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2019-04-19:

17:25 user/nicolasmartin/Input Archives edited by nicolasmartin
(diff)
15:46 user/nicolasmartin/Input Archives edited by nicolasmartin
(diff)

2019-04-18:

19:17 user/nicolasmartin edited by nicolasmartin
(diff)
17:36 user/nicolasmartin edited by nicolasmartin
(diff)
17:00 Changeset [10884] by davestorkey

branches/2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : dynzdf, trazdf, trczdf

14:29 Changeset [10883] by davestorkey

branches/2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps: some of the ocean physics modules.

2019-04-17:

17:40 Changeset [10882] by clem

correct the comments on the units of salt fluxes that were confusing

17:40 Changeset [10881] by clem

correct the comments on the units of salt fluxes that were confusing

12:02 Changeset [10880] by davestorkey

branches/2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps:

  1. Move time indices from dom_oce.F90 to step.F90.
  2. Implement time dimension for passive tracers with independent set of time indices in trcstp.F90.
  3. Update all the traadv and trcadv modules.

2019-04-16:

14:58 Changeset [10879] by anaguiar

Changes to reinstate heat fluxes, see https://code.metoffice.gov.uk/trac/gmed/ticket/454

13:53 Changeset [10878] by andmirek

GMED 450 fix for ln_ctl

11:50 Changeset [10877] by davestorkey

branches/2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : momentum advection and dynvor modules.

10:02 Changeset [10876] by davestorkey

branches/2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : changes to top-level modules.

2019-04-15:

17:55 Changeset [10875] by andmirek

GMED 450 open solver.stat by processor 0 only

16:22 Ticket #2271 (Change units of PISCES Ndeposition data) closed by cetlod
fixed: Done in v4.0 and trunk. The input data have also been changed
15:57 Changeset [10874] by davestorkey

branches/2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : Revert all changes so far in preparation for implementation of new design.

14:34 Ticket #2272 (Uninitialised variables in PISCES) closed by cetlod
fixed
14:34 Changeset [10873] by cetlod

trunk : Initialisation of some local arrays, see ticket:2272

14:32 Changeset [10872] by cetlod

v4.0 : Initialisation of some local arrays, see ticket:2272

14:31 Ticket #2272 (Uninitialised variables in PISCES) created by cetlod
==== Context In PISCES 2 variables used to compute some ligands …
13:47 Changeset [10871] by frrh

Missing ENDIF, correct logical var name for 3.6 compatibility not 4.0

13:00 Changeset [10870] by frrh

Apply correction to tnpeo calculation including reordering of k loop
as per #1884. This version of the code reflects the vn 3.6 STABLE branch
more than the vn 4.0 trunk. Although functionality is the same, here we
include the lbc_lnk of the STABLE branch (not used in the trunk)
and the workspace allocation of zpe as a pointer rather than the trunk
version which defines zpe (and other workspace arrays) simply as normal
allocatable arrays. i.e. I've opted to reflect the STABLE branch exactly
rather than to transplant more optimal code from the trunk out of context.

12:34 Changeset [10869] by cetlod

trunk:Change units of Nitrogen deposition data in PISCES, see ticket:2271

12:32 Changeset [10868] by cetlod

v4.0:Change units of Nitrogen deposition data in PISCES, see ticket:2271

12:29 Ticket #2271 (Change units of PISCES Ndeposition data) created by cetlod
==== Context In PISCES we assume that the units of Nitrogen deposition …
10:38 Changeset [10867] by andmirek

GMED 450: find nn_timing in icbrst.F90

2019-04-12:

17:35 New topic on Beginner created by mtorresh
NEMO-FAMB-ERSEM compile
16:10 Changeset [10866] by nicolasmartin

Fix on regexp for counters and few improvments
Thanks again Simon for your attentiveness!

                                            code(ratio)   notes(ratio)   blank(ratio)     sum
release-3.4/NEMOGCM/NEMO/LIM_SRC_2          4399(62,0%)    1975(27,8%)     715(10,0%)    7089
release-3.4/NEMOGCM/NEMO/LIM_SRC_3          9045(61,7%)    4019(27,4%)    1587(10,8%)   14651
release-3.4/NEMOGCM/NEMO/NST_SRC            1675(67,9%)     358(14,5%)     432(17,5%)    2465
release-3.4/NEMOGCM/NEMO/OFF_SRC            1371(63,8%)     588(27,3%)     188( 8,7%)    2147
release-3.4/NEMOGCM/NEMO/OPA_SRC           64967(61,4%)   29926(28,3%)   10850(10,2%)  105743
release-3.4/NEMOGCM/NEMO/OPATAM_SRC        24646(60,9%)   12706(31,4%)    3108( 7,6%)   40460
release-3.4/NEMOGCM/NEMO/TOP_SRC           13939(61,6%)    5932(26,2%)    2728(12,0%)   22599
                                     sum  120042(61,5%)   55504(28,4%)   19608(10,0%)  195154
release-3.6/NEMOGCM/NEMO/LIM_SRC_2          4530(62,4%)    1991(27,4%)     733(10,1%)    7254
release-3.6/NEMOGCM/NEMO/LIM_SRC_3          7390(59,3%)    3631(29,1%)    1423(11,4%)   12444
release-3.6/NEMOGCM/NEMO/NST_SRC            3345(67,5%)    1091(22,0%)     518(10,4%)    4954
release-3.6/NEMOGCM/NEMO/OFF_SRC            1441(64,3%)     593(26,4%)     204( 9,1%)    2238
release-3.6/NEMOGCM/NEMO/OOO_SRC            3476(70,9%)     945(19,2%)     476( 9,7%)    4897
release-3.6/NEMOGCM/NEMO/OPA_SRC           78997(63,3%)   33269(26,6%)   12340( 9,9%)  124606
release-3.6/NEMOGCM/NEMO/SAS_SRC            1187(57,9%)     659(32,1%)     204( 9,9%)    2050
release-3.6/NEMOGCM/NEMO/TOP_SRC           15319(61,1%)    6823(27,2%)    2903(11,5%)   25045
                                     sum  115685(63,0%)   49002(26,7%)   18801(10,2%)  183488
release-4.0/src/ICE                         8638(58,8%)    4951(33,7%)    1094( 7,4%)   14683
release-4.0/src/NST                         4165(67,7%)    1537(25,0%)     446( 7,2%)    6148
release-4.0/src/OCE                        66946(63,9%)   29102(27,8%)    8593( 8,2%)  104641
release-4.0/src/OFF                          882(64,5%)     399(29,2%)      85( 6,2%)    1366
release-4.0/src/SAO                         2002(72,7%)     464(16,8%)     286(10,3%)    2752
release-4.0/src/SAS                         1186(60,8%)     606(31,0%)     157( 8,0%)    1949
release-4.0/src/TOP                        17069(62,3%)    7690(28,1%)    2596( 9,4%)   27355
                                     sum  100888(63,4%)   44749(28,1%)   13257( 8,3%)  158894
11:58 Changeset [10865] by smueller

Removal of redundant source code in modules bdydta and bdytides (ticket #2194)

2019-04-11:

17:32 Changeset [10864] by nicolasmartin

Add a simple script to calculate basic numbers on NEMO releases

                                            code    comm(ratio)   total
release-3.4/NEMOGCM/NEMO/LIM_SRC_2          6358    1975(23,7%)    8333
release-3.4/NEMOGCM/NEMO/LIM_SRC_3         13015    4019(23,5%)   17034
release-3.4/NEMOGCM/NEMO/NST_SRC            2071     358(14,7%)    2429
release-3.4/NEMOGCM/NEMO/OFF_SRC            1967     588(23,0%)    2555
release-3.4/NEMOGCM/NEMO/OPA_SRC           96005   29926(23,7%)  125931
release-3.4/NEMOGCM/NEMO/OPATAM_SRC        37209   12706(25,4%)   49915
release-3.4/NEMOGCM/NEMO/TOP_SRC           20111    5932(22,7%)   26043
                                   total  176736   55504(23,8%)  232240
release-3.6/NEMOGCM/NEMO/LIM_SRC_2          6552    1991(23,3%)    8543
release-3.6/NEMOGCM/NEMO/LIM_SRC_3         11200    3631(24,4%)   14831
release-3.6/NEMOGCM/NEMO/NST_SRC            4408    1091(19,8%)    5499
release-3.6/NEMOGCM/NEMO/OFF_SRC            2037     593(22,5%)    2630
release-3.6/NEMOGCM/NEMO/OOO_SRC            4495     945(17,3%)    5440
release-3.6/NEMOGCM/NEMO/OPA_SRC          113711   33269(22,6%)  146980
release-3.6/NEMOGCM/NEMO/SAS_SRC            1855     659(26,2%)    2514
release-3.6/NEMOGCM/NEMO/TOP_SRC           22371    6823(23,3%)   29194
                                   total  166629   49002(22,7%)  215631
release-4.0/src/ICE                        13721    4951(26,5%)   18672
release-4.0/src/NST                         5565    1537(21,6%)    7102
release-4.0/src/OCE                        96572   29102(23,1%)  125674
release-4.0/src/OFF                         1285     399(23,6%)    1684
release-4.0/src/SAO                         2530     464(15,4%)    2994
release-4.0/src/SAS                         1805     606(25,1%)    2411
release-4.0/src/TOP                        24789    7690(23,6%)   32479
                                   total  146267   44749(23,4%)  191016
17:26 Changelog edited by clevy
(diff)
17:11 Changeset [10863] by frrh

Correct jk starting index so that operations don't go OOB on rab_n, etc.
This at least should prevent OOB ops. Whether it's a final valid solution is
still TBA.

16:51 Changeset [10862] by frrh

Branch to fix long standing OOB ops in diaar5.F90

14:45 Changeset [10861] by smueller

Suppression of optional complex conjugation of tidal input data at open boundaries (ticket #2194)

11:35 Changeset [10860] by smueller

Relocation of the time-of-day computation in subroutine upd_tide (module tide_mod) to its callers (ticket #2194)

2019-04-10:

16:18 Ticket #2270 (segfault in sbcdcy.F90) created by andmirek
==== Context NEMO (Met Office GO8 configuration) fails with segfault in …
12:19 Changeset [10859] by kingr

Modified zdfglf.F90 to allow merge with AMM15 pkg_coupled branch.

12:08 Changeset [10858] by kingr

Creating branch to merge changes required for ocean-wave coupling in AMM15

10:16 Changeset [10857] by andmirek

fix for segfault error found by pgi compiler

2019-04-09:

17:46 Changeset [10856] by smueller

Replacement of the temporary modification of a global variable in subroutine tide_update (module tide_mod) by an alternative, local mechanism (ticket #2194)

13:32 Changeset [10855] by smueller

Simplification of subroutine tide_update (module tide_mod) by transferring variable initialisations to other subroutines (ticket #2194)

12:31 Changeset [10854] by kingr

Minor changes to allow merging with OBS branch and tr@5518.

11:04 Changeset [10853] by andmirek

ticket #2197 bugfix and change in NaN detection

2019-04-08:

23:46 pearseb_angry2.jpg attached to User Manager Plugin Pictures by pearseb
pearseb's Avatar
19:03 Changeset [10852] by smueller

Renaming of subroutine sbc_tide of module sbctide to tide_update, transfer of this subroutine to module tide_mod, removal of the emptied module sbctide, and related adjustments (ticket #2194)

15:39 Changeset [10851] by andmirek

ticket #2197 dissable diagnostics without key_iomput

15:00 Changeset [10850] by kingr

Merged updates from AMM15_v3_6_STABLE_package_collate

13:35 Changeset [10849] by andmirek

ticket #2197 for OCE ICE build without key_iomput

11:44 Changeset [10848] by andmirek

ticket #2197 add build keys

2019-04-05:

16:51 Changeset [10847] by andmirek

ticket #2197 merge dev_r10037_shlat2d: for use for ORCA1

16:48 Changeset [10846] by andmirek

ticket #2197 merge dev_r9950_old_tidal_mixing r10040: for use for ORCA25

16:43 Changeset [10845] by andmirek

ticket #2197 merge dev_r9950_GO6_mixing r10039

16:07 Changeset [10844] by andmirek

ticket #2197 merge dev_r9950_GO6_mixing r10039

16:01 Changeset [10843] by andmirek

ticket #2197 merge with dev_r9950_GO8_package at 10320

15:53 Changeset [10842] by andmirek

ticket #2197 branch for tests with OPENACC

15:14 Ticket #2269 (OBSTOOLS/sla2fb: old altimetry format) created by cbricaud
==== Context OBSTOOLS/sla2fb is used to convert aviso sla netfiles to …
14:58 Changeset [10841] by cbricaud

fix for ticket #2268

14:55 Ticket #2268 (OBSTOOLS doesn't compile) created by cbricaud
==== Context Compile OBSTOOLS for observation operator ==== Analysis …

2019-04-04:

19:09 Changeset [10840] by smueller

Simplification of initialisation of tidal-constituent parameters (module tide_mod) (ticket #2194)

18:54 Milestone 2018 release-4.0 completed
Specific milestone for 2018 to monitor selected questions related to the …
17:55 Changeset [10839] by smueller

Adjustments to enable the use of subroutine tide_init_harmonics for the initialisation of harmonic analysis of a number of tidal constituents that differs from the number of constituents selected for tidal forcing (ticket #2194)

08:36 Changeset [10838] by wayne_gaudin

Ticket #2197 - extracted versions added

08:34 Changeset [10837] by wayne_gaudin

Ticket #2197 - added version extraction to the Makefile

2019-04-03:

17:43 Changeset [10836] by smueller

Correction of the declaration of variable tide_components in subroutine dia_harm_init of module diaharm (ticket #2194)

17:22 Ticket #2267 (The compilation of the source code for harmonic analysis fails) closed by smueller
fixed: The compilation of the source code at NEMO/trunk@10835 with …
17:04 Changeset [10835] by smueller

Merge of changesets [10832] and [10833] into the trunk, see ticket #2267

16:22 Ticket #2266 (The compilation of the source code for harmonic analysis fails) closed by smueller
fixed: The proposed modification of the error message has been applied …
16:10 Changeset [10834] by wayne_gaudin

Ticket #2197 - added namelist input to the Master directory

16:04 Changeset [10833] by smueller

Further modification of an error message string in module diaharm, see changeset [10832] and ticket #2266

15:55 Changeset [10832] by smueller

Reversion of an error-message string to the version at NEMO/trunk/src/OCE/DIA/diaharm.F90@10068#L128; fix for the defect described in ticket #2266

15:44 Changeset [10831] by wayne_gaudin

Ticket #2197 - added the Master directory with code and makefile

15:28 Ticket #2267 (The compilation of the source code for harmonic analysis fails) created by smueller
==== Context The defect in the release-4.0 version of the source code …
15:25 Ticket #2266 (The compilation of the source code for harmonic analysis fails) created by smueller
==== Context The compilation of the source code for the harmonic analysis …
13:11 Changeset [10830] by smueller

Reversion of an error message in subroutine dia_harm_init of module diaharm to the version that was present prior to changeset [10425] (ticket #2194)

11:29 Changeset [10829] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : zdfphy.F90 and zdftke.F90.

09:52 wayne_gaudin_chmod.png attached to User Manager Plugin Pictures by wayne_gaudin
wayne_gaudin's Avatar
08:44 Changeset [10828] by wayne_gaudin

Updated comment ticket #2197

08:33 Changeset [10827] by wayne_gaudin

Initial comment, ticket #2197

2019-04-02:

18:08 Ticket #2265 (Misleading minimum viscosity with Smagorinsky scheme ?) created by jchanut
==== Context From ldfdyn.F90, the Laplacian Smagorinsky scheme (formula …
17:41 Changeset [10826] by smueller

Correction of a variable declaration in subroutine dia_harm_init of module diaharm (ticket #2194)

16:40 Changeset [10825] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : trazdf.F90 and dynzdf.F90

15:32 Changeset [10824] by clem

output cfl diagnostics (courant numbers) in netcdf ⇒ add cfl_cu, cfl_cv, cfl_cw

15:32 Changeset [10823] by clem

output cfl diagnostics (courant numbers) in netcdf ⇒ add cfl_cu, cfl_cv, cfl_cw

2019-04-01:

17:50 Changeset [10822] by smueller

Addition of a new type (tide_harmonics in module tide_mod), two replacements of four separate arrays for the storage of oscillation parameters by one array of variables of this new type (in modules diaharm and tide_mod), and related adjustments in various modules (bdytides, diaharm, sbctides, and tide_mod) (ticket #2194)

15:44 Changeset [10821] by hadcv

Commit simple text file to make branch visible in browser view.

15:17 Changeset [10820] by mathiot

update README (ticket #2239)

15:10 Changeset [10819] by mathiot

update README and add comments in param.cfg (ticket #2239)

2019-03-29:

18:58 Changeset [10818] by hadcv

Create directory for BPC mini app.

18:23 Changeset [10817] by smasson

trunk: report [10815] and [10816] from v4

18:19 Changeset [10816] by smasson

v4: minor fix for profsed that can be allocated but not initialized when calling iom_set_axis_attr

18:15 Changeset [10815] by smasson

v4: minor fix for compilers requiring strict F90 rules

17:50 Changeset [10814] by nicolasmartin

Add DRAFT watermark as default for the PDF export of the manual
Do not check how it looks with the HTML version

16:06 Changeset [10813] by davestorkey

UKMO/dev_r10037_vorticity_trends branch: updates/bug fixes.

15:46 Changeset [10812] by jcastill

Add again the changes that were reverted before: they are needed after all

13:54 Changeset [10811] by smueller

Replacement of the module variable used to store information about all available tidal components (variable Wave in module tide_mod) by an array used to store information about the selected components only (variable tide_components in module tide_mod), replacement of the corresponding initialisation subroutine, as well as related adjustments in various modules (bdytides, diaharm, sbctide, and tide_mod) and in one include file (tide.h90) (ticket #2194)

09:43 Changeset [10810] by davestorkey

UKMO/dev_r10037_vorticity_trends branch: commit code changes.

2019-03-28:

19:17 New reply on Beginner created by clevy
“Can not runing nemo”
16:39 New topic on News created by mathiot
[webinar] H2020 IMMERSE User Remote Workshop
10:27 Changeset [10809] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : revert a change committed by mistake in previous commit.

2019-03-27:

21:47 Ticket #2264 (typo and missing definition in namelist_ref) closed by smasson
fixed
21:36 Changeset [10808] by smasson

trunk: update namelist_ref, according to changes done in v4 in [10779] and [10807]

21:30 Changeset [10807] by smasson

v4: fix typo and missing declaration namelist_ref, see #2264

21:27 Ticket #2264 (typo and missing definition in namelist_ref) created by smasson
==== Context There is minors bugs in namelist_ref : - in namwad : …
17:55 Changeset [10806] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps branch: Latest updates. Make sure all time-dependent 3D variables are converted in previously modified modules.

17:23 Changeset [10805] by smueller

Relocation of include file tide.h90 to subdirectory src/OCE/TDE (ticket #2194)

16:51 Tag change on System Team/Agenda/2019-03-28 by nicolasmartin
Tags 2019 added
15:53 Tag change on System Team/Agenda/2019-03-28 by mathiot
Tags VC added

2019-03-26:

13:45 Changeset [10804] by cetlod

Minor bugfix in PISCES

11:46 Changeset [10803] by jcastill

Complete set of changes to use pressure read from coupling when available rather than from file

09:50 Changeset [10802] by davestorkey

2019/dev_r10721_KERNEL-02_Storkey_Coward_IMMERSE_first_steps : introduce new T/S variables and convert tracer advection routines (including calls from TOP).

2019-03-25:

23:40 Ticket #2263 (restartibility issue with bdy_dta) created by dupontf
==== Context Restartibility issue with no time-interpolation option for …
20:34 Changeset [10801] by smueller

Update of the reference namelist and of two configuration namelists to complement the namelist modification of changeset [10800] (ticket #2194)

18:19 Changeset [10800] by smueller

Renaming of two items of namelist nam_tide to bring them in line with the namelist naming convention (ticket #2194)

09:38 Changeset [10799] by davestorkey

Temporarily revert all changes to do with the time-level swapping so the
branch just does variable renaming of the 3D state variables and changes
the interfaces to the DYN and TRA routines from stp.

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