---|
[887] | 1442 | if (2 == axisDomainOrder(i)) |
---|
[676] | 1443 | { |
---|
| 1444 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[774] | 1445 | StdString domId = domain->getDomainOutputName(); |
---|
| 1446 | |
---|
[676] | 1447 | if (!domain->isCompressible() |
---|
| 1448 | || domain->type == CDomain::type_attr::unstructured |
---|
[774] | 1449 | || domain->isWrittenCompressed(this->filename) |
---|
| 1450 | || isWrittenCompressedDomain(domId)) |
---|
[676] | 1451 | continue; |
---|
| 1452 | |
---|
| 1453 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
| 1454 | |
---|
| 1455 | varId = domId + "_points"; |
---|
| 1456 | switch (domain->type) |
---|
| 1457 | { |
---|
| 1458 | case CDomain::type_attr::curvilinear: |
---|
| 1459 | compress = "y" + appendDomId + " x" + appendDomId; |
---|
| 1460 | break; |
---|
| 1461 | case CDomain::type_attr::rectilinear: |
---|
| 1462 | compress = "lat" + appendDomId + " lon" + appendDomId; |
---|
| 1463 | break; |
---|
| 1464 | } |
---|
| 1465 | |
---|
| 1466 | const std::vector<int>& indexesToWrite = domain->getIndexesToWrite(); |
---|
| 1467 | indexes.resize(indexesToWrite.size()); |
---|
| 1468 | for (int n = 0; n < indexes.numElements(); ++n) |
---|
| 1469 | indexes(n) = indexesToWrite[n]; |
---|
| 1470 | |
---|
| 1471 | isDistributed = domain->isDistributed(); |
---|
| 1472 | nbIndexes = domain->getNumberWrittenIndexes(); |
---|
| 1473 | totalNbIndexes = domain->getTotalNumberWrittenIndexes(); |
---|
| 1474 | offset = domain->getOffsetWrittenIndexes(); |
---|
| 1475 | firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo; |
---|
| 1476 | |
---|
| 1477 | domain->addRelFileCompressed(this->filename); |
---|
[774] | 1478 | setWrittenCompressedDomain(domId); |
---|
[676] | 1479 | ++idxDomain; |
---|
| 1480 | } |
---|
[887] | 1481 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 1482 | { |
---|
| 1483 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
[774] | 1484 | StdString axisId = axis->getAxisOutputName(); |
---|
| 1485 | |
---|
| 1486 | if (!axis->isCompressible() |
---|
| 1487 | || axis->isWrittenCompressed(this->filename) |
---|
| 1488 | || isWrittenCompressedAxis(axisId)) |
---|
[676] | 1489 | continue; |
---|
| 1490 | |
---|
| 1491 | varId = axisId + "_points"; |
---|
| 1492 | compress = axisId; |
---|
| 1493 | |
---|
| 1494 | const std::vector<int>& indexesToWrite = axis->getIndexesToWrite(); |
---|
| 1495 | indexes.resize(indexesToWrite.size()); |
---|
| 1496 | for (int n = 0; n < indexes.numElements(); ++n) |
---|
| 1497 | indexes(n) = indexesToWrite[n]; |
---|
| 1498 | |
---|
| 1499 | isDistributed = axis->isDistributed(); |
---|
| 1500 | nbIndexes = axis->getNumberWrittenIndexes(); |
---|
| 1501 | totalNbIndexes = axis->getTotalNumberWrittenIndexes(); |
---|
| 1502 | offset = axis->getOffsetWrittenIndexes(); |
---|
| 1503 | firstGlobalIndex = axis->begin; |
---|
| 1504 | |
---|
| 1505 | axis->addRelFileCompressed(this->filename); |
---|
[774] | 1506 | setWrittenCompressedAxis(axisId); |
---|
[676] | 1507 | ++idxAxis; |
---|
| 1508 | } |
---|
[887] | 1509 | else |
---|
| 1510 | { |
---|
| 1511 | } |
---|
[676] | 1512 | |
---|
| 1513 | if (!varId.empty()) |
---|
| 1514 | { |
---|
| 1515 | SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes); |
---|
| 1516 | |
---|
| 1517 | dims.clear(); |
---|
| 1518 | dims.push_back(varId); |
---|
| 1519 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
| 1520 | |
---|
| 1521 | SuperClassWriter::addAttribute("compress", compress, &varId); |
---|
| 1522 | |
---|
| 1523 | switch (SuperClass::type) |
---|
| 1524 | { |
---|
| 1525 | case (MULTI_FILE): |
---|
| 1526 | { |
---|
| 1527 | indexes -= firstGlobalIndex; |
---|
| 1528 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
| 1529 | break; |
---|
| 1530 | } |
---|
| 1531 | case (ONE_FILE): |
---|
| 1532 | { |
---|
| 1533 | std::vector<StdSize> start, count; |
---|
| 1534 | start.push_back(offset); |
---|
| 1535 | count.push_back(nbIndexes); |
---|
| 1536 | |
---|
| 1537 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
| 1538 | break; |
---|
| 1539 | } |
---|
| 1540 | } |
---|
| 1541 | } |
---|
| 1542 | } |
---|
| 1543 | |
---|
| 1544 | if (!dims.empty()) |
---|
| 1545 | grid->computeCompressedIndex(); |
---|
| 1546 | } |
---|
| 1547 | |
---|
| 1548 | grid->addRelFileCompressed(this->filename); |
---|
| 1549 | } |
---|
| 1550 | catch (CNetCdfException& e) |
---|
| 1551 | { |
---|
| 1552 | StdString msg("On writing compressed grid : "); |
---|
| 1553 | msg.append(grid->getId()); msg.append("\n"); |
---|
| 1554 | msg.append("In the context : "); |
---|
| 1555 | CContext* context = CContext::getCurrent(); |
---|
| 1556 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1557 | msg.append(e.what()); |
---|
| 1558 | ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg); |
---|
| 1559 | } |
---|
| 1560 | } |
---|
| 1561 | |
---|
| 1562 | //-------------------------------------------------------------- |
---|
| 1563 | |
---|
[391] | 1564 | void CNc4DataOutput::writeTimeDimension_(void) |
---|
| 1565 | { |
---|
[498] | 1566 | try |
---|
| 1567 | { |
---|
[802] | 1568 | SuperClassWriter::addDimension(getTimeCounterName()); |
---|
[498] | 1569 | } |
---|
| 1570 | catch (CNetCdfException& e) |
---|
| 1571 | { |
---|
[614] | 1572 | StdString msg("On writing time dimension : time_couter\n"); |
---|
[498] | 1573 | msg.append("In the context : "); |
---|
| 1574 | CContext* context = CContext::getCurrent() ; |
---|
| 1575 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1576 | msg.append(e.what()); |
---|
| 1577 | ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg); |
---|
| 1578 | } |
---|
[391] | 1579 | } |
---|
[676] | 1580 | |
---|
[219] | 1581 | //-------------------------------------------------------------- |
---|
| 1582 | |
---|
[347] | 1583 | void CNc4DataOutput::writeField_(CField* field) |
---|
[219] | 1584 | { |
---|
[347] | 1585 | CContext* context = CContext::getCurrent() ; |
---|
[300] | 1586 | CContextServer* server=context->server ; |
---|
| 1587 | |
---|
[219] | 1588 | std::vector<StdString> dims, coodinates; |
---|
[347] | 1589 | CGrid* grid = field->grid; |
---|
[567] | 1590 | if (!grid->doGridHaveDataToWrite()) |
---|
| 1591 | if (SuperClass::type==MULTI_FILE) return ; |
---|
[488] | 1592 | |
---|
[887] | 1593 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
| 1594 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0; |
---|
[567] | 1595 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 1596 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
[887] | 1597 | std::vector<StdString> scalarList = grid->getScalarList(); |
---|
[219] | 1598 | |
---|
[802] | 1599 | StdString timeid = getTimeCounterName(); |
---|
[567] | 1600 | StdString dimXid,dimYid; |
---|
| 1601 | std::deque<StdString> dimIdList, dimCoordList; |
---|
[611] | 1602 | bool hasArea = false; |
---|
| 1603 | StdString cellMeasures = "area:"; |
---|
[676] | 1604 | bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output; |
---|
[488] | 1605 | |
---|
[567] | 1606 | for (int i = 0; i < numElement; ++i) |
---|
[434] | 1607 | { |
---|
[887] | 1608 | if (2 == axisDomainOrder(i)) |
---|
[567] | 1609 | { |
---|
| 1610 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[772] | 1611 | StdString domId = domain->getDomainOutputName(); |
---|
[676] | 1612 | StdString appendDomId = singleDomain ? "" : "_" + domId ; |
---|
| 1613 | |
---|
| 1614 | if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured) |
---|
| 1615 | { |
---|
| 1616 | dimIdList.push_back(domId + "_points"); |
---|
| 1617 | field->setUseCompressedOutput(); |
---|
| 1618 | } |
---|
| 1619 | |
---|
[567] | 1620 | switch (domain->type) |
---|
| 1621 | { |
---|
[676] | 1622 | case CDomain::type_attr::curvilinear: |
---|
| 1623 | if (!compressedOutput || !domain->isCompressible()) |
---|
| 1624 | { |
---|
| 1625 | dimXid = StdString("x").append(appendDomId); |
---|
| 1626 | dimIdList.push_back(dimXid); |
---|
| 1627 | dimYid = StdString("y").append(appendDomId); |
---|
| 1628 | dimIdList.push_back(dimYid); |
---|
| 1629 | } |
---|
| 1630 | dimCoordList.push_back(StdString("nav_lon").append(appendDomId)); |
---|
| 1631 | dimCoordList.push_back(StdString("nav_lat").append(appendDomId)); |
---|
[567] | 1632 | break ; |
---|
[676] | 1633 | case CDomain::type_attr::rectilinear: |
---|
| 1634 | if (!compressedOutput || !domain->isCompressible()) |
---|
| 1635 | { |
---|
| 1636 | dimXid = StdString("lon").append(appendDomId); |
---|
| 1637 | dimIdList.push_back(dimXid); |
---|
| 1638 | dimYid = StdString("lat").append(appendDomId); |
---|
| 1639 | dimIdList.push_back(dimYid); |
---|
| 1640 | } |
---|
[567] | 1641 | break ; |
---|
[676] | 1642 | case CDomain::type_attr::unstructured: |
---|
[878] | 1643 | { |
---|
[879] | 1644 | if (SuperClassWriter::useCFConvention) |
---|
| 1645 | { |
---|
| 1646 | dimXid = StdString("cell").append(appendDomId); |
---|
| 1647 | dimIdList.push_back(dimXid); |
---|
| 1648 | dimCoordList.push_back(StdString("lon").append(appendDomId)); |
---|
| 1649 | dimCoordList.push_back(StdString("lat").append(appendDomId)); |
---|
| 1650 | } |
---|
| 1651 | else |
---|
| 1652 | { |
---|
| 1653 | StdString domainName = domain->name; |
---|
| 1654 | if (domain->nvertex == 1) |
---|
| 1655 | { |
---|
| 1656 | dimXid = "n" + domainName + "_node"; |
---|
| 1657 | dimIdList.push_back(dimXid); |
---|
| 1658 | dimCoordList.push_back(StdString(domainName + "_node_x")); |
---|
| 1659 | dimCoordList.push_back(StdString(domainName + "_node_y")); |
---|
| 1660 | } |
---|
| 1661 | else if (domain->nvertex == 2) |
---|
| 1662 | { |
---|
| 1663 | dimXid = "n" + domainName + "_edge"; |
---|
| 1664 | dimIdList.push_back(dimXid); |
---|
| 1665 | dimCoordList.push_back(StdString(domainName + "_edge_x")); |
---|
| 1666 | dimCoordList.push_back(StdString(domainName + "_edge_y")); |
---|
| 1667 | } |
---|
| 1668 | else |
---|
| 1669 | { |
---|
| 1670 | dimXid = "n" + domainName + "_face"; |
---|
| 1671 | dimIdList.push_back(dimXid); |
---|
| 1672 | dimCoordList.push_back(StdString(domainName + "_face_x")); |
---|
| 1673 | dimCoordList.push_back(StdString(domainName + "_face_y")); |
---|
| 1674 | } |
---|
| 1675 | } // ugrid convention |
---|
| 1676 | } // case unstructured domain |
---|
[676] | 1677 | } |
---|
[878] | 1678 | |
---|
[676] | 1679 | if (domain->hasArea) |
---|
| 1680 | { |
---|
| 1681 | hasArea = true; |
---|
| 1682 | cellMeasures += " area" + appendDomId; |
---|
| 1683 | } |
---|
| 1684 | ++idxDomain; |
---|
[567] | 1685 | } |
---|
[887] | 1686 | else if (1 == axisDomainOrder(i)) |
---|
[567] | 1687 | { |
---|
| 1688 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
[772] | 1689 | StdString axisId = axis->getAxisOutputName(); |
---|
[676] | 1690 | |
---|
| 1691 | if (compressedOutput && axis->isCompressible()) |
---|
| 1692 | { |
---|
| 1693 | dimIdList.push_back(axisId + "_points"); |
---|
| 1694 | field->setUseCompressedOutput(); |
---|
| 1695 | } |
---|
| 1696 | else |
---|
| 1697 | dimIdList.push_back(axisId); |
---|
| 1698 | |
---|
| 1699 | dimCoordList.push_back(axisId); |
---|
| 1700 | ++idxAxis; |
---|
[567] | 1701 | } |
---|
[887] | 1702 | else // scalar |
---|
| 1703 | { |
---|
| 1704 | /* Do nothing here */ |
---|
| 1705 | } |
---|
[567] | 1706 | } |
---|
[488] | 1707 | |
---|
| 1708 | /* |
---|
[300] | 1709 | StdString lonid_loc = (server->intraCommSize > 1) |
---|
[318] | 1710 | ? StdString("lon").append(appendDomid).append("_local") |
---|
[278] | 1711 | : lonid; |
---|
[300] | 1712 | StdString latid_loc = (server->intraCommSize > 1) |
---|
[318] | 1713 | ? StdString("lat").append(appendDomid).append("_local") |
---|
[278] | 1714 | : latid; |
---|
[391] | 1715 | */ |
---|
[770] | 1716 | StdString fieldid = field->getFieldOutputName(); |
---|
[219] | 1717 | |
---|
[464] | 1718 | nc_type type ; |
---|
| 1719 | if (field->prec.isEmpty()) type = NC_FLOAT ; |
---|
| 1720 | else |
---|
| 1721 | { |
---|
| 1722 | if (field->prec==2) type = NC_SHORT ; |
---|
| 1723 | else if (field->prec==4) type = NC_FLOAT ; |
---|
[488] | 1724 | else if (field->prec==8) type = NC_DOUBLE ; |
---|
[464] | 1725 | } |
---|
[488] | 1726 | |
---|
[645] | 1727 | bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once); |
---|
[488] | 1728 | |
---|
[219] | 1729 | if (wtime) |
---|
| 1730 | { |
---|
[488] | 1731 | |
---|
[449] | 1732 | //StdOStringStream oss; |
---|
| 1733 | // oss << "time_" << field->operation.getValue() |
---|
| 1734 | // << "_" << field->getRelFile()->output_freq.getValue(); |
---|
[488] | 1735 | //oss |
---|
[645] | 1736 | if (field->getOperationTimeType() == func::CFunctor::instant) coodinates.push_back(string("time_instant")); |
---|
| 1737 | else if (field->getOperationTimeType() == func::CFunctor::centered) coodinates.push_back(string("time_centered")); |
---|
[219] | 1738 | dims.push_back(timeid); |
---|
| 1739 | } |
---|
| 1740 | |
---|
[676] | 1741 | if (compressedOutput && grid->isCompressible()) |
---|
[219] | 1742 | { |
---|
[676] | 1743 | dims.push_back(grid->getId() + "_points"); |
---|
| 1744 | field->setUseCompressedOutput(); |
---|
[219] | 1745 | } |
---|
[676] | 1746 | else |
---|
| 1747 | { |
---|
| 1748 | while (!dimIdList.empty()) |
---|
| 1749 | { |
---|
| 1750 | dims.push_back(dimIdList.back()); |
---|
| 1751 | dimIdList.pop_back(); |
---|
| 1752 | } |
---|
| 1753 | } |
---|
[219] | 1754 | |
---|
[567] | 1755 | while (!dimCoordList.empty()) |
---|
[219] | 1756 | { |
---|
[567] | 1757 | coodinates.push_back(dimCoordList.back()); |
---|
| 1758 | dimCoordList.pop_back(); |
---|
[219] | 1759 | } |
---|
| 1760 | |
---|
[498] | 1761 | try |
---|
| 1762 | { |
---|
| 1763 | SuperClassWriter::addVariable(fieldid, type, dims); |
---|
[488] | 1764 | |
---|
[498] | 1765 | if (!field->standard_name.isEmpty()) |
---|
| 1766 | SuperClassWriter::addAttribute |
---|
| 1767 | ("standard_name", field->standard_name.getValue(), &fieldid); |
---|
[219] | 1768 | |
---|
[498] | 1769 | if (!field->long_name.isEmpty()) |
---|
| 1770 | SuperClassWriter::addAttribute |
---|
| 1771 | ("long_name", field->long_name.getValue(), &fieldid); |
---|
[219] | 1772 | |
---|
[498] | 1773 | if (!field->unit.isEmpty()) |
---|
| 1774 | SuperClassWriter::addAttribute |
---|
| 1775 | ("units", field->unit.getValue(), &fieldid); |
---|
[463] | 1776 | |
---|
[498] | 1777 | if (!field->valid_min.isEmpty()) |
---|
| 1778 | SuperClassWriter::addAttribute |
---|
| 1779 | ("valid_min", field->valid_min.getValue(), &fieldid); |
---|
[463] | 1780 | |
---|
[498] | 1781 | if (!field->valid_max.isEmpty()) |
---|
| 1782 | SuperClassWriter::addAttribute |
---|
| 1783 | ("valid_max", field->valid_max.getValue(), &fieldid); |
---|
[464] | 1784 | |
---|
[498] | 1785 | if (!field->scale_factor.isEmpty()) |
---|
| 1786 | SuperClassWriter::addAttribute |
---|
| 1787 | ("scale_factor", field->scale_factor.getValue(), &fieldid); |
---|
[464] | 1788 | |
---|
[498] | 1789 | if (!field->add_offset.isEmpty()) |
---|
| 1790 | SuperClassWriter::addAttribute |
---|
| 1791 | ("add_offset", field->add_offset.getValue(), &fieldid); |
---|
[488] | 1792 | |
---|
[498] | 1793 | SuperClassWriter::addAttribute |
---|
| 1794 | ("online_operation", field->operation.getValue(), &fieldid); |
---|
[472] | 1795 | |
---|
[498] | 1796 | // write child variables as attributes |
---|
[488] | 1797 | |
---|
| 1798 | |
---|
[498] | 1799 | vector<CVariable*> listVars = field->getAllVariables() ; |
---|
| 1800 | for (vector<CVariable*>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(*it, fieldid) ; |
---|
[472] | 1801 | |
---|
[1021] | 1802 | bool alreadyAddCellMethod = false; |
---|
| 1803 | StdString cellMethodsPrefix(""), cellMethodsSuffix(""); |
---|
| 1804 | if (!field->cell_methods.isEmpty()) |
---|
| 1805 | { |
---|
| 1806 | StdString cellMethodString = field->cell_methods; |
---|
| 1807 | if (field->cell_methods_mode.isEmpty() || |
---|
| 1808 | (CField::cell_methods_mode_attr::overwrite == field->cell_methods_mode)) |
---|
| 1809 | { |
---|
| 1810 | SuperClassWriter::addAttribute("cell_methods", cellMethodString, &fieldid); |
---|
| 1811 | alreadyAddCellMethod = true; |
---|
| 1812 | } |
---|
| 1813 | else |
---|
| 1814 | { |
---|
| 1815 | switch (field->cell_methods_mode) |
---|
| 1816 | { |
---|
| 1817 | case (CField::cell_methods_mode_attr::prefix): |
---|
| 1818 | cellMethodsPrefix = cellMethodString; |
---|
| 1819 | cellMethodsPrefix += " "; |
---|
| 1820 | break; |
---|
| 1821 | case (CField::cell_methods_mode_attr::suffix): |
---|
| 1822 | cellMethodsSuffix = " "; |
---|
| 1823 | cellMethodsSuffix += cellMethodString; |
---|
| 1824 | break; |
---|
| 1825 | case (CField::cell_methods_mode_attr::none): |
---|
| 1826 | break; |
---|
| 1827 | default: |
---|
| 1828 | break; |
---|
| 1829 | } |
---|
| 1830 | } |
---|
| 1831 | } |
---|
[488] | 1832 | |
---|
[1021] | 1833 | |
---|
[498] | 1834 | if (wtime) |
---|
| 1835 | { |
---|
[614] | 1836 | CDuration freqOp = field->freq_op.getValue(); |
---|
| 1837 | freqOp.solveTimeStep(*context->calendar); |
---|
| 1838 | StdString freqOpStr = freqOp.toStringUDUnits(); |
---|
[612] | 1839 | SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid); |
---|
[437] | 1840 | |
---|
[614] | 1841 | CDuration freqOut = field->getRelFile()->output_freq.getValue(); |
---|
| 1842 | freqOut.solveTimeStep(*context->calendar); |
---|
| 1843 | SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid); |
---|
[612] | 1844 | |
---|
[1021] | 1845 | StdString cellMethods(cellMethodsPrefix + "time: "); |
---|
[612] | 1846 | if (field->operation.getValue() == "instant") cellMethods += "point"; |
---|
| 1847 | else if (field->operation.getValue() == "average") cellMethods += "mean"; |
---|
| 1848 | else if (field->operation.getValue() == "accumulate") cellMethods += "sum"; |
---|
| 1849 | else cellMethods += field->operation; |
---|
[614] | 1850 | if (freqOp.resolve(*context->calendar) != freqOut.resolve(*context->calendar)) |
---|
| 1851 | cellMethods += " (interval: " + freqOpStr + ")"; |
---|
[1021] | 1852 | cellMethods += cellMethodsSuffix; |
---|
| 1853 | if (!alreadyAddCellMethod) |
---|
| 1854 | SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid); |
---|
[498] | 1855 | } |
---|
[488] | 1856 | |
---|
[611] | 1857 | if (hasArea) |
---|
| 1858 | SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid); |
---|
| 1859 | |
---|
[498] | 1860 | if (!field->default_value.isEmpty()) |
---|
| 1861 | { |
---|
| 1862 | double default_value = field->default_value.getValue(); |
---|
| 1863 | float fdefault_value = (float)default_value; |
---|
| 1864 | if (type == NC_DOUBLE) |
---|
| 1865 | SuperClassWriter::setDefaultValue(fieldid, &default_value); |
---|
| 1866 | else |
---|
| 1867 | SuperClassWriter::setDefaultValue(fieldid, &fdefault_value); |
---|
| 1868 | } |
---|
| 1869 | else |
---|
[517] | 1870 | SuperClassWriter::setDefaultValue(fieldid, (double*)NULL); |
---|
[219] | 1871 | |
---|
[606] | 1872 | if (field->compression_level.isEmpty()) |
---|
| 1873 | field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level; |
---|
| 1874 | SuperClassWriter::setCompressionLevel(fieldid, field->compression_level); |
---|
| 1875 | |
---|
[878] | 1876 | { // Ecriture des coordonnes |
---|
[488] | 1877 | |
---|
[498] | 1878 | StdString coordstr; //boost::algorithm::join(coodinates, " ") |
---|
| 1879 | std::vector<StdString>::iterator |
---|
| 1880 | itc = coodinates.begin(), endc = coodinates.end(); |
---|
[488] | 1881 | |
---|
[498] | 1882 | for (; itc!= endc; itc++) |
---|
| 1883 | { |
---|
| 1884 | StdString & coord = *itc; |
---|
| 1885 | if (itc+1 != endc) |
---|
| 1886 | coordstr.append(coord).append(" "); |
---|
| 1887 | else coordstr.append(coord); |
---|
| 1888 | } |
---|
[219] | 1889 | |
---|
[498] | 1890 | SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid); |
---|
[219] | 1891 | |
---|
[498] | 1892 | } |
---|
[219] | 1893 | } |
---|
[498] | 1894 | catch (CNetCdfException& e) |
---|
| 1895 | { |
---|
| 1896 | StdString msg("On writing field : "); |
---|
| 1897 | msg.append(fieldid); msg.append("\n"); |
---|
| 1898 | msg.append("In the context : "); |
---|
| 1899 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1900 | msg.append(e.what()); |
---|
| 1901 | ERROR("CNc4DataOutput::writeField_(CField* field)", << msg); |
---|
| 1902 | } |
---|
[879] | 1903 | } // writeField_() |
---|
[219] | 1904 | |
---|
| 1905 | //-------------------------------------------------------------- |
---|
| 1906 | |
---|
[347] | 1907 | void CNc4DataOutput::writeFile_ (CFile* file) |
---|
[219] | 1908 | { |
---|
[773] | 1909 | StdString filename = file->getFileOutputName(); |
---|
[219] | 1910 | StdString description = (!file->description.isEmpty()) |
---|
| 1911 | ? file->description.getValue() |
---|
[335] | 1912 | : StdString("Created by xios"); |
---|
[609] | 1913 | |
---|
| 1914 | singleDomain = (file->nbDomains == 1); |
---|
| 1915 | |
---|
[498] | 1916 | try |
---|
| 1917 | { |
---|
[879] | 1918 | if (SuperClassWriter::useCFConvention) |
---|
[878] | 1919 | this->writeFileAttributes(filename, description, |
---|
| 1920 | StdString("CF-1.5"), |
---|
| 1921 | StdString("An IPSL model"), |
---|
| 1922 | this->getTimeStamp()); |
---|
| 1923 | else |
---|
| 1924 | this->writeFileAttributes(filename, description, |
---|
| 1925 | StdString("UGRID"), |
---|
| 1926 | StdString("An IPSL model"), |
---|
| 1927 | this->getTimeStamp()); |
---|
[609] | 1928 | |
---|
[878] | 1929 | |
---|
[701] | 1930 | if (!appendMode) |
---|
| 1931 | SuperClassWriter::addDimension("axis_nbounds", 2); |
---|
[498] | 1932 | } |
---|
| 1933 | catch (CNetCdfException& e) |
---|
| 1934 | { |
---|
| 1935 | StdString msg("On writing file : "); |
---|
| 1936 | msg.append(filename); msg.append("\n"); |
---|
| 1937 | msg.append("In the context : "); |
---|
| 1938 | CContext* context = CContext::getCurrent() ; |
---|
| 1939 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1940 | msg.append(e.what()); |
---|
| 1941 | ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg); |
---|
| 1942 | } |
---|
[219] | 1943 | } |
---|
[488] | 1944 | |
---|
[472] | 1945 | void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId) |
---|
| 1946 | { |
---|
[773] | 1947 | StdString name = var->getVariableOutputName(); |
---|
[488] | 1948 | |
---|
[498] | 1949 | try |
---|
| 1950 | { |
---|
[527] | 1951 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
| 1952 | addAttribute(name, var->getData<int>(), &fieldId); |
---|
| 1953 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
| 1954 | addAttribute(name, var->getData<short int>(), &fieldId); |
---|
| 1955 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
| 1956 | addAttribute(name, var->getData<float>(), &fieldId); |
---|
| 1957 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
| 1958 | addAttribute(name, var->getData<double>(), &fieldId); |
---|
| 1959 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
| 1960 | addAttribute(name, var->getData<string>(), &fieldId); |
---|
| 1961 | else |
---|
| 1962 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", |
---|
| 1963 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
[498] | 1964 | } |
---|
| 1965 | catch (CNetCdfException& e) |
---|
| 1966 | { |
---|
| 1967 | StdString msg("On writing attributes of variable with name : "); |
---|
| 1968 | msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n"); |
---|
| 1969 | msg.append("In the context : "); |
---|
| 1970 | CContext* context = CContext::getCurrent() ; |
---|
| 1971 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1972 | msg.append(e.what()); |
---|
| 1973 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg); |
---|
| 1974 | } |
---|
[472] | 1975 | } |
---|
[488] | 1976 | |
---|
[472] | 1977 | void CNc4DataOutput::writeAttribute_ (CVariable* var) |
---|
| 1978 | { |
---|
[773] | 1979 | StdString name = var->getVariableOutputName(); |
---|
| 1980 | |
---|
[498] | 1981 | try |
---|
| 1982 | { |
---|
[527] | 1983 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
| 1984 | addAttribute(name, var->getData<int>()); |
---|
| 1985 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
| 1986 | addAttribute(name, var->getData<short int>()); |
---|
| 1987 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
| 1988 | addAttribute(name, var->getData<float>()); |
---|
| 1989 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
| 1990 | addAttribute(name, var->getData<double>()); |
---|
| 1991 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
| 1992 | addAttribute(name, var->getData<string>()); |
---|
| 1993 | else |
---|
| 1994 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", |
---|
| 1995 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
[498] | 1996 | } |
---|
| 1997 | catch (CNetCdfException& e) |
---|
| 1998 | { |
---|
| 1999 | StdString msg("On writing attributes of variable with name : "); |
---|
| 2000 | msg.append(name); msg.append("\n"); |
---|
| 2001 | msg.append("In the context : "); |
---|
| 2002 | CContext* context = CContext::getCurrent() ; |
---|
| 2003 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2004 | msg.append(e.what()); |
---|
| 2005 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg); |
---|
| 2006 | } |
---|
[488] | 2007 | } |
---|
| 2008 | |
---|
[321] | 2009 | void CNc4DataOutput::syncFile_ (void) |
---|
| 2010 | { |
---|
[498] | 2011 | try |
---|
| 2012 | { |
---|
| 2013 | SuperClassWriter::sync() ; |
---|
| 2014 | } |
---|
| 2015 | catch (CNetCdfException& e) |
---|
| 2016 | { |
---|
| 2017 | StdString msg("On synchronizing the write among processes"); |
---|
| 2018 | msg.append("In the context : "); |
---|
| 2019 | CContext* context = CContext::getCurrent() ; |
---|
| 2020 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2021 | msg.append(e.what()); |
---|
| 2022 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
| 2023 | } |
---|
[321] | 2024 | } |
---|
[219] | 2025 | |
---|
[286] | 2026 | void CNc4DataOutput::closeFile_ (void) |
---|
| 2027 | { |
---|
[498] | 2028 | try |
---|
| 2029 | { |
---|
| 2030 | SuperClassWriter::close() ; |
---|
| 2031 | } |
---|
| 2032 | catch (CNetCdfException& e) |
---|
| 2033 | { |
---|
| 2034 | StdString msg("On closing file"); |
---|
| 2035 | msg.append("In the context : "); |
---|
| 2036 | CContext* context = CContext::getCurrent() ; |
---|
| 2037 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2038 | msg.append(e.what()); |
---|
| 2039 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
| 2040 | } |
---|
| 2041 | |
---|
[286] | 2042 | } |
---|
| 2043 | |
---|
[219] | 2044 | //--------------------------------------------------------------- |
---|
| 2045 | |
---|
| 2046 | StdString CNc4DataOutput::getTimeStamp(void) const |
---|
| 2047 | { |
---|
| 2048 | const int buffer_size = 100; |
---|
| 2049 | time_t rawtime; |
---|
| 2050 | struct tm * timeinfo = NULL; |
---|
| 2051 | char buffer [buffer_size]; |
---|
| 2052 | |
---|
| 2053 | time ( &rawtime ); |
---|
| 2054 | timeinfo = localtime ( &rawtime ); |
---|
| 2055 | strftime (buffer, buffer_size, "%Y-%b-%d %H:%M:%S %Z", timeinfo); |
---|
| 2056 | |
---|
| 2057 | return (StdString(buffer)); |
---|
| 2058 | } |
---|
[488] | 2059 | |
---|
[219] | 2060 | //--------------------------------------------------------------- |
---|
[488] | 2061 | |
---|
[347] | 2062 | void CNc4DataOutput::writeFieldData_ (CField* field) |
---|
[219] | 2063 | { |
---|
[707] | 2064 | CContext* context = CContext::getCurrent(); |
---|
| 2065 | CContextServer* server = context->server; |
---|
| 2066 | CGrid* grid = field->grid; |
---|
[300] | 2067 | |
---|
[952] | 2068 | if (field->getNStep()<1) return ; |
---|
| 2069 | |
---|
[707] | 2070 | if (!grid->doGridHaveDataToWrite()) |
---|
| 2071 | if (SuperClass::type == MULTI_FILE || !isCollective) return; |
---|
[488] | 2072 | |
---|
[770] | 2073 | StdString fieldid = field->getFieldOutputName(); |
---|
[286] | 2074 | |
---|
[707] | 2075 | StdOStringStream oss; |
---|
| 2076 | string timeAxisId; |
---|
| 2077 | if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisId = "time_instant"; |
---|
| 2078 | else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisId = "time_centered"; |
---|
[488] | 2079 | |
---|
[802] | 2080 | StdString timeBoundId = getTimeCounterName() + "_bounds"; |
---|
[449] | 2081 | |
---|
[707] | 2082 | StdString timeAxisBoundId; |
---|
| 2083 | if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisBoundId = "time_instant_bounds"; |
---|
| 2084 | else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisBoundId = "time_centered_bounds"; |
---|
[488] | 2085 | |
---|
[707] | 2086 | if (!field->wasWritten()) |
---|
| 2087 | { |
---|
[1021] | 2088 | if (appendMode && field->file->record_offset.isEmpty() && |
---|
| 2089 | field->getOperationTimeType() != func::CFunctor::once) |
---|
[707] | 2090 | { |
---|
| 2091 | field->resetNStep(getRecordFromTime(field->last_Write_srv) + 1); |
---|
| 2092 | } |
---|
[488] | 2093 | |
---|
[707] | 2094 | field->setWritten(); |
---|
| 2095 | } |
---|
[488] | 2096 | |
---|
| 2097 | |
---|
[707] | 2098 | CArray<double,1> time_data(1); |
---|
| 2099 | CArray<double,1> time_data_bound(2); |
---|
| 2100 | CArray<double,1> time_counter(1); |
---|
| 2101 | CArray<double,1> time_counter_bound(2); |
---|
| 2102 | |
---|
| 2103 | bool wtime = (field->getOperationTimeType() != func::CFunctor::once); |
---|
| 2104 | |
---|
[444] | 2105 | if (wtime) |
---|
| 2106 | { |
---|
[692] | 2107 | Time lastWrite = field->last_Write_srv; |
---|
| 2108 | Time lastLastWrite = field->lastlast_Write_srv; |
---|
| 2109 | |
---|
[645] | 2110 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[692] | 2111 | time_data(0) = lastWrite; |
---|
| 2112 | else if (field->getOperationTimeType() == func::CFunctor::centered) |
---|
| 2113 | time_data(0) = (lastWrite + lastLastWrite) / 2; |
---|
[488] | 2114 | |
---|
[645] | 2115 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[692] | 2116 | time_data_bound(0) = time_data_bound(1) = lastWrite; |
---|
[645] | 2117 | else if (field->getOperationTimeType() == func::CFunctor::centered) |
---|
[488] | 2118 | { |
---|
[692] | 2119 | time_data_bound(0) = lastLastWrite; |
---|
| 2120 | time_data_bound(1) = lastWrite; |
---|
[488] | 2121 | } |
---|
| 2122 | |
---|
[692] | 2123 | if (field->file->time_counter == CFile::time_counter_attr::instant) |
---|
| 2124 | time_counter(0) = lastWrite; |
---|
| 2125 | else if (field->file->time_counter == CFile::time_counter_attr::centered) |
---|
| 2126 | time_counter(0) = (lastWrite + lastLastWrite) / 2; |
---|
| 2127 | else if (field->file->time_counter == CFile::time_counter_attr::record) |
---|
| 2128 | time_counter(0) = field->getNStep() - 1; |
---|
| 2129 | |
---|
| 2130 | |
---|
| 2131 | if (field->file->time_counter == CFile::time_counter_attr::instant) |
---|
| 2132 | time_counter_bound(0) = time_counter_bound(1) = lastWrite; |
---|
| 2133 | else if (field->file->time_counter == CFile::time_counter_attr::centered) |
---|
| 2134 | { |
---|
| 2135 | time_counter_bound(0) = lastLastWrite; |
---|
| 2136 | time_counter_bound(1) = lastWrite; |
---|
| 2137 | } |
---|
| 2138 | else if (field->file->time_counter == CFile::time_counter_attr::record) |
---|
| 2139 | time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1; |
---|
| 2140 | } |
---|
| 2141 | |
---|
[707] | 2142 | bool isRoot = (server->intraCommRank == 0); |
---|
[488] | 2143 | |
---|
[464] | 2144 | if (!field->scale_factor.isEmpty() || !field->add_offset.isEmpty()) |
---|
| 2145 | { |
---|
[707] | 2146 | double scaleFactor = 1.0; |
---|
| 2147 | double addOffset = 0.0; |
---|
| 2148 | if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor; |
---|
| 2149 | if (!field->add_offset.isEmpty()) addOffset = field->add_offset; |
---|
| 2150 | field->scaleFactorAddOffset(scaleFactor, addOffset); |
---|
[464] | 2151 | } |
---|
[488] | 2152 | |
---|
[498] | 2153 | try |
---|
[219] | 2154 | { |
---|
[676] | 2155 | size_t writtenSize; |
---|
| 2156 | if (field->getUseCompressedOutput()) |
---|
| 2157 | writtenSize = grid->getNumberWrittenIndexes(); |
---|
| 2158 | else |
---|
| 2159 | writtenSize = grid->getWrittenDataSize(); |
---|
| 2160 | |
---|
| 2161 | CArray<double,1> fieldData(writtenSize); |
---|
[567] | 2162 | if (!field->default_value.isEmpty()) fieldData = field->default_value; |
---|
[676] | 2163 | |
---|
| 2164 | if (field->getUseCompressedOutput()) |
---|
| 2165 | field->outputCompressedField(fieldData); |
---|
| 2166 | else |
---|
| 2167 | field->outputField(fieldData); |
---|
| 2168 | |
---|
[707] | 2169 | if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData); |
---|
[567] | 2170 | |
---|
| 2171 | switch (SuperClass::type) |
---|
[498] | 2172 | { |
---|
[567] | 2173 | case (MULTI_FILE) : |
---|
| 2174 | { |
---|
[692] | 2175 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1); |
---|
[567] | 2176 | if (wtime) |
---|
| 2177 | { |
---|
[692] | 2178 | SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1); |
---|
| 2179 | SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1); |
---|
| 2180 | if (field->file->time_counter != CFile::time_counter_attr::none) |
---|
| 2181 | { |
---|
[802] | 2182 | SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1); |
---|
[692] | 2183 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
| 2184 | SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1); |
---|
| 2185 | } |
---|
[567] | 2186 | } |
---|
[707] | 2187 | break; |
---|
[567] | 2188 | } |
---|
| 2189 | case (ONE_FILE) : |
---|
| 2190 | { |
---|
[1025] | 2191 | // const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal(); |
---|
| 2192 | // const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer(); |
---|
| 2193 | // const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer(); |
---|
| 2194 | |
---|
| 2195 | // std::vector<StdSize> start, count; |
---|
| 2196 | |
---|
| 2197 | // if (field->getUseCompressedOutput()) |
---|
| 2198 | // { |
---|
| 2199 | // if (grid->isCompressible()) |
---|
| 2200 | // { |
---|
| 2201 | // start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 2202 | // count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 2203 | // } |
---|
| 2204 | // else |
---|
| 2205 | // { |
---|
| 2206 | // CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
| 2207 | // std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 2208 | // std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 2209 | // int numElement = axisDomainOrder.numElements(); |
---|
| 2210 | // int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
| 2211 | // int idx = nZoomBeginGlobal.size() - 1; |
---|
| 2212 | |
---|
| 2213 | // start.reserve(nZoomBeginGlobal.size()); |
---|
| 2214 | // count.reserve(nZoomBeginGlobal.size()); |
---|
| 2215 | |
---|
| 2216 | |
---|
| 2217 | // for (int i = numElement - 1; i >= 0; --i) |
---|
| 2218 | // { |
---|
| 2219 | // if (2 == axisDomainOrder(i)) |
---|
| 2220 | // { |
---|
| 2221 | // CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
| 2222 | |
---|
| 2223 | // if (domain->isCompressible()) |
---|
| 2224 | // { |
---|
| 2225 | // start.push_back(domain->getOffsetWrittenIndexes()); |
---|
| 2226 | // count.push_back(domain->getNumberWrittenIndexes()); |
---|
| 2227 | // idx -= 2; |
---|
| 2228 | // } |
---|
| 2229 | // else |
---|
| 2230 | // { |
---|
| 2231 | // if ((domain->type) != CDomain::type_attr::unstructured) |
---|
| 2232 | // { |
---|
| 2233 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2234 | // count.push_back(nZoomSizeServer[idx]); |
---|
| 2235 | // } |
---|
| 2236 | // --idx; |
---|
| 2237 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2238 | // count.push_back(nZoomSizeServer[idx]); |
---|
| 2239 | // --idx; |
---|
| 2240 | // } |
---|
| 2241 | // --idxDomain; |
---|
| 2242 | // } |
---|
| 2243 | // else if (1 == axisDomainOrder(i)) |
---|
| 2244 | // { |
---|
| 2245 | // CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
| 2246 | |
---|
| 2247 | // if (axis->isCompressible()) |
---|
| 2248 | // { |
---|
| 2249 | // start.push_back(axis->getOffsetWrittenIndexes()); |
---|
| 2250 | // count.push_back(axis->getNumberWrittenIndexes()); |
---|
| 2251 | // } |
---|
| 2252 | // else |
---|
| 2253 | // { |
---|
| 2254 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2255 | // count.push_back(nZoomSizeServer[idx]); |
---|
| 2256 | // } |
---|
| 2257 | |
---|
| 2258 | // --idxAxis; |
---|
| 2259 | // --idx; |
---|
| 2260 | // } |
---|
| 2261 | // } |
---|
| 2262 | // } |
---|
[676] | 2263 | const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal(); |
---|
| 2264 | const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer(); |
---|
| 2265 | const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer(); |
---|
[464] | 2266 | |
---|
[676] | 2267 | std::vector<StdSize> start, count; |
---|
[464] | 2268 | |
---|
[676] | 2269 | if (field->getUseCompressedOutput()) |
---|
| 2270 | { |
---|
| 2271 | if (grid->isCompressible()) |
---|
| 2272 | { |
---|
| 2273 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 2274 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 2275 | } |
---|
| 2276 | else |
---|
| 2277 | { |
---|
[887] | 2278 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[676] | 2279 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 2280 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 2281 | int numElement = axisDomainOrder.numElements(); |
---|
| 2282 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
| 2283 | int idx = nZoomBeginGlobal.size() - 1; |
---|
[464] | 2284 | |
---|
[676] | 2285 | start.reserve(nZoomBeginGlobal.size()); |
---|
| 2286 | count.reserve(nZoomBeginGlobal.size()); |
---|
| 2287 | |
---|
| 2288 | |
---|
| 2289 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 2290 | { |
---|
[887] | 2291 | if (2 == axisDomainOrder(i)) |
---|
[676] | 2292 | { |
---|
| 2293 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
| 2294 | |
---|
| 2295 | if (domain->isCompressible()) |
---|
| 2296 | { |
---|
| 2297 | start.push_back(domain->getOffsetWrittenIndexes()); |
---|
| 2298 | count.push_back(domain->getNumberWrittenIndexes()); |
---|
[710] | 2299 | idx -= 2; |
---|
[676] | 2300 | } |
---|
| 2301 | else |
---|
| 2302 | { |
---|
[710] | 2303 | if ((domain->type) != CDomain::type_attr::unstructured) |
---|
| 2304 | { |
---|
| 2305 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2306 | count.push_back(nZoomSizeServer[idx]); |
---|
| 2307 | } |
---|
| 2308 | --idx; |
---|
[676] | 2309 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2310 | count.push_back(nZoomSizeServer[idx]); |
---|
[710] | 2311 | --idx; |
---|
[676] | 2312 | } |
---|
| 2313 | --idxDomain; |
---|
| 2314 | } |
---|
[887] | 2315 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 2316 | { |
---|
| 2317 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
| 2318 | |
---|
| 2319 | if (axis->isCompressible()) |
---|
| 2320 | { |
---|
| 2321 | start.push_back(axis->getOffsetWrittenIndexes()); |
---|
| 2322 | count.push_back(axis->getNumberWrittenIndexes()); |
---|
| 2323 | } |
---|
| 2324 | else |
---|
| 2325 | { |
---|
| 2326 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2327 | count.push_back(nZoomSizeServer[idx]); |
---|
| 2328 | } |
---|
| 2329 | |
---|
| 2330 | --idxAxis; |
---|
| 2331 | --idx; |
---|
| 2332 | } |
---|
| 2333 | } |
---|
[1025] | 2334 | } |
---|
[676] | 2335 | } |
---|
| 2336 | else |
---|
[498] | 2337 | { |
---|
[1025] | 2338 | // CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
| 2339 | // std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 2340 | // std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 2341 | // int numElement = axisDomainOrder.numElements(); |
---|
| 2342 | // int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
| 2343 | // int idx = nZoomBeginGlobal.size() - 1; |
---|
[705] | 2344 | |
---|
[1025] | 2345 | // start.reserve(nZoomBeginGlobal.size()); |
---|
| 2346 | // count.reserve(nZoomBeginGlobal.size()); |
---|
| 2347 | |
---|
| 2348 | // for (int i = numElement - 1; i >= 0; --i) |
---|
| 2349 | // { |
---|
| 2350 | // if (2 == axisDomainOrder(i)) |
---|
| 2351 | // { |
---|
| 2352 | // CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
| 2353 | // if ((domain->type) != CDomain::type_attr::unstructured) |
---|
| 2354 | // { |
---|
| 2355 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2356 | // count.push_back(nZoomSizeServer[idx]); |
---|
| 2357 | // } |
---|
| 2358 | // --idx ; |
---|
| 2359 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2360 | // count.push_back(nZoomSizeServer[idx]); |
---|
| 2361 | // --idx ; |
---|
| 2362 | // --idxDomain; |
---|
| 2363 | // } |
---|
| 2364 | // else if (1 == axisDomainOrder(i)) |
---|
| 2365 | // { |
---|
| 2366 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2367 | // count.push_back(nZoomSizeServer[idx]); |
---|
| 2368 | // --idx; |
---|
| 2369 | // } |
---|
| 2370 | // else |
---|
| 2371 | // { |
---|
| 2372 | // if (1 == axisDomainOrder.numElements()) |
---|
| 2373 | // { |
---|
| 2374 | // start.push_back(0); |
---|
| 2375 | // count.push_back(1); |
---|
| 2376 | // } |
---|
| 2377 | // --idx; |
---|
| 2378 | // } |
---|
[887] | 2379 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[705] | 2380 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 2381 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 2382 | int numElement = axisDomainOrder.numElements(); |
---|
| 2383 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
[1025] | 2384 | int idx = domainList.size() * 2 + axisList.size() - 1;// nZoomBeginGlobal.size() - 1; |
---|
[705] | 2385 | |
---|
| 2386 | start.reserve(nZoomBeginGlobal.size()); |
---|
| 2387 | count.reserve(nZoomBeginGlobal.size()); |
---|
| 2388 | |
---|
| 2389 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 2390 | { |
---|
[887] | 2391 | if (2 == axisDomainOrder(i)) |
---|
[705] | 2392 | { |
---|
| 2393 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[710] | 2394 | if ((domain->type) != CDomain::type_attr::unstructured) |
---|
[705] | 2395 | { |
---|
[1025] | 2396 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2397 | // count.push_back(nZoomSizeServer[idx]); |
---|
[1099] | 2398 | // start.push_back((domain->getStartWriteIndex())[idx]); |
---|
| 2399 | // count.push_back((domain->getCountWriteIndex())[idx]); |
---|
| 2400 | start.push_back(domain->zoom_jbegin - domain->global_zoom_jbegin); |
---|
| 2401 | count.push_back(domain->zoom_nj); |
---|
[705] | 2402 | } |
---|
| 2403 | --idx ; |
---|
[1025] | 2404 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2405 | // count.push_back(nZoomSizeServer[idx]); |
---|
[1099] | 2406 | // start.push_back((domain->getStartWriteIndex())[idx]); |
---|
| 2407 | // count.push_back((domain->getCountWriteIndex())[idx]); |
---|
| 2408 | start.push_back(domain->zoom_ibegin - domain->global_zoom_ibegin); |
---|
| 2409 | count.push_back(domain->zoom_ni); |
---|
[705] | 2410 | --idx ; |
---|
| 2411 | --idxDomain; |
---|
| 2412 | } |
---|
[887] | 2413 | else if (1 == axisDomainOrder(i)) |
---|
[705] | 2414 | { |
---|
[1025] | 2415 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
[1099] | 2416 | // start.push_back(axis->getStartWriteIndex()); |
---|
| 2417 | // count.push_back(axis->getCountWriteIndex()); |
---|
| 2418 | start.push_back(axis->zoom_begin - axis->global_zoom_begin); |
---|
| 2419 | count.push_back(axis->zoom_n); |
---|
[705] | 2420 | --idx; |
---|
[1025] | 2421 | --idxAxis; |
---|
[887] | 2422 | } |
---|
| 2423 | else |
---|
| 2424 | { |
---|
| 2425 | if (1 == axisDomainOrder.numElements()) |
---|
| 2426 | { |
---|
| 2427 | start.push_back(0); |
---|
| 2428 | count.push_back(1); |
---|
| 2429 | } |
---|
| 2430 | --idx; |
---|
| 2431 | } |
---|
[705] | 2432 | } |
---|
[498] | 2433 | } |
---|
[488] | 2434 | |
---|
[676] | 2435 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count); |
---|
[586] | 2436 | if (wtime) |
---|
| 2437 | { |
---|
[692] | 2438 | SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 2439 | SuperClassWriter::writeTimeAxisData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 2440 | if (field->file->time_counter != CFile::time_counter_attr::none) |
---|
| 2441 | { |
---|
[802] | 2442 | SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1, isRoot); |
---|
[692] | 2443 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
| 2444 | SuperClassWriter::writeTimeAxisData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 2445 | } |
---|
[586] | 2446 | } |
---|
| 2447 | |
---|
| 2448 | break; |
---|
[286] | 2449 | } |
---|
[567] | 2450 | } |
---|
[219] | 2451 | } |
---|
[498] | 2452 | catch (CNetCdfException& e) |
---|
| 2453 | { |
---|
| 2454 | StdString msg("On writing field data: "); |
---|
| 2455 | msg.append(fieldid); msg.append("\n"); |
---|
| 2456 | msg.append("In the context : "); |
---|
| 2457 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2458 | msg.append(e.what()); |
---|
[1130] | 2459 | ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg); |
---|
[498] | 2460 | } |
---|
[219] | 2461 | } |
---|
| 2462 | |
---|
| 2463 | //--------------------------------------------------------------- |
---|
| 2464 | |
---|
| 2465 | void CNc4DataOutput::writeTimeAxis_ |
---|
[347] | 2466 | (CField* field, |
---|
[343] | 2467 | const boost::shared_ptr<CCalendar> cal) |
---|
[219] | 2468 | { |
---|
| 2469 | StdOStringStream oss; |
---|
[488] | 2470 | |
---|
[645] | 2471 | if (field->getOperationTimeType() == func::CFunctor::once) return ; |
---|
[488] | 2472 | |
---|
[449] | 2473 | // oss << "time_" << field->operation.getValue() |
---|
| 2474 | // << "_" << field->getRelFile()->output_freq.getValue(); |
---|
[488] | 2475 | |
---|
[449] | 2476 | // StdString axisid = oss.str(); |
---|
[645] | 2477 | // if (field->getOperationTimeType() == func::CFunctor::centered) axisid="time_centered" ; |
---|
| 2478 | // else if (field->getOperationTimeType() == func::CFunctor::instant) axisid="time_instant" ; |
---|
[219] | 2479 | |
---|
[488] | 2480 | StdString axisid("time_centered") ; |
---|
| 2481 | StdString axisBoundId("time_centered_bounds"); |
---|
[802] | 2482 | StdString timeid(getTimeCounterName()); |
---|
[614] | 2483 | StdString timeBoundId("axis_nbounds"); |
---|
[488] | 2484 | |
---|
[645] | 2485 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[488] | 2486 | { |
---|
| 2487 | axisid = "time_instant"; |
---|
| 2488 | axisBoundId = "time_instant_bounds"; |
---|
| 2489 | } |
---|
| 2490 | |
---|
[498] | 2491 | try |
---|
[219] | 2492 | { |
---|
[498] | 2493 | // Adding time_instant or time_centered |
---|
| 2494 | std::vector<StdString> dims; |
---|
| 2495 | dims.push_back(timeid); |
---|
| 2496 | if (!SuperClassWriter::varExist(axisid)) |
---|
| 2497 | { |
---|
| 2498 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
[488] | 2499 | |
---|
[498] | 2500 | CDate timeOrigin=cal->getTimeOrigin() ; |
---|
| 2501 | StdOStringStream oss2; |
---|
| 2502 | // oss2<<initDate.getYear()<<"-"<<initDate.getMonth()<<"-"<<initDate.getDay()<<" " |
---|
| 2503 | // <<initDate.getHour()<<"-"<<initDate.getMinute()<<"-"<<initDate.getSecond() ; |
---|
| 2504 | StdString strInitdate=oss2.str() ; |
---|
| 2505 | StdString strTimeOrigin=timeOrigin.toString() ; |
---|
| 2506 | this->writeTimeAxisAttributes |
---|
| 2507 | (axisid, cal->getType(), |
---|
| 2508 | StdString("seconds since ").append(strTimeOrigin), |
---|
| 2509 | strTimeOrigin, axisBoundId); |
---|
| 2510 | } |
---|
[219] | 2511 | |
---|
[498] | 2512 | // Adding time_instant_bounds or time_centered_bounds variables |
---|
| 2513 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
| 2514 | { |
---|
| 2515 | dims.clear() ; |
---|
| 2516 | dims.push_back(timeid); |
---|
| 2517 | dims.push_back(timeBoundId); |
---|
| 2518 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
| 2519 | } |
---|
[488] | 2520 | |
---|
[692] | 2521 | if (field->file->time_counter != CFile::time_counter_attr::none) |
---|
[498] | 2522 | { |
---|
[692] | 2523 | // Adding time_counter |
---|
[802] | 2524 | axisid = getTimeCounterName(); |
---|
| 2525 | axisBoundId = getTimeCounterName() + "_bounds"; |
---|
[692] | 2526 | dims.clear(); |
---|
| 2527 | dims.push_back(timeid); |
---|
| 2528 | if (!SuperClassWriter::varExist(axisid)) |
---|
| 2529 | { |
---|
| 2530 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
| 2531 | SuperClassWriter::addAttribute("axis", string("T"), &axisid); |
---|
[488] | 2532 | |
---|
[692] | 2533 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
| 2534 | { |
---|
| 2535 | CDate timeOrigin = cal->getTimeOrigin(); |
---|
| 2536 | StdString strTimeOrigin = timeOrigin.toString(); |
---|
[498] | 2537 | |
---|
[692] | 2538 | this->writeTimeAxisAttributes(axisid, cal->getType(), |
---|
| 2539 | StdString("seconds since ").append(strTimeOrigin), |
---|
| 2540 | strTimeOrigin, axisBoundId); |
---|
| 2541 | } |
---|
| 2542 | } |
---|
| 2543 | |
---|
| 2544 | // Adding time_counter_bound dimension |
---|
| 2545 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
| 2546 | { |
---|
| 2547 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
| 2548 | { |
---|
| 2549 | dims.clear(); |
---|
| 2550 | dims.push_back(timeid); |
---|
| 2551 | dims.push_back(timeBoundId); |
---|
| 2552 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
| 2553 | } |
---|
| 2554 | } |
---|
[498] | 2555 | } |
---|
[488] | 2556 | } |
---|
[498] | 2557 | catch (CNetCdfException& e) |
---|
[488] | 2558 | { |
---|
[498] | 2559 | StdString msg("On writing time axis data: "); |
---|
| 2560 | msg.append("In the context : "); |
---|
| 2561 | CContext* context = CContext::getCurrent() ; |
---|
| 2562 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2563 | msg.append(e.what()); |
---|
| 2564 | ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \ |
---|
| 2565 | const boost::shared_ptr<CCalendar> cal)", << msg); |
---|
[488] | 2566 | } |
---|
[219] | 2567 | } |
---|
| 2568 | |
---|
| 2569 | //--------------------------------------------------------------- |
---|
[488] | 2570 | |
---|
[219] | 2571 | void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, |
---|
| 2572 | const StdString & calendar, |
---|
| 2573 | const StdString & units, |
---|
| 2574 | const StdString & time_origin, |
---|
[488] | 2575 | const StdString & time_bounds, |
---|
[219] | 2576 | const StdString & standard_name, |
---|
[613] | 2577 | const StdString & long_name) |
---|
[219] | 2578 | { |
---|
[498] | 2579 | try |
---|
| 2580 | { |
---|
| 2581 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 2582 | SuperClassWriter::addAttribute("long_name", long_name , &axis_name); |
---|
| 2583 | SuperClassWriter::addAttribute("calendar", calendar , &axis_name); |
---|
| 2584 | SuperClassWriter::addAttribute("units", units , &axis_name); |
---|
| 2585 | SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name); |
---|
| 2586 | SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name); |
---|
| 2587 | } |
---|
| 2588 | catch (CNetCdfException& e) |
---|
| 2589 | { |
---|
| 2590 | StdString msg("On writing time axis Attribute: "); |
---|
| 2591 | msg.append("In the context : "); |
---|
| 2592 | CContext* context = CContext::getCurrent() ; |
---|
| 2593 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2594 | msg.append(e.what()); |
---|
| 2595 | ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \ |
---|
[613] | 2596 | const StdString & calendar,\ |
---|
| 2597 | const StdString & units, \ |
---|
| 2598 | const StdString & time_origin, \ |
---|
| 2599 | const StdString & time_bounds, \ |
---|
| 2600 | const StdString & standard_name, \ |
---|
| 2601 | const StdString & long_name)", << msg); |
---|
[498] | 2602 | } |
---|
[219] | 2603 | } |
---|
[488] | 2604 | |
---|
[219] | 2605 | //--------------------------------------------------------------- |
---|
| 2606 | |
---|
| 2607 | void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, |
---|
| 2608 | const StdString & axis, |
---|
| 2609 | const StdString & standard_name, |
---|
| 2610 | const StdString & long_name, |
---|
| 2611 | const StdString & units, |
---|
| 2612 | const StdString & nav_model) |
---|
| 2613 | { |
---|
[498] | 2614 | try |
---|
| 2615 | { |
---|
[613] | 2616 | if (!axis.empty()) |
---|
| 2617 | SuperClassWriter::addAttribute("axis" , axis , &axis_name); |
---|
| 2618 | |
---|
[498] | 2619 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 2620 | SuperClassWriter::addAttribute("long_name" , long_name , &axis_name); |
---|
| 2621 | SuperClassWriter::addAttribute("units" , units , &axis_name); |
---|
[973] | 2622 | // SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name); |
---|
[498] | 2623 | } |
---|
| 2624 | catch (CNetCdfException& e) |
---|
| 2625 | { |
---|
| 2626 | StdString msg("On writing Axis Attribute: "); |
---|
| 2627 | msg.append("In the context : "); |
---|
| 2628 | CContext* context = CContext::getCurrent() ; |
---|
| 2629 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2630 | msg.append(e.what()); |
---|
| 2631 | ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \ |
---|
[613] | 2632 | const StdString & axis, \ |
---|
| 2633 | const StdString & standard_name, \ |
---|
| 2634 | const StdString & long_name, \ |
---|
| 2635 | const StdString & units, \ |
---|
| 2636 | const StdString & nav_model)", << msg); |
---|
[498] | 2637 | } |
---|
[219] | 2638 | } |
---|
| 2639 | |
---|
| 2640 | //--------------------------------------------------------------- |
---|
[488] | 2641 | |
---|
[219] | 2642 | void CNc4DataOutput::writeLocalAttributes |
---|
| 2643 | (int ibegin, int ni, int jbegin, int nj, StdString domid) |
---|
| 2644 | { |
---|
[498] | 2645 | try |
---|
| 2646 | { |
---|
[318] | 2647 | SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin); |
---|
| 2648 | SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni); |
---|
| 2649 | SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin); |
---|
| 2650 | SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj); |
---|
[498] | 2651 | } |
---|
| 2652 | catch (CNetCdfException& e) |
---|
| 2653 | { |
---|
| 2654 | StdString msg("On writing Local Attributes: "); |
---|
| 2655 | msg.append("In the context : "); |
---|
| 2656 | CContext* context = CContext::getCurrent() ; |
---|
| 2657 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2658 | msg.append(e.what()); |
---|
| 2659 | ERROR("CNc4DataOutput::writeLocalAttributes \ |
---|
| 2660 | (int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg); |
---|
| 2661 | } |
---|
| 2662 | |
---|
[219] | 2663 | } |
---|
| 2664 | |
---|
[628] | 2665 | void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid, |
---|
| 2666 | int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size) |
---|
[391] | 2667 | { |
---|
| 2668 | CArray<int,1> array(2) ; |
---|
| 2669 | |
---|
[498] | 2670 | try |
---|
| 2671 | { |
---|
| 2672 | SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ; |
---|
| 2673 | SuperClassWriter::addAttribute("DOMAIN_number", rank) ; |
---|
[629] | 2674 | array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1; |
---|
[498] | 2675 | SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ; |
---|
| 2676 | array=ni_glo,nj_glo ; |
---|
| 2677 | SuperClassWriter::addAttribute("DOMAIN_size_global", array) ; |
---|
| 2678 | array=ni,nj ; |
---|
| 2679 | SuperClassWriter::addAttribute("DOMAIN_size_local", array) ; |
---|
[819] | 2680 | array=ibegin+1,jbegin+1 ; |
---|
[498] | 2681 | SuperClassWriter::addAttribute("DOMAIN_position_first", array) ; |
---|
[819] | 2682 | array=ibegin+ni-1+1,jbegin+nj-1+1 ; |
---|
[498] | 2683 | SuperClassWriter::addAttribute("DOMAIN_position_last",array) ; |
---|
| 2684 | array=0,0 ; |
---|
| 2685 | SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ; |
---|
| 2686 | SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array); |
---|
| 2687 | SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ; |
---|
| 2688 | /* |
---|
| 2689 | SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ; |
---|
| 2690 | SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ; |
---|
| 2691 | SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ; |
---|
| 2692 | SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ; |
---|
| 2693 | */ |
---|
| 2694 | } |
---|
| 2695 | catch (CNetCdfException& e) |
---|
| 2696 | { |
---|
[628] | 2697 | StdString msg("On writing Local Attributes IOIPSL \n"); |
---|
[498] | 2698 | msg.append("In the context : "); |
---|
| 2699 | CContext* context = CContext::getCurrent() ; |
---|
| 2700 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2701 | msg.append(e.what()); |
---|
| 2702 | ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \ |
---|
| 2703 | (int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg); |
---|
| 2704 | } |
---|
[391] | 2705 | } |
---|
[219] | 2706 | //--------------------------------------------------------------- |
---|
| 2707 | |
---|
| 2708 | void CNc4DataOutput:: writeFileAttributes(const StdString & name, |
---|
| 2709 | const StdString & description, |
---|
| 2710 | const StdString & conventions, |
---|
| 2711 | const StdString & production, |
---|
| 2712 | const StdString & timeStamp) |
---|
| 2713 | { |
---|
[498] | 2714 | try |
---|
| 2715 | { |
---|
| 2716 | SuperClassWriter::addAttribute("name" , name); |
---|
| 2717 | SuperClassWriter::addAttribute("description", description); |
---|
[613] | 2718 | SuperClassWriter::addAttribute("title" , description); |
---|
| 2719 | SuperClassWriter::addAttribute("Conventions", conventions); |
---|
[498] | 2720 | SuperClassWriter::addAttribute("production" , production); |
---|
| 2721 | SuperClassWriter::addAttribute("timeStamp" , timeStamp); |
---|
| 2722 | } |
---|
| 2723 | catch (CNetCdfException& e) |
---|
| 2724 | { |
---|
| 2725 | StdString msg("On writing File Attributes \n "); |
---|
| 2726 | msg.append("In the context : "); |
---|
| 2727 | CContext* context = CContext::getCurrent() ; |
---|
| 2728 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2729 | msg.append(e.what()); |
---|
| 2730 | ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \ |
---|
| 2731 | const StdString & description, \ |
---|
| 2732 | const StdString & conventions, \ |
---|
| 2733 | const StdString & production, \ |
---|
| 2734 | const StdString & timeStamp)", << msg); |
---|
| 2735 | } |
---|
[219] | 2736 | } |
---|
| 2737 | |
---|
| 2738 | //--------------------------------------------------------------- |
---|
| 2739 | |
---|
| 2740 | void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, |
---|
| 2741 | int data_dim, |
---|
| 2742 | int data_ni, |
---|
| 2743 | int data_nj, |
---|
| 2744 | int data_ibegin, |
---|
| 2745 | int data_jbegin) |
---|
| 2746 | { |
---|
[498] | 2747 | try |
---|
| 2748 | { |
---|
| 2749 | SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name); |
---|
| 2750 | SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name); |
---|
| 2751 | SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name); |
---|
| 2752 | SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name); |
---|
| 2753 | SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name); |
---|
| 2754 | } |
---|
| 2755 | catch (CNetCdfException& e) |
---|
| 2756 | { |
---|
| 2757 | StdString msg("On writing Mask Attributes \n "); |
---|
| 2758 | msg.append("In the context : "); |
---|
| 2759 | CContext* context = CContext::getCurrent() ; |
---|
| 2760 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2761 | msg.append(e.what()); |
---|
| 2762 | ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \ |
---|
| 2763 | int data_dim, \ |
---|
| 2764 | int data_ni, \ |
---|
| 2765 | int data_nj, \ |
---|
| 2766 | int data_ibegin, \ |
---|
| 2767 | int data_jbegin)", << msg); |
---|
| 2768 | } |
---|
[219] | 2769 | } |
---|
| 2770 | |
---|
| 2771 | ///-------------------------------------------------------------- |
---|
| 2772 | |
---|
[707] | 2773 | StdSize CNc4DataOutput::getRecordFromTime(Time time) |
---|
| 2774 | { |
---|
| 2775 | std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time); |
---|
| 2776 | if (it == timeToRecordCache.end()) |
---|
| 2777 | { |
---|
[802] | 2778 | StdString timeAxisBoundsId(getTimeCounterName() + "_bounds"); |
---|
[707] | 2779 | if (!SuperClassWriter::varExist(timeAxisBoundsId)) |
---|
| 2780 | timeAxisBoundsId = "time_instant_bounds"; |
---|
| 2781 | |
---|
| 2782 | CArray<double,2> timeAxisBounds; |
---|
| 2783 | SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective); |
---|
| 2784 | |
---|
| 2785 | StdSize record = 0; |
---|
| 2786 | double dtime(time); |
---|
| 2787 | for (int n = timeAxisBounds.extent(1) - 1; n >= 0; n--) |
---|
| 2788 | { |
---|
| 2789 | if (timeAxisBounds(1, n) < dtime) |
---|
| 2790 | { |
---|
| 2791 | record = n + 1; |
---|
| 2792 | break; |
---|
| 2793 | } |
---|
| 2794 | } |
---|
| 2795 | it = timeToRecordCache.insert(std::make_pair(time, record)).first; |
---|
| 2796 | } |
---|
| 2797 | return it->second; |
---|
| 2798 | } |
---|
[774] | 2799 | |
---|
| 2800 | ///-------------------------------------------------------------- |
---|
| 2801 | |
---|
| 2802 | bool CNc4DataOutput::isWrittenDomain(const std::string& domainName) const |
---|
| 2803 | { |
---|
| 2804 | return (this->writtenDomains.find(domainName) != this->writtenDomains.end()); |
---|
| 2805 | } |
---|
| 2806 | |
---|
| 2807 | bool CNc4DataOutput::isWrittenCompressedDomain(const std::string& domainName) const |
---|
| 2808 | { |
---|
| 2809 | return (this->writtenCompressedDomains.find(domainName) != this->writtenCompressedDomains.end()); |
---|
| 2810 | } |
---|
| 2811 | |
---|
| 2812 | bool CNc4DataOutput::isWrittenAxis(const std::string& axisName) const |
---|
| 2813 | { |
---|
| 2814 | return (this->writtenAxis.find(axisName) != this->writtenAxis.end()); |
---|
| 2815 | } |
---|
| 2816 | |
---|
| 2817 | bool CNc4DataOutput::isWrittenCompressedAxis(const std::string& axisName) const |
---|
| 2818 | { |
---|
| 2819 | return (this->writtenCompressedAxis.find(axisName) != this->writtenCompressedAxis.end()); |
---|
| 2820 | } |
---|
| 2821 | |
---|
[887] | 2822 | bool CNc4DataOutput::isWrittenScalar(const std::string& scalarName) const |
---|
| 2823 | { |
---|
| 2824 | return (this->writtenScalar.find(scalarName) != this->writtenScalar.end()); |
---|
| 2825 | } |
---|
| 2826 | |
---|
[774] | 2827 | void CNc4DataOutput::setWrittenDomain(const std::string& domainName) |
---|
| 2828 | { |
---|
| 2829 | this->writtenDomains.insert(domainName); |
---|
| 2830 | } |
---|
| 2831 | |
---|
| 2832 | void CNc4DataOutput::setWrittenCompressedDomain(const std::string& domainName) |
---|
| 2833 | { |
---|
| 2834 | this->writtenCompressedDomains.insert(domainName); |
---|
| 2835 | } |
---|
| 2836 | |
---|
| 2837 | void CNc4DataOutput::setWrittenAxis(const std::string& axisName) |
---|
| 2838 | { |
---|
| 2839 | this->writtenAxis.insert(axisName); |
---|
| 2840 | } |
---|
| 2841 | |
---|
| 2842 | void CNc4DataOutput::setWrittenCompressedAxis(const std::string& axisName) |
---|
| 2843 | { |
---|
| 2844 | this->writtenCompressedAxis.insert(axisName); |
---|
| 2845 | } |
---|
[887] | 2846 | |
---|
| 2847 | void CNc4DataOutput::setWrittenScalar(const std::string& scalarName) |
---|
| 2848 | { |
---|
| 2849 | this->writtenScalar.insert(scalarName); |
---|
| 2850 | } |
---|
[335] | 2851 | } // namespace xios |
---|