1 | #!/bin/bash |
---|
2 | # |
---|
3 | # BENCH launching scripts for beaufix, Meteo-France |
---|
4 | # To be modified for other machines |
---|
5 | # |
---|
6 | set -u |
---|
7 | set -vx |
---|
8 | # |
---|
9 | cores=$1 |
---|
10 | ncore_node=$2 |
---|
11 | resolution=$3 |
---|
12 | machine=$( hostname | sed -e "s/[0-9]*//g" ) |
---|
13 | ###################################################################### |
---|
14 | # |
---|
15 | # number of processes for each executable |
---|
16 | nproc_exe1=$( echo $cores | bc ) |
---|
17 | (( nproc = $nproc_exe1 )) |
---|
18 | (( nnode = $nproc / $ncore_node )) |
---|
19 | [ $nnode -lt 1 ] && nnode=1 |
---|
20 | |
---|
21 | nproc5=$( printf "%05d\n" ${nproc_exe1} ) |
---|
22 | |
---|
23 | if [ "$machine" == "beaufix" ] |
---|
24 | then |
---|
25 | |
---|
26 | cat > Log/run_bench << EOF |
---|
27 | #!/bin/bash |
---|
28 | #SBATCH --time=00:1:00 |
---|
29 | #SBATCH -p normal64 # partition/queue |
---|
30 | #SBATCH --job-name=bench # job name |
---|
31 | #SBATCH -N $nnode # number of nodes |
---|
32 | #SBATCH -n $nproc # number of procs |
---|
33 | #SBATCH -o /scratch/work/cglo315/ESIWACE/dev_r9759_HPC09_ESIWACE/tests/LBENCH_RN/EXP00/Log/job.out%j |
---|
34 | #SBATCH -e /scratch/work/cglo315/ESIWACE/dev_r9759_HPC09_ESIWACE/tests/LBENCH_RN/EXP00/Log/job.out%j |
---|
35 | #SBATCH --exclusive |
---|
36 | |
---|
37 | module unload intelmpi intel grib_api |
---|
38 | module load intel/16.1.150 intelmpi/5.1.2.150 |
---|
39 | |
---|
40 | itac=0 |
---|
41 | xpmpi=0 |
---|
42 | |
---|
43 | if [ \$xpmpi == 1 ]; then |
---|
44 | module load bullxde |
---|
45 | module load xPMPI/1.1_intelmpi |
---|
46 | fi |
---|
47 | |
---|
48 | [ \$itac == 1 ] && module load itac/2017.2.028 |
---|
49 | |
---|
50 | set -vx |
---|
51 | |
---|
52 | cd \${TMPDIR} |
---|
53 | cp /scratch/work/cglo315/ESIWACE/dev_r9759_HPC09_ESIWACE/tests/LBENCH_RN/EXP00/* . |
---|
54 | |
---|
55 | # Best decompositions BENCH-1 |
---|
56 | jpni=${cores/\**/} |
---|
57 | jpni=${cores/?*\*/} |
---|
58 | |
---|
59 | sed -e "s/jpni *=.*/jpni = \${jpni}/" -e "s/jpnj *=.*/jpnj = \${jpnj}/" namelist_cfg_orca${resolution}_like > namelist_cfg |
---|
60 | |
---|
61 | export OMP_NUM_THREADS=1 |
---|
62 | ulimit -s unlimited |
---|
63 | # |
---|
64 | if [ \$itac == 1 ]; then |
---|
65 | source /opt/softs/intel/2017/update_1/itac_latest/bin/itacvars.sh |
---|
66 | time mpirun -ordered-output -prepend-rank -trace -np $nproc_exe1 ./nemo > jobout 2>joberr |
---|
67 | else |
---|
68 | time mpirun -ordered-output -prepend-rank -np $nproc_exe1 ./nemo > jobout_${resolution}_${nproc5} |
---|
69 | fi |
---|
70 | /opt/softs/bin/ja |
---|
71 | |
---|
72 | if [ \$xpmpi == 1 ]; then |
---|
73 | module unload xPMPI/1.1_intelmpi |
---|
74 | module unload bullxde |
---|
75 | fi |
---|
76 | # |
---|
77 | EOF |
---|
78 | |
---|
79 | |
---|
80 | ###################################################################### |
---|
81 | ### |
---|
82 | ### 4. Execute the model |
---|
83 | |
---|
84 | echo 'Submitting the job to queue using sbatch' |
---|
85 | sbatch Log/run_bench |
---|
86 | squeue -u cglo315 |
---|
87 | |
---|
88 | echo 'is executed or submitted to queue.' |
---|
89 | |
---|
90 | ###################################################################### |
---|
91 | |
---|
92 | fi |
---|
93 | |
---|
94 | if [ "$machine" == "curie" ] |
---|
95 | then |
---|
96 | |
---|
97 | if [ $nproc_exe1 -lt 256 ] |
---|
98 | then |
---|
99 | timejob=10000 |
---|
100 | else |
---|
101 | timejob=1800 |
---|
102 | fi |
---|
103 | |
---|
104 | jobname=$HOME/binrun/jobbench |
---|
105 | cat > $jobname << EOF |
---|
106 | #!/bin/bash |
---|
107 | #MSUB -r jobbench${nproc5} |
---|
108 | #MSUB -n ${nproc_exe1} |
---|
109 | #MSUB -T $timejob |
---|
110 | #MSUB -e bench_${resolution}_${nproc5}_%I.eo |
---|
111 | #MSUB -o bench_${resolution}_${nproc5}_%I.eo |
---|
112 | #MSUB -j oe |
---|
113 | #MSUB -x |
---|
114 | #MSUB -q standard |
---|
115 | #MSUB -A gen6895 |
---|
116 | #========================================== |
---|
117 | set -u |
---|
118 | # |
---|
119 | |
---|
120 | cd \${BRIDGE_MSUB_PWD}/.. |
---|
121 | |
---|
122 | rsync -av --exclude="*eo" EXPREF/ EXP_${resolution}_${nproc5}/ |
---|
123 | rsync -av EXP00/nemo EXP_${resolution}_${nproc5}/nemo |
---|
124 | cd EXP_${resolution}_${nproc5}/ |
---|
125 | |
---|
126 | jpni=${cores/\**/} |
---|
127 | jpnj=${cores/?*\*/} |
---|
128 | |
---|
129 | sed -e "s/jpni *=.*/jpni = \${jpni}/" -e "s/jpnj *=.*/jpnj = \${jpnj}/" namelist_cfg_orca${resolution}_like > namelist_cfg |
---|
130 | |
---|
131 | time ccc_mprun -n \${BRIDGE_MSUB_NPROC} ./nemo > jobout_${resolution}_${nproc5} |
---|
132 | |
---|
133 | EOF |
---|
134 | |
---|
135 | ccc_msub $jobname |
---|
136 | |
---|
137 | fi |
---|