[10227] | 1 | MODULE p5zlim |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE p5zlim *** |
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[12537] | 4 | !! TOP : PISCES-QUOTA : Computes the various nutrient limitation terms |
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| 5 | !! of phytoplankton |
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[10227] | 6 | !!====================================================================== |
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| 7 | !! History : 1.0 ! 2004 (O. Aumont) Original code |
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| 8 | !! 2.0 ! 2007-12 (C. Ethe, G. Madec) F90 |
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| 9 | !! 3.4 ! 2011-04 (O. Aumont, C. Ethe) Limitation for iron modelled in quota |
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| 10 | !! 3.6 ! 2015-05 (O. Aumont) PISCES quota |
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| 11 | !!---------------------------------------------------------------------- |
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| 12 | !! p5z_lim : Compute the nutrients limitation terms |
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| 13 | !! p5z_lim_init : Read the namelist |
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| 14 | !!---------------------------------------------------------------------- |
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| 15 | USE oce_trc ! Shared ocean-passive tracers variables |
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| 16 | USE trc ! Tracers defined |
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[12537] | 17 | USE p4zlim ! Nutrient limitation |
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[10227] | 18 | USE sms_pisces ! PISCES variables |
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| 19 | USE iom ! I/O manager |
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| 20 | |
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| 21 | IMPLICIT NONE |
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| 22 | PRIVATE |
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| 23 | |
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[12537] | 24 | PUBLIC p5z_lim ! called in p4zbio.F90 |
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| 25 | PUBLIC p5z_lim_init ! called in trcsms_pisces.F90 |
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| 26 | PUBLIC p5z_lim_alloc ! called in trcini_pisces.F90 |
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[10227] | 27 | |
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| 28 | !! * Shared module variables |
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[12349] | 29 | REAL(wp), PUBLIC :: concpno3 !: NO3 half saturation for picophyto |
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| 30 | REAL(wp), PUBLIC :: concpnh4 !: NH4 half saturation for picophyto |
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| 31 | REAL(wp), PUBLIC :: concnpo4 !: PO4 half saturation for nanophyto |
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| 32 | REAL(wp), PUBLIC :: concppo4 !: PO4 half saturation for picophyto |
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| 33 | REAL(wp), PUBLIC :: concdpo4 !: PO4 half saturation for diatoms |
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| 34 | REAL(wp), PUBLIC :: concpfer !: Iron half saturation for picophyto |
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[10227] | 35 | REAL(wp), PUBLIC :: concbpo4 !: PO4 half saturation for bacteria |
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[12349] | 36 | REAL(wp), PUBLIC :: xsizepic !: Minimum size criteria for picophyto |
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| 37 | REAL(wp), PUBLIC :: xsizerp !: Size ratio for picophytoplankton |
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[10227] | 38 | REAL(wp), PUBLIC :: qfnopt !: optimal Fe quota for nanophyto |
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[12349] | 39 | REAL(wp), PUBLIC :: qfpopt !: optimal Fe quota for picophyto |
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[10227] | 40 | REAL(wp), PUBLIC :: qfdopt !: optimal Fe quota for diatoms |
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[12349] | 41 | REAL(wp), PUBLIC :: qnnmin !: minimum N quota for nanophyto |
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| 42 | REAL(wp), PUBLIC :: qnnmax !: maximum N quota for nanophyto |
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| 43 | REAL(wp), PUBLIC :: qpnmin !: minimum P quota for nanophyto |
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| 44 | REAL(wp), PUBLIC :: qpnmax !: maximum P quota for nanophyto |
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| 45 | REAL(wp), PUBLIC :: qnpmin !: minimum N quota for nanophyto |
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| 46 | REAL(wp), PUBLIC :: qnpmax !: maximum N quota for nanophyto |
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| 47 | REAL(wp), PUBLIC :: qppmin !: minimum P quota for nanophyto |
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| 48 | REAL(wp), PUBLIC :: qppmax !: maximum P quota for nanophyto |
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| 49 | REAL(wp), PUBLIC :: qndmin !: minimum N quota for diatoms |
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| 50 | REAL(wp), PUBLIC :: qndmax !: maximum N quota for diatoms |
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| 51 | REAL(wp), PUBLIC :: qpdmin !: minimum P quota for diatoms |
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| 52 | REAL(wp), PUBLIC :: qpdmax !: maximum P quota for diatoms |
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| 53 | REAL(wp), PUBLIC :: qfnmax !: maximum Fe quota for nanophyto |
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| 54 | REAL(wp), PUBLIC :: qfpmax !: maximum Fe quota for picophyto |
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| 55 | REAL(wp), PUBLIC :: qfdmax !: maximum Fe quota for diatoms |
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| 56 | REAL(wp), PUBLIC :: zpsinh4 !: respiration cost of NH4 assimilation |
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| 57 | REAL(wp), PUBLIC :: zpsino3 !: respiration cost of NO3 assimilation |
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| 58 | REAL(wp), PUBLIC :: zpsiuptk !: Mean respiration cost |
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[10227] | 59 | |
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| 60 | !!* Allometric variations of the quotas |
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| 61 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xqnnmin !: ??? |
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| 62 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xqnnmax !: ??? |
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| 63 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xqpnmin !: ??? |
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| 64 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xqpnmax !: ??? |
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| 65 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xqnpmin !: ??? |
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| 66 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xqnpmax !: ??? |
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| 67 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xqppmin !: ??? |
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| 68 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xqppmax !: ??? |
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| 69 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xqndmin !: ??? |
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| 70 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xqndmax !: ??? |
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| 71 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xqpdmin !: ??? |
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| 72 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xqpdmax !: ??? |
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| 73 | |
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[12349] | 74 | !!* Phytoplankton nutrient limitation terms |
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[12537] | 75 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xpicono3 !: Limitation of NO3 uptake by picophyto |
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| 76 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xpiconh4 !: Limitation of NH4 uptake by picophyto |
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| 77 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xpicopo4 !: Limitation of PO4 uptake by picophyto |
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| 78 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xnanodop !: Limitation of DOP uptake by nanophyto |
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| 79 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xpicodop !: Limitation of DOP uptake by picophyto |
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| 80 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xdiatdop !: Limitation of DOP uptake by diatoms |
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| 81 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xnanofer !: Limitation of Fe uptake by nanophyto |
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| 82 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xpicofer !: Limitation of Fe uptake by picophyto |
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| 83 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xdiatfer !: Limitation of Fe uptake by diatoms |
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| 84 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xlimpic !: Limitation of picophyto PP by nutrients |
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| 85 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xlimpics !: Limitation of picophyto PP by nutrients |
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| 86 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xlimphys !: Limitation of nanophyto PP by nutrients |
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| 87 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xlimdias !: Limitation of diatoms PP by nutrients |
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| 88 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xlimpfe !: Limitation of picophyto PP by Fe |
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| 89 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: fvnuptk !: Maximum potential uptake rate of nanophyto |
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| 90 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: fvpuptk !: Maximum potential uptake rate of picophyto |
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| 91 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: fvduptk !: Maximum potential uptake rate of diatoms |
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[10227] | 92 | |
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[12537] | 93 | ! Coefficient for iron limitation following Flynn and Hipkin (1999) |
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[10227] | 94 | REAL(wp) :: xcoef1 = 0.00167 / 55.85 |
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| 95 | REAL(wp) :: xcoef2 = 1.21E-5 * 14. / 55.85 / 7.625 * 0.5 * 1.5 |
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| 96 | REAL(wp) :: xcoef3 = 1.15E-4 * 14. / 55.85 / 7.625 * 0.5 |
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| 97 | !!---------------------------------------------------------------------- |
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| 98 | !! NEMO/TOP 4.0 , NEMO Consortium (2018) |
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| 99 | !! $Id: p5zlim.F90 10070 2018-08-28 14:30:54Z nicolasmartin $ |
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| 100 | !! Software governed by the CeCILL license (see ./LICENSE) |
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| 101 | !!---------------------------------------------------------------------- |
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| 102 | |
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| 103 | CONTAINS |
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| 104 | |
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| 105 | SUBROUTINE p5z_lim( kt, knt ) |
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| 106 | !!--------------------------------------------------------------------- |
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| 107 | !! *** ROUTINE p5z_lim *** |
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| 108 | !! |
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| 109 | !! ** Purpose : Compute the co-limitations by the various nutrients |
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[12349] | 110 | !! for the various phytoplankton species. Quota based |
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| 111 | !! approach. The quota model is derived from theoretical |
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| 112 | !! models proposed by Pahlow and Oschlies (2009) and |
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[12537] | 113 | !! Flynn (2001). Various adaptations from several |
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| 114 | !! publications by these authors have been also adopted. |
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[10227] | 115 | !! |
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[12349] | 116 | !! ** Method : Quota based approach. The quota model is derived from |
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| 117 | !! theoretical models by Pahlow and Oschlies (2009) and |
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| 118 | !! Flynn (2001). Various adaptations from several publications |
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| 119 | !! by these authors have been also adopted. |
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[10227] | 120 | !!--------------------------------------------------------------------- |
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| 121 | ! |
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| 122 | INTEGER, INTENT(in) :: kt, knt |
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| 123 | ! |
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| 124 | INTEGER :: ji, jj, jk |
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| 125 | REAL(wp) :: zlim1, zlim2, zlim3, zlim4, zno3, zferlim |
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| 126 | REAL(wp) :: z1_trndia, z1_trnpic, z1_trnphy, ztem1, ztem2, zetot1 |
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[12349] | 127 | REAL(wp) :: zratio, zration, zratiof, znutlim, zfalim, zzpsiuptk |
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[10227] | 128 | REAL(wp) :: zconc1d, zconc1dnh4, zconc0n, zconc0nnh4, zconc0npo4, zconc0dpo4 |
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| 129 | REAL(wp) :: zconc0p, zconc0pnh4, zconc0ppo4, zconcpfe, zconcnfe, zconcdfe |
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| 130 | REAL(wp) :: fanano, fananop, fananof, fadiat, fadiatp, fadiatf |
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| 131 | REAL(wp) :: fapico, fapicop, fapicof |
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| 132 | REAL(wp) :: zrpho, zrass, zcoef, zfuptk, zratchl |
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| 133 | REAL(wp) :: zfvn, zfvp, zfvf, zsizen, zsizep, zsized, znanochl, zpicochl, zdiatchl |
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| 134 | REAL(wp) :: zqfemn, zqfemp, zqfemd, zbactno3, zbactnh4 |
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[12349] | 135 | REAL(wp) :: zlim1f, zsizetmp |
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| 136 | REAL(wp), DIMENSION(jpi,jpj,jpk) :: xlimnpn, xlimnpp, xlimnpd |
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[10227] | 137 | !!--------------------------------------------------------------------- |
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| 138 | ! |
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| 139 | IF( ln_timing ) CALL timing_start('p5z_lim') |
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| 140 | ! |
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| 141 | zratchl = 6.0 |
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[12349] | 142 | sizena(:,:,:) = 0.0 ; sizepa(:,:,:) = 0.0 ; sizeda(:,:,:) = 0.0 |
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[10227] | 143 | ! |
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| 144 | DO jk = 1, jpkm1 |
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| 145 | DO jj = 1, jpj |
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| 146 | DO ji = 1, jpi |
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| 147 | ! |
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[12537] | 148 | ! Tuning of the iron concentration to a minimum level that |
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| 149 | ! is set to the detection limit |
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| 150 | ! -------------------------------------------------------- |
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[10227] | 151 | zno3 = trb(ji,jj,jk,jpno3) / 40.e-6 |
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| 152 | zferlim = MAX( 3e-11 * zno3 * zno3, 5e-12 ) |
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| 153 | zferlim = MIN( zferlim, 7e-11 ) |
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| 154 | trb(ji,jj,jk,jpfer) = MAX( trb(ji,jj,jk,jpfer), zferlim ) |
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| 155 | |
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[12537] | 156 | ! Computation of the Chl/C ratio of each phytoplankton group |
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| 157 | ! ---------------------------------------------------------- |
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[10227] | 158 | z1_trnphy = 1. / ( trb(ji,jj,jk,jpphy) + rtrn ) |
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| 159 | z1_trnpic = 1. / ( trb(ji,jj,jk,jppic) + rtrn ) |
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| 160 | z1_trndia = 1. / ( trb(ji,jj,jk,jpdia) + rtrn ) |
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| 161 | znanochl = trb(ji,jj,jk,jpnch) * z1_trnphy |
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| 162 | zpicochl = trb(ji,jj,jk,jppch) * z1_trnpic |
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| 163 | zdiatchl = trb(ji,jj,jk,jpdch) * z1_trndia |
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| 164 | |
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[12537] | 165 | ! Computation of a variable Ks for the different phytoplankton |
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| 166 | ! group as a function of their relative size. Allometry |
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| 167 | ! from Edwards et al. (2012) |
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| 168 | ! ------------------------------------------------------------ |
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| 169 | |
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| 170 | ! diatoms |
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[10227] | 171 | zsized = sized(ji,jj,jk)**0.81 |
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| 172 | zconcdfe = concdfer * zsized |
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| 173 | zconc1d = concdno3 * zsized |
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| 174 | zconc1dnh4 = concdnh4 * zsized |
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| 175 | zconc0dpo4 = concdpo4 * zsized |
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| 176 | |
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[12537] | 177 | ! picophytoplankton |
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[12349] | 178 | zsizep = sizep(ji,jj,jk)**0.81 |
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[10227] | 179 | zconcpfe = concpfer * zsizep |
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| 180 | zconc0p = concpno3 * zsizep |
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| 181 | zconc0pnh4 = concpnh4 * zsizep |
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| 182 | zconc0ppo4 = concppo4 * zsizep |
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| 183 | |
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[12537] | 184 | ! nanophytoplankton |
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[12349] | 185 | zsizen = sizen(ji,jj,jk)**0.81 |
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[10227] | 186 | zconcnfe = concnfer * zsizen |
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| 187 | zconc0n = concnno3 * zsizen |
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| 188 | zconc0nnh4 = concnnh4 * zsizen |
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| 189 | zconc0npo4 = concnpo4 * zsizen |
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| 190 | |
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| 191 | ! Allometric variations of the minimum and maximum quotas |
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| 192 | ! From Talmy et al. (2014) and Maranon et al. (2013) |
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| 193 | ! ------------------------------------------------------- |
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[12349] | 194 | xqnnmin(ji,jj,jk) = qnnmin * sizen(ji,jj,jk)**(-0.3) |
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[10227] | 195 | xqnnmax(ji,jj,jk) = qnnmax |
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[12349] | 196 | xqndmin(ji,jj,jk) = qndmin * sized(ji,jj,jk)**(-0.3) |
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[10227] | 197 | xqndmax(ji,jj,jk) = qndmax |
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[12349] | 198 | xqnpmin(ji,jj,jk) = qnpmin * sizep(ji,jj,jk)**(-0.48) |
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| 199 | xqnpmax(ji,jj,jk) = qnpmax * sizep(ji,jj,jk)**(-0.21) |
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[10227] | 200 | |
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| 201 | ! Computation of the optimal allocation parameters |
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[12537] | 202 | ! Based on the different papers by Pahlow et al., and |
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| 203 | ! Smith et al. |
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| 204 | ! --------------------------------------------------- |
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| 205 | |
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| 206 | ! Nanophytoplankton |
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[10227] | 207 | znutlim = MAX( trb(ji,jj,jk,jpnh4) / zconc0nnh4, & |
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| 208 | & trb(ji,jj,jk,jpno3) / zconc0n) |
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| 209 | fanano = MAX(0.01, MIN(0.99, 1. / ( SQRT(znutlim) + 1.) ) ) |
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| 210 | znutlim = trb(ji,jj,jk,jppo4) / zconc0npo4 |
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| 211 | fananop = MAX(0.01, MIN(0.99, 1. / ( SQRT(znutlim) + 1.) ) ) |
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| 212 | znutlim = biron(ji,jj,jk) / zconcnfe |
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| 213 | fananof = MAX(0.01, MIN(0.99, 1. / ( SQRT(znutlim) + 1.) ) ) |
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[12537] | 214 | |
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| 215 | ! Picophytoplankton |
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[10227] | 216 | znutlim = MAX( trb(ji,jj,jk,jpnh4) / zconc0pnh4, & |
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| 217 | & trb(ji,jj,jk,jpno3) / zconc0p) |
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| 218 | fapico = MAX(0.01, MIN(0.99, 1. / ( SQRT(znutlim) + 1.) ) ) |
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| 219 | znutlim = trb(ji,jj,jk,jppo4) / zconc0ppo4 |
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| 220 | fapicop = MAX(0.01, MIN(0.99, 1. / ( SQRT(znutlim) + 1.) ) ) |
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| 221 | znutlim = biron(ji,jj,jk) / zconcpfe |
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| 222 | fapicof = MAX(0.01, MIN(0.99, 1. / ( SQRT(znutlim) + 1.) ) ) |
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[12537] | 223 | |
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| 224 | ! Diatoms |
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[10227] | 225 | znutlim = MAX( trb(ji,jj,jk,jpnh4) / zconc1dnh4, & |
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| 226 | & trb(ji,jj,jk,jpno3) / zconc1d ) |
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| 227 | fadiat = MAX(0.01, MIN(0.99, 1. / ( SQRT(znutlim) + 1.) ) ) |
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| 228 | znutlim = trb(ji,jj,jk,jppo4) / zconc0dpo4 |
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| 229 | fadiatp = MAX(0.01, MIN(0.99, 1. / ( SQRT(znutlim) + 1.) ) ) |
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| 230 | znutlim = biron(ji,jj,jk) / zconcdfe |
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| 231 | fadiatf = MAX(0.01, MIN(0.99, 1. / ( SQRT(znutlim) + 1.) ) ) |
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[12537] | 232 | |
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| 233 | ! Michaelis-Menten Limitation term by nutrients of |
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| 234 | ! heterotrophic bacteria |
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| 235 | ! ------------------------------------------------- |
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[10227] | 236 | zbactnh4 = trb(ji,jj,jk,jpnh4) / ( concbnh4 + trb(ji,jj,jk,jpnh4) ) |
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| 237 | zbactno3 = trb(ji,jj,jk,jpno3) / ( concbno3 + trb(ji,jj,jk,jpno3) ) * (1. - zbactnh4) |
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| 238 | ! |
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| 239 | zlim1 = zbactno3 + zbactnh4 |
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| 240 | zlim2 = trb(ji,jj,jk,jppo4) / ( trb(ji,jj,jk,jppo4) + concbpo4) |
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| 241 | zlim3 = biron(ji,jj,jk) / ( concbfe + biron(ji,jj,jk) ) |
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| 242 | zlim4 = trb(ji,jj,jk,jpdoc) / ( xkdoc + trb(ji,jj,jk,jpdoc) ) |
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[12537] | 243 | ! Xlimbac is used for DOC solubilization whereas xlimbacl |
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| 244 | ! is used for all the other bacterial-dependent terms |
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| 245 | ! ------------------------------------------------------- |
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[10227] | 246 | xlimbacl(ji,jj,jk) = MIN( zlim1, zlim2, zlim3 ) |
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| 247 | xlimbac (ji,jj,jk) = xlimbacl(ji,jj,jk) * zlim4 |
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[12537] | 248 | |
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| 249 | ! Michaelis-Menten Limitation term by nutrients: Nanophyto |
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| 250 | ! -------------------------------------------------------- |
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[10227] | 251 | ! |
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[12537] | 252 | ! Limitation of N based nutrients uptake (NO3 and NH4) |
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[10227] | 253 | zfalim = (1.-fanano) / fanano |
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| 254 | xnanonh4(ji,jj,jk) = (1. - fanano) * trb(ji,jj,jk,jpnh4) / ( zfalim * zconc0nnh4 + trb(ji,jj,jk,jpnh4) ) |
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| 255 | xnanono3(ji,jj,jk) = (1. - fanano) * trb(ji,jj,jk,jpno3) / ( zfalim * zconc0n + trb(ji,jj,jk,jpno3) ) & |
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| 256 | & * (1. - xnanonh4(ji,jj,jk)) |
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| 257 | ! |
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[12537] | 258 | ! Limitation of P based nutrients (PO4 and DOP) |
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[10227] | 259 | zfalim = (1.-fananop) / fananop |
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| 260 | xnanopo4(ji,jj,jk) = (1. - fananop) * trb(ji,jj,jk,jppo4) / ( trb(ji,jj,jk,jppo4) + zfalim * zconc0npo4 ) |
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| 261 | xnanodop(ji,jj,jk) = trb(ji,jj,jk,jpdop) / ( trb(ji,jj,jk,jpdop) + xkdoc ) & |
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| 262 | & * ( 1.0 - xnanopo4(ji,jj,jk) ) |
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| 263 | xnanodop(ji,jj,jk) = 0. |
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| 264 | ! |
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[12537] | 265 | ! Limitation of Fe uptake |
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[10227] | 266 | zfalim = (1.-fananof) / fananof |
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| 267 | xnanofer(ji,jj,jk) = (1. - fananof) * biron(ji,jj,jk) / ( biron(ji,jj,jk) + zfalim * zconcnfe ) |
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| 268 | ! |
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[12537] | 269 | ! The minimum iron quota depends on the size of PSU, respiration |
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| 270 | ! and the reduction of nitrate following the parameterization |
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| 271 | ! proposed by Flynn and Hipkin (1999) |
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[10227] | 272 | zratiof = trb(ji,jj,jk,jpnfe) * z1_trnphy |
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| 273 | zqfemn = xcoef1 * znanochl + xcoef2 + xcoef3 * xnanono3(ji,jj,jk) |
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| 274 | ! |
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| 275 | zration = trb(ji,jj,jk,jpnph) * z1_trnphy |
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[12349] | 276 | zration = MIN(xqnnmax(ji,jj,jk), MAX( xqnnmin(ji,jj,jk), zration )) |
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| 277 | zzpsiuptk = xqnnmin(ji,jj,jk) * rno3 / zpsiuptk**2 |
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| 278 | fvnuptk(ji,jj,jk) = 1. / zzpsiuptk * xqnnmin(ji,jj,jk) / (zration + rtrn) & |
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[10227] | 279 | & * MAX(0., (1. - zratchl * znanochl / 12. ) ) |
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| 280 | ! |
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[12349] | 281 | zlim1 = max(0., (zration - xqnnmin(ji,jj,jk) ) & |
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| 282 | & / (xqnnmax(ji,jj,jk) - xqnnmin(ji,jj,jk) ) ) * xqnnmax(ji,jj,jk) & |
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[10227] | 283 | & / (zration + rtrn) |
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[12537] | 284 | ! The value of the optimal quota in the formulation below |
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| 285 | ! has been found by solving a non linear equation |
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[12349] | 286 | zlim1f = max(0., ( 1.086 - xqnnmin(ji,jj,jk) ) & |
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| 287 | & / (xqnnmax(ji,jj,jk) - xqnnmin(ji,jj,jk) ) ) * xqnnmax(ji,jj,jk) |
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| 288 | zlim3 = MAX( 0.,( zratiof - zqfemn ) / qfnopt ) |
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[12537] | 289 | ! computation of the various limitation terms of nanophyto |
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| 290 | ! growth and PP |
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[12349] | 291 | xlimnfe (ji,jj,jk) = MIN( 1., zlim3 ) |
---|
| 292 | xlimphy (ji,jj,jk) = MIN( 1., zlim1, zlim3 ) |
---|
| 293 | xlimphys(ji,jj,jk) = MIN( 1., zlim1/( zlim1f + rtrn ), zlim3 ) |
---|
| 294 | xlimnpn (ji,jj,jk) = MIN( 1., zlim1) |
---|
[12537] | 295 | |
---|
| 296 | ! Michaelis-Menten Limitation term by nutrients: Picophyto |
---|
| 297 | ! -------------------------------------------------------- |
---|
[10227] | 298 | ! |
---|
[12537] | 299 | ! Limitation of N based nutrients uptake (NO3 and NH4) |
---|
[10227] | 300 | zfalim = (1.-fapico) / fapico |
---|
| 301 | xpiconh4(ji,jj,jk) = (1. - fapico) * trb(ji,jj,jk,jpnh4) / ( zfalim * zconc0pnh4 + trb(ji,jj,jk,jpnh4) ) |
---|
| 302 | xpicono3(ji,jj,jk) = (1. - fapico) * trb(ji,jj,jk,jpno3) / ( zfalim * zconc0p + trb(ji,jj,jk,jpno3) ) & |
---|
| 303 | & * (1. - xpiconh4(ji,jj,jk)) |
---|
| 304 | ! |
---|
[12537] | 305 | ! Limitation of P based nutrients uptake (PO4 and DOP) |
---|
[10227] | 306 | zfalim = (1.-fapicop) / fapicop |
---|
| 307 | xpicopo4(ji,jj,jk) = (1. - fapicop) * trb(ji,jj,jk,jppo4) / ( trb(ji,jj,jk,jppo4) + zfalim * zconc0ppo4 ) |
---|
| 308 | xpicodop(ji,jj,jk) = trb(ji,jj,jk,jpdop) / ( trb(ji,jj,jk,jpdop) + xkdoc ) & |
---|
| 309 | & * ( 1.0 - xpicopo4(ji,jj,jk) ) |
---|
| 310 | xpicodop(ji,jj,jk) = 0. |
---|
| 311 | ! |
---|
| 312 | zfalim = (1.-fapicof) / fapicof |
---|
| 313 | xpicofer(ji,jj,jk) = (1. - fapicof) * biron(ji,jj,jk) / ( biron(ji,jj,jk) + zfalim * zconcpfe ) |
---|
| 314 | ! |
---|
[12537] | 315 | ! The minimum iron quota depends on the size of PSU, respiration |
---|
| 316 | ! and the reduction of nitrate following the parameterization |
---|
| 317 | ! proposed by Flynn and Hipkin (1999) |
---|
[10227] | 318 | zratiof = trb(ji,jj,jk,jppfe) * z1_trnpic |
---|
| 319 | zqfemp = xcoef1 * zpicochl + xcoef2 + xcoef3 * xpicono3(ji,jj,jk) |
---|
| 320 | ! |
---|
| 321 | zration = trb(ji,jj,jk,jpnpi) * z1_trnpic |
---|
[12349] | 322 | zration = MIN(xqnpmax(ji,jj,jk), MAX( xqnpmin(ji,jj,jk), zration )) |
---|
| 323 | zzpsiuptk = xqnpmin(ji,jj,jk) * rno3 / zpsiuptk**2 |
---|
| 324 | fvpuptk(ji,jj,jk) = 1. / zzpsiuptk * xqnpmin(ji,jj,jk) / (zration + rtrn) & |
---|
[10227] | 325 | & * MAX(0., (1. - zratchl * zpicochl / 12. ) ) |
---|
| 326 | ! |
---|
[12349] | 327 | zlim1 = max(0., (zration - xqnpmin(ji,jj,jk) ) & |
---|
| 328 | & / (xqnpmax(ji,jj,jk) - xqnpmin(ji,jj,jk) ) ) * xqnpmax(ji,jj,jk) & |
---|
[10227] | 329 | & / (zration + rtrn) |
---|
[12537] | 330 | ! The value of the optimal quota in the formulation below |
---|
| 331 | ! has been found by solving a non linear equation |
---|
[12349] | 332 | zlim1f = max(0., (1.367 - xqnpmin(ji,jj,jk) ) & |
---|
| 333 | & / (xqnpmax(ji,jj,jk) - xqnpmin(ji,jj,jk) ) ) * xqnpmax(ji,jj,jk) |
---|
[10227] | 334 | zlim3 = MAX( 0.,( zratiof - zqfemp ) / qfpopt ) |
---|
[12537] | 335 | |
---|
| 336 | ! computation of the various limitation terms of picophyto |
---|
| 337 | ! growth and PP |
---|
[12349] | 338 | xlimpfe (ji,jj,jk) = MIN( 1., zlim3 ) |
---|
| 339 | xlimpic (ji,jj,jk) = MIN( 1., zlim1, zlim3 ) |
---|
| 340 | xlimnpp (ji,jj,jk) = MIN( 1., zlim1 ) |
---|
| 341 | xlimpics(ji,jj,jk) = MIN( 1., zlim1/( zlim1f + rtrn ), zlim3 ) |
---|
[12537] | 342 | |
---|
| 343 | ! Michaelis-Menten Limitation term by nutrients : Diatoms |
---|
| 344 | ! ------------------------------------------------------- |
---|
[10227] | 345 | ! |
---|
[12537] | 346 | ! Limitation of N based nutrients uptake (NO3 and NH4) |
---|
[10227] | 347 | zfalim = (1.-fadiat) / fadiat |
---|
| 348 | xdiatnh4(ji,jj,jk) = (1. - fadiat) * trb(ji,jj,jk,jpnh4) / ( zfalim * zconc1dnh4 + trb(ji,jj,jk,jpnh4) ) |
---|
| 349 | xdiatno3(ji,jj,jk) = (1. - fadiat) * trb(ji,jj,jk,jpno3) / ( zfalim * zconc1d + trb(ji,jj,jk,jpno3) ) & |
---|
| 350 | & * (1. - xdiatnh4(ji,jj,jk)) |
---|
| 351 | ! |
---|
[12537] | 352 | ! Limitation of P based nutrients uptake (PO4 and DOP) |
---|
[10227] | 353 | zfalim = (1.-fadiatp) / fadiatp |
---|
| 354 | xdiatpo4(ji,jj,jk) = (1. - fadiatp) * trb(ji,jj,jk,jppo4) / ( trb(ji,jj,jk,jppo4) + zfalim * zconc0dpo4 ) |
---|
| 355 | xdiatdop(ji,jj,jk) = trb(ji,jj,jk,jpdop) / ( trb(ji,jj,jk,jpdop) + xkdoc ) & |
---|
| 356 | & * ( 1.0 - xdiatpo4(ji,jj,jk) ) |
---|
| 357 | xdiatdop(ji,jj,jk) = 0. |
---|
| 358 | ! |
---|
[12537] | 359 | ! Limitation of Fe uptake |
---|
[10227] | 360 | zfalim = (1.-fadiatf) / fadiatf |
---|
| 361 | xdiatfer(ji,jj,jk) = (1. - fadiatf) * biron(ji,jj,jk) / ( biron(ji,jj,jk) + zfalim * zconcdfe ) |
---|
| 362 | ! |
---|
[12537] | 363 | ! The minimum iron quota depends on the size of PSU, respiration |
---|
| 364 | ! and the reduction of nitrate following the parameterization |
---|
| 365 | ! proposed by Flynn and Hipkin (1999) |
---|
[10227] | 366 | zratiof = trb(ji,jj,jk,jpdfe) * z1_trndia |
---|
| 367 | zqfemd = xcoef1 * zdiatchl + xcoef2 + xcoef3 * xdiatno3(ji,jj,jk) |
---|
| 368 | ! |
---|
| 369 | zration = trb(ji,jj,jk,jpndi) * z1_trndia |
---|
[12349] | 370 | zration = MIN(xqndmax(ji,jj,jk), MAX( xqndmin(ji,jj,jk), zration )) |
---|
| 371 | zzpsiuptk = xqndmin(ji,jj,jk) * rno3 / zpsiuptk**2 |
---|
| 372 | fvduptk(ji,jj,jk) = 1. / zzpsiuptk * xqndmin(ji,jj,jk) / (zration + rtrn) & |
---|
[10227] | 373 | & * MAX(0., (1. - zratchl * zdiatchl / 12. ) ) |
---|
| 374 | ! |
---|
[12349] | 375 | zlim1 = max(0., (zration - xqndmin(ji,jj,jk) ) & |
---|
| 376 | & / (xqndmax(ji,jj,jk) - xqndmin(ji,jj,jk) ) ) & |
---|
[10227] | 377 | & * xqndmax(ji,jj,jk) / (zration + rtrn) |
---|
[12537] | 378 | ! The value of the optimal quota in the formulation below |
---|
| 379 | ! has been found by solving a non linear equation |
---|
[12349] | 380 | zlim1f = max(0., (1.077 - xqndmin(ji,jj,jk) ) & |
---|
| 381 | & / (xqndmax(ji,jj,jk) - xqndmin(ji,jj,jk) ) ) & |
---|
| 382 | & * xqndmax(ji,jj,jk) |
---|
[10227] | 383 | zlim3 = trb(ji,jj,jk,jpsil) / ( trb(ji,jj,jk,jpsil) + xksi(ji,jj) ) |
---|
| 384 | zlim4 = MAX( 0., ( zratiof - zqfemd ) / qfdopt ) |
---|
[12537] | 385 | ! computation of the various limitation terms of diatoms |
---|
| 386 | ! growth and PP |
---|
[10227] | 387 | xlimdfe(ji,jj,jk) = MIN( 1., zlim4 ) |
---|
| 388 | xlimdia(ji,jj,jk) = MIN( 1., zlim1, zlim3, zlim4 ) |
---|
[12349] | 389 | xlimdias(ji,jj,jk) = MIN (1.0, zlim1 / (zlim1f + rtrn ), zlim3, zlim4 ) |
---|
[10227] | 390 | xlimsi(ji,jj,jk) = MIN( zlim1, zlim4 ) |
---|
[12349] | 391 | xlimnpd(ji,jj,jk) = MIN( 1., zlim1 ) |
---|
[10227] | 392 | END DO |
---|
| 393 | END DO |
---|
| 394 | END DO |
---|
| 395 | ! |
---|
| 396 | ! Compute the phosphorus quota values. It is based on Litchmann et al., 2004 and Daines et al, 2013. |
---|
| 397 | ! The relative contribution of three fonctional pools are computed: light harvesting apparatus, |
---|
| 398 | ! nutrient uptake pool and assembly machinery. DNA is assumed to represent 1% of the dry mass of |
---|
| 399 | ! phytoplankton (see Daines et al., 2013). |
---|
| 400 | ! -------------------------------------------------------------------------------------------------- |
---|
| 401 | DO jk = 1, jpkm1 |
---|
| 402 | DO jj = 1, jpj |
---|
| 403 | DO ji = 1, jpi |
---|
[12537] | 404 | ! Size estimation of nanophytoplankton based on total biomass |
---|
| 405 | ! Assumes that larger biomass implies addition of larger cells |
---|
| 406 | ! ------------------------------------------------------------ |
---|
[12349] | 407 | zcoef = trb(ji,jj,jk,jpphy) - MIN(xsizephy, trb(ji,jj,jk,jpphy) ) |
---|
| 408 | sizena(ji,jj,jk) = 1. + ( xsizern -1.0 ) * zcoef / ( xsizephy + zcoef ) |
---|
[10227] | 409 | ! N/P ratio of nanophytoplankton |
---|
| 410 | ! ------------------------------ |
---|
[12349] | 411 | zfuptk = 0.2 + 0.12 / ( 3.0 * sizen(ji,jj,jk) + rtrn ) |
---|
| 412 | zrpho = 1.54 * trb(ji,jj,jk,jpnch) / ( trb(ji,jj,jk,jpnph) * rno3 * 14. + rtrn ) |
---|
| 413 | zrass = MAX(0.62/4., ( 1. - zrpho - zfuptk ) * xlimnpn(ji,jj,jk) ) |
---|
| 414 | xqpnmin(ji,jj,jk) = ( 0.0 + 0.0078 + 0.62/4. * 0.0783 * xqnnmin(ji,jj,jk) ) * 16. |
---|
| 415 | xqpnmax(ji,jj,jk) = ( zrpho * 0.0128 + zrass * 0.0783 ) * 16. |
---|
| 416 | xqpnmax(ji,jj,jk) = xqpnmax(ji,jj,jk) * trb(ji,jj,jk,jpnph) / ( trb(ji,jj,jk,jpphy) + rtrn ) & |
---|
| 417 | & + (0.033 + 0.0078 ) * 16. |
---|
| 418 | xqpnmax(ji,jj,jk) = MIN( qpnmax, xqpnmax(ji,jj,jk) ) |
---|
[10227] | 419 | |
---|
[12349] | 420 | |
---|
[12537] | 421 | ! Size estimation of picophytoplankton based on total biomass |
---|
| 422 | ! Assumes that larger biomass implies addition of larger cells |
---|
| 423 | ! ------------------------------------------------------------ |
---|
[12349] | 424 | zcoef = trb(ji,jj,jk,jppic) - MIN(xsizepic, trb(ji,jj,jk,jppic) ) |
---|
| 425 | sizepa(ji,jj,jk) = 1. + ( xsizerp -1.0 ) * zcoef / ( xsizepic + zcoef ) |
---|
[10227] | 426 | |
---|
| 427 | ! N/P ratio of picophytoplankton |
---|
| 428 | ! ------------------------------ |
---|
[12349] | 429 | zfuptk = 0.2 + 0.12 / ( 0.5 * sizep(ji,jj,jk) + rtrn ) |
---|
| 430 | zrpho = 1.54 * trb(ji,jj,jk,jppch) / ( trb(ji,jj,jk,jpnpi) * rno3 * 14. + rtrn ) |
---|
| 431 | zrass = MAX(0.4/4., ( 1. - zrpho - zfuptk ) * xlimnpp(ji,jj,jk) ) |
---|
| 432 | xqppmin(ji,jj,jk) = ( (0.0 + 0.0078 ) + 0.4/4. * 0.0517 * xqnpmin(ji,jj,jk) ) * 16. |
---|
| 433 | xqppmax(ji,jj,jk) = ( zrpho * 0.0128 + zrass * 0.0517 ) * 16. |
---|
| 434 | xqppmax(ji,jj,jk) = xqppmax(ji,jj,jk) * trb(ji,jj,jk,jpnpi) / ( trb(ji,jj,jk,jppic) + rtrn ) & |
---|
| 435 | & + (0.033 + 0.0078 ) * 16 |
---|
| 436 | xqppmax(ji,jj,jk) = MIN( qppmax, xqppmax(ji,jj,jk) ) |
---|
[10227] | 437 | |
---|
[12537] | 438 | ! Size estimation of diatoms based on total biomass |
---|
| 439 | ! Assumes that larger biomass implies addition of larger cells |
---|
| 440 | ! ------------------------------------------------------------ |
---|
[10227] | 441 | zcoef = trb(ji,jj,jk,jpdia) - MIN(xsizedia, trb(ji,jj,jk,jpdia) ) |
---|
[12349] | 442 | sized(ji,jj,jk) = 1. + ( xsizerd - 1.0 ) * zcoef / ( xsizedia + zcoef ) |
---|
| 443 | sizeda(ji,jj,jk) = 1. + ( xsizerd - 1.0 ) * zcoef / ( xsizedia + zcoef ) |
---|
[10227] | 444 | |
---|
| 445 | ! N/P ratio of diatoms |
---|
| 446 | ! -------------------- |
---|
[12349] | 447 | zfuptk = 0.2 + 0.12 / ( 5.0 * sized(ji,jj,jk) + rtrn ) |
---|
| 448 | zrpho = 1.54 * trb(ji,jj,jk,jpdch) / ( trb(ji,jj,jk,jpndi) * rno3 * 14. + rtrn ) |
---|
| 449 | zrass = MAX(0.66/4., ( 1. - zrpho - zfuptk ) * xlimnpd(ji,jj,jk) ) |
---|
[10227] | 450 | |
---|
[12349] | 451 | xqpdmin(ji,jj,jk) = ( ( 0.0 + 0.0078 ) + 0.66/4. * 0.0783 * xqndmin(ji,jj,jk) ) * 16. |
---|
| 452 | xqpdmax(ji,jj,jk) = ( zrpho * 0.0128 + zrass * 0.0783 ) * 16. |
---|
| 453 | xqpdmax(ji,jj,jk) = xqpdmax(ji,jj,jk) * trb(ji,jj,jk,jpndi) / ( trb(ji,jj,jk,jpdia) + rtrn ) & |
---|
| 454 | & + ( 0.0078 + 0.033 ) * 16. |
---|
| 455 | xqpdmax(ji,jj,jk) = MIN(qpdmax, xqpdmax(ji,jj,jk) ) |
---|
| 456 | |
---|
[10227] | 457 | END DO |
---|
| 458 | END DO |
---|
| 459 | END DO |
---|
| 460 | |
---|
| 461 | ! Compute the fraction of nanophytoplankton that is made of calcifiers |
---|
[12537] | 462 | ! This is a purely adhoc formulation described in Aumont et al. (2015) |
---|
| 463 | ! This fraction depends on nutrient limitation, light, temperature |
---|
[10227] | 464 | ! -------------------------------------------------------------------- |
---|
| 465 | DO jk = 1, jpkm1 |
---|
| 466 | DO jj = 1, jpj |
---|
| 467 | DO ji = 1, jpi |
---|
| 468 | zlim1 = trb(ji,jj,jk,jpnh4) / ( trb(ji,jj,jk,jpnh4) + concnnh4 ) + trb(ji,jj,jk,jpno3) & |
---|
| 469 | & / ( trb(ji,jj,jk,jpno3) + concnno3 ) * ( 1.0 - trb(ji,jj,jk,jpnh4) & |
---|
| 470 | & / ( trb(ji,jj,jk,jpnh4) + concnnh4 ) ) |
---|
| 471 | zlim2 = trb(ji,jj,jk,jppo4) / ( trb(ji,jj,jk,jppo4) + concnpo4 ) |
---|
| 472 | zlim3 = trb(ji,jj,jk,jpfer) / ( trb(ji,jj,jk,jpfer) + 5.E-11 ) |
---|
| 473 | ztem1 = MAX( 0., tsn(ji,jj,jk,jp_tem) ) |
---|
| 474 | ztem2 = tsn(ji,jj,jk,jp_tem) - 10. |
---|
| 475 | zetot1 = MAX( 0., etot(ji,jj,jk) - 1.) / ( 4. + etot(ji,jj,jk) ) * 20. / ( 20. + etot(ji,jj,jk) ) |
---|
| 476 | |
---|
[12349] | 477 | xfracal(ji,jj,jk) = caco3r * MIN( zlim1, zlim2, zlim3 ) & |
---|
[10227] | 478 | & * ztem1 / ( 1. + ztem1 ) * MAX( 1., trb(ji,jj,jk,jpphy)*1E6 ) & |
---|
| 479 | & * ( 1. + EXP(-ztem2 * ztem2 / 25. ) ) & |
---|
| 480 | & * zetot1 * MIN( 1., 50. / ( hmld(ji,jj) + rtrn ) ) |
---|
| 481 | xfracal(ji,jj,jk) = MAX( 0.02, MIN( 0.8 , xfracal(ji,jj,jk) ) ) |
---|
| 482 | END DO |
---|
| 483 | END DO |
---|
| 484 | END DO |
---|
| 485 | ! |
---|
| 486 | DO jk = 1, jpkm1 |
---|
| 487 | DO jj = 1, jpj |
---|
| 488 | DO ji = 1, jpi |
---|
| 489 | ! denitrification factor computed from O2 levels |
---|
| 490 | nitrfac(ji,jj,jk) = MAX( 0.e0, 0.4 * ( 6.e-6 - trb(ji,jj,jk,jpoxy) ) & |
---|
| 491 | & / ( oxymin + trb(ji,jj,jk,jpoxy) ) ) |
---|
| 492 | nitrfac(ji,jj,jk) = MIN( 1., nitrfac(ji,jj,jk) ) |
---|
[12537] | 493 | ! |
---|
| 494 | ! redox factor computed from NO3 levels |
---|
| 495 | nitrfac2(ji,jj,jk) = MAX( 0.e0, ( 1.E-6 - trb(ji,jj,jk,jpno3) ) & |
---|
| 496 | & / ( 1.E-6 + trb(ji,jj,jk,jpno3) ) ) |
---|
| 497 | nitrfac2(ji,jj,jk) = MIN( 1., nitrfac2(ji,jj,jk) ) |
---|
[10227] | 498 | END DO |
---|
| 499 | END DO |
---|
| 500 | END DO |
---|
| 501 | ! |
---|
| 502 | IF( lk_iomput .AND. knt == nrdttrc ) THEN ! save output diagnostics |
---|
| 503 | IF( iom_use( "xfracal" ) ) CALL iom_put( "xfracal", xfracal(:,:,:) * tmask(:,:,:) ) ! euphotic layer deptht |
---|
| 504 | IF( iom_use( "LNnut" ) ) CALL iom_put( "LNnut" , xlimphy(:,:,:) * tmask(:,:,:) ) ! Nutrient limitation term |
---|
| 505 | IF( iom_use( "LPnut" ) ) CALL iom_put( "LPnut" , xlimpic(:,:,:) * tmask(:,:,:) ) ! Nutrient limitation term |
---|
| 506 | IF( iom_use( "LDnut" ) ) CALL iom_put( "LDnut" , xlimdia(:,:,:) * tmask(:,:,:) ) ! Nutrient limitation term |
---|
| 507 | IF( iom_use( "LNFe" ) ) CALL iom_put( "LNFe" , xlimnfe(:,:,:) * tmask(:,:,:) ) ! Iron limitation term |
---|
| 508 | IF( iom_use( "LPFe" ) ) CALL iom_put( "LPFe" , xlimpfe(:,:,:) * tmask(:,:,:) ) ! Iron limitation term |
---|
| 509 | IF( iom_use( "LDFe" ) ) CALL iom_put( "LDFe" , xlimdfe(:,:,:) * tmask(:,:,:) ) ! Iron limitation term |
---|
| 510 | IF( iom_use( "SIZEN" ) ) CALL iom_put( "SIZEN" , sizen(:,:,:) * tmask(:,:,:) ) ! Iron limitation term |
---|
| 511 | IF( iom_use( "SIZEP" ) ) CALL iom_put( "SIZEP" , sizep(:,:,:) * tmask(:,:,:) ) ! Iron limitation term |
---|
| 512 | IF( iom_use( "SIZED" ) ) CALL iom_put( "SIZED" , sized(:,:,:) * tmask(:,:,:) ) ! Iron limitation term |
---|
| 513 | ENDIF |
---|
| 514 | ! |
---|
| 515 | IF( ln_timing ) CALL timing_stop('p5z_lim') |
---|
| 516 | ! |
---|
| 517 | END SUBROUTINE p5z_lim |
---|
| 518 | |
---|
| 519 | |
---|
| 520 | SUBROUTINE p5z_lim_init |
---|
| 521 | !!---------------------------------------------------------------------- |
---|
| 522 | !! *** ROUTINE p5z_lim_init *** |
---|
| 523 | !! |
---|
| 524 | !! ** Purpose : Initialization of nutrient limitation parameters |
---|
| 525 | !! |
---|
| 526 | !! ** Method : Read the nampislim and nampisquota namelists and check |
---|
| 527 | !! the parameters called at the first timestep (nittrc000) |
---|
| 528 | !! |
---|
| 529 | !! ** input : Namelist nampislim |
---|
| 530 | !! |
---|
| 531 | !!---------------------------------------------------------------------- |
---|
| 532 | INTEGER :: ios ! Local integer output status for namelist read |
---|
| 533 | !! |
---|
| 534 | NAMELIST/namp5zlim/ concnno3, concpno3, concdno3, concnnh4, concpnh4, concdnh4, & |
---|
| 535 | & concnfer, concpfer, concdfer, concbfe, concnpo4, concppo4, & |
---|
| 536 | & concdpo4, concbno3, concbnh4, concbpo4, xsizedia, xsizepic, & |
---|
| 537 | & xsizephy, xsizern, xsizerp, xsizerd, xksi1, xksi2, xkdoc, & |
---|
| 538 | & caco3r, oxymin |
---|
| 539 | ! |
---|
| 540 | NAMELIST/namp5zquota/ qnnmin, qnnmax, qpnmin, qpnmax, qnpmin, qnpmax, qppmin, & |
---|
| 541 | & qppmax, qndmin, qndmax, qpdmin, qpdmax, qfnmax, qfpmax, qfdmax, & |
---|
| 542 | & qfnopt, qfpopt, qfdopt |
---|
| 543 | !!---------------------------------------------------------------------- |
---|
| 544 | ! |
---|
| 545 | REWIND( numnatp_ref ) ! Namelist nampislim in reference namelist : Pisces nutrient limitation parameters |
---|
| 546 | READ ( numnatp_ref, namp5zlim, IOSTAT = ios, ERR = 901) |
---|
[11536] | 547 | 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nampislim in reference namelist' ) |
---|
[10227] | 548 | ! |
---|
| 549 | REWIND( numnatp_cfg ) ! Namelist nampislim in configuration namelist : Pisces nutrient limitation parameters |
---|
| 550 | READ ( numnatp_cfg, namp5zlim, IOSTAT = ios, ERR = 902 ) |
---|
[11536] | 551 | 902 IF( ios > 0 ) CALL ctl_nam ( ios , 'nampislim in configuration namelist' ) |
---|
[10227] | 552 | IF(lwm) WRITE ( numonp, namp5zlim ) |
---|
| 553 | ! |
---|
| 554 | IF(lwp) THEN ! control print |
---|
| 555 | WRITE(numout,*) ' ' |
---|
| 556 | WRITE(numout,*) ' Namelist parameters for nutrient limitations, namp5zlim' |
---|
| 557 | WRITE(numout,*) ' ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~' |
---|
| 558 | WRITE(numout,*) ' mean rainratio caco3r = ', caco3r |
---|
| 559 | WRITE(numout,*) ' NO3 half saturation of nanophyto concnno3 = ', concnno3 |
---|
| 560 | WRITE(numout,*) ' NO3 half saturation of picophyto concpno3 = ', concpno3 |
---|
| 561 | WRITE(numout,*) ' NO3 half saturation of diatoms concdno3 = ', concdno3 |
---|
| 562 | WRITE(numout,*) ' NH4 half saturation for phyto concnnh4 = ', concnnh4 |
---|
| 563 | WRITE(numout,*) ' NH4 half saturation for pico concpnh4 = ', concpnh4 |
---|
| 564 | WRITE(numout,*) ' NH4 half saturation for diatoms concdnh4 = ', concdnh4 |
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| 565 | WRITE(numout,*) ' PO4 half saturation for phyto concnpo4 = ', concnpo4 |
---|
| 566 | WRITE(numout,*) ' PO4 half saturation for pico concppo4 = ', concppo4 |
---|
| 567 | WRITE(numout,*) ' PO4 half saturation for diatoms concdpo4 = ', concdpo4 |
---|
| 568 | WRITE(numout,*) ' half saturation constant for Si uptake xksi1 = ', xksi1 |
---|
| 569 | WRITE(numout,*) ' half saturation constant for Si/C xksi2 = ', xksi2 |
---|
| 570 | WRITE(numout,*) ' half-sat. of DOC remineralization xkdoc = ', xkdoc |
---|
| 571 | WRITE(numout,*) ' Iron half saturation for nanophyto concnfer = ', concnfer |
---|
| 572 | WRITE(numout,*) ' Iron half saturation for picophyto concpfer = ', concpfer |
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| 573 | WRITE(numout,*) ' Iron half saturation for diatoms concdfer = ', concdfer |
---|
| 574 | WRITE(numout,*) ' size ratio for nanophytoplankton xsizern = ', xsizern |
---|
| 575 | WRITE(numout,*) ' size ratio for picophytoplankton xsizerp = ', xsizerp |
---|
| 576 | WRITE(numout,*) ' size ratio for diatoms xsizerd = ', xsizerd |
---|
| 577 | WRITE(numout,*) ' NO3 half saturation of bacteria concbno3 = ', concbno3 |
---|
| 578 | WRITE(numout,*) ' NH4 half saturation for bacteria concbnh4 = ', concbnh4 |
---|
| 579 | WRITE(numout,*) ' Minimum size criteria for diatoms xsizedia = ', xsizedia |
---|
| 580 | WRITE(numout,*) ' Minimum size criteria for picophyto xsizepic = ', xsizepic |
---|
| 581 | WRITE(numout,*) ' Minimum size criteria for nanophyto xsizephy = ', xsizephy |
---|
| 582 | WRITE(numout,*) ' Fe half saturation for bacteria concbfe = ', concbfe |
---|
| 583 | WRITE(numout,*) ' halk saturation constant for anoxia oxymin =' , oxymin |
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| 584 | ENDIF |
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| 585 | |
---|
| 586 | REWIND( numnatp_ref ) ! Namelist nampislim in reference namelist : Pisces nutrient limitation parameters |
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| 587 | READ ( numnatp_ref, namp5zquota, IOSTAT = ios, ERR = 903) |
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[11536] | 588 | 903 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nampisquota in reference namelist' ) |
---|
[10227] | 589 | ! |
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| 590 | REWIND( numnatp_cfg ) ! Namelist nampislim in configuration namelist : Pisces nutrient limitation parameters |
---|
| 591 | READ ( numnatp_cfg, namp5zquota, IOSTAT = ios, ERR = 904 ) |
---|
[11536] | 592 | 904 IF( ios > 0 ) CALL ctl_nam ( ios , 'nampisquota in configuration namelist' ) |
---|
[10227] | 593 | IF(lwm) WRITE ( numonp, namp5zquota ) |
---|
| 594 | ! |
---|
| 595 | IF(lwp) THEN ! control print |
---|
| 596 | WRITE(numout,*) ' ' |
---|
| 597 | WRITE(numout,*) ' Namelist parameters for nutrient limitations, namp5zquota' |
---|
| 598 | WRITE(numout,*) ' ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~' |
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| 599 | WRITE(numout,*) ' optimal Fe quota for nano. qfnopt = ', qfnopt |
---|
| 600 | WRITE(numout,*) ' optimal Fe quota for pico. qfpopt = ', qfpopt |
---|
| 601 | WRITE(numout,*) ' Optimal Fe quota for diatoms qfdopt = ', qfdopt |
---|
| 602 | WRITE(numout,*) ' Minimal N quota for nano qnnmin = ', qnnmin |
---|
| 603 | WRITE(numout,*) ' Maximal N quota for nano qnnmax = ', qnnmax |
---|
| 604 | WRITE(numout,*) ' Minimal P quota for nano qpnmin = ', qpnmin |
---|
| 605 | WRITE(numout,*) ' Maximal P quota for nano qpnmax = ', qpnmax |
---|
| 606 | WRITE(numout,*) ' Minimal N quota for pico qnpmin = ', qnpmin |
---|
| 607 | WRITE(numout,*) ' Maximal N quota for pico qnpmax = ', qnpmax |
---|
| 608 | WRITE(numout,*) ' Minimal P quota for pico qppmin = ', qppmin |
---|
| 609 | WRITE(numout,*) ' Maximal P quota for pico qppmax = ', qppmax |
---|
| 610 | WRITE(numout,*) ' Minimal N quota for diatoms qndmin = ', qndmin |
---|
| 611 | WRITE(numout,*) ' Maximal N quota for diatoms qndmax = ', qndmax |
---|
| 612 | WRITE(numout,*) ' Minimal P quota for diatoms qpdmin = ', qpdmin |
---|
| 613 | WRITE(numout,*) ' Maximal P quota for diatoms qpdmax = ', qpdmax |
---|
| 614 | WRITE(numout,*) ' Maximal Fe quota for nanophyto. qfnmax = ', qfnmax |
---|
| 615 | WRITE(numout,*) ' Maximal Fe quota for picophyto. qfpmax = ', qfpmax |
---|
| 616 | WRITE(numout,*) ' Maximal Fe quota for diatoms qfdmax = ', qfdmax |
---|
| 617 | ENDIF |
---|
| 618 | ! |
---|
[12349] | 619 | zpsino3 = 2.3 * rno3 |
---|
| 620 | zpsinh4 = 1.8 * rno3 |
---|
| 621 | zpsiuptk = 1.0 / 6.625 |
---|
[10227] | 622 | ! |
---|
| 623 | nitrfac (:,:,:) = 0._wp |
---|
| 624 | ! |
---|
| 625 | END SUBROUTINE p5z_lim_init |
---|
| 626 | |
---|
| 627 | |
---|
| 628 | INTEGER FUNCTION p5z_lim_alloc() |
---|
| 629 | !!---------------------------------------------------------------------- |
---|
| 630 | !! *** ROUTINE p5z_lim_alloc *** |
---|
| 631 | !!---------------------------------------------------------------------- |
---|
[10425] | 632 | USE lib_mpp , ONLY: ctl_stop |
---|
[10227] | 633 | INTEGER :: ierr(2) ! Local variables |
---|
| 634 | !!---------------------------------------------------------------------- |
---|
| 635 | ierr(:) = 0 |
---|
| 636 | ! |
---|
| 637 | !* Biological arrays for phytoplankton growth |
---|
| 638 | ALLOCATE( xpicono3(jpi,jpj,jpk), xpiconh4(jpi,jpj,jpk), & |
---|
| 639 | & xpicopo4(jpi,jpj,jpk), xpicodop(jpi,jpj,jpk), & |
---|
| 640 | & xnanodop(jpi,jpj,jpk), xdiatdop(jpi,jpj,jpk), & |
---|
| 641 | & xnanofer(jpi,jpj,jpk), xdiatfer(jpi,jpj,jpk), & |
---|
| 642 | & xpicofer(jpi,jpj,jpk), xlimpfe (jpi,jpj,jpk), & |
---|
| 643 | & fvnuptk (jpi,jpj,jpk), fvduptk (jpi,jpj,jpk), & |
---|
[12349] | 644 | & xlimphys(jpi,jpj,jpk), xlimdias(jpi,jpj,jpk), & |
---|
| 645 | & xlimpics(jpi,jpj,jpk), & |
---|
[10362] | 646 | & fvpuptk (jpi,jpj,jpk), xlimpic (jpi,jpj,jpk), STAT=ierr(1) ) |
---|
[10227] | 647 | ! |
---|
| 648 | !* Minimum/maximum quotas of phytoplankton |
---|
| 649 | ALLOCATE( xqnnmin (jpi,jpj,jpk), xqnnmax(jpi,jpj,jpk), & |
---|
| 650 | & xqpnmin (jpi,jpj,jpk), xqpnmax(jpi,jpj,jpk), & |
---|
| 651 | & xqnpmin (jpi,jpj,jpk), xqnpmax(jpi,jpj,jpk), & |
---|
| 652 | & xqppmin (jpi,jpj,jpk), xqppmax(jpi,jpj,jpk), & |
---|
| 653 | & xqndmin (jpi,jpj,jpk), xqndmax(jpi,jpj,jpk), & |
---|
| 654 | & xqpdmin (jpi,jpj,jpk), xqpdmax(jpi,jpj,jpk), STAT=ierr(2) ) |
---|
| 655 | ! |
---|
| 656 | p5z_lim_alloc = MAXVAL( ierr ) |
---|
| 657 | ! |
---|
[10425] | 658 | IF( p5z_lim_alloc /= 0 ) CALL ctl_stop( 'STOP', 'p5z_lim_alloc : failed to allocate arrays.' ) |
---|
[10227] | 659 | ! |
---|
| 660 | END FUNCTION p5z_lim_alloc |
---|
| 661 | !!====================================================================== |
---|
| 662 | END MODULE p5zlim |
---|