[219] | 1 | #include "nc4_data_output.hpp" |
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| 2 | |
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| 3 | #include <boost/lexical_cast.hpp> |
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[352] | 4 | #include "attribute_template.hpp" |
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| 5 | #include "group_template.hpp" |
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[219] | 6 | |
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| 7 | #include "file.hpp" |
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| 8 | #include "calendar.hpp" |
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[278] | 9 | #include "context.hpp" |
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[300] | 10 | #include "context_server.hpp" |
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[498] | 11 | #include "netCdfException.hpp" |
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| 12 | #include "exception.hpp" |
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[219] | 13 | |
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[335] | 14 | namespace xios |
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[219] | 15 | { |
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[878] | 16 | /// ////////////////////// Dfinitions ////////////////////// /// |
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[219] | 17 | CNc4DataOutput::CNc4DataOutput |
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| 18 | (const StdString & filename, bool exist) |
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| 19 | : SuperClass() |
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| 20 | , SuperClassWriter(filename, exist) |
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| 21 | , filename(filename) |
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| 22 | { |
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[879] | 23 | SuperClass::type = MULTI_FILE; |
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[219] | 24 | } |
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| 25 | |
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| 26 | CNc4DataOutput::CNc4DataOutput |
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[878] | 27 | (const StdString & filename, bool exist, bool useClassicFormat, bool useCFConvention, |
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[924] | 28 | MPI_Comm comm_file, bool multifile, bool isCollective, const StdString& timeCounterName) |
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[219] | 29 | : SuperClass() |
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[878] | 30 | , SuperClassWriter(filename, exist, useClassicFormat, useCFConvention, &comm_file, multifile, timeCounterName) |
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[379] | 31 | , comm_file(comm_file) |
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[219] | 32 | , filename(filename) |
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[335] | 33 | , isCollective(isCollective) |
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[219] | 34 | { |
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[879] | 35 | SuperClass::type = (multifile) ? MULTI_FILE : ONE_FILE; |
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[219] | 36 | } |
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| 37 | |
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| 38 | CNc4DataOutput::~CNc4DataOutput(void) |
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[879] | 39 | { /* Ne rien faire de plus */ } |
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[219] | 40 | |
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| 41 | ///-------------------------------------------------------------- |
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| 42 | |
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| 43 | const StdString & CNc4DataOutput::getFileName(void) const |
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| 44 | { |
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| 45 | return (this->filename); |
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| 46 | } |
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| 47 | |
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| 48 | //--------------------------------------------------------------- |
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| 49 | |
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[347] | 50 | void CNc4DataOutput::writeDomain_(CDomain* domain) |
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[219] | 51 | { |
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[1129] | 52 | domain->computeWrittenIndex(); |
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[881] | 53 | if (domain->type == CDomain::type_attr::unstructured) |
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| 54 | { |
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| 55 | if (SuperClassWriter::useCFConvention) |
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| 56 | writeUnstructuredDomain(domain) ; |
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| 57 | else |
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| 58 | writeUnstructuredDomainUgrid(domain) ; |
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| 59 | return ; |
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| 60 | } |
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[488] | 61 | |
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[1129] | 62 | |
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[347] | 63 | CContext* context = CContext::getCurrent() ; |
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[300] | 64 | CContextServer* server=context->server ; |
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[488] | 65 | |
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[219] | 66 | if (domain->IsWritten(this->filename)) return; |
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| 67 | domain->checkAttributes(); |
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[488] | 68 | |
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| 69 | if (domain->isEmpty()) |
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[881] | 70 | if (SuperClass::type==MULTI_FILE) return; |
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[219] | 71 | |
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| 72 | std::vector<StdString> dim0, dim1; |
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[772] | 73 | StdString domid = domain->getDomainOutputName(); |
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[318] | 74 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
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[706] | 75 | if (isWrittenDomain(domid)) return ; |
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[774] | 76 | else setWrittenDomain(domid); |
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[1132] | 77 | |
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| 78 | int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex; |
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[449] | 79 | |
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| 80 | StdString dimXid, dimYid ; |
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[488] | 81 | |
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[664] | 82 | bool isRegularDomain = (domain->type == CDomain::type_attr::rectilinear); |
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[449] | 83 | switch (domain->type) |
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[433] | 84 | { |
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[449] | 85 | case CDomain::type_attr::curvilinear : |
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| 86 | dimXid = StdString("x").append(appendDomid); |
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| 87 | dimYid = StdString("y").append(appendDomid); |
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| 88 | break ; |
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[664] | 89 | case CDomain::type_attr::rectilinear : |
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[449] | 90 | dimXid = StdString("lon").append(appendDomid); |
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| 91 | dimYid = StdString("lat").append(appendDomid); |
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| 92 | break; |
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[488] | 93 | } |
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| 94 | |
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[617] | 95 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
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| 96 | |
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[449] | 97 | string lonid,latid,bounds_lonid,bounds_latid ; |
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[611] | 98 | string areaId = "area" + appendDomid; |
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[391] | 99 | /* |
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[300] | 100 | StdString lonid_loc = (server->intraCommSize > 1) |
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[318] | 101 | ? StdString("lon").append(appendDomid).append("_local") |
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[278] | 102 | : lonid; |
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[300] | 103 | StdString latid_loc = (server->intraCommSize > 1) |
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[318] | 104 | ? StdString("lat").append(appendDomid).append("_local") |
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[278] | 105 | : latid; |
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[391] | 106 | */ |
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[219] | 107 | |
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[1129] | 108 | CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer; |
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| 109 | int nbWritten = indexToWrite.numElements(); |
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| 110 | CArray<double,1> writtenLat, writtenLon; |
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| 111 | CArray<double,2> writtenBndsLat, writtenBndsLon; |
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| 112 | CArray<double,1> writtenArea; |
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| 113 | |
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| 114 | if (domain->hasLonLat) |
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| 115 | { |
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| 116 | writtenLat.resize(nbWritten); |
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| 117 | writtenLon.resize(nbWritten); |
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| 118 | for (int idx = 0; idx < nbWritten; ++idx) |
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| 119 | { |
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| 120 | writtenLat(idx) = domain->latvalue(indexToWrite(idx)); |
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| 121 | writtenLon(idx) = domain->lonvalue(indexToWrite(idx)); |
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| 122 | } |
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| 123 | |
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| 124 | |
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| 125 | if (domain->hasBounds) |
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| 126 | { |
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| 127 | int nvertex = domain->nvertex, idx; |
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| 128 | writtenBndsLat.resize(nvertex, nbWritten); |
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| 129 | writtenBndsLon.resize(nvertex, nbWritten); |
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| 130 | CArray<double,2>& boundslat = domain->bounds_latvalue; |
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| 131 | CArray<double,2>& boundslon = domain->bounds_lonvalue; |
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| 132 | for (idx = 0; idx < nbWritten; ++idx) |
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| 133 | for (int nv = 0; nv < nvertex; ++nv) |
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| 134 | { |
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| 135 | writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx))); |
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| 136 | writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx))); |
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| 137 | } |
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| 138 | } |
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| 139 | } |
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| 140 | |
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| 141 | if (domain->hasArea) |
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| 142 | { |
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| 143 | writtenArea.resize(nbWritten); |
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| 144 | for (int idx = 0; idx < nbWritten; ++idx) |
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| 145 | { |
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| 146 | writtenArea(idx) = domain->areavalue(indexToWrite(idx)); |
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| 147 | } |
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| 148 | } |
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| 149 | |
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[498] | 150 | try |
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[219] | 151 | { |
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[498] | 152 | switch (SuperClass::type) |
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| 153 | { |
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| 154 | case (MULTI_FILE) : |
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| 155 | { |
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| 156 | // if (domain->isEmpty()) return; |
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[488] | 157 | |
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[498] | 158 | if (server->intraCommSize > 1) |
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| 159 | { |
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| 160 | // SuperClassWriter::addDimension(lonid, domain->zoom_ni.getValue()); |
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| 161 | // SuperClassWriter::addDimension(latid, domain->zoom_nj.getValue()); |
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| 162 | } |
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[286] | 163 | |
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[498] | 164 | switch (domain->type) |
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| 165 | { |
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| 166 | case CDomain::type_attr::curvilinear : |
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| 167 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 168 | lonid = StdString("nav_lon").append(appendDomid); |
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| 169 | latid = StdString("nav_lat").append(appendDomid); |
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| 170 | break ; |
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[664] | 171 | case CDomain::type_attr::rectilinear : |
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[498] | 172 | lonid = StdString("lon").append(appendDomid); |
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| 173 | latid = StdString("lat").append(appendDomid); |
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| 174 | dim0.push_back(dimYid); |
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| 175 | dim1.push_back(dimXid); |
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| 176 | break; |
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| 177 | } |
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[488] | 178 | |
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[617] | 179 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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| 180 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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| 181 | |
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[1099] | 182 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni); |
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| 183 | SuperClassWriter::addDimension(dimYid, domain->zoom_nj); |
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[488] | 184 | |
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[617] | 185 | if (domain->hasBounds) |
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| 186 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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| 187 | |
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[498] | 188 | if (server->intraCommSize > 1) |
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| 189 | { |
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[1099] | 190 | this->writeLocalAttributes(domain->zoom_ibegin, |
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| 191 | domain->zoom_ni, |
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| 192 | domain->zoom_jbegin, |
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| 193 | domain->zoom_nj, |
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[616] | 194 | appendDomid); |
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[488] | 195 | |
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[628] | 196 | if (singleDomain) |
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| 197 | this->writeLocalAttributes_IOIPSL(dimXid, dimYid, |
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[1099] | 198 | domain->zoom_ibegin, |
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| 199 | domain->zoom_ni, |
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| 200 | domain->zoom_jbegin, |
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| 201 | domain->zoom_nj, |
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[628] | 202 | domain->ni_glo,domain->nj_glo, |
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| 203 | server->intraCommRank,server->intraCommSize); |
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[449] | 204 | } |
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[488] | 205 | |
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[665] | 206 | if (domain->hasLonLat) |
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[498] | 207 | { |
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[665] | 208 | switch (domain->type) |
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| 209 | { |
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| 210 | case CDomain::type_attr::curvilinear : |
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| 211 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 212 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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| 213 | break ; |
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| 214 | case CDomain::type_attr::rectilinear : |
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| 215 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 216 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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| 217 | break ; |
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| 218 | } |
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[488] | 219 | |
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[665] | 220 | this->writeAxisAttributes(lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
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| 221 | this->writeAxisAttributes(latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
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[219] | 222 | |
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[665] | 223 | if (domain->hasBounds) |
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| 224 | { |
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| 225 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
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| 226 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
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[617] | 227 | |
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[665] | 228 | dim0.clear(); |
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| 229 | dim0.push_back(dimYid); |
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| 230 | dim0.push_back(dimXid); |
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| 231 | dim0.push_back(dimVertId); |
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| 232 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
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| 233 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
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| 234 | } |
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[617] | 235 | } |
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| 236 | |
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[498] | 237 | dim0.clear(); |
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[616] | 238 | dim0.push_back(dimYid); |
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[498] | 239 | dim0.push_back(dimXid); |
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[219] | 240 | |
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| 241 | |
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[498] | 242 | // supress mask if (server->intraCommSize > 1) |
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| 243 | // supress mask { |
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| 244 | // supress mask SuperClassWriter::addVariable(maskid, NC_INT, dim0); |
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| 245 | // supress mask |
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| 246 | // supress mask this->writeMaskAttributes(maskid, |
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| 247 | // supress mask domain->data_dim.getValue()/*, |
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| 248 | // supress mask domain->data_ni.getValue(), |
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| 249 | // supress mask domain->data_nj.getValue(), |
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| 250 | // supress mask domain->data_ibegin.getValue(), |
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| 251 | // supress mask domain->data_jbegin.getValue()*/); |
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| 252 | // supress mask } |
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[488] | 253 | |
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[498] | 254 | //SuperClassWriter::setDefaultValue(maskid, &dvm); |
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[219] | 255 | |
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[611] | 256 | if (domain->hasArea) |
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| 257 | { |
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| 258 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
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[614] | 259 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
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[611] | 260 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
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| 261 | } |
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| 262 | |
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[498] | 263 | SuperClassWriter::definition_end(); |
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[449] | 264 | |
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[665] | 265 | if (domain->hasLonLat) |
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[498] | 266 | { |
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[665] | 267 | switch (domain->type) |
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| 268 | { |
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[1129] | 269 | case CDomain::type_attr::curvilinear : |
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| 270 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0); |
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| 271 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0); |
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[665] | 272 | break; |
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| 273 | case CDomain::type_attr::rectilinear : |
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[1129] | 274 | CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->zoom_ni)) ; |
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[665] | 275 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0); |
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[1129] | 276 | CArray<double,1> lon = writtenLon(Range(0,domain->zoom_ni-1)) ; |
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[665] | 277 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0); |
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| 278 | break; |
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| 279 | } |
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[611] | 280 | |
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[665] | 281 | if (domain->hasBounds) |
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| 282 | { |
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[1129] | 283 | SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0); |
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| 284 | SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0); |
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[665] | 285 | } |
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[617] | 286 | } |
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| 287 | |
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[611] | 288 | if (domain->hasArea) |
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[1129] | 289 | { |
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[1132] | 290 | SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0); |
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[1129] | 291 | } |
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| 292 | |
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[498] | 293 | SuperClassWriter::definition_start(); |
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[219] | 294 | |
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[498] | 295 | break; |
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| 296 | } |
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| 297 | case (ONE_FILE) : |
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| 298 | { |
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[1099] | 299 | SuperClassWriter::addDimension(dimXid, domain->global_zoom_ni); |
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| 300 | SuperClassWriter::addDimension(dimYid, domain->global_zoom_nj); |
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[286] | 301 | |
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[617] | 302 | if (domain->hasBounds) |
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| 303 | SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
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| 304 | |
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[665] | 305 | if (domain->hasLonLat) |
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[498] | 306 | { |
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[665] | 307 | switch (domain->type) |
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| 308 | { |
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| 309 | case CDomain::type_attr::curvilinear : |
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| 310 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 311 | lonid = StdString("nav_lon").append(appendDomid); |
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| 312 | latid = StdString("nav_lat").append(appendDomid); |
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| 313 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 314 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
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| 315 | break; |
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[449] | 316 | |
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[665] | 317 | case CDomain::type_attr::rectilinear : |
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| 318 | dim0.push_back(dimYid); |
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| 319 | dim1.push_back(dimXid); |
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| 320 | lonid = StdString("lon").append(appendDomid); |
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| 321 | latid = StdString("lat").append(appendDomid); |
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| 322 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
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| 323 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim1); |
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| 324 | break; |
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| 325 | } |
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| 326 | |
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| 327 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
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| 328 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
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| 329 | |
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| 330 | this->writeAxisAttributes |
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| 331 | (lonid, isRegularDomain ? "X" : "", "longitude", "Longitude", "degrees_east", domid); |
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| 332 | this->writeAxisAttributes |
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| 333 | (latid, isRegularDomain ? "Y" : "", "latitude", "Latitude", "degrees_north", domid); |
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| 334 | |
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| 335 | if (domain->hasBounds) |
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| 336 | { |
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| 337 | SuperClassWriter::addAttribute("bounds", bounds_lonid, &lonid); |
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| 338 | SuperClassWriter::addAttribute("bounds", bounds_latid, &latid); |
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| 339 | |
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| 340 | dim0.clear(); |
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[498] | 341 | dim0.push_back(dimYid); |
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[665] | 342 | dim0.push_back(dimXid); |
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| 343 | dim0.push_back(dimVertId); |
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| 344 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
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| 345 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
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| 346 | } |
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[498] | 347 | } |
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[611] | 348 | |
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| 349 | if (domain->hasArea) |
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| 350 | { |
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| 351 | dim0.clear(); |
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| 352 | dim0.push_back(dimYid); dim0.push_back(dimXid); |
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| 353 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
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[614] | 354 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
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[611] | 355 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
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| 356 | dim0.clear(); |
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| 357 | } |
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| 358 | |
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| 359 | SuperClassWriter::definition_end(); |
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[286] | 360 | |
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[498] | 361 | switch (domain->type) |
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[384] | 362 | { |
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[498] | 363 | case CDomain::type_attr::curvilinear : |
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[449] | 364 | { |
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[498] | 365 | std::vector<StdSize> start(2) ; |
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| 366 | std::vector<StdSize> count(2) ; |
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| 367 | if (domain->isEmpty()) |
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| 368 | { |
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[611] | 369 | start[0]=0 ; start[1]=0 ; |
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[498] | 370 | count[0]=0 ; count[1]=0 ; |
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| 371 | } |
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| 372 | else |
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| 373 | { |
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[1099] | 374 | start[1]=domain->zoom_ibegin-domain->global_zoom_ibegin; |
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| 375 | start[0]=domain->zoom_jbegin-domain->global_zoom_jbegin; |
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| 376 | count[1]=domain->zoom_ni ; count[0]=domain->zoom_nj ; |
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[498] | 377 | } |
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[488] | 378 | |
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[665] | 379 | if (domain->hasLonLat) |
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| 380 | { |
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[1129] | 381 | // SuperClassWriter::writeData(domain->latvalue, latid, isCollective, 0,&start,&count); |
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| 382 | // SuperClassWriter::writeData(domain->lonvalue, lonid, isCollective, 0,&start,&count); |
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| 383 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count); |
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| 384 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count); |
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[665] | 385 | } |
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[498] | 386 | break; |
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| 387 | } |
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[664] | 388 | case CDomain::type_attr::rectilinear : |
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[449] | 389 | { |
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[665] | 390 | if (domain->hasLonLat) |
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[498] | 391 | { |
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[665] | 392 | std::vector<StdSize> start(1) ; |
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| 393 | std::vector<StdSize> count(1) ; |
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| 394 | if (domain->isEmpty()) |
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| 395 | { |
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| 396 | start[0]=0 ; |
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| 397 | count[0]=0 ; |
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[1129] | 398 | // SuperClassWriter::writeData(domain->latvalue, latid, isCollective, 0,&start,&count); |
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| 399 | // SuperClassWriter::writeData(domain->lonvalue, lonid, isCollective, 0,&start,&count); |
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[449] | 400 | |
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[1129] | 401 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count); |
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| 402 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count); |
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[665] | 403 | } |
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| 404 | else |
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[1129] | 405 | { |
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[1099] | 406 | start[0]=domain->zoom_jbegin-domain->global_zoom_jbegin; |
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| 407 | count[0]=domain->zoom_nj; |
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[1129] | 408 | // CArray<double,1> lat = domain->latvalue(Range(fromStart,toEnd,domain->zoom_ni)); |
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| 409 | CArray<double,1> lat = writtenLat(Range(fromStart,toEnd,domain->zoom_ni)); |
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[665] | 410 | SuperClassWriter::writeData(CArray<double,1>(lat.copy()), latid, isCollective, 0,&start,&count); |
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| 411 | |
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[1099] | 412 | start[0]=domain->zoom_ibegin-domain->global_zoom_ibegin; |
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| 413 | count[0]=domain->zoom_ni; |
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[1129] | 414 | // CArray<double,1> lon=domain->lonvalue(Range(0,domain->zoom_ni-1)); |
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| 415 | CArray<double,1> lon = writtenLon(Range(0,domain->zoom_ni-1)); |
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[665] | 416 | SuperClassWriter::writeData(CArray<double,1>(lon.copy()), lonid, isCollective, 0,&start,&count); |
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| 417 | } |
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[498] | 418 | } |
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| 419 | break; |
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[449] | 420 | } |
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[384] | 421 | } |
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[611] | 422 | |
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[617] | 423 | if (domain->hasBounds) |
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| 424 | { |
---|
| 425 | std::vector<StdSize> start(3); |
---|
| 426 | std::vector<StdSize> count(3); |
---|
| 427 | if (domain->isEmpty()) |
---|
| 428 | { |
---|
| 429 | start[2] = start[1] = start[0] = 0; |
---|
| 430 | count[2] = count[1] = count[0] = 0; |
---|
| 431 | } |
---|
| 432 | else |
---|
| 433 | { |
---|
| 434 | start[2] = 0; |
---|
[1099] | 435 | start[1] = domain->zoom_ibegin - domain->global_zoom_ibegin; |
---|
| 436 | start[0] = domain->zoom_jbegin - domain->global_zoom_jbegin; |
---|
| 437 | count[2] = domain->nvertex; |
---|
| 438 | count[1] = domain->zoom_ni; |
---|
| 439 | count[0] = domain->zoom_nj; |
---|
[617] | 440 | } |
---|
[625] | 441 | |
---|
[1129] | 442 | // SuperClassWriter::writeData(domain->bounds_lonvalue, bounds_lonid, isCollective, 0, &start, &count); |
---|
| 443 | // SuperClassWriter::writeData(domain->bounds_latvalue, bounds_latid, isCollective, 0, &start, &count); |
---|
| 444 | SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0, &start, &count); |
---|
| 445 | SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0, &start, &count); |
---|
[617] | 446 | } |
---|
| 447 | |
---|
[611] | 448 | if (domain->hasArea) |
---|
| 449 | { |
---|
| 450 | std::vector<StdSize> start(2); |
---|
| 451 | std::vector<StdSize> count(2); |
---|
| 452 | |
---|
| 453 | if (domain->isEmpty()) |
---|
| 454 | { |
---|
| 455 | start[0] = 0; start[1] = 0; |
---|
| 456 | count[0] = 0; count[1] = 0; |
---|
| 457 | } |
---|
| 458 | else |
---|
| 459 | { |
---|
[1099] | 460 | start[1] = domain->zoom_ibegin - domain->global_zoom_ibegin; |
---|
| 461 | start[0] = domain->zoom_jbegin - domain->global_zoom_jbegin; |
---|
| 462 | count[1] = domain->zoom_ni; |
---|
| 463 | count[0] = domain->zoom_nj; |
---|
[611] | 464 | } |
---|
| 465 | |
---|
[1129] | 466 | // SuperClassWriter::writeData(domain->areavalue, areaId, isCollective, 0, &start, &count); |
---|
| 467 | SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count); |
---|
[611] | 468 | } |
---|
| 469 | |
---|
[498] | 470 | SuperClassWriter::definition_start(); |
---|
| 471 | break; |
---|
| 472 | } |
---|
| 473 | default : |
---|
| 474 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 475 | << "[ type = " << SuperClass::type << "]" |
---|
| 476 | << " not implemented yet !"); |
---|
| 477 | } |
---|
[449] | 478 | } |
---|
[498] | 479 | catch (CNetCdfException& e) |
---|
| 480 | { |
---|
| 481 | StdString msg("On writing the domain : "); |
---|
| 482 | msg.append(domid); msg.append("\n"); |
---|
| 483 | msg.append("In the context : "); |
---|
| 484 | msg.append(context->getId()); msg.append("\n"); |
---|
| 485 | msg.append(e.what()); |
---|
| 486 | ERROR("CNc4DataOutput::writeDomain_(CDomain* domain)", << msg); |
---|
| 487 | } |
---|
| 488 | |
---|
[449] | 489 | domain->addRelFile(this->filename); |
---|
| 490 | } |
---|
| 491 | |
---|
[879] | 492 | //-------------------------------------------------------------- |
---|
[878] | 493 | |
---|
[879] | 494 | void CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain) |
---|
| 495 | { |
---|
| 496 | CContext* context = CContext::getCurrent() ; |
---|
| 497 | CContextServer* server=context->server ; |
---|
[878] | 498 | |
---|
[879] | 499 | if (domain->IsWritten(this->filename)) return; |
---|
| 500 | domain->checkAttributes(); |
---|
| 501 | if (domain->isEmpty()) |
---|
| 502 | if (SuperClass::type==MULTI_FILE) return ; |
---|
[878] | 503 | |
---|
[879] | 504 | std::vector<StdString> dim0; |
---|
| 505 | StdString domid = domain->getDomainOutputName(); |
---|
| 506 | StdString domainName = domain->name; |
---|
[924] | 507 | domain->assignMesh(domainName, domain->nvertex); |
---|
[1025] | 508 | domain->mesh->createMeshEpsilon(server->intraComm, domain->lonvalue, domain->latvalue, domain->bounds_lonvalue, domain->bounds_latvalue); |
---|
[878] | 509 | |
---|
[879] | 510 | StdString node_x = domainName + "_node_x"; |
---|
| 511 | StdString node_y = domainName + "_node_y"; |
---|
[878] | 512 | |
---|
[879] | 513 | StdString edge_x = domainName + "_edge_x"; |
---|
| 514 | StdString edge_y = domainName + "_edge_y"; |
---|
| 515 | StdString edge_nodes = domainName + "_edge_nodes"; |
---|
[878] | 516 | |
---|
[879] | 517 | StdString face_x = domainName + "_face_x"; |
---|
| 518 | StdString face_y = domainName + "_face_y"; |
---|
| 519 | StdString face_nodes = domainName + "_face_nodes"; |
---|
[902] | 520 | StdString face_edges = domainName + "_face_edges"; |
---|
| 521 | StdString edge_faces = domainName + "_edge_face_links"; |
---|
| 522 | StdString face_faces = domainName + "_face_links"; |
---|
[878] | 523 | |
---|
[879] | 524 | StdString dimNode = "n" + domainName + "_node"; |
---|
| 525 | StdString dimEdge = "n" + domainName + "_edge"; |
---|
| 526 | StdString dimFace = "n" + domainName + "_face"; |
---|
| 527 | StdString dimVertex = "n" + domainName + "_vertex"; |
---|
| 528 | StdString dimTwo = "Two"; |
---|
[878] | 529 | |
---|
[879] | 530 | if (!SuperClassWriter::dimExist(dimTwo)) SuperClassWriter::addDimension(dimTwo, 2); |
---|
| 531 | if (!isWrittenDomain(domid)) |
---|
| 532 | { |
---|
| 533 | dim0.clear(); |
---|
| 534 | SuperClassWriter::addVariable(domainName, NC_INT, dim0); |
---|
| 535 | SuperClassWriter::addAttribute("cf_role", StdString("mesh_topology"), &domainName); |
---|
[924] | 536 | SuperClassWriter::addAttribute("long_name", StdString("Topology data of 2D unstructured mesh"), &domainName); |
---|
| 537 | SuperClassWriter::addAttribute("topology_dimension", 2, &domainName); |
---|
[879] | 538 | SuperClassWriter::addAttribute("node_coordinates", node_x + " " + node_y, &domainName); |
---|
| 539 | } |
---|
[878] | 540 | |
---|
[879] | 541 | try |
---|
| 542 | { |
---|
| 543 | switch (SuperClass::type) |
---|
| 544 | { |
---|
| 545 | case (ONE_FILE) : |
---|
| 546 | { |
---|
| 547 | // Adding nodes |
---|
| 548 | if (domain->nvertex == 1) |
---|
| 549 | { |
---|
| 550 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 551 | { |
---|
[902] | 552 | SuperClassWriter::addDimension(dimNode, domain->ni_glo); |
---|
[879] | 553 | dim0.clear(); |
---|
| 554 | dim0.push_back(dimNode); |
---|
| 555 | SuperClassWriter::addVariable(node_x, NC_FLOAT, dim0); |
---|
| 556 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 557 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 558 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
| 559 | SuperClassWriter::addVariable(node_y, NC_FLOAT, dim0); |
---|
| 560 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 561 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 562 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 563 | } |
---|
| 564 | } // domain->nvertex == 1 |
---|
[878] | 565 | |
---|
[879] | 566 | // Adding edges and nodes, if nodes have not been defined previously |
---|
| 567 | if (domain->nvertex == 2) |
---|
| 568 | { |
---|
| 569 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 570 | { |
---|
[924] | 571 | SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo); |
---|
[879] | 572 | dim0.clear(); |
---|
| 573 | dim0.push_back(dimNode); |
---|
| 574 | SuperClassWriter::addVariable(node_x, NC_FLOAT, dim0); |
---|
| 575 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 576 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 577 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
| 578 | SuperClassWriter::addVariable(node_y, NC_FLOAT, dim0); |
---|
| 579 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 580 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 581 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 582 | } |
---|
[924] | 583 | SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName); |
---|
| 584 | SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName); |
---|
| 585 | SuperClassWriter::addDimension(dimEdge, domain->ni_glo); |
---|
| 586 | dim0.clear(); |
---|
| 587 | dim0.push_back(dimEdge); |
---|
| 588 | SuperClassWriter::addVariable(edge_x, NC_FLOAT, dim0); |
---|
| 589 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x); |
---|
| 590 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x); |
---|
| 591 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x); |
---|
| 592 | SuperClassWriter::addVariable(edge_y, NC_FLOAT, dim0); |
---|
| 593 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y); |
---|
| 594 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y); |
---|
| 595 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y); |
---|
| 596 | dim0.clear(); |
---|
| 597 | dim0.push_back(dimEdge); |
---|
| 598 | dim0.push_back(dimTwo); |
---|
| 599 | SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0); |
---|
| 600 | SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes); |
---|
| 601 | SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes); |
---|
| 602 | SuperClassWriter::addAttribute("start_index", 0, &edge_nodes); |
---|
[879] | 603 | } // domain->nvertex == 2 |
---|
[878] | 604 | |
---|
[879] | 605 | // Adding faces, edges, and nodes, if edges and nodes have not been defined previously |
---|
| 606 | if (domain->nvertex > 2) |
---|
| 607 | { |
---|
| 608 | // Nodes |
---|
| 609 | if (!SuperClassWriter::varExist(node_x) || !SuperClassWriter::varExist(node_y)) |
---|
| 610 | { |
---|
[924] | 611 | SuperClassWriter::addDimension(dimNode, domain->mesh->nbNodesGlo); |
---|
[879] | 612 | dim0.clear(); |
---|
| 613 | dim0.push_back(dimNode); |
---|
| 614 | SuperClassWriter::addVariable(node_x, NC_FLOAT, dim0); |
---|
| 615 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &node_x); |
---|
[924] | 616 | SuperClassWriter::addAttribute("long_name", StdString("Longitude of mesh nodes."), &node_x); |
---|
[879] | 617 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &node_x); |
---|
| 618 | SuperClassWriter::addVariable(node_y, NC_FLOAT, dim0); |
---|
| 619 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &node_y); |
---|
[924] | 620 | SuperClassWriter::addAttribute("long_name", StdString("Latitude of mesh nodes."), &node_y); |
---|
[879] | 621 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &node_y); |
---|
| 622 | } |
---|
| 623 | if (!SuperClassWriter::varExist(edge_x) || !SuperClassWriter::varExist(edge_y)) |
---|
| 624 | { |
---|
| 625 | SuperClassWriter::addAttribute("edge_coordinates", edge_x + " " + edge_y, &domainName); |
---|
| 626 | SuperClassWriter::addAttribute("edge_node_connectivity", edge_nodes, &domainName); |
---|
[924] | 627 | SuperClassWriter::addDimension(dimEdge, domain->mesh->nbEdgesGlo); |
---|
[879] | 628 | dim0.clear(); |
---|
| 629 | dim0.push_back(dimEdge); |
---|
| 630 | SuperClassWriter::addVariable(edge_x, NC_FLOAT, dim0); |
---|
| 631 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &edge_x); |
---|
[924] | 632 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh edges."), &edge_x); |
---|
[879] | 633 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &edge_x); |
---|
| 634 | SuperClassWriter::addVariable(edge_y, NC_FLOAT, dim0); |
---|
| 635 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &edge_y); |
---|
[924] | 636 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh edges."), &edge_y); |
---|
[879] | 637 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &edge_y); |
---|
| 638 | dim0.clear(); |
---|
| 639 | dim0.push_back(dimEdge); |
---|
| 640 | dim0.push_back(dimTwo); |
---|
| 641 | SuperClassWriter::addVariable(edge_nodes, NC_INT, dim0); |
---|
| 642 | SuperClassWriter::addAttribute("cf_role", StdString("edge_node_connectivity"), &edge_nodes); |
---|
| 643 | SuperClassWriter::addAttribute("long_name", StdString("Maps every edge/link to two nodes that it connects."), &edge_nodes); |
---|
| 644 | SuperClassWriter::addAttribute("start_index", 0, &edge_nodes); |
---|
| 645 | } |
---|
[924] | 646 | SuperClassWriter::addAttribute("face_coordinates", face_x + " " + face_y, &domainName); |
---|
| 647 | SuperClassWriter::addAttribute("face_node_connectivity", face_nodes, &domainName); |
---|
| 648 | SuperClassWriter::addDimension(dimFace, domain->ni_glo); |
---|
| 649 | SuperClassWriter::addDimension(dimVertex, domain->nvertex); |
---|
| 650 | dim0.clear(); |
---|
| 651 | dim0.push_back(dimFace); |
---|
| 652 | SuperClassWriter::addVariable(face_x, NC_FLOAT, dim0); |
---|
| 653 | SuperClassWriter::addAttribute("standard_name", StdString("longitude"), &face_x); |
---|
| 654 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic longitude of mesh faces."), &face_x); |
---|
| 655 | SuperClassWriter::addAttribute("units", StdString("degrees_east"), &face_x); |
---|
| 656 | SuperClassWriter::addVariable(face_y, NC_FLOAT, dim0); |
---|
| 657 | SuperClassWriter::addAttribute("standard_name", StdString("latitude"), &face_y); |
---|
| 658 | SuperClassWriter::addAttribute("long_name", StdString("Characteristic latitude of mesh faces."), &face_y); |
---|
| 659 | SuperClassWriter::addAttribute("units", StdString("degrees_north"), &face_y); |
---|
| 660 | dim0.clear(); |
---|
| 661 | dim0.push_back(dimFace); |
---|
| 662 | dim0.push_back(dimVertex); |
---|
| 663 | SuperClassWriter::addVariable(face_nodes, NC_INT, dim0); |
---|
| 664 | SuperClassWriter::addAttribute("cf_role", StdString("face_node_connectivity"), &face_nodes); |
---|
| 665 | SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its corner nodes."), &face_nodes); |
---|
| 666 | SuperClassWriter::addAttribute("start_index", 0, &face_nodes); |
---|
| 667 | dim0.clear(); |
---|
| 668 | dim0.push_back(dimFace); |
---|
| 669 | dim0.push_back(dimVertex); |
---|
| 670 | SuperClassWriter::addVariable(face_edges, NC_INT, dim0); |
---|
| 671 | SuperClassWriter::addAttribute("cf_role", StdString("face_edge_connectivity"), &face_edges); |
---|
| 672 | SuperClassWriter::addAttribute("long_name", StdString("Maps every face to its edges."), &face_edges); |
---|
| 673 | SuperClassWriter::addAttribute("start_index", 0, &face_edges); |
---|
[929] | 674 | SuperClassWriter::addAttribute("_FillValue", 999999, &face_edges); |
---|
[924] | 675 | dim0.clear(); |
---|
| 676 | dim0.push_back(dimEdge); |
---|
| 677 | dim0.push_back(dimTwo); |
---|
| 678 | SuperClassWriter::addVariable(edge_faces, NC_INT, dim0); |
---|
| 679 | SuperClassWriter::addAttribute("cf_role", StdString("edge_face connectivity"), &edge_faces); |
---|
| 680 | SuperClassWriter::addAttribute("long_name", StdString("neighbor faces for edges"), &edge_faces); |
---|
| 681 | SuperClassWriter::addAttribute("start_index", 0, &edge_faces); |
---|
| 682 | SuperClassWriter::addAttribute("_FillValue", -999, &edge_faces); |
---|
| 683 | SuperClassWriter::addAttribute("comment", StdString("missing neighbor faces are indicated using _FillValue"), &edge_faces); |
---|
| 684 | dim0.clear(); |
---|
| 685 | dim0.push_back(dimFace); |
---|
| 686 | dim0.push_back(dimVertex); |
---|
| 687 | SuperClassWriter::addVariable(face_faces, NC_INT, dim0); |
---|
| 688 | SuperClassWriter::addAttribute("cf_role", StdString("face_face connectivity"), &face_faces); |
---|
| 689 | SuperClassWriter::addAttribute("long_name", StdString("Indicates which other faces neighbor each face"), &face_faces); |
---|
| 690 | SuperClassWriter::addAttribute("start_index", 0, &face_faces); |
---|
[929] | 691 | SuperClassWriter::addAttribute("_FillValue", 999999, &face_faces); |
---|
[924] | 692 | SuperClassWriter::addAttribute("flag_values", -1, &face_faces); |
---|
| 693 | SuperClassWriter::addAttribute("flag_meanings", StdString("out_of_mesh"), &face_faces); |
---|
[879] | 694 | } // domain->nvertex > 2 |
---|
[878] | 695 | |
---|
[879] | 696 | SuperClassWriter::definition_end(); |
---|
[878] | 697 | |
---|
[924] | 698 | std::vector<StdSize> startEdges(1) ; |
---|
| 699 | std::vector<StdSize> countEdges(1) ; |
---|
| 700 | std::vector<StdSize> startNodes(1) ; |
---|
| 701 | std::vector<StdSize> countNodes(1) ; |
---|
| 702 | std::vector<StdSize> startFaces(1) ; |
---|
| 703 | std::vector<StdSize> countFaces(1) ; |
---|
| 704 | std::vector<StdSize> startEdgeNodes(2) ; |
---|
| 705 | std::vector<StdSize> countEdgeNodes(2) ; |
---|
| 706 | std::vector<StdSize> startEdgeFaces(2) ; |
---|
| 707 | std::vector<StdSize> countEdgeFaces(2) ; |
---|
| 708 | std::vector<StdSize> startFaceConctv(2) ; |
---|
| 709 | std::vector<StdSize> countFaceConctv(2) ; |
---|
[902] | 710 | |
---|
[879] | 711 | if (!isWrittenDomain(domid)) |
---|
| 712 | { |
---|
| 713 | if (domain->nvertex == 1) |
---|
| 714 | { |
---|
[924] | 715 | if (domain->isEmpty()) |
---|
| 716 | { |
---|
| 717 | startNodes[0]=0 ; |
---|
| 718 | countNodes[0]=0 ; |
---|
| 719 | } |
---|
| 720 | else |
---|
| 721 | { |
---|
[1132] | 722 | startNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 723 | countNodes[0] = domain->zoom_ni ; |
---|
[924] | 724 | } |
---|
| 725 | |
---|
| 726 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 727 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
[879] | 728 | } |
---|
| 729 | else if (domain->nvertex == 2) |
---|
[924] | 730 | { |
---|
| 731 | if (domain->isEmpty()) |
---|
| 732 | { |
---|
| 733 | startEdges[0]=0 ; |
---|
| 734 | countEdges[0]=0 ; |
---|
| 735 | startNodes[0]=0 ; |
---|
| 736 | countNodes[0]=0 ; |
---|
| 737 | startEdgeNodes[0]=0; |
---|
| 738 | startEdgeNodes[1]=0; |
---|
| 739 | countEdgeNodes[0]=0; |
---|
| 740 | countEdgeNodes[1]=0; |
---|
| 741 | |
---|
| 742 | } |
---|
| 743 | else |
---|
| 744 | { |
---|
[1132] | 745 | startEdges[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 746 | countEdges[0] = domain->zoom_ni; |
---|
[924] | 747 | startNodes[0] = domain->mesh->node_start; |
---|
| 748 | countNodes[0] = domain->mesh->node_count; |
---|
[1132] | 749 | startEdgeNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
[924] | 750 | startEdgeNodes[1] = 0; |
---|
[1132] | 751 | countEdgeNodes[0] = domain->zoom_ni; |
---|
| 752 | countEdgeNodes[1] = 2; |
---|
[924] | 753 | } |
---|
| 754 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 755 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
| 756 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 757 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 758 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
| 759 | } |
---|
[879] | 760 | else |
---|
| 761 | { |
---|
[924] | 762 | if (domain->isEmpty()) |
---|
| 763 | { |
---|
| 764 | startFaces[0] = 0 ; |
---|
| 765 | countFaces[0] = 0 ; |
---|
| 766 | startNodes[0] = 0; |
---|
| 767 | countNodes[0] = 0; |
---|
| 768 | startEdges[0] = 0; |
---|
| 769 | countEdges[0] = 0; |
---|
| 770 | startEdgeFaces[0] = 0; |
---|
| 771 | startEdgeFaces[1] = 0; |
---|
| 772 | countEdgeFaces[0] = 0; |
---|
| 773 | countEdgeFaces[1] = 0; |
---|
| 774 | startFaceConctv[0] = 0; |
---|
| 775 | startFaceConctv[1] = 0; |
---|
| 776 | countFaceConctv[0] = 0; |
---|
| 777 | countFaceConctv[1] = 0; |
---|
| 778 | } |
---|
| 779 | else |
---|
| 780 | { |
---|
[1132] | 781 | startFaces[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 782 | countFaces[0] = domain->zoom_ni ; |
---|
[924] | 783 | startNodes[0] = domain->mesh->node_start; |
---|
| 784 | countNodes[0] = domain->mesh->node_count; |
---|
| 785 | startEdges[0] = domain->mesh->edge_start; |
---|
| 786 | countEdges[0] = domain->mesh->edge_count; |
---|
| 787 | startEdgeNodes[0] = domain->mesh->edge_start; |
---|
| 788 | startEdgeNodes[1] = 0; |
---|
| 789 | countEdgeNodes[0] = domain->mesh->edge_count; |
---|
| 790 | countEdgeNodes[1]= 2; |
---|
| 791 | startEdgeFaces[0] = domain->mesh->edge_start; |
---|
| 792 | startEdgeFaces[1]= 0; |
---|
| 793 | countEdgeFaces[0] = domain->mesh->edge_count; |
---|
| 794 | countEdgeFaces[1]= 2; |
---|
[1132] | 795 | startFaceConctv[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 796 | startFaceConctv[1] = 0; |
---|
| 797 | countFaceConctv[0] = domain->zoom_ni; |
---|
[924] | 798 | countFaceConctv[1] = domain->nvertex; |
---|
| 799 | } |
---|
| 800 | SuperClassWriter::writeData(domain->mesh->node_lat, node_y, isCollective, 0, &startNodes, &countNodes); |
---|
| 801 | SuperClassWriter::writeData(domain->mesh->node_lon, node_x, isCollective, 0, &startNodes, &countNodes); |
---|
| 802 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 803 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 804 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
| 805 | SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces); |
---|
| 806 | SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces); |
---|
| 807 | SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 808 | SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 809 | SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces); |
---|
| 810 | SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
[879] | 811 | } |
---|
| 812 | setWrittenDomain(domid); |
---|
| 813 | } // !isWrittenDomain |
---|
| 814 | else |
---|
| 815 | { |
---|
| 816 | if (domain->nvertex == 2) |
---|
| 817 | { |
---|
[1132] | 818 | startEdges[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 819 | countEdges[0] = domain->zoom_ni; |
---|
| 820 | startEdgeNodes[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 821 | startEdgeNodes[1] = 0; |
---|
| 822 | countEdgeNodes[0] = domain->zoom_ni; |
---|
[924] | 823 | countEdgeNodes[1]= 2; |
---|
| 824 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 825 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 826 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
[879] | 827 | } |
---|
| 828 | if (domain->nvertex > 2) |
---|
| 829 | { |
---|
[924] | 830 | |
---|
[879] | 831 | if (!domain->mesh->edgesAreWritten) |
---|
| 832 | { |
---|
[924] | 833 | startEdges[0] = domain->mesh->edge_start; |
---|
| 834 | countEdges[0] = domain->mesh->edge_count; |
---|
| 835 | startEdgeNodes[0] = domain->mesh->edge_start; |
---|
| 836 | startEdgeNodes[1] = 0; |
---|
| 837 | countEdgeNodes[0] = domain->mesh->edge_count; |
---|
| 838 | countEdgeNodes[1]= 2; |
---|
| 839 | SuperClassWriter::writeData(domain->mesh->edge_lat, edge_y, isCollective, 0, &startEdges, &countEdges); |
---|
| 840 | SuperClassWriter::writeData(domain->mesh->edge_lon, edge_x, isCollective, 0, &startEdges, &countEdges); |
---|
| 841 | SuperClassWriter::writeData(domain->mesh->edge_nodes, edge_nodes, isCollective, 0, &startEdgeNodes, &countEdgeNodes); |
---|
[879] | 842 | } |
---|
[1132] | 843 | startFaces[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 844 | countFaces[0] = domain->zoom_ni; |
---|
[924] | 845 | startEdgeFaces[0] = domain->mesh->edge_start; |
---|
| 846 | startEdgeFaces[1]= 0; |
---|
| 847 | countEdgeFaces[0] = domain->mesh->edge_count; |
---|
| 848 | countEdgeFaces[1]= 2; |
---|
[1132] | 849 | startFaceConctv[0] = domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
| 850 | startFaceConctv[1] = 0; |
---|
| 851 | countFaceConctv[0] = domain->zoom_ni; |
---|
| 852 | countFaceConctv[1] = domain->nvertex; |
---|
[924] | 853 | SuperClassWriter::writeData(domain->mesh->face_lat, face_y, isCollective, 0, &startFaces, &countFaces); |
---|
| 854 | SuperClassWriter::writeData(domain->mesh->face_lon, face_x, isCollective, 0, &startFaces, &countFaces); |
---|
| 855 | SuperClassWriter::writeData(domain->mesh->face_nodes, face_nodes, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 856 | SuperClassWriter::writeData(domain->mesh->face_edges, face_edges, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
| 857 | SuperClassWriter::writeData(domain->mesh->edge_faces, edge_faces, isCollective, 0, &startEdgeFaces, &countEdgeFaces); |
---|
| 858 | SuperClassWriter::writeData(domain->mesh->face_faces, face_faces, isCollective, 0, &startFaceConctv, &countFaceConctv); |
---|
[879] | 859 | } |
---|
| 860 | }// isWrittenDomain |
---|
[878] | 861 | |
---|
[879] | 862 | SuperClassWriter::definition_start(); |
---|
[878] | 863 | |
---|
[879] | 864 | break; |
---|
| 865 | } // ONE_FILE |
---|
[878] | 866 | |
---|
[879] | 867 | case (MULTI_FILE) : |
---|
| 868 | { |
---|
| 869 | break; |
---|
| 870 | } |
---|
[878] | 871 | |
---|
[879] | 872 | default : |
---|
| 873 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 874 | << "[ type = " << SuperClass::type << "]" |
---|
| 875 | << " not implemented yet !"); |
---|
| 876 | } // switch |
---|
| 877 | } // try |
---|
[878] | 878 | |
---|
[879] | 879 | catch (CNetCdfException& e) |
---|
| 880 | { |
---|
| 881 | StdString msg("On writing the domain : "); |
---|
| 882 | msg.append(domid); msg.append("\n"); |
---|
| 883 | msg.append("In the context : "); |
---|
| 884 | msg.append(context->getId()); msg.append("\n"); |
---|
| 885 | msg.append(e.what()); |
---|
[924] | 886 | ERROR("CNc4DataOutput::writeUnstructuredDomainUgrid(CDomain* domain)", << msg); |
---|
[879] | 887 | } |
---|
[878] | 888 | |
---|
[879] | 889 | domain->addRelFile(this->filename); |
---|
| 890 | } |
---|
[878] | 891 | |
---|
[879] | 892 | //-------------------------------------------------------------- |
---|
[878] | 893 | |
---|
[879] | 894 | void CNc4DataOutput::writeUnstructuredDomain(CDomain* domain) |
---|
[449] | 895 | { |
---|
| 896 | CContext* context = CContext::getCurrent() ; |
---|
| 897 | CContextServer* server=context->server ; |
---|
[488] | 898 | |
---|
[449] | 899 | if (domain->IsWritten(this->filename)) return; |
---|
| 900 | domain->checkAttributes(); |
---|
[488] | 901 | |
---|
| 902 | if (domain->isEmpty()) |
---|
[449] | 903 | if (SuperClass::type==MULTI_FILE) return ; |
---|
| 904 | |
---|
| 905 | std::vector<StdString> dim0, dim1; |
---|
[772] | 906 | StdString domid = domain->getDomainOutputName(); |
---|
[705] | 907 | if (isWrittenDomain(domid)) return ; |
---|
[774] | 908 | else setWrittenDomain(domid); |
---|
[705] | 909 | |
---|
[449] | 910 | StdString appendDomid = (singleDomain) ? "" : "_"+domid ; |
---|
| 911 | |
---|
| 912 | StdString dimXid = StdString("cell").append(appendDomid); |
---|
| 913 | StdString dimVertId = StdString("nvertex").append(appendDomid); |
---|
[488] | 914 | |
---|
[449] | 915 | string lonid,latid,bounds_lonid,bounds_latid ; |
---|
[611] | 916 | string areaId = "area" + appendDomid; |
---|
[449] | 917 | |
---|
[1132] | 918 | int nvertex = (domain->nvertex.isEmpty()) ? 0 : domain->nvertex; |
---|
[1025] | 919 | |
---|
[1132] | 920 | CArray<size_t, 1>& indexToWrite = domain->localIndexToWriteOnServer; |
---|
| 921 | int nbWritten = indexToWrite.numElements(); |
---|
| 922 | CArray<double,1> writtenLat, writtenLon; |
---|
| 923 | CArray<double,2> writtenBndsLat, writtenBndsLon; |
---|
| 924 | CArray<double,1> writtenArea; |
---|
| 925 | |
---|
| 926 | if (domain->hasLonLat) |
---|
| 927 | { |
---|
| 928 | writtenLat.resize(nbWritten); |
---|
| 929 | writtenLon.resize(nbWritten); |
---|
| 930 | for (int idx = 0; idx < nbWritten; ++idx) |
---|
| 931 | { |
---|
| 932 | writtenLat(idx) = domain->latvalue(indexToWrite(idx)); |
---|
| 933 | writtenLon(idx) = domain->lonvalue(indexToWrite(idx)); |
---|
| 934 | } |
---|
| 935 | |
---|
| 936 | |
---|
| 937 | if (domain->hasBounds) |
---|
| 938 | { |
---|
| 939 | int nvertex = domain->nvertex, idx; |
---|
| 940 | writtenBndsLat.resize(nvertex, nbWritten); |
---|
| 941 | writtenBndsLon.resize(nvertex, nbWritten); |
---|
| 942 | CArray<double,2>& boundslat = domain->bounds_latvalue; |
---|
| 943 | CArray<double,2>& boundslon = domain->bounds_lonvalue; |
---|
| 944 | for (idx = 0; idx < nbWritten; ++idx) |
---|
| 945 | for (int nv = 0; nv < nvertex; ++nv) |
---|
| 946 | { |
---|
| 947 | writtenBndsLat(nv, idx) = boundslat(nv, int(indexToWrite(idx))); |
---|
| 948 | writtenBndsLon(nv, idx) = boundslon(nv, int(indexToWrite(idx))); |
---|
| 949 | } |
---|
| 950 | } |
---|
| 951 | } |
---|
| 952 | |
---|
| 953 | if (domain->hasArea) |
---|
| 954 | { |
---|
| 955 | writtenArea.resize(nbWritten); |
---|
| 956 | for (int idx = 0; idx < nbWritten; ++idx) |
---|
| 957 | { |
---|
| 958 | writtenArea(idx) = domain->areavalue(indexToWrite(idx)); |
---|
| 959 | } |
---|
| 960 | } |
---|
| 961 | |
---|
[498] | 962 | try |
---|
[449] | 963 | { |
---|
[498] | 964 | switch (SuperClass::type) |
---|
| 965 | { |
---|
| 966 | case (MULTI_FILE) : |
---|
| 967 | { |
---|
| 968 | dim0.push_back(dimXid); |
---|
[1132] | 969 | SuperClassWriter::addDimension(dimXid, domain->zoom_ni); |
---|
[488] | 970 | |
---|
[665] | 971 | lonid = StdString("lon").append(appendDomid); |
---|
| 972 | latid = StdString("lat").append(appendDomid); |
---|
[498] | 973 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 974 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
[665] | 975 | if (domain->hasLonLat) |
---|
| 976 | { |
---|
| 977 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
---|
| 978 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
---|
| 979 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 980 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
| 981 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 982 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
| 983 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, domain->nvertex); |
---|
| 984 | } |
---|
[498] | 985 | dim0.clear(); |
---|
| 986 | if (domain->hasBounds) |
---|
| 987 | { |
---|
| 988 | dim0.push_back(dimXid); |
---|
| 989 | dim0.push_back(dimVertId); |
---|
| 990 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
---|
| 991 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
---|
| 992 | } |
---|
| 993 | |
---|
| 994 | dim0.clear(); |
---|
[449] | 995 | dim0.push_back(dimXid); |
---|
[611] | 996 | if (domain->hasArea) |
---|
| 997 | { |
---|
| 998 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
---|
[614] | 999 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 1000 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 1001 | } |
---|
| 1002 | |
---|
[498] | 1003 | SuperClassWriter::definition_end(); |
---|
[449] | 1004 | |
---|
[665] | 1005 | if (domain->hasLonLat) |
---|
[498] | 1006 | { |
---|
[1132] | 1007 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0); |
---|
| 1008 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0); |
---|
[665] | 1009 | if (domain->hasBounds) |
---|
| 1010 | { |
---|
[1132] | 1011 | SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0); |
---|
| 1012 | SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0); |
---|
[665] | 1013 | } |
---|
[498] | 1014 | } |
---|
[611] | 1015 | |
---|
| 1016 | if (domain->hasArea) |
---|
[1132] | 1017 | SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0); |
---|
[611] | 1018 | |
---|
[498] | 1019 | SuperClassWriter::definition_start(); |
---|
| 1020 | break ; |
---|
| 1021 | } |
---|
[488] | 1022 | |
---|
[498] | 1023 | case (ONE_FILE) : |
---|
| 1024 | { |
---|
| 1025 | lonid = StdString("lon").append(appendDomid); |
---|
| 1026 | latid = StdString("lat").append(appendDomid); |
---|
| 1027 | bounds_lonid = StdString("bounds_lon").append(appendDomid); |
---|
| 1028 | bounds_latid = StdString("bounds_lat").append(appendDomid); |
---|
| 1029 | dim0.push_back(dimXid); |
---|
[1132] | 1030 | SuperClassWriter::addDimension(dimXid, domain->ni_glo); |
---|
[665] | 1031 | if (domain->hasLonLat) |
---|
| 1032 | { |
---|
| 1033 | SuperClassWriter::addVariable(latid, NC_FLOAT, dim0); |
---|
| 1034 | SuperClassWriter::addVariable(lonid, NC_FLOAT, dim0); |
---|
| 1035 | |
---|
| 1036 | this->writeAxisAttributes(lonid, "", "longitude", "Longitude", "degrees_east", domid); |
---|
| 1037 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_lonid, &lonid); |
---|
| 1038 | this->writeAxisAttributes(latid, "", "latitude", "Latitude", "degrees_north", domid); |
---|
| 1039 | if (domain->hasBounds) SuperClassWriter::addAttribute("bounds",bounds_latid, &latid); |
---|
[1025] | 1040 | if (domain->hasBounds) SuperClassWriter::addDimension(dimVertId, nvertex); |
---|
[665] | 1041 | } |
---|
[498] | 1042 | dim0.clear(); |
---|
[449] | 1043 | |
---|
[498] | 1044 | if (domain->hasBounds) |
---|
| 1045 | { |
---|
| 1046 | dim0.push_back(dimXid); |
---|
| 1047 | dim0.push_back(dimVertId); |
---|
| 1048 | SuperClassWriter::addVariable(bounds_lonid, NC_FLOAT, dim0); |
---|
| 1049 | SuperClassWriter::addVariable(bounds_latid, NC_FLOAT, dim0); |
---|
| 1050 | } |
---|
[488] | 1051 | |
---|
[611] | 1052 | if (domain->hasArea) |
---|
| 1053 | { |
---|
| 1054 | dim0.clear(); |
---|
| 1055 | dim0.push_back(dimXid); |
---|
| 1056 | SuperClassWriter::addVariable(areaId, NC_FLOAT, dim0); |
---|
[614] | 1057 | SuperClassWriter::addAttribute("standard_name", StdString("cell_area"), &areaId); |
---|
[611] | 1058 | SuperClassWriter::addAttribute("units", StdString("m2"), &areaId); |
---|
| 1059 | } |
---|
| 1060 | |
---|
[498] | 1061 | SuperClassWriter::definition_end(); |
---|
[488] | 1062 | |
---|
[498] | 1063 | std::vector<StdSize> start(1), startBounds(2) ; |
---|
| 1064 | std::vector<StdSize> count(1), countBounds(2) ; |
---|
| 1065 | if (domain->isEmpty()) |
---|
| 1066 | { |
---|
| 1067 | start[0]=0 ; |
---|
| 1068 | count[0]=0 ; |
---|
| 1069 | startBounds[1]=0 ; |
---|
[1025] | 1070 | countBounds[1]=nvertex ; |
---|
[498] | 1071 | startBounds[0]=0 ; |
---|
| 1072 | countBounds[0]=0 ; |
---|
| 1073 | } |
---|
| 1074 | else |
---|
| 1075 | { |
---|
[1132] | 1076 | start[0]=domain->zoom_ibegin - domain->global_zoom_ibegin; |
---|
| 1077 | count[0]=domain->zoom_ni; |
---|
| 1078 | startBounds[0]=domain->zoom_ibegin-domain->global_zoom_ibegin; |
---|
[498] | 1079 | startBounds[1]=0 ; |
---|
[1132] | 1080 | countBounds[0]=domain->zoom_ni; |
---|
[1025] | 1081 | countBounds[1]=nvertex ; |
---|
[498] | 1082 | } |
---|
[665] | 1083 | |
---|
| 1084 | if (domain->hasLonLat) |
---|
[498] | 1085 | { |
---|
[1132] | 1086 | SuperClassWriter::writeData(writtenLat, latid, isCollective, 0,&start,&count); |
---|
| 1087 | SuperClassWriter::writeData(writtenLon, lonid, isCollective, 0,&start,&count); |
---|
[665] | 1088 | if (domain->hasBounds) |
---|
| 1089 | { |
---|
[1132] | 1090 | SuperClassWriter::writeData(writtenBndsLon, bounds_lonid, isCollective, 0,&startBounds,&countBounds); |
---|
| 1091 | SuperClassWriter::writeData(writtenBndsLat, bounds_latid, isCollective, 0,&startBounds,&countBounds); |
---|
[665] | 1092 | } |
---|
[498] | 1093 | } |
---|
[488] | 1094 | |
---|
[611] | 1095 | if (domain->hasArea) |
---|
[1132] | 1096 | SuperClassWriter::writeData(writtenArea, areaId, isCollective, 0, &start, &count); |
---|
[488] | 1097 | |
---|
[498] | 1098 | SuperClassWriter::definition_start(); |
---|
[488] | 1099 | |
---|
[498] | 1100 | break; |
---|
| 1101 | } |
---|
| 1102 | default : |
---|
| 1103 | ERROR("CNc4DataOutput::writeDomain(domain)", |
---|
| 1104 | << "[ type = " << SuperClass::type << "]" |
---|
| 1105 | << " not implemented yet !"); |
---|
| 1106 | } |
---|
[219] | 1107 | } |
---|
[498] | 1108 | catch (CNetCdfException& e) |
---|
| 1109 | { |
---|
| 1110 | StdString msg("On writing the domain : "); |
---|
| 1111 | msg.append(domid); msg.append("\n"); |
---|
| 1112 | msg.append("In the context : "); |
---|
| 1113 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1114 | msg.append(e.what()); |
---|
| 1115 | ERROR("CNc4DataOutput::writeUnstructuredDomain(CDomain* domain)", << msg); |
---|
| 1116 | } |
---|
[219] | 1117 | domain->addRelFile(this->filename); |
---|
| 1118 | } |
---|
| 1119 | //-------------------------------------------------------------- |
---|
| 1120 | |
---|
[347] | 1121 | void CNc4DataOutput::writeAxis_(CAxis* axis) |
---|
[219] | 1122 | { |
---|
[1025] | 1123 | CContext* context = CContext::getCurrent(); |
---|
| 1124 | |
---|
[1030] | 1125 | if (axis->IsWritten(this->filename)) return; |
---|
| 1126 | axis->checkAttributes(); |
---|
[488] | 1127 | |
---|
[1129] | 1128 | axis->computeWrittenIndex(); |
---|
| 1129 | |
---|
[1099] | 1130 | int zoom_size = (MULTI_FILE == SuperClass::type) ? axis->zoom_n |
---|
| 1131 | : axis->global_zoom_n; |
---|
| 1132 | int zoom_begin = (MULTI_FILE == SuperClass::type) ? axis->zoom_begin |
---|
| 1133 | : axis->global_zoom_begin; |
---|
| 1134 | |
---|
| 1135 | if ((0 == axis->zoom_n) && (MULTI_FILE == SuperClass::type)) return; |
---|
| 1136 | |
---|
[1030] | 1137 | std::vector<StdString> dims; |
---|
| 1138 | StdString axisid = axis->getAxisOutputName(); |
---|
| 1139 | if (isWrittenAxis(axisid)) return ; |
---|
| 1140 | else setWrittenAxis(axisid); |
---|
[705] | 1141 | |
---|
[1030] | 1142 | try |
---|
| 1143 | { |
---|
[1099] | 1144 | SuperClassWriter::addDimension(axisid, zoom_size); |
---|
[1030] | 1145 | if (axis->hasValue) |
---|
[816] | 1146 | { |
---|
[1030] | 1147 | dims.push_back(axisid); |
---|
| 1148 | SuperClassWriter::addVariable(axisid, NC_FLOAT, dims); |
---|
[219] | 1149 | |
---|
[1030] | 1150 | if (!axis->name.isEmpty()) |
---|
| 1151 | SuperClassWriter::addAttribute("name", axis->name.getValue(), &axisid); |
---|
[219] | 1152 | |
---|
[1030] | 1153 | if (!axis->standard_name.isEmpty()) |
---|
| 1154 | SuperClassWriter::addAttribute("standard_name", axis->standard_name.getValue(), &axisid); |
---|
[540] | 1155 | |
---|
[1030] | 1156 | if (!axis->long_name.isEmpty()) |
---|
| 1157 | SuperClassWriter::addAttribute("long_name", axis->long_name.getValue(), &axisid); |
---|
[219] | 1158 | |
---|
[1030] | 1159 | if (!axis->unit.isEmpty()) |
---|
| 1160 | SuperClassWriter::addAttribute("units", axis->unit.getValue(), &axisid); |
---|
[219] | 1161 | |
---|
[1030] | 1162 | if (!axis->positive.isEmpty()) |
---|
| 1163 | { |
---|
| 1164 | SuperClassWriter::addAttribute("axis", string("Z"), &axisid); |
---|
| 1165 | SuperClassWriter::addAttribute("positive", |
---|
| 1166 | (axis->positive == CAxis::positive_attr::up) ? string("up") : string("down"), |
---|
| 1167 | &axisid); |
---|
| 1168 | } |
---|
[399] | 1169 | |
---|
[1030] | 1170 | StdString axisBoundsId = axisid + "_bounds"; |
---|
| 1171 | if (!axis->bounds.isEmpty()) |
---|
| 1172 | { |
---|
| 1173 | dims.push_back("axis_nbounds"); |
---|
| 1174 | SuperClassWriter::addVariable(axisBoundsId, NC_FLOAT, dims); |
---|
| 1175 | SuperClassWriter::addAttribute("bounds", axisBoundsId, &axisid); |
---|
| 1176 | } |
---|
[488] | 1177 | |
---|
[1030] | 1178 | SuperClassWriter::definition_end(); |
---|
[816] | 1179 | |
---|
[1129] | 1180 | CArray<size_t, 1>& indexToWrite = axis->localIndexToWriteOnServer; |
---|
| 1181 | int nbWritten = indexToWrite.numElements(); |
---|
| 1182 | CArray<double,1> axis_value(indexToWrite.numElements()); |
---|
| 1183 | for (int i = 0; i < nbWritten; i++) axis_value(i) = axis->value(indexToWrite(i)); |
---|
| 1184 | CArray<double,2> axis_bounds; |
---|
| 1185 | |
---|
[1030] | 1186 | switch (SuperClass::type) |
---|
| 1187 | { |
---|
| 1188 | case MULTI_FILE: |
---|
[816] | 1189 | { |
---|
[1129] | 1190 | // CArray<double,1> axis_value(axis->zoom_n); |
---|
| 1191 | // for (int i = 0; i < axis->zoom_n; i++) axis_value(i) = axis->value(i); |
---|
[1030] | 1192 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0); |
---|
[633] | 1193 | |
---|
[1030] | 1194 | if (!axis->bounds.isEmpty()) |
---|
| 1195 | SuperClassWriter::writeData(axis->bounds, axisBoundsId, isCollective, 0); |
---|
[488] | 1196 | |
---|
[1030] | 1197 | SuperClassWriter::definition_start(); |
---|
[219] | 1198 | |
---|
[1030] | 1199 | break; |
---|
| 1200 | } |
---|
| 1201 | case ONE_FILE: |
---|
| 1202 | { |
---|
[1129] | 1203 | // CArray<double,1> axis_value(axis->zoom_n); |
---|
| 1204 | // axis_value = axis->value; |
---|
[1030] | 1205 | std::vector<StdSize> start(1), startBounds(2) ; |
---|
| 1206 | std::vector<StdSize> count(1), countBounds(2) ; |
---|
[1099] | 1207 | start[0] = startBounds[0] = zoom_begin - axis->global_zoom_begin; |
---|
| 1208 | count[0] = countBounds[0] = zoom_size; |
---|
[1030] | 1209 | startBounds[1] = 0; |
---|
| 1210 | countBounds[1] = 2; |
---|
| 1211 | SuperClassWriter::writeData(axis_value, axisid, isCollective, 0, &start, &count); |
---|
[633] | 1212 | |
---|
[1030] | 1213 | if (!axis->bounds.isEmpty()) |
---|
[1129] | 1214 | { |
---|
| 1215 | axis_bounds.resize(2, indexToWrite.numElements()); |
---|
| 1216 | for (int i = 0; i < nbWritten; ++i) |
---|
| 1217 | { |
---|
| 1218 | axis_bounds(0, i) = axis->bounds(0, int(indexToWrite(i))); |
---|
| 1219 | axis_bounds(1, i) = axis->bounds(1, int(indexToWrite(i))); |
---|
| 1220 | } |
---|
[1030] | 1221 | SuperClassWriter::writeData(axis->bounds, axisBoundsId, isCollective, 0, &startBounds, &countBounds); |
---|
[1129] | 1222 | } |
---|
[609] | 1223 | |
---|
[1030] | 1224 | SuperClassWriter::definition_start(); |
---|
[609] | 1225 | |
---|
[1030] | 1226 | break; |
---|
[816] | 1227 | } |
---|
[1030] | 1228 | default : |
---|
| 1229 | ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", |
---|
| 1230 | << "[ type = " << SuperClass::type << "]" |
---|
| 1231 | << " not implemented yet !"); |
---|
[609] | 1232 | } |
---|
| 1233 | } |
---|
[1030] | 1234 | } |
---|
| 1235 | catch (CNetCdfException& e) |
---|
| 1236 | { |
---|
| 1237 | StdString msg("On writing the axis : "); |
---|
| 1238 | msg.append(axisid); msg.append("\n"); |
---|
| 1239 | msg.append("In the context : "); |
---|
| 1240 | CContext* context = CContext::getCurrent() ; |
---|
| 1241 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1242 | msg.append(e.what()); |
---|
| 1243 | ERROR("CNc4DataOutput::writeAxis_(CAxis* axis)", << msg); |
---|
| 1244 | } |
---|
| 1245 | |
---|
[1027] | 1246 | axis->addRelFile(this->filename); |
---|
[391] | 1247 | } |
---|
[488] | 1248 | |
---|
[887] | 1249 | void CNc4DataOutput::writeScalar_(CScalar* scalar) |
---|
| 1250 | { |
---|
| 1251 | if (scalar->IsWritten(this->filename)) return; |
---|
| 1252 | scalar->checkAttributes(); |
---|
| 1253 | int scalarSize = 1; |
---|
| 1254 | |
---|
| 1255 | StdString scalaId = scalar->getScalarOutputName(); |
---|
| 1256 | if (isWrittenAxis(scalaId)) return ; |
---|
| 1257 | else setWrittenAxis(scalaId); |
---|
| 1258 | |
---|
| 1259 | try |
---|
| 1260 | { |
---|
| 1261 | if (!scalar->value.isEmpty()) |
---|
| 1262 | { |
---|
| 1263 | // dims.push_back(scalaId); |
---|
| 1264 | std::vector<StdString> dims; |
---|
| 1265 | SuperClassWriter::addVariable(scalaId, NC_FLOAT, dims); |
---|
| 1266 | |
---|
| 1267 | if (!scalar->name.isEmpty()) |
---|
| 1268 | SuperClassWriter::addAttribute("name", scalar->name.getValue(), &scalaId); |
---|
| 1269 | |
---|
| 1270 | if (!scalar->standard_name.isEmpty()) |
---|
| 1271 | SuperClassWriter::addAttribute("standard_name", scalar->standard_name.getValue(), &scalaId); |
---|
| 1272 | |
---|
| 1273 | if (!scalar->long_name.isEmpty()) |
---|
| 1274 | SuperClassWriter::addAttribute("long_name", scalar->long_name.getValue(), &scalaId); |
---|
| 1275 | |
---|
| 1276 | if (!scalar->unit.isEmpty()) |
---|
| 1277 | SuperClassWriter::addAttribute("units", scalar->unit.getValue(), &scalaId); |
---|
| 1278 | |
---|
| 1279 | SuperClassWriter::definition_end(); |
---|
| 1280 | |
---|
| 1281 | switch (SuperClass::type) |
---|
| 1282 | { |
---|
| 1283 | case MULTI_FILE: |
---|
| 1284 | { |
---|
| 1285 | CArray<double,1> scalarValue(scalarSize); |
---|
| 1286 | scalarValue(0) = scalar->value; |
---|
| 1287 | SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0); |
---|
| 1288 | SuperClassWriter::definition_start(); |
---|
| 1289 | |
---|
| 1290 | break; |
---|
| 1291 | } |
---|
| 1292 | case ONE_FILE: |
---|
| 1293 | { |
---|
| 1294 | CArray<double,1> scalarValue(scalarSize); |
---|
| 1295 | scalarValue(0) = scalar->value; |
---|
| 1296 | |
---|
| 1297 | std::vector<StdSize> start(1); |
---|
| 1298 | std::vector<StdSize> count(1); |
---|
| 1299 | start[0] = 0; |
---|
| 1300 | count[0] = 1; |
---|
| 1301 | SuperClassWriter::writeData(scalarValue, scalaId, isCollective, 0, &start, &count); |
---|
| 1302 | SuperClassWriter::definition_start(); |
---|
| 1303 | |
---|
| 1304 | break; |
---|
| 1305 | } |
---|
| 1306 | default : |
---|
| 1307 | ERROR("CNc4DataOutput::writeAxis_(CAxis* scalar)", |
---|
| 1308 | << "[ type = " << SuperClass::type << "]" |
---|
| 1309 | << " not implemented yet !"); |
---|
| 1310 | } |
---|
| 1311 | } |
---|
| 1312 | } |
---|
| 1313 | catch (CNetCdfException& e) |
---|
| 1314 | { |
---|
| 1315 | StdString msg("On writing the scalar : "); |
---|
| 1316 | msg.append(scalaId); msg.append("\n"); |
---|
| 1317 | msg.append("In the context : "); |
---|
| 1318 | CContext* context = CContext::getCurrent() ; |
---|
| 1319 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1320 | msg.append(e.what()); |
---|
| 1321 | ERROR("CNc4DataOutput::writeScalar_(CScalar* scalar)", << msg); |
---|
| 1322 | } |
---|
| 1323 | scalar->addRelFile(this->filename); |
---|
| 1324 | } |
---|
| 1325 | |
---|
[676] | 1326 | //-------------------------------------------------------------- |
---|
| 1327 | |
---|
| 1328 | void CNc4DataOutput::writeGridCompressed_(CGrid* grid) |
---|
| 1329 | { |
---|
| 1330 | if (grid->isScalarGrid() || grid->isWrittenCompressed(this->filename)) return; |
---|
| 1331 | |
---|
| 1332 | try |
---|
| 1333 | { |
---|
[887] | 1334 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[676] | 1335 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 1336 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
[887] | 1337 | std::vector<StdString> scalarList = grid->getScalarList(); |
---|
| 1338 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0; |
---|
[676] | 1339 | |
---|
| 1340 | std::vector<StdString> dims; |
---|
| 1341 | |
---|
| 1342 | if (grid->isCompressible()) |
---|
| 1343 | { |
---|
| 1344 | StdString varId = grid->getId() + "_points"; |
---|
| 1345 | |
---|
| 1346 | int nbIndexes = (SuperClass::type == MULTI_FILE) ? grid->getNumberWrittenIndexes() : grid->getTotalNumberWrittenIndexes(); |
---|
| 1347 | SuperClassWriter::addDimension(varId, nbIndexes); |
---|
| 1348 | |
---|
| 1349 | dims.push_back(varId); |
---|
| 1350 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
| 1351 | |
---|
| 1352 | StdOStringStream compress; |
---|
| 1353 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 1354 | { |
---|
[887] | 1355 | if (2 == axisDomainOrder(i)) |
---|
[676] | 1356 | { |
---|
| 1357 | CDomain* domain = CDomain::get(domainList[domainList.size() - idxDomain - 1]); |
---|
[772] | 1358 | StdString domId = domain->getDomainOutputName(); |
---|
[676] | 1359 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
| 1360 | |
---|
| 1361 | switch (domain->type) |
---|
| 1362 | { |
---|
| 1363 | case CDomain::type_attr::curvilinear: |
---|
| 1364 | compress << "y" << appendDomId << " x" << appendDomId; |
---|
| 1365 | break; |
---|
| 1366 | case CDomain::type_attr::rectilinear: |
---|
| 1367 | compress << "lat" << appendDomId << " lon" << appendDomId; |
---|
| 1368 | break; |
---|
| 1369 | case CDomain::type_attr::unstructured: |
---|
| 1370 | compress << "cell" << appendDomId; |
---|
| 1371 | break; |
---|
| 1372 | } |
---|
| 1373 | ++idxDomain; |
---|
| 1374 | } |
---|
[887] | 1375 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 1376 | { |
---|
| 1377 | CAxis* axis = CAxis::get(axisList[axisList.size() - idxAxis - 1]); |
---|
[772] | 1378 | compress << axis->getAxisOutputName(); |
---|
[676] | 1379 | ++idxAxis; |
---|
| 1380 | } |
---|
[887] | 1381 | else |
---|
| 1382 | { |
---|
| 1383 | CScalar* scalar = CScalar::get(scalarList[scalarList.size() - idxScalar - 1]); |
---|
| 1384 | compress << scalar->getScalarOutputName(); |
---|
| 1385 | ++idxScalar; |
---|
| 1386 | } |
---|
[676] | 1387 | |
---|
| 1388 | if (i != 0) compress << ' '; |
---|
| 1389 | } |
---|
| 1390 | SuperClassWriter::addAttribute("compress", compress.str(), &varId); |
---|
| 1391 | |
---|
| 1392 | grid->computeCompressedIndex(); |
---|
| 1393 | |
---|
| 1394 | CArray<int, 1> indexes(grid->getNumberWrittenIndexes()); |
---|
| 1395 | std::map<int, CArray<size_t, 1> >::const_iterator it; |
---|
| 1396 | for (it = grid->outIndexFromClient.begin(); it != grid->outIndexFromClient.end(); ++it) |
---|
| 1397 | { |
---|
| 1398 | const CArray<size_t, 1> compressedIndexes = grid->compressedOutIndexFromClient[it->first]; |
---|
| 1399 | for (int i = 0; i < it->second.numElements(); i++) |
---|
| 1400 | indexes(compressedIndexes(i)) = it->second(i); |
---|
| 1401 | } |
---|
| 1402 | |
---|
| 1403 | switch (SuperClass::type) |
---|
| 1404 | { |
---|
| 1405 | case (MULTI_FILE): |
---|
| 1406 | { |
---|
| 1407 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
| 1408 | break; |
---|
| 1409 | } |
---|
| 1410 | case (ONE_FILE): |
---|
| 1411 | { |
---|
| 1412 | if (grid->doGridHaveDataDistributed()) |
---|
| 1413 | grid->getDistributionServer()->computeGlobalIndex(indexes); |
---|
| 1414 | |
---|
| 1415 | std::vector<StdSize> start, count; |
---|
| 1416 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 1417 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 1418 | |
---|
| 1419 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
| 1420 | break; |
---|
| 1421 | } |
---|
| 1422 | } |
---|
| 1423 | } |
---|
| 1424 | else |
---|
| 1425 | { |
---|
| 1426 | for (int i = 0; i < numElement; ++i) |
---|
| 1427 | { |
---|
| 1428 | StdString varId, compress; |
---|
| 1429 | CArray<int, 1> indexes; |
---|
| 1430 | bool isDistributed; |
---|
| 1431 | StdSize nbIndexes, totalNbIndexes, offset; |
---|
| 1432 | int firstGlobalIndex; |
---|
| 1433 | |
---|
[887] | 1434 | if (2 == axisDomainOrder(i)) |
---|
[676] | 1435 | { |
---|
| 1436 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[774] | 1437 | StdString domId = domain->getDomainOutputName(); |
---|
| 1438 | |
---|
[676] | 1439 | if (!domain->isCompressible() |
---|
| 1440 | || domain->type == CDomain::type_attr::unstructured |
---|
[774] | 1441 | || domain->isWrittenCompressed(this->filename) |
---|
| 1442 | || isWrittenCompressedDomain(domId)) |
---|
[676] | 1443 | continue; |
---|
| 1444 | |
---|
| 1445 | StdString appendDomId = singleDomain ? "" : "_" + domId; |
---|
| 1446 | |
---|
| 1447 | varId = domId + "_points"; |
---|
| 1448 | switch (domain->type) |
---|
| 1449 | { |
---|
| 1450 | case CDomain::type_attr::curvilinear: |
---|
| 1451 | compress = "y" + appendDomId + " x" + appendDomId; |
---|
| 1452 | break; |
---|
| 1453 | case CDomain::type_attr::rectilinear: |
---|
| 1454 | compress = "lat" + appendDomId + " lon" + appendDomId; |
---|
| 1455 | break; |
---|
| 1456 | } |
---|
| 1457 | |
---|
| 1458 | const std::vector<int>& indexesToWrite = domain->getIndexesToWrite(); |
---|
| 1459 | indexes.resize(indexesToWrite.size()); |
---|
| 1460 | for (int n = 0; n < indexes.numElements(); ++n) |
---|
| 1461 | indexes(n) = indexesToWrite[n]; |
---|
| 1462 | |
---|
| 1463 | isDistributed = domain->isDistributed(); |
---|
| 1464 | nbIndexes = domain->getNumberWrittenIndexes(); |
---|
| 1465 | totalNbIndexes = domain->getTotalNumberWrittenIndexes(); |
---|
| 1466 | offset = domain->getOffsetWrittenIndexes(); |
---|
| 1467 | firstGlobalIndex = domain->ibegin + domain->jbegin * domain->ni_glo; |
---|
| 1468 | |
---|
| 1469 | domain->addRelFileCompressed(this->filename); |
---|
[774] | 1470 | setWrittenCompressedDomain(domId); |
---|
[676] | 1471 | ++idxDomain; |
---|
| 1472 | } |
---|
[887] | 1473 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 1474 | { |
---|
| 1475 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
[774] | 1476 | StdString axisId = axis->getAxisOutputName(); |
---|
| 1477 | |
---|
| 1478 | if (!axis->isCompressible() |
---|
| 1479 | || axis->isWrittenCompressed(this->filename) |
---|
| 1480 | || isWrittenCompressedAxis(axisId)) |
---|
[676] | 1481 | continue; |
---|
| 1482 | |
---|
| 1483 | varId = axisId + "_points"; |
---|
| 1484 | compress = axisId; |
---|
| 1485 | |
---|
| 1486 | const std::vector<int>& indexesToWrite = axis->getIndexesToWrite(); |
---|
| 1487 | indexes.resize(indexesToWrite.size()); |
---|
| 1488 | for (int n = 0; n < indexes.numElements(); ++n) |
---|
| 1489 | indexes(n) = indexesToWrite[n]; |
---|
| 1490 | |
---|
| 1491 | isDistributed = axis->isDistributed(); |
---|
| 1492 | nbIndexes = axis->getNumberWrittenIndexes(); |
---|
| 1493 | totalNbIndexes = axis->getTotalNumberWrittenIndexes(); |
---|
| 1494 | offset = axis->getOffsetWrittenIndexes(); |
---|
| 1495 | firstGlobalIndex = axis->begin; |
---|
| 1496 | |
---|
| 1497 | axis->addRelFileCompressed(this->filename); |
---|
[774] | 1498 | setWrittenCompressedAxis(axisId); |
---|
[676] | 1499 | ++idxAxis; |
---|
| 1500 | } |
---|
[887] | 1501 | else |
---|
| 1502 | { |
---|
| 1503 | } |
---|
[676] | 1504 | |
---|
| 1505 | if (!varId.empty()) |
---|
| 1506 | { |
---|
| 1507 | SuperClassWriter::addDimension(varId, (SuperClass::type == MULTI_FILE) ? nbIndexes : totalNbIndexes); |
---|
| 1508 | |
---|
| 1509 | dims.clear(); |
---|
| 1510 | dims.push_back(varId); |
---|
| 1511 | SuperClassWriter::addVariable(varId, NC_INT, dims); |
---|
| 1512 | |
---|
| 1513 | SuperClassWriter::addAttribute("compress", compress, &varId); |
---|
| 1514 | |
---|
| 1515 | switch (SuperClass::type) |
---|
| 1516 | { |
---|
| 1517 | case (MULTI_FILE): |
---|
| 1518 | { |
---|
| 1519 | indexes -= firstGlobalIndex; |
---|
| 1520 | SuperClassWriter::writeData(indexes, varId, isCollective, 0); |
---|
| 1521 | break; |
---|
| 1522 | } |
---|
| 1523 | case (ONE_FILE): |
---|
| 1524 | { |
---|
| 1525 | std::vector<StdSize> start, count; |
---|
| 1526 | start.push_back(offset); |
---|
| 1527 | count.push_back(nbIndexes); |
---|
| 1528 | |
---|
| 1529 | SuperClassWriter::writeData(indexes, varId, isCollective, 0, &start, &count); |
---|
| 1530 | break; |
---|
| 1531 | } |
---|
| 1532 | } |
---|
| 1533 | } |
---|
| 1534 | } |
---|
| 1535 | |
---|
| 1536 | if (!dims.empty()) |
---|
| 1537 | grid->computeCompressedIndex(); |
---|
| 1538 | } |
---|
| 1539 | |
---|
| 1540 | grid->addRelFileCompressed(this->filename); |
---|
| 1541 | } |
---|
| 1542 | catch (CNetCdfException& e) |
---|
| 1543 | { |
---|
| 1544 | StdString msg("On writing compressed grid : "); |
---|
| 1545 | msg.append(grid->getId()); msg.append("\n"); |
---|
| 1546 | msg.append("In the context : "); |
---|
| 1547 | CContext* context = CContext::getCurrent(); |
---|
| 1548 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1549 | msg.append(e.what()); |
---|
| 1550 | ERROR("CNc4DataOutput::writeGridCompressed_(CGrid* grid)", << msg); |
---|
| 1551 | } |
---|
| 1552 | } |
---|
| 1553 | |
---|
| 1554 | //-------------------------------------------------------------- |
---|
| 1555 | |
---|
[391] | 1556 | void CNc4DataOutput::writeTimeDimension_(void) |
---|
| 1557 | { |
---|
[498] | 1558 | try |
---|
| 1559 | { |
---|
[802] | 1560 | SuperClassWriter::addDimension(getTimeCounterName()); |
---|
[498] | 1561 | } |
---|
| 1562 | catch (CNetCdfException& e) |
---|
| 1563 | { |
---|
[614] | 1564 | StdString msg("On writing time dimension : time_couter\n"); |
---|
[498] | 1565 | msg.append("In the context : "); |
---|
| 1566 | CContext* context = CContext::getCurrent() ; |
---|
| 1567 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1568 | msg.append(e.what()); |
---|
| 1569 | ERROR("CNc4DataOutput::writeTimeDimension_(void)", << msg); |
---|
| 1570 | } |
---|
[391] | 1571 | } |
---|
[676] | 1572 | |
---|
[219] | 1573 | //-------------------------------------------------------------- |
---|
| 1574 | |
---|
[347] | 1575 | void CNc4DataOutput::writeField_(CField* field) |
---|
[219] | 1576 | { |
---|
[347] | 1577 | CContext* context = CContext::getCurrent() ; |
---|
[300] | 1578 | CContextServer* server=context->server ; |
---|
| 1579 | |
---|
[219] | 1580 | std::vector<StdString> dims, coodinates; |
---|
[347] | 1581 | CGrid* grid = field->grid; |
---|
[567] | 1582 | if (!grid->doGridHaveDataToWrite()) |
---|
| 1583 | if (SuperClass::type==MULTI_FILE) return ; |
---|
[488] | 1584 | |
---|
[887] | 1585 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
| 1586 | int numElement = axisDomainOrder.numElements(), idxDomain = 0, idxAxis = 0, idxScalar = 0; |
---|
[567] | 1587 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 1588 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
[887] | 1589 | std::vector<StdString> scalarList = grid->getScalarList(); |
---|
[219] | 1590 | |
---|
[802] | 1591 | StdString timeid = getTimeCounterName(); |
---|
[567] | 1592 | StdString dimXid,dimYid; |
---|
| 1593 | std::deque<StdString> dimIdList, dimCoordList; |
---|
[611] | 1594 | bool hasArea = false; |
---|
| 1595 | StdString cellMeasures = "area:"; |
---|
[676] | 1596 | bool compressedOutput = !field->indexed_output.isEmpty() && field->indexed_output; |
---|
[488] | 1597 | |
---|
[567] | 1598 | for (int i = 0; i < numElement; ++i) |
---|
[434] | 1599 | { |
---|
[887] | 1600 | if (2 == axisDomainOrder(i)) |
---|
[567] | 1601 | { |
---|
| 1602 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[772] | 1603 | StdString domId = domain->getDomainOutputName(); |
---|
[676] | 1604 | StdString appendDomId = singleDomain ? "" : "_" + domId ; |
---|
| 1605 | |
---|
| 1606 | if (compressedOutput && domain->isCompressible() && domain->type != CDomain::type_attr::unstructured) |
---|
| 1607 | { |
---|
| 1608 | dimIdList.push_back(domId + "_points"); |
---|
| 1609 | field->setUseCompressedOutput(); |
---|
| 1610 | } |
---|
| 1611 | |
---|
[567] | 1612 | switch (domain->type) |
---|
| 1613 | { |
---|
[676] | 1614 | case CDomain::type_attr::curvilinear: |
---|
| 1615 | if (!compressedOutput || !domain->isCompressible()) |
---|
| 1616 | { |
---|
| 1617 | dimXid = StdString("x").append(appendDomId); |
---|
| 1618 | dimIdList.push_back(dimXid); |
---|
| 1619 | dimYid = StdString("y").append(appendDomId); |
---|
| 1620 | dimIdList.push_back(dimYid); |
---|
| 1621 | } |
---|
| 1622 | dimCoordList.push_back(StdString("nav_lon").append(appendDomId)); |
---|
| 1623 | dimCoordList.push_back(StdString("nav_lat").append(appendDomId)); |
---|
[567] | 1624 | break ; |
---|
[676] | 1625 | case CDomain::type_attr::rectilinear: |
---|
| 1626 | if (!compressedOutput || !domain->isCompressible()) |
---|
| 1627 | { |
---|
| 1628 | dimXid = StdString("lon").append(appendDomId); |
---|
| 1629 | dimIdList.push_back(dimXid); |
---|
| 1630 | dimYid = StdString("lat").append(appendDomId); |
---|
| 1631 | dimIdList.push_back(dimYid); |
---|
| 1632 | } |
---|
[567] | 1633 | break ; |
---|
[676] | 1634 | case CDomain::type_attr::unstructured: |
---|
[878] | 1635 | { |
---|
[879] | 1636 | if (SuperClassWriter::useCFConvention) |
---|
| 1637 | { |
---|
| 1638 | dimXid = StdString("cell").append(appendDomId); |
---|
| 1639 | dimIdList.push_back(dimXid); |
---|
| 1640 | dimCoordList.push_back(StdString("lon").append(appendDomId)); |
---|
| 1641 | dimCoordList.push_back(StdString("lat").append(appendDomId)); |
---|
| 1642 | } |
---|
| 1643 | else |
---|
| 1644 | { |
---|
| 1645 | StdString domainName = domain->name; |
---|
| 1646 | if (domain->nvertex == 1) |
---|
| 1647 | { |
---|
| 1648 | dimXid = "n" + domainName + "_node"; |
---|
| 1649 | dimIdList.push_back(dimXid); |
---|
| 1650 | dimCoordList.push_back(StdString(domainName + "_node_x")); |
---|
| 1651 | dimCoordList.push_back(StdString(domainName + "_node_y")); |
---|
| 1652 | } |
---|
| 1653 | else if (domain->nvertex == 2) |
---|
| 1654 | { |
---|
| 1655 | dimXid = "n" + domainName + "_edge"; |
---|
| 1656 | dimIdList.push_back(dimXid); |
---|
| 1657 | dimCoordList.push_back(StdString(domainName + "_edge_x")); |
---|
| 1658 | dimCoordList.push_back(StdString(domainName + "_edge_y")); |
---|
| 1659 | } |
---|
| 1660 | else |
---|
| 1661 | { |
---|
| 1662 | dimXid = "n" + domainName + "_face"; |
---|
| 1663 | dimIdList.push_back(dimXid); |
---|
| 1664 | dimCoordList.push_back(StdString(domainName + "_face_x")); |
---|
| 1665 | dimCoordList.push_back(StdString(domainName + "_face_y")); |
---|
| 1666 | } |
---|
| 1667 | } // ugrid convention |
---|
| 1668 | } // case unstructured domain |
---|
[676] | 1669 | } |
---|
[878] | 1670 | |
---|
[676] | 1671 | if (domain->hasArea) |
---|
| 1672 | { |
---|
| 1673 | hasArea = true; |
---|
| 1674 | cellMeasures += " area" + appendDomId; |
---|
| 1675 | } |
---|
| 1676 | ++idxDomain; |
---|
[567] | 1677 | } |
---|
[887] | 1678 | else if (1 == axisDomainOrder(i)) |
---|
[567] | 1679 | { |
---|
| 1680 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
[772] | 1681 | StdString axisId = axis->getAxisOutputName(); |
---|
[676] | 1682 | |
---|
| 1683 | if (compressedOutput && axis->isCompressible()) |
---|
| 1684 | { |
---|
| 1685 | dimIdList.push_back(axisId + "_points"); |
---|
| 1686 | field->setUseCompressedOutput(); |
---|
| 1687 | } |
---|
| 1688 | else |
---|
| 1689 | dimIdList.push_back(axisId); |
---|
| 1690 | |
---|
| 1691 | dimCoordList.push_back(axisId); |
---|
| 1692 | ++idxAxis; |
---|
[567] | 1693 | } |
---|
[887] | 1694 | else // scalar |
---|
| 1695 | { |
---|
| 1696 | /* Do nothing here */ |
---|
| 1697 | } |
---|
[567] | 1698 | } |
---|
[488] | 1699 | |
---|
| 1700 | /* |
---|
[300] | 1701 | StdString lonid_loc = (server->intraCommSize > 1) |
---|
[318] | 1702 | ? StdString("lon").append(appendDomid).append("_local") |
---|
[278] | 1703 | : lonid; |
---|
[300] | 1704 | StdString latid_loc = (server->intraCommSize > 1) |
---|
[318] | 1705 | ? StdString("lat").append(appendDomid).append("_local") |
---|
[278] | 1706 | : latid; |
---|
[391] | 1707 | */ |
---|
[770] | 1708 | StdString fieldid = field->getFieldOutputName(); |
---|
[219] | 1709 | |
---|
[464] | 1710 | nc_type type ; |
---|
| 1711 | if (field->prec.isEmpty()) type = NC_FLOAT ; |
---|
| 1712 | else |
---|
| 1713 | { |
---|
| 1714 | if (field->prec==2) type = NC_SHORT ; |
---|
| 1715 | else if (field->prec==4) type = NC_FLOAT ; |
---|
[488] | 1716 | else if (field->prec==8) type = NC_DOUBLE ; |
---|
[464] | 1717 | } |
---|
[488] | 1718 | |
---|
[645] | 1719 | bool wtime = !(!field->operation.isEmpty() && field->getOperationTimeType() == func::CFunctor::once); |
---|
[488] | 1720 | |
---|
[219] | 1721 | if (wtime) |
---|
| 1722 | { |
---|
[488] | 1723 | |
---|
[449] | 1724 | //StdOStringStream oss; |
---|
| 1725 | // oss << "time_" << field->operation.getValue() |
---|
| 1726 | // << "_" << field->getRelFile()->output_freq.getValue(); |
---|
[488] | 1727 | //oss |
---|
[645] | 1728 | if (field->getOperationTimeType() == func::CFunctor::instant) coodinates.push_back(string("time_instant")); |
---|
| 1729 | else if (field->getOperationTimeType() == func::CFunctor::centered) coodinates.push_back(string("time_centered")); |
---|
[219] | 1730 | dims.push_back(timeid); |
---|
| 1731 | } |
---|
| 1732 | |
---|
[676] | 1733 | if (compressedOutput && grid->isCompressible()) |
---|
[219] | 1734 | { |
---|
[676] | 1735 | dims.push_back(grid->getId() + "_points"); |
---|
| 1736 | field->setUseCompressedOutput(); |
---|
[219] | 1737 | } |
---|
[676] | 1738 | else |
---|
| 1739 | { |
---|
| 1740 | while (!dimIdList.empty()) |
---|
| 1741 | { |
---|
| 1742 | dims.push_back(dimIdList.back()); |
---|
| 1743 | dimIdList.pop_back(); |
---|
| 1744 | } |
---|
| 1745 | } |
---|
[219] | 1746 | |
---|
[567] | 1747 | while (!dimCoordList.empty()) |
---|
[219] | 1748 | { |
---|
[567] | 1749 | coodinates.push_back(dimCoordList.back()); |
---|
| 1750 | dimCoordList.pop_back(); |
---|
[219] | 1751 | } |
---|
| 1752 | |
---|
[498] | 1753 | try |
---|
| 1754 | { |
---|
| 1755 | SuperClassWriter::addVariable(fieldid, type, dims); |
---|
[488] | 1756 | |
---|
[498] | 1757 | if (!field->standard_name.isEmpty()) |
---|
| 1758 | SuperClassWriter::addAttribute |
---|
| 1759 | ("standard_name", field->standard_name.getValue(), &fieldid); |
---|
[219] | 1760 | |
---|
[498] | 1761 | if (!field->long_name.isEmpty()) |
---|
| 1762 | SuperClassWriter::addAttribute |
---|
| 1763 | ("long_name", field->long_name.getValue(), &fieldid); |
---|
[219] | 1764 | |
---|
[498] | 1765 | if (!field->unit.isEmpty()) |
---|
| 1766 | SuperClassWriter::addAttribute |
---|
| 1767 | ("units", field->unit.getValue(), &fieldid); |
---|
[463] | 1768 | |
---|
[498] | 1769 | if (!field->valid_min.isEmpty()) |
---|
| 1770 | SuperClassWriter::addAttribute |
---|
| 1771 | ("valid_min", field->valid_min.getValue(), &fieldid); |
---|
[463] | 1772 | |
---|
[498] | 1773 | if (!field->valid_max.isEmpty()) |
---|
| 1774 | SuperClassWriter::addAttribute |
---|
| 1775 | ("valid_max", field->valid_max.getValue(), &fieldid); |
---|
[464] | 1776 | |
---|
[498] | 1777 | if (!field->scale_factor.isEmpty()) |
---|
| 1778 | SuperClassWriter::addAttribute |
---|
| 1779 | ("scale_factor", field->scale_factor.getValue(), &fieldid); |
---|
[464] | 1780 | |
---|
[498] | 1781 | if (!field->add_offset.isEmpty()) |
---|
| 1782 | SuperClassWriter::addAttribute |
---|
| 1783 | ("add_offset", field->add_offset.getValue(), &fieldid); |
---|
[488] | 1784 | |
---|
[498] | 1785 | SuperClassWriter::addAttribute |
---|
| 1786 | ("online_operation", field->operation.getValue(), &fieldid); |
---|
[472] | 1787 | |
---|
[498] | 1788 | // write child variables as attributes |
---|
[488] | 1789 | |
---|
| 1790 | |
---|
[498] | 1791 | vector<CVariable*> listVars = field->getAllVariables() ; |
---|
| 1792 | for (vector<CVariable*>::iterator it = listVars.begin() ;it != listVars.end(); it++) writeAttribute_(*it, fieldid) ; |
---|
[472] | 1793 | |
---|
[1021] | 1794 | bool alreadyAddCellMethod = false; |
---|
| 1795 | StdString cellMethodsPrefix(""), cellMethodsSuffix(""); |
---|
| 1796 | if (!field->cell_methods.isEmpty()) |
---|
| 1797 | { |
---|
| 1798 | StdString cellMethodString = field->cell_methods; |
---|
| 1799 | if (field->cell_methods_mode.isEmpty() || |
---|
| 1800 | (CField::cell_methods_mode_attr::overwrite == field->cell_methods_mode)) |
---|
| 1801 | { |
---|
| 1802 | SuperClassWriter::addAttribute("cell_methods", cellMethodString, &fieldid); |
---|
| 1803 | alreadyAddCellMethod = true; |
---|
| 1804 | } |
---|
| 1805 | else |
---|
| 1806 | { |
---|
| 1807 | switch (field->cell_methods_mode) |
---|
| 1808 | { |
---|
| 1809 | case (CField::cell_methods_mode_attr::prefix): |
---|
| 1810 | cellMethodsPrefix = cellMethodString; |
---|
| 1811 | cellMethodsPrefix += " "; |
---|
| 1812 | break; |
---|
| 1813 | case (CField::cell_methods_mode_attr::suffix): |
---|
| 1814 | cellMethodsSuffix = " "; |
---|
| 1815 | cellMethodsSuffix += cellMethodString; |
---|
| 1816 | break; |
---|
| 1817 | case (CField::cell_methods_mode_attr::none): |
---|
| 1818 | break; |
---|
| 1819 | default: |
---|
| 1820 | break; |
---|
| 1821 | } |
---|
| 1822 | } |
---|
| 1823 | } |
---|
[488] | 1824 | |
---|
[1021] | 1825 | |
---|
[498] | 1826 | if (wtime) |
---|
| 1827 | { |
---|
[614] | 1828 | CDuration freqOp = field->freq_op.getValue(); |
---|
| 1829 | freqOp.solveTimeStep(*context->calendar); |
---|
| 1830 | StdString freqOpStr = freqOp.toStringUDUnits(); |
---|
[612] | 1831 | SuperClassWriter::addAttribute("interval_operation", freqOpStr, &fieldid); |
---|
[437] | 1832 | |
---|
[614] | 1833 | CDuration freqOut = field->getRelFile()->output_freq.getValue(); |
---|
| 1834 | freqOut.solveTimeStep(*context->calendar); |
---|
| 1835 | SuperClassWriter::addAttribute("interval_write", freqOut.toStringUDUnits(), &fieldid); |
---|
[612] | 1836 | |
---|
[1021] | 1837 | StdString cellMethods(cellMethodsPrefix + "time: "); |
---|
[612] | 1838 | if (field->operation.getValue() == "instant") cellMethods += "point"; |
---|
| 1839 | else if (field->operation.getValue() == "average") cellMethods += "mean"; |
---|
| 1840 | else if (field->operation.getValue() == "accumulate") cellMethods += "sum"; |
---|
| 1841 | else cellMethods += field->operation; |
---|
[614] | 1842 | if (freqOp.resolve(*context->calendar) != freqOut.resolve(*context->calendar)) |
---|
| 1843 | cellMethods += " (interval: " + freqOpStr + ")"; |
---|
[1021] | 1844 | cellMethods += cellMethodsSuffix; |
---|
| 1845 | if (!alreadyAddCellMethod) |
---|
| 1846 | SuperClassWriter::addAttribute("cell_methods", cellMethods, &fieldid); |
---|
[498] | 1847 | } |
---|
[488] | 1848 | |
---|
[611] | 1849 | if (hasArea) |
---|
| 1850 | SuperClassWriter::addAttribute("cell_measures", cellMeasures, &fieldid); |
---|
| 1851 | |
---|
[498] | 1852 | if (!field->default_value.isEmpty()) |
---|
| 1853 | { |
---|
| 1854 | double default_value = field->default_value.getValue(); |
---|
| 1855 | float fdefault_value = (float)default_value; |
---|
| 1856 | if (type == NC_DOUBLE) |
---|
| 1857 | SuperClassWriter::setDefaultValue(fieldid, &default_value); |
---|
| 1858 | else |
---|
| 1859 | SuperClassWriter::setDefaultValue(fieldid, &fdefault_value); |
---|
| 1860 | } |
---|
| 1861 | else |
---|
[517] | 1862 | SuperClassWriter::setDefaultValue(fieldid, (double*)NULL); |
---|
[219] | 1863 | |
---|
[606] | 1864 | if (field->compression_level.isEmpty()) |
---|
| 1865 | field->compression_level = field->file->compression_level.isEmpty() ? 0 : field->file->compression_level; |
---|
| 1866 | SuperClassWriter::setCompressionLevel(fieldid, field->compression_level); |
---|
| 1867 | |
---|
[878] | 1868 | { // Ecriture des coordonnes |
---|
[488] | 1869 | |
---|
[498] | 1870 | StdString coordstr; //boost::algorithm::join(coodinates, " ") |
---|
| 1871 | std::vector<StdString>::iterator |
---|
| 1872 | itc = coodinates.begin(), endc = coodinates.end(); |
---|
[488] | 1873 | |
---|
[498] | 1874 | for (; itc!= endc; itc++) |
---|
| 1875 | { |
---|
| 1876 | StdString & coord = *itc; |
---|
| 1877 | if (itc+1 != endc) |
---|
| 1878 | coordstr.append(coord).append(" "); |
---|
| 1879 | else coordstr.append(coord); |
---|
| 1880 | } |
---|
[219] | 1881 | |
---|
[498] | 1882 | SuperClassWriter::addAttribute("coordinates", coordstr, &fieldid); |
---|
[219] | 1883 | |
---|
[498] | 1884 | } |
---|
[219] | 1885 | } |
---|
[498] | 1886 | catch (CNetCdfException& e) |
---|
| 1887 | { |
---|
| 1888 | StdString msg("On writing field : "); |
---|
| 1889 | msg.append(fieldid); msg.append("\n"); |
---|
| 1890 | msg.append("In the context : "); |
---|
| 1891 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1892 | msg.append(e.what()); |
---|
| 1893 | ERROR("CNc4DataOutput::writeField_(CField* field)", << msg); |
---|
| 1894 | } |
---|
[879] | 1895 | } // writeField_() |
---|
[219] | 1896 | |
---|
| 1897 | //-------------------------------------------------------------- |
---|
| 1898 | |
---|
[347] | 1899 | void CNc4DataOutput::writeFile_ (CFile* file) |
---|
[219] | 1900 | { |
---|
[773] | 1901 | StdString filename = file->getFileOutputName(); |
---|
[219] | 1902 | StdString description = (!file->description.isEmpty()) |
---|
| 1903 | ? file->description.getValue() |
---|
[335] | 1904 | : StdString("Created by xios"); |
---|
[609] | 1905 | |
---|
| 1906 | singleDomain = (file->nbDomains == 1); |
---|
| 1907 | |
---|
[498] | 1908 | try |
---|
| 1909 | { |
---|
[879] | 1910 | if (SuperClassWriter::useCFConvention) |
---|
[878] | 1911 | this->writeFileAttributes(filename, description, |
---|
| 1912 | StdString("CF-1.5"), |
---|
| 1913 | StdString("An IPSL model"), |
---|
| 1914 | this->getTimeStamp()); |
---|
| 1915 | else |
---|
| 1916 | this->writeFileAttributes(filename, description, |
---|
| 1917 | StdString("UGRID"), |
---|
| 1918 | StdString("An IPSL model"), |
---|
| 1919 | this->getTimeStamp()); |
---|
[609] | 1920 | |
---|
[878] | 1921 | |
---|
[701] | 1922 | if (!appendMode) |
---|
| 1923 | SuperClassWriter::addDimension("axis_nbounds", 2); |
---|
[498] | 1924 | } |
---|
| 1925 | catch (CNetCdfException& e) |
---|
| 1926 | { |
---|
| 1927 | StdString msg("On writing file : "); |
---|
| 1928 | msg.append(filename); msg.append("\n"); |
---|
| 1929 | msg.append("In the context : "); |
---|
| 1930 | CContext* context = CContext::getCurrent() ; |
---|
| 1931 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1932 | msg.append(e.what()); |
---|
| 1933 | ERROR("CNc4DataOutput::writeFile_ (CFile* file)", << msg); |
---|
| 1934 | } |
---|
[219] | 1935 | } |
---|
[488] | 1936 | |
---|
[472] | 1937 | void CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId) |
---|
| 1938 | { |
---|
[773] | 1939 | StdString name = var->getVariableOutputName(); |
---|
[488] | 1940 | |
---|
[498] | 1941 | try |
---|
| 1942 | { |
---|
[527] | 1943 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
| 1944 | addAttribute(name, var->getData<int>(), &fieldId); |
---|
| 1945 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
| 1946 | addAttribute(name, var->getData<short int>(), &fieldId); |
---|
| 1947 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
| 1948 | addAttribute(name, var->getData<float>(), &fieldId); |
---|
| 1949 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
| 1950 | addAttribute(name, var->getData<double>(), &fieldId); |
---|
| 1951 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
| 1952 | addAttribute(name, var->getData<string>(), &fieldId); |
---|
| 1953 | else |
---|
| 1954 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", |
---|
| 1955 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
[498] | 1956 | } |
---|
| 1957 | catch (CNetCdfException& e) |
---|
| 1958 | { |
---|
| 1959 | StdString msg("On writing attributes of variable with name : "); |
---|
| 1960 | msg.append(name); msg.append("in the field "); msg.append(fieldId); msg.append("\n"); |
---|
| 1961 | msg.append("In the context : "); |
---|
| 1962 | CContext* context = CContext::getCurrent() ; |
---|
| 1963 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1964 | msg.append(e.what()); |
---|
| 1965 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var, const string& fieldId)", << msg); |
---|
| 1966 | } |
---|
[472] | 1967 | } |
---|
[488] | 1968 | |
---|
[472] | 1969 | void CNc4DataOutput::writeAttribute_ (CVariable* var) |
---|
| 1970 | { |
---|
[773] | 1971 | StdString name = var->getVariableOutputName(); |
---|
| 1972 | |
---|
[498] | 1973 | try |
---|
| 1974 | { |
---|
[527] | 1975 | if (var->type.getValue() == CVariable::type_attr::t_int || var->type.getValue() == CVariable::type_attr::t_int32) |
---|
| 1976 | addAttribute(name, var->getData<int>()); |
---|
| 1977 | else if (var->type.getValue() == CVariable::type_attr::t_int16) |
---|
| 1978 | addAttribute(name, var->getData<short int>()); |
---|
| 1979 | else if (var->type.getValue() == CVariable::type_attr::t_float) |
---|
| 1980 | addAttribute(name, var->getData<float>()); |
---|
| 1981 | else if (var->type.getValue() == CVariable::type_attr::t_double) |
---|
| 1982 | addAttribute(name, var->getData<double>()); |
---|
| 1983 | else if (var->type.getValue() == CVariable::type_attr::t_string) |
---|
| 1984 | addAttribute(name, var->getData<string>()); |
---|
| 1985 | else |
---|
| 1986 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", |
---|
| 1987 | << "Unsupported variable of type " << var->type.getStringValue()); |
---|
[498] | 1988 | } |
---|
| 1989 | catch (CNetCdfException& e) |
---|
| 1990 | { |
---|
| 1991 | StdString msg("On writing attributes of variable with name : "); |
---|
| 1992 | msg.append(name); msg.append("\n"); |
---|
| 1993 | msg.append("In the context : "); |
---|
| 1994 | CContext* context = CContext::getCurrent() ; |
---|
| 1995 | msg.append(context->getId()); msg.append("\n"); |
---|
| 1996 | msg.append(e.what()); |
---|
| 1997 | ERROR("CNc4DataOutput::writeAttribute_ (CVariable* var)", << msg); |
---|
| 1998 | } |
---|
[488] | 1999 | } |
---|
| 2000 | |
---|
[321] | 2001 | void CNc4DataOutput::syncFile_ (void) |
---|
| 2002 | { |
---|
[498] | 2003 | try |
---|
| 2004 | { |
---|
| 2005 | SuperClassWriter::sync() ; |
---|
| 2006 | } |
---|
| 2007 | catch (CNetCdfException& e) |
---|
| 2008 | { |
---|
| 2009 | StdString msg("On synchronizing the write among processes"); |
---|
| 2010 | msg.append("In the context : "); |
---|
| 2011 | CContext* context = CContext::getCurrent() ; |
---|
| 2012 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2013 | msg.append(e.what()); |
---|
| 2014 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
| 2015 | } |
---|
[321] | 2016 | } |
---|
[219] | 2017 | |
---|
[286] | 2018 | void CNc4DataOutput::closeFile_ (void) |
---|
| 2019 | { |
---|
[498] | 2020 | try |
---|
| 2021 | { |
---|
| 2022 | SuperClassWriter::close() ; |
---|
| 2023 | } |
---|
| 2024 | catch (CNetCdfException& e) |
---|
| 2025 | { |
---|
| 2026 | StdString msg("On closing file"); |
---|
| 2027 | msg.append("In the context : "); |
---|
| 2028 | CContext* context = CContext::getCurrent() ; |
---|
| 2029 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2030 | msg.append(e.what()); |
---|
| 2031 | ERROR("CNc4DataOutput::syncFile_ (void)", << msg); |
---|
| 2032 | } |
---|
| 2033 | |
---|
[286] | 2034 | } |
---|
| 2035 | |
---|
[219] | 2036 | //--------------------------------------------------------------- |
---|
| 2037 | |
---|
| 2038 | StdString CNc4DataOutput::getTimeStamp(void) const |
---|
| 2039 | { |
---|
| 2040 | const int buffer_size = 100; |
---|
| 2041 | time_t rawtime; |
---|
| 2042 | struct tm * timeinfo = NULL; |
---|
| 2043 | char buffer [buffer_size]; |
---|
| 2044 | |
---|
| 2045 | time ( &rawtime ); |
---|
| 2046 | timeinfo = localtime ( &rawtime ); |
---|
| 2047 | strftime (buffer, buffer_size, "%Y-%b-%d %H:%M:%S %Z", timeinfo); |
---|
| 2048 | |
---|
| 2049 | return (StdString(buffer)); |
---|
| 2050 | } |
---|
[488] | 2051 | |
---|
[219] | 2052 | //--------------------------------------------------------------- |
---|
[488] | 2053 | |
---|
[347] | 2054 | void CNc4DataOutput::writeFieldData_ (CField* field) |
---|
[219] | 2055 | { |
---|
[707] | 2056 | CContext* context = CContext::getCurrent(); |
---|
| 2057 | CContextServer* server = context->server; |
---|
| 2058 | CGrid* grid = field->grid; |
---|
[300] | 2059 | |
---|
[952] | 2060 | if (field->getNStep()<1) return ; |
---|
| 2061 | |
---|
[707] | 2062 | if (!grid->doGridHaveDataToWrite()) |
---|
| 2063 | if (SuperClass::type == MULTI_FILE || !isCollective) return; |
---|
[488] | 2064 | |
---|
[770] | 2065 | StdString fieldid = field->getFieldOutputName(); |
---|
[286] | 2066 | |
---|
[707] | 2067 | StdOStringStream oss; |
---|
| 2068 | string timeAxisId; |
---|
| 2069 | if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisId = "time_instant"; |
---|
| 2070 | else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisId = "time_centered"; |
---|
[488] | 2071 | |
---|
[802] | 2072 | StdString timeBoundId = getTimeCounterName() + "_bounds"; |
---|
[449] | 2073 | |
---|
[707] | 2074 | StdString timeAxisBoundId; |
---|
| 2075 | if (field->getOperationTimeType() == func::CFunctor::instant) timeAxisBoundId = "time_instant_bounds"; |
---|
| 2076 | else if (field->getOperationTimeType() == func::CFunctor::centered) timeAxisBoundId = "time_centered_bounds"; |
---|
[488] | 2077 | |
---|
[707] | 2078 | if (!field->wasWritten()) |
---|
| 2079 | { |
---|
[1021] | 2080 | if (appendMode && field->file->record_offset.isEmpty() && |
---|
| 2081 | field->getOperationTimeType() != func::CFunctor::once) |
---|
[707] | 2082 | { |
---|
| 2083 | field->resetNStep(getRecordFromTime(field->last_Write_srv) + 1); |
---|
| 2084 | } |
---|
[488] | 2085 | |
---|
[707] | 2086 | field->setWritten(); |
---|
| 2087 | } |
---|
[488] | 2088 | |
---|
| 2089 | |
---|
[707] | 2090 | CArray<double,1> time_data(1); |
---|
| 2091 | CArray<double,1> time_data_bound(2); |
---|
| 2092 | CArray<double,1> time_counter(1); |
---|
| 2093 | CArray<double,1> time_counter_bound(2); |
---|
| 2094 | |
---|
| 2095 | bool wtime = (field->getOperationTimeType() != func::CFunctor::once); |
---|
| 2096 | |
---|
[444] | 2097 | if (wtime) |
---|
| 2098 | { |
---|
[692] | 2099 | Time lastWrite = field->last_Write_srv; |
---|
| 2100 | Time lastLastWrite = field->lastlast_Write_srv; |
---|
| 2101 | |
---|
[645] | 2102 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[692] | 2103 | time_data(0) = lastWrite; |
---|
| 2104 | else if (field->getOperationTimeType() == func::CFunctor::centered) |
---|
| 2105 | time_data(0) = (lastWrite + lastLastWrite) / 2; |
---|
[488] | 2106 | |
---|
[645] | 2107 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[692] | 2108 | time_data_bound(0) = time_data_bound(1) = lastWrite; |
---|
[645] | 2109 | else if (field->getOperationTimeType() == func::CFunctor::centered) |
---|
[488] | 2110 | { |
---|
[692] | 2111 | time_data_bound(0) = lastLastWrite; |
---|
| 2112 | time_data_bound(1) = lastWrite; |
---|
[488] | 2113 | } |
---|
| 2114 | |
---|
[692] | 2115 | if (field->file->time_counter == CFile::time_counter_attr::instant) |
---|
| 2116 | time_counter(0) = lastWrite; |
---|
| 2117 | else if (field->file->time_counter == CFile::time_counter_attr::centered) |
---|
| 2118 | time_counter(0) = (lastWrite + lastLastWrite) / 2; |
---|
| 2119 | else if (field->file->time_counter == CFile::time_counter_attr::record) |
---|
| 2120 | time_counter(0) = field->getNStep() - 1; |
---|
| 2121 | |
---|
| 2122 | |
---|
| 2123 | if (field->file->time_counter == CFile::time_counter_attr::instant) |
---|
| 2124 | time_counter_bound(0) = time_counter_bound(1) = lastWrite; |
---|
| 2125 | else if (field->file->time_counter == CFile::time_counter_attr::centered) |
---|
| 2126 | { |
---|
| 2127 | time_counter_bound(0) = lastLastWrite; |
---|
| 2128 | time_counter_bound(1) = lastWrite; |
---|
| 2129 | } |
---|
| 2130 | else if (field->file->time_counter == CFile::time_counter_attr::record) |
---|
| 2131 | time_counter_bound(0) = time_counter_bound(1) = field->getNStep() - 1; |
---|
| 2132 | } |
---|
| 2133 | |
---|
[707] | 2134 | bool isRoot = (server->intraCommRank == 0); |
---|
[488] | 2135 | |
---|
[464] | 2136 | if (!field->scale_factor.isEmpty() || !field->add_offset.isEmpty()) |
---|
| 2137 | { |
---|
[707] | 2138 | double scaleFactor = 1.0; |
---|
| 2139 | double addOffset = 0.0; |
---|
| 2140 | if (!field->scale_factor.isEmpty()) scaleFactor = field->scale_factor; |
---|
| 2141 | if (!field->add_offset.isEmpty()) addOffset = field->add_offset; |
---|
| 2142 | field->scaleFactorAddOffset(scaleFactor, addOffset); |
---|
[464] | 2143 | } |
---|
[488] | 2144 | |
---|
[498] | 2145 | try |
---|
[219] | 2146 | { |
---|
[676] | 2147 | size_t writtenSize; |
---|
| 2148 | if (field->getUseCompressedOutput()) |
---|
| 2149 | writtenSize = grid->getNumberWrittenIndexes(); |
---|
| 2150 | else |
---|
| 2151 | writtenSize = grid->getWrittenDataSize(); |
---|
| 2152 | |
---|
| 2153 | CArray<double,1> fieldData(writtenSize); |
---|
[567] | 2154 | if (!field->default_value.isEmpty()) fieldData = field->default_value; |
---|
[676] | 2155 | |
---|
| 2156 | if (field->getUseCompressedOutput()) |
---|
| 2157 | field->outputCompressedField(fieldData); |
---|
| 2158 | else |
---|
| 2159 | field->outputField(fieldData); |
---|
| 2160 | |
---|
[707] | 2161 | if (!field->prec.isEmpty() && field->prec == 2) fieldData = round(fieldData); |
---|
[567] | 2162 | |
---|
| 2163 | switch (SuperClass::type) |
---|
[498] | 2164 | { |
---|
[567] | 2165 | case (MULTI_FILE) : |
---|
| 2166 | { |
---|
[692] | 2167 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1); |
---|
[567] | 2168 | if (wtime) |
---|
| 2169 | { |
---|
[692] | 2170 | SuperClassWriter::writeData(time_data, timeAxisId, isCollective, field->getNStep() - 1); |
---|
| 2171 | SuperClassWriter::writeData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1); |
---|
| 2172 | if (field->file->time_counter != CFile::time_counter_attr::none) |
---|
| 2173 | { |
---|
[802] | 2174 | SuperClassWriter::writeData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1); |
---|
[692] | 2175 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
| 2176 | SuperClassWriter::writeData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1); |
---|
| 2177 | } |
---|
[567] | 2178 | } |
---|
[707] | 2179 | break; |
---|
[567] | 2180 | } |
---|
| 2181 | case (ONE_FILE) : |
---|
| 2182 | { |
---|
[1025] | 2183 | // const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal(); |
---|
| 2184 | // const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer(); |
---|
| 2185 | // const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer(); |
---|
| 2186 | |
---|
| 2187 | // std::vector<StdSize> start, count; |
---|
| 2188 | |
---|
| 2189 | // if (field->getUseCompressedOutput()) |
---|
| 2190 | // { |
---|
| 2191 | // if (grid->isCompressible()) |
---|
| 2192 | // { |
---|
| 2193 | // start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 2194 | // count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 2195 | // } |
---|
| 2196 | // else |
---|
| 2197 | // { |
---|
| 2198 | // CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
| 2199 | // std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 2200 | // std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 2201 | // int numElement = axisDomainOrder.numElements(); |
---|
| 2202 | // int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
| 2203 | // int idx = nZoomBeginGlobal.size() - 1; |
---|
| 2204 | |
---|
| 2205 | // start.reserve(nZoomBeginGlobal.size()); |
---|
| 2206 | // count.reserve(nZoomBeginGlobal.size()); |
---|
| 2207 | |
---|
| 2208 | |
---|
| 2209 | // for (int i = numElement - 1; i >= 0; --i) |
---|
| 2210 | // { |
---|
| 2211 | // if (2 == axisDomainOrder(i)) |
---|
| 2212 | // { |
---|
| 2213 | // CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
| 2214 | |
---|
| 2215 | // if (domain->isCompressible()) |
---|
| 2216 | // { |
---|
| 2217 | // start.push_back(domain->getOffsetWrittenIndexes()); |
---|
| 2218 | // count.push_back(domain->getNumberWrittenIndexes()); |
---|
| 2219 | // idx -= 2; |
---|
| 2220 | // } |
---|
| 2221 | // else |
---|
| 2222 | // { |
---|
| 2223 | // if ((domain->type) != CDomain::type_attr::unstructured) |
---|
| 2224 | // { |
---|
| 2225 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2226 | // count.push_back(nZoomSizeServer[idx]); |
---|
| 2227 | // } |
---|
| 2228 | // --idx; |
---|
| 2229 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2230 | // count.push_back(nZoomSizeServer[idx]); |
---|
| 2231 | // --idx; |
---|
| 2232 | // } |
---|
| 2233 | // --idxDomain; |
---|
| 2234 | // } |
---|
| 2235 | // else if (1 == axisDomainOrder(i)) |
---|
| 2236 | // { |
---|
| 2237 | // CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
| 2238 | |
---|
| 2239 | // if (axis->isCompressible()) |
---|
| 2240 | // { |
---|
| 2241 | // start.push_back(axis->getOffsetWrittenIndexes()); |
---|
| 2242 | // count.push_back(axis->getNumberWrittenIndexes()); |
---|
| 2243 | // } |
---|
| 2244 | // else |
---|
| 2245 | // { |
---|
| 2246 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2247 | // count.push_back(nZoomSizeServer[idx]); |
---|
| 2248 | // } |
---|
| 2249 | |
---|
| 2250 | // --idxAxis; |
---|
| 2251 | // --idx; |
---|
| 2252 | // } |
---|
| 2253 | // } |
---|
| 2254 | // } |
---|
[676] | 2255 | const std::vector<int>& nZoomBeginGlobal = grid->getDistributionServer()->getZoomBeginGlobal(); |
---|
| 2256 | const std::vector<int>& nZoomBeginServer = grid->getDistributionServer()->getZoomBeginServer(); |
---|
| 2257 | const std::vector<int>& nZoomSizeServer = grid->getDistributionServer()->getZoomSizeServer(); |
---|
[464] | 2258 | |
---|
[676] | 2259 | std::vector<StdSize> start, count; |
---|
[464] | 2260 | |
---|
[676] | 2261 | if (field->getUseCompressedOutput()) |
---|
| 2262 | { |
---|
| 2263 | if (grid->isCompressible()) |
---|
| 2264 | { |
---|
| 2265 | start.push_back(grid->getOffsetWrittenIndexes()); |
---|
| 2266 | count.push_back(grid->getNumberWrittenIndexes()); |
---|
| 2267 | } |
---|
| 2268 | else |
---|
| 2269 | { |
---|
[887] | 2270 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[676] | 2271 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 2272 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 2273 | int numElement = axisDomainOrder.numElements(); |
---|
| 2274 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
| 2275 | int idx = nZoomBeginGlobal.size() - 1; |
---|
[464] | 2276 | |
---|
[676] | 2277 | start.reserve(nZoomBeginGlobal.size()); |
---|
| 2278 | count.reserve(nZoomBeginGlobal.size()); |
---|
| 2279 | |
---|
| 2280 | |
---|
| 2281 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 2282 | { |
---|
[887] | 2283 | if (2 == axisDomainOrder(i)) |
---|
[676] | 2284 | { |
---|
| 2285 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
| 2286 | |
---|
| 2287 | if (domain->isCompressible()) |
---|
| 2288 | { |
---|
| 2289 | start.push_back(domain->getOffsetWrittenIndexes()); |
---|
| 2290 | count.push_back(domain->getNumberWrittenIndexes()); |
---|
[710] | 2291 | idx -= 2; |
---|
[676] | 2292 | } |
---|
| 2293 | else |
---|
| 2294 | { |
---|
[710] | 2295 | if ((domain->type) != CDomain::type_attr::unstructured) |
---|
| 2296 | { |
---|
| 2297 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2298 | count.push_back(nZoomSizeServer[idx]); |
---|
| 2299 | } |
---|
| 2300 | --idx; |
---|
[676] | 2301 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2302 | count.push_back(nZoomSizeServer[idx]); |
---|
[710] | 2303 | --idx; |
---|
[676] | 2304 | } |
---|
| 2305 | --idxDomain; |
---|
| 2306 | } |
---|
[887] | 2307 | else if (1 == axisDomainOrder(i)) |
---|
[676] | 2308 | { |
---|
| 2309 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
| 2310 | |
---|
| 2311 | if (axis->isCompressible()) |
---|
| 2312 | { |
---|
| 2313 | start.push_back(axis->getOffsetWrittenIndexes()); |
---|
| 2314 | count.push_back(axis->getNumberWrittenIndexes()); |
---|
| 2315 | } |
---|
| 2316 | else |
---|
| 2317 | { |
---|
| 2318 | start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2319 | count.push_back(nZoomSizeServer[idx]); |
---|
| 2320 | } |
---|
| 2321 | |
---|
| 2322 | --idxAxis; |
---|
| 2323 | --idx; |
---|
| 2324 | } |
---|
| 2325 | } |
---|
[1025] | 2326 | } |
---|
[676] | 2327 | } |
---|
| 2328 | else |
---|
[498] | 2329 | { |
---|
[1025] | 2330 | // CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
| 2331 | // std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 2332 | // std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 2333 | // int numElement = axisDomainOrder.numElements(); |
---|
| 2334 | // int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
| 2335 | // int idx = nZoomBeginGlobal.size() - 1; |
---|
[705] | 2336 | |
---|
[1025] | 2337 | // start.reserve(nZoomBeginGlobal.size()); |
---|
| 2338 | // count.reserve(nZoomBeginGlobal.size()); |
---|
| 2339 | |
---|
| 2340 | // for (int i = numElement - 1; i >= 0; --i) |
---|
| 2341 | // { |
---|
| 2342 | // if (2 == axisDomainOrder(i)) |
---|
| 2343 | // { |
---|
| 2344 | // CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
| 2345 | // if ((domain->type) != CDomain::type_attr::unstructured) |
---|
| 2346 | // { |
---|
| 2347 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2348 | // count.push_back(nZoomSizeServer[idx]); |
---|
| 2349 | // } |
---|
| 2350 | // --idx ; |
---|
| 2351 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2352 | // count.push_back(nZoomSizeServer[idx]); |
---|
| 2353 | // --idx ; |
---|
| 2354 | // --idxDomain; |
---|
| 2355 | // } |
---|
| 2356 | // else if (1 == axisDomainOrder(i)) |
---|
| 2357 | // { |
---|
| 2358 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2359 | // count.push_back(nZoomSizeServer[idx]); |
---|
| 2360 | // --idx; |
---|
| 2361 | // } |
---|
| 2362 | // else |
---|
| 2363 | // { |
---|
| 2364 | // if (1 == axisDomainOrder.numElements()) |
---|
| 2365 | // { |
---|
| 2366 | // start.push_back(0); |
---|
| 2367 | // count.push_back(1); |
---|
| 2368 | // } |
---|
| 2369 | // --idx; |
---|
| 2370 | // } |
---|
[887] | 2371 | CArray<int,1> axisDomainOrder = grid->axis_domain_order; |
---|
[705] | 2372 | std::vector<StdString> domainList = grid->getDomainList(); |
---|
| 2373 | std::vector<StdString> axisList = grid->getAxisList(); |
---|
| 2374 | int numElement = axisDomainOrder.numElements(); |
---|
| 2375 | int idxDomain = domainList.size() - 1, idxAxis = axisList.size() - 1; |
---|
[1025] | 2376 | int idx = domainList.size() * 2 + axisList.size() - 1;// nZoomBeginGlobal.size() - 1; |
---|
[705] | 2377 | |
---|
| 2378 | start.reserve(nZoomBeginGlobal.size()); |
---|
| 2379 | count.reserve(nZoomBeginGlobal.size()); |
---|
| 2380 | |
---|
| 2381 | for (int i = numElement - 1; i >= 0; --i) |
---|
| 2382 | { |
---|
[887] | 2383 | if (2 == axisDomainOrder(i)) |
---|
[705] | 2384 | { |
---|
| 2385 | CDomain* domain = CDomain::get(domainList[idxDomain]); |
---|
[710] | 2386 | if ((domain->type) != CDomain::type_attr::unstructured) |
---|
[705] | 2387 | { |
---|
[1025] | 2388 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2389 | // count.push_back(nZoomSizeServer[idx]); |
---|
[1099] | 2390 | // start.push_back((domain->getStartWriteIndex())[idx]); |
---|
| 2391 | // count.push_back((domain->getCountWriteIndex())[idx]); |
---|
| 2392 | start.push_back(domain->zoom_jbegin - domain->global_zoom_jbegin); |
---|
| 2393 | count.push_back(domain->zoom_nj); |
---|
[705] | 2394 | } |
---|
| 2395 | --idx ; |
---|
[1025] | 2396 | // start.push_back(nZoomBeginServer[idx] - nZoomBeginGlobal[idx]); |
---|
| 2397 | // count.push_back(nZoomSizeServer[idx]); |
---|
[1099] | 2398 | // start.push_back((domain->getStartWriteIndex())[idx]); |
---|
| 2399 | // count.push_back((domain->getCountWriteIndex())[idx]); |
---|
| 2400 | start.push_back(domain->zoom_ibegin - domain->global_zoom_ibegin); |
---|
| 2401 | count.push_back(domain->zoom_ni); |
---|
[705] | 2402 | --idx ; |
---|
| 2403 | --idxDomain; |
---|
| 2404 | } |
---|
[887] | 2405 | else if (1 == axisDomainOrder(i)) |
---|
[705] | 2406 | { |
---|
[1025] | 2407 | CAxis* axis = CAxis::get(axisList[idxAxis]); |
---|
[1099] | 2408 | // start.push_back(axis->getStartWriteIndex()); |
---|
| 2409 | // count.push_back(axis->getCountWriteIndex()); |
---|
| 2410 | start.push_back(axis->zoom_begin - axis->global_zoom_begin); |
---|
| 2411 | count.push_back(axis->zoom_n); |
---|
[705] | 2412 | --idx; |
---|
[1025] | 2413 | --idxAxis; |
---|
[887] | 2414 | } |
---|
| 2415 | else |
---|
| 2416 | { |
---|
| 2417 | if (1 == axisDomainOrder.numElements()) |
---|
| 2418 | { |
---|
| 2419 | start.push_back(0); |
---|
| 2420 | count.push_back(1); |
---|
| 2421 | } |
---|
| 2422 | --idx; |
---|
| 2423 | } |
---|
[705] | 2424 | } |
---|
[498] | 2425 | } |
---|
[488] | 2426 | |
---|
[676] | 2427 | SuperClassWriter::writeData(fieldData, fieldid, isCollective, field->getNStep() - 1, &start, &count); |
---|
[586] | 2428 | if (wtime) |
---|
| 2429 | { |
---|
[692] | 2430 | SuperClassWriter::writeTimeAxisData(time_data, timeAxisId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 2431 | SuperClassWriter::writeTimeAxisData(time_data_bound, timeAxisBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 2432 | if (field->file->time_counter != CFile::time_counter_attr::none) |
---|
| 2433 | { |
---|
[802] | 2434 | SuperClassWriter::writeTimeAxisData(time_counter, getTimeCounterName(), isCollective, field->getNStep() - 1, isRoot); |
---|
[692] | 2435 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
| 2436 | SuperClassWriter::writeTimeAxisData(time_counter_bound, timeBoundId, isCollective, field->getNStep() - 1, isRoot); |
---|
| 2437 | } |
---|
[586] | 2438 | } |
---|
| 2439 | |
---|
| 2440 | break; |
---|
[286] | 2441 | } |
---|
[567] | 2442 | } |
---|
[219] | 2443 | } |
---|
[498] | 2444 | catch (CNetCdfException& e) |
---|
| 2445 | { |
---|
| 2446 | StdString msg("On writing field data: "); |
---|
| 2447 | msg.append(fieldid); msg.append("\n"); |
---|
| 2448 | msg.append("In the context : "); |
---|
| 2449 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2450 | msg.append(e.what()); |
---|
[1130] | 2451 | ERROR("CNc4DataOutput::writeFieldData_ (CField* field)", << msg); |
---|
[498] | 2452 | } |
---|
[219] | 2453 | } |
---|
| 2454 | |
---|
| 2455 | //--------------------------------------------------------------- |
---|
| 2456 | |
---|
| 2457 | void CNc4DataOutput::writeTimeAxis_ |
---|
[347] | 2458 | (CField* field, |
---|
[343] | 2459 | const boost::shared_ptr<CCalendar> cal) |
---|
[219] | 2460 | { |
---|
| 2461 | StdOStringStream oss; |
---|
[488] | 2462 | |
---|
[645] | 2463 | if (field->getOperationTimeType() == func::CFunctor::once) return ; |
---|
[488] | 2464 | |
---|
[449] | 2465 | // oss << "time_" << field->operation.getValue() |
---|
| 2466 | // << "_" << field->getRelFile()->output_freq.getValue(); |
---|
[488] | 2467 | |
---|
[449] | 2468 | // StdString axisid = oss.str(); |
---|
[645] | 2469 | // if (field->getOperationTimeType() == func::CFunctor::centered) axisid="time_centered" ; |
---|
| 2470 | // else if (field->getOperationTimeType() == func::CFunctor::instant) axisid="time_instant" ; |
---|
[219] | 2471 | |
---|
[488] | 2472 | StdString axisid("time_centered") ; |
---|
| 2473 | StdString axisBoundId("time_centered_bounds"); |
---|
[802] | 2474 | StdString timeid(getTimeCounterName()); |
---|
[614] | 2475 | StdString timeBoundId("axis_nbounds"); |
---|
[488] | 2476 | |
---|
[645] | 2477 | if (field->getOperationTimeType() == func::CFunctor::instant) |
---|
[488] | 2478 | { |
---|
| 2479 | axisid = "time_instant"; |
---|
| 2480 | axisBoundId = "time_instant_bounds"; |
---|
| 2481 | } |
---|
| 2482 | |
---|
[498] | 2483 | try |
---|
[219] | 2484 | { |
---|
[498] | 2485 | // Adding time_instant or time_centered |
---|
| 2486 | std::vector<StdString> dims; |
---|
| 2487 | dims.push_back(timeid); |
---|
| 2488 | if (!SuperClassWriter::varExist(axisid)) |
---|
| 2489 | { |
---|
| 2490 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
[488] | 2491 | |
---|
[498] | 2492 | CDate timeOrigin=cal->getTimeOrigin() ; |
---|
| 2493 | StdOStringStream oss2; |
---|
| 2494 | // oss2<<initDate.getYear()<<"-"<<initDate.getMonth()<<"-"<<initDate.getDay()<<" " |
---|
| 2495 | // <<initDate.getHour()<<"-"<<initDate.getMinute()<<"-"<<initDate.getSecond() ; |
---|
| 2496 | StdString strInitdate=oss2.str() ; |
---|
| 2497 | StdString strTimeOrigin=timeOrigin.toString() ; |
---|
| 2498 | this->writeTimeAxisAttributes |
---|
| 2499 | (axisid, cal->getType(), |
---|
| 2500 | StdString("seconds since ").append(strTimeOrigin), |
---|
| 2501 | strTimeOrigin, axisBoundId); |
---|
| 2502 | } |
---|
[219] | 2503 | |
---|
[498] | 2504 | // Adding time_instant_bounds or time_centered_bounds variables |
---|
| 2505 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
| 2506 | { |
---|
| 2507 | dims.clear() ; |
---|
| 2508 | dims.push_back(timeid); |
---|
| 2509 | dims.push_back(timeBoundId); |
---|
| 2510 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
| 2511 | } |
---|
[488] | 2512 | |
---|
[692] | 2513 | if (field->file->time_counter != CFile::time_counter_attr::none) |
---|
[498] | 2514 | { |
---|
[692] | 2515 | // Adding time_counter |
---|
[802] | 2516 | axisid = getTimeCounterName(); |
---|
| 2517 | axisBoundId = getTimeCounterName() + "_bounds"; |
---|
[692] | 2518 | dims.clear(); |
---|
| 2519 | dims.push_back(timeid); |
---|
| 2520 | if (!SuperClassWriter::varExist(axisid)) |
---|
| 2521 | { |
---|
| 2522 | SuperClassWriter::addVariable(axisid, NC_DOUBLE, dims); |
---|
| 2523 | SuperClassWriter::addAttribute("axis", string("T"), &axisid); |
---|
[488] | 2524 | |
---|
[692] | 2525 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
| 2526 | { |
---|
| 2527 | CDate timeOrigin = cal->getTimeOrigin(); |
---|
| 2528 | StdString strTimeOrigin = timeOrigin.toString(); |
---|
[498] | 2529 | |
---|
[692] | 2530 | this->writeTimeAxisAttributes(axisid, cal->getType(), |
---|
| 2531 | StdString("seconds since ").append(strTimeOrigin), |
---|
| 2532 | strTimeOrigin, axisBoundId); |
---|
| 2533 | } |
---|
| 2534 | } |
---|
| 2535 | |
---|
| 2536 | // Adding time_counter_bound dimension |
---|
| 2537 | if (field->file->time_counter != CFile::time_counter_attr::record) |
---|
| 2538 | { |
---|
| 2539 | if (!SuperClassWriter::varExist(axisBoundId)) |
---|
| 2540 | { |
---|
| 2541 | dims.clear(); |
---|
| 2542 | dims.push_back(timeid); |
---|
| 2543 | dims.push_back(timeBoundId); |
---|
| 2544 | SuperClassWriter::addVariable(axisBoundId, NC_DOUBLE, dims); |
---|
| 2545 | } |
---|
| 2546 | } |
---|
[498] | 2547 | } |
---|
[488] | 2548 | } |
---|
[498] | 2549 | catch (CNetCdfException& e) |
---|
[488] | 2550 | { |
---|
[498] | 2551 | StdString msg("On writing time axis data: "); |
---|
| 2552 | msg.append("In the context : "); |
---|
| 2553 | CContext* context = CContext::getCurrent() ; |
---|
| 2554 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2555 | msg.append(e.what()); |
---|
| 2556 | ERROR("CNc4DataOutput::writeTimeAxis_ (CField* field, \ |
---|
| 2557 | const boost::shared_ptr<CCalendar> cal)", << msg); |
---|
[488] | 2558 | } |
---|
[219] | 2559 | } |
---|
| 2560 | |
---|
| 2561 | //--------------------------------------------------------------- |
---|
[488] | 2562 | |
---|
[219] | 2563 | void CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, |
---|
| 2564 | const StdString & calendar, |
---|
| 2565 | const StdString & units, |
---|
| 2566 | const StdString & time_origin, |
---|
[488] | 2567 | const StdString & time_bounds, |
---|
[219] | 2568 | const StdString & standard_name, |
---|
[613] | 2569 | const StdString & long_name) |
---|
[219] | 2570 | { |
---|
[498] | 2571 | try |
---|
| 2572 | { |
---|
| 2573 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 2574 | SuperClassWriter::addAttribute("long_name", long_name , &axis_name); |
---|
| 2575 | SuperClassWriter::addAttribute("calendar", calendar , &axis_name); |
---|
| 2576 | SuperClassWriter::addAttribute("units", units , &axis_name); |
---|
| 2577 | SuperClassWriter::addAttribute("time_origin", time_origin , &axis_name); |
---|
| 2578 | SuperClassWriter::addAttribute("bounds", time_bounds , &axis_name); |
---|
| 2579 | } |
---|
| 2580 | catch (CNetCdfException& e) |
---|
| 2581 | { |
---|
| 2582 | StdString msg("On writing time axis Attribute: "); |
---|
| 2583 | msg.append("In the context : "); |
---|
| 2584 | CContext* context = CContext::getCurrent() ; |
---|
| 2585 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2586 | msg.append(e.what()); |
---|
| 2587 | ERROR("CNc4DataOutput::writeTimeAxisAttributes(const StdString & axis_name, \ |
---|
[613] | 2588 | const StdString & calendar,\ |
---|
| 2589 | const StdString & units, \ |
---|
| 2590 | const StdString & time_origin, \ |
---|
| 2591 | const StdString & time_bounds, \ |
---|
| 2592 | const StdString & standard_name, \ |
---|
| 2593 | const StdString & long_name)", << msg); |
---|
[498] | 2594 | } |
---|
[219] | 2595 | } |
---|
[488] | 2596 | |
---|
[219] | 2597 | //--------------------------------------------------------------- |
---|
| 2598 | |
---|
| 2599 | void CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, |
---|
| 2600 | const StdString & axis, |
---|
| 2601 | const StdString & standard_name, |
---|
| 2602 | const StdString & long_name, |
---|
| 2603 | const StdString & units, |
---|
| 2604 | const StdString & nav_model) |
---|
| 2605 | { |
---|
[498] | 2606 | try |
---|
| 2607 | { |
---|
[613] | 2608 | if (!axis.empty()) |
---|
| 2609 | SuperClassWriter::addAttribute("axis" , axis , &axis_name); |
---|
| 2610 | |
---|
[498] | 2611 | SuperClassWriter::addAttribute("standard_name", standard_name, &axis_name); |
---|
| 2612 | SuperClassWriter::addAttribute("long_name" , long_name , &axis_name); |
---|
| 2613 | SuperClassWriter::addAttribute("units" , units , &axis_name); |
---|
[973] | 2614 | // SuperClassWriter::addAttribute("nav_model" , nav_model , &axis_name); |
---|
[498] | 2615 | } |
---|
| 2616 | catch (CNetCdfException& e) |
---|
| 2617 | { |
---|
| 2618 | StdString msg("On writing Axis Attribute: "); |
---|
| 2619 | msg.append("In the context : "); |
---|
| 2620 | CContext* context = CContext::getCurrent() ; |
---|
| 2621 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2622 | msg.append(e.what()); |
---|
| 2623 | ERROR("CNc4DataOutput::writeAxisAttributes(const StdString & axis_name, \ |
---|
[613] | 2624 | const StdString & axis, \ |
---|
| 2625 | const StdString & standard_name, \ |
---|
| 2626 | const StdString & long_name, \ |
---|
| 2627 | const StdString & units, \ |
---|
| 2628 | const StdString & nav_model)", << msg); |
---|
[498] | 2629 | } |
---|
[219] | 2630 | } |
---|
| 2631 | |
---|
| 2632 | //--------------------------------------------------------------- |
---|
[488] | 2633 | |
---|
[219] | 2634 | void CNc4DataOutput::writeLocalAttributes |
---|
| 2635 | (int ibegin, int ni, int jbegin, int nj, StdString domid) |
---|
| 2636 | { |
---|
[498] | 2637 | try |
---|
| 2638 | { |
---|
[318] | 2639 | SuperClassWriter::addAttribute(StdString("ibegin").append(domid), ibegin); |
---|
| 2640 | SuperClassWriter::addAttribute(StdString("ni" ).append(domid), ni); |
---|
| 2641 | SuperClassWriter::addAttribute(StdString("jbegin").append(domid), jbegin); |
---|
| 2642 | SuperClassWriter::addAttribute(StdString("nj" ).append(domid), nj); |
---|
[498] | 2643 | } |
---|
| 2644 | catch (CNetCdfException& e) |
---|
| 2645 | { |
---|
| 2646 | StdString msg("On writing Local Attributes: "); |
---|
| 2647 | msg.append("In the context : "); |
---|
| 2648 | CContext* context = CContext::getCurrent() ; |
---|
| 2649 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2650 | msg.append(e.what()); |
---|
| 2651 | ERROR("CNc4DataOutput::writeLocalAttributes \ |
---|
| 2652 | (int ibegin, int ni, int jbegin, int nj, StdString domid)", << msg); |
---|
| 2653 | } |
---|
| 2654 | |
---|
[219] | 2655 | } |
---|
| 2656 | |
---|
[628] | 2657 | void CNc4DataOutput::writeLocalAttributes_IOIPSL(const StdString& dimXid, const StdString& dimYid, |
---|
| 2658 | int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size) |
---|
[391] | 2659 | { |
---|
| 2660 | CArray<int,1> array(2) ; |
---|
| 2661 | |
---|
[498] | 2662 | try |
---|
| 2663 | { |
---|
| 2664 | SuperClassWriter::addAttribute("DOMAIN_number_total",size ) ; |
---|
| 2665 | SuperClassWriter::addAttribute("DOMAIN_number", rank) ; |
---|
[629] | 2666 | array = SuperClassWriter::getDimension(dimXid) + 1, SuperClassWriter::getDimension(dimYid) + 1; |
---|
[498] | 2667 | SuperClassWriter::addAttribute("DOMAIN_dimensions_ids",array) ; |
---|
| 2668 | array=ni_glo,nj_glo ; |
---|
| 2669 | SuperClassWriter::addAttribute("DOMAIN_size_global", array) ; |
---|
| 2670 | array=ni,nj ; |
---|
| 2671 | SuperClassWriter::addAttribute("DOMAIN_size_local", array) ; |
---|
[819] | 2672 | array=ibegin+1,jbegin+1 ; |
---|
[498] | 2673 | SuperClassWriter::addAttribute("DOMAIN_position_first", array) ; |
---|
[819] | 2674 | array=ibegin+ni-1+1,jbegin+nj-1+1 ; |
---|
[498] | 2675 | SuperClassWriter::addAttribute("DOMAIN_position_last",array) ; |
---|
| 2676 | array=0,0 ; |
---|
| 2677 | SuperClassWriter::addAttribute("DOMAIN_halo_size_start", array) ; |
---|
| 2678 | SuperClassWriter::addAttribute("DOMAIN_halo_size_end", array); |
---|
| 2679 | SuperClassWriter::addAttribute("DOMAIN_type",string("box")) ; |
---|
| 2680 | /* |
---|
| 2681 | SuperClassWriter::addAttribute("DOMAIN_DIM_N001",string("x")) ; |
---|
| 2682 | SuperClassWriter::addAttribute("DOMAIN_DIM_N002",string("y")) ; |
---|
| 2683 | SuperClassWriter::addAttribute("DOMAIN_DIM_N003",string("axis_A")) ; |
---|
| 2684 | SuperClassWriter::addAttribute("DOMAIN_DIM_N004",string("time_counter")) ; |
---|
| 2685 | */ |
---|
| 2686 | } |
---|
| 2687 | catch (CNetCdfException& e) |
---|
| 2688 | { |
---|
[628] | 2689 | StdString msg("On writing Local Attributes IOIPSL \n"); |
---|
[498] | 2690 | msg.append("In the context : "); |
---|
| 2691 | CContext* context = CContext::getCurrent() ; |
---|
| 2692 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2693 | msg.append(e.what()); |
---|
| 2694 | ERROR("CNc4DataOutput::writeLocalAttributes_IOIPSL \ |
---|
| 2695 | (int ibegin, int ni, int jbegin, int nj, int ni_glo, int nj_glo, int rank, int size)", << msg); |
---|
| 2696 | } |
---|
[391] | 2697 | } |
---|
[219] | 2698 | //--------------------------------------------------------------- |
---|
| 2699 | |
---|
| 2700 | void CNc4DataOutput:: writeFileAttributes(const StdString & name, |
---|
| 2701 | const StdString & description, |
---|
| 2702 | const StdString & conventions, |
---|
| 2703 | const StdString & production, |
---|
| 2704 | const StdString & timeStamp) |
---|
| 2705 | { |
---|
[498] | 2706 | try |
---|
| 2707 | { |
---|
| 2708 | SuperClassWriter::addAttribute("name" , name); |
---|
| 2709 | SuperClassWriter::addAttribute("description", description); |
---|
[613] | 2710 | SuperClassWriter::addAttribute("title" , description); |
---|
| 2711 | SuperClassWriter::addAttribute("Conventions", conventions); |
---|
[498] | 2712 | SuperClassWriter::addAttribute("production" , production); |
---|
| 2713 | SuperClassWriter::addAttribute("timeStamp" , timeStamp); |
---|
| 2714 | } |
---|
| 2715 | catch (CNetCdfException& e) |
---|
| 2716 | { |
---|
| 2717 | StdString msg("On writing File Attributes \n "); |
---|
| 2718 | msg.append("In the context : "); |
---|
| 2719 | CContext* context = CContext::getCurrent() ; |
---|
| 2720 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2721 | msg.append(e.what()); |
---|
| 2722 | ERROR("CNc4DataOutput:: writeFileAttributes(const StdString & name, \ |
---|
| 2723 | const StdString & description, \ |
---|
| 2724 | const StdString & conventions, \ |
---|
| 2725 | const StdString & production, \ |
---|
| 2726 | const StdString & timeStamp)", << msg); |
---|
| 2727 | } |
---|
[219] | 2728 | } |
---|
| 2729 | |
---|
| 2730 | //--------------------------------------------------------------- |
---|
| 2731 | |
---|
| 2732 | void CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, |
---|
| 2733 | int data_dim, |
---|
| 2734 | int data_ni, |
---|
| 2735 | int data_nj, |
---|
| 2736 | int data_ibegin, |
---|
| 2737 | int data_jbegin) |
---|
| 2738 | { |
---|
[498] | 2739 | try |
---|
| 2740 | { |
---|
| 2741 | SuperClassWriter::addAttribute("data_dim" , data_dim , &mask_name); |
---|
| 2742 | SuperClassWriter::addAttribute("data_ni" , data_ni , &mask_name); |
---|
| 2743 | SuperClassWriter::addAttribute("data_nj" , data_nj , &mask_name); |
---|
| 2744 | SuperClassWriter::addAttribute("data_ibegin", data_ibegin, &mask_name); |
---|
| 2745 | SuperClassWriter::addAttribute("data_jbegin", data_jbegin, &mask_name); |
---|
| 2746 | } |
---|
| 2747 | catch (CNetCdfException& e) |
---|
| 2748 | { |
---|
| 2749 | StdString msg("On writing Mask Attributes \n "); |
---|
| 2750 | msg.append("In the context : "); |
---|
| 2751 | CContext* context = CContext::getCurrent() ; |
---|
| 2752 | msg.append(context->getId()); msg.append("\n"); |
---|
| 2753 | msg.append(e.what()); |
---|
| 2754 | ERROR("CNc4DataOutput::writeMaskAttributes(const StdString & mask_name, \ |
---|
| 2755 | int data_dim, \ |
---|
| 2756 | int data_ni, \ |
---|
| 2757 | int data_nj, \ |
---|
| 2758 | int data_ibegin, \ |
---|
| 2759 | int data_jbegin)", << msg); |
---|
| 2760 | } |
---|
[219] | 2761 | } |
---|
| 2762 | |
---|
| 2763 | ///-------------------------------------------------------------- |
---|
| 2764 | |
---|
[707] | 2765 | StdSize CNc4DataOutput::getRecordFromTime(Time time) |
---|
| 2766 | { |
---|
| 2767 | std::map<Time, StdSize>::const_iterator it = timeToRecordCache.find(time); |
---|
| 2768 | if (it == timeToRecordCache.end()) |
---|
| 2769 | { |
---|
[802] | 2770 | StdString timeAxisBoundsId(getTimeCounterName() + "_bounds"); |
---|
[707] | 2771 | if (!SuperClassWriter::varExist(timeAxisBoundsId)) |
---|
| 2772 | timeAxisBoundsId = "time_instant_bounds"; |
---|
| 2773 | |
---|
| 2774 | CArray<double,2> timeAxisBounds; |
---|
| 2775 | SuperClassWriter::getTimeAxisBounds(timeAxisBounds, timeAxisBoundsId, isCollective); |
---|
| 2776 | |
---|
| 2777 | StdSize record = 0; |
---|
| 2778 | double dtime(time); |
---|
| 2779 | for (int n = timeAxisBounds.extent(1) - 1; n >= 0; n--) |
---|
| 2780 | { |
---|
| 2781 | if (timeAxisBounds(1, n) < dtime) |
---|
| 2782 | { |
---|
| 2783 | record = n + 1; |
---|
| 2784 | break; |
---|
| 2785 | } |
---|
| 2786 | } |
---|
| 2787 | it = timeToRecordCache.insert(std::make_pair(time, record)).first; |
---|
| 2788 | } |
---|
| 2789 | return it->second; |
---|
| 2790 | } |
---|
[774] | 2791 | |
---|
| 2792 | ///-------------------------------------------------------------- |
---|
| 2793 | |
---|
| 2794 | bool CNc4DataOutput::isWrittenDomain(const std::string& domainName) const |
---|
| 2795 | { |
---|
| 2796 | return (this->writtenDomains.find(domainName) != this->writtenDomains.end()); |
---|
| 2797 | } |
---|
| 2798 | |
---|
| 2799 | bool CNc4DataOutput::isWrittenCompressedDomain(const std::string& domainName) const |
---|
| 2800 | { |
---|
| 2801 | return (this->writtenCompressedDomains.find(domainName) != this->writtenCompressedDomains.end()); |
---|
| 2802 | } |
---|
| 2803 | |
---|
| 2804 | bool CNc4DataOutput::isWrittenAxis(const std::string& axisName) const |
---|
| 2805 | { |
---|
| 2806 | return (this->writtenAxis.find(axisName) != this->writtenAxis.end()); |
---|
| 2807 | } |
---|
| 2808 | |
---|
| 2809 | bool CNc4DataOutput::isWrittenCompressedAxis(const std::string& axisName) const |
---|
| 2810 | { |
---|
| 2811 | return (this->writtenCompressedAxis.find(axisName) != this->writtenCompressedAxis.end()); |
---|
| 2812 | } |
---|
| 2813 | |
---|
[887] | 2814 | bool CNc4DataOutput::isWrittenScalar(const std::string& scalarName) const |
---|
| 2815 | { |
---|
| 2816 | return (this->writtenScalar.find(scalarName) != this->writtenScalar.end()); |
---|
| 2817 | } |
---|
| 2818 | |
---|
[774] | 2819 | void CNc4DataOutput::setWrittenDomain(const std::string& domainName) |
---|
| 2820 | { |
---|
| 2821 | this->writtenDomains.insert(domainName); |
---|
| 2822 | } |
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| 2823 | |
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| 2824 | void CNc4DataOutput::setWrittenCompressedDomain(const std::string& domainName) |
---|
| 2825 | { |
---|
| 2826 | this->writtenCompressedDomains.insert(domainName); |
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| 2827 | } |
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| 2828 | |
---|
| 2829 | void CNc4DataOutput::setWrittenAxis(const std::string& axisName) |
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| 2830 | { |
---|
| 2831 | this->writtenAxis.insert(axisName); |
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| 2832 | } |
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| 2833 | |
---|
| 2834 | void CNc4DataOutput::setWrittenCompressedAxis(const std::string& axisName) |
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| 2835 | { |
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| 2836 | this->writtenCompressedAxis.insert(axisName); |
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| 2837 | } |
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[887] | 2838 | |
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| 2839 | void CNc4DataOutput::setWrittenScalar(const std::string& scalarName) |
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| 2840 | { |
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| 2841 | this->writtenScalar.insert(scalarName); |
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| 2842 | } |
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[335] | 2843 | } // namespace xios |
---|