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sette_rpt.sh in NEMO/branches/2019/fix_sette_ticket2239 – NEMO

source: NEMO/branches/2019/fix_sette_ticket2239/sette_rpt.sh @ 10687

Last change on this file since 10687 was 10687, checked in by mathiot, 5 years ago

first commit on sette changes suggested in ticket2239

  • Property svn:executable set to *
File size: 16.8 KB
Line 
1#!/bin/bash -f
2# set -vx
3# simple SETTE report generator.
4#
5# This version should be run in the SETTE directory.
6# The machine name will be picked up from the sette.sh script but the location of the
7# validation directory needs to be set here (currently assumed to reside in the ../cfgs directory)
8#
9#########################################################################################
10######################### Start of function definitions #################################
11##
12
13function restfile() {
14# Rebuild ice restart for SAS CONFIG, and restartability checks. Expects LONG and SHORT run directories.
15# For Stand Alone Surface configuration ocean is not running, just run ice model; so no outputs ocean files.
16# Compares LONG rebuild restart ice file with equivalent entry from the SHORT rebuild restart ice file.
17#
18# check nco module loaded, and load it if not
19if [ ! $( echo $LOADEDMODULES | grep cdo ) ]; then module load cdo >& /dev/null ; fi
20#
21  vdir=$1
22  nam=$2
23  pass=$3
24
25#
26  if [ -d $vdir/$nam ]; then
27    dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l `
28    dorv=`echo $dorv | sed -e 's:.*/::'`
29    rep1=`ls -1rt $vdir/$nam/$mach/$dorv/ | tail -2l | head -1 `
30    rep2=`ls -1rt $vdir/$nam/$mach/$dorv/ | tail -1l`
31    cd ${SAS_RESTART_DIR}/LONG
32    #SF add here compilation of rebuild_tools to rebuild restart files, and add comparison of restart files
33    cd ${TOOLS_DIR}
34    ./maketools -n REBUILD_NEMO -m ${mach} > /dev/null 2>&1
35    cd ${TOOLS_DIR}/REBUILD_NEMO
36    #SF echo "REBUILD LONG restart SAS files, without standard output"
37    ./rebuild_nemo -t 4 ../../cfgs/ORCA2_SAS_ICE_ST/LONG/SAS_00000240_restart_ice  $NPROC > /dev/null 2>&1
38    #SF echo "REBUILD SHORT restart SAS files, without standard output"
39    ./rebuild_nemo -t 4 ../../cfgs/ORCA2_SAS_ICE_ST/SHORT/SAS_00000240_restart_ice $NPROC >&-
40    cd ${SAS_RESTART_DIR}/LONG
41    #SF echo "COPY rebuild restart files"
42    cp SAS_00000240_restart_ice.nc $vdir/$nam/$mach/$dorv/LONG/.
43    cp ../SHORT/SAS_00000240_restart_ice.nc $vdir/$nam/$mach/$dorv/SHORT/.
44
45    f1o=$vdir/$nam/$mach/$dorv/LONG/SAS_00000240_restart_ice.nc
46    f2o=$vdir/$nam/$mach/$dorv/SHORT/SAS_00000240_restart_ice.nc
47    if  [ ! -f $f1o ] &&  [ ! -f $f2o ] ; then
48      printf "%-27s %s\n" $nam " REBUILD SAS restart ice DOES NOT exists; incomplete test";
49      return;
50    fi
51    #
52    done_oce=0
53    #
54  if  [  -f $f1o ] && [  -f $f2o ]; then
55## Compare the two netcdf files
56    cdo diffn $f1o $f2o > cdo_diff.out 2> /dev/null
57## Identical if cdo_diff.out exists but has zero size
58    if [ ! -s cdo_diff.out ]; then
59       difi=0
60    else
61## Identical if first character of $dif ==0
62       dif=$( grep -om1 '[0-9]* of [0-9]* records differ' cdo_diff.out )
63# difi contains the first character of summary of cdo dif. if = 0, then 0 record differ between the 2 files   
64       if [ -n "$dif" ]; then
65           difi=`echo $dif | cut -c -1`
66       fi
67    fi
68    \rm cdo_diff.out
69
70    if [ $difi == 0 ]; then   
71       if [ $pass == 0 ]; then
72         printf "%-27s %s %s\n" $nam  " ice restarts are IDENTICAL  passed : " $dorv
73       fi
74    else
75       printf "%-27s %s %s\n" $nam  " ice restarts are DIFFERENT  FAILED : " $dorv 
76        #
77   # Offer view of differences on the second pass
78   #
79        if [ $pass == 1 ]; then
80          echo "<return> to view restart_ice.nc differences"
81          read y
82          cdo -diffv $f1o $f2o
83          done_oce=1
84          #echo "<return> to continue"
85          #read y
86        fi
87    fi
88  else
89      printf "%-27s %s\n" $nam " incomplete test";
90      return;
91  fi
92#
93fi
94}
95
96function resttest() { 
97#
98# Restartability checks. Expects LONG and SHORT run directories
99# Compares end of LONG stat files with equivalent entries from the SHORT stat files.
100#
101  vdir=$1
102  nam=$2
103  pass=$3
104#
105  if [ -d $vdir/$nam ]; then
106    dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l `
107    dorv=`echo $dorv | sed -e 's:.*/::'`
108    f1o=$vdir/$nam/$mach/$dorv/LONG/ocean.output
109    f1s=$vdir/$nam/$mach/$dorv/LONG/run.stat
110    f1t=$vdir/$nam/$mach/$dorv/LONG/tracer.stat
111    f2o=$vdir/$nam/$mach/$dorv/SHORT/ocean.output
112    f2s=$vdir/$nam/$mach/$dorv/SHORT/run.stat
113    f2t=$vdir/$nam/$mach/$dorv/SHORT/tracer.stat
114
115    if  [ ! -f $f1s ] &&  [ ! -f $f1t ] ; then
116      printf "%-27s %s\n" $nam " incomplete test";
117      return;
118    fi
119    if  [ ! -f $f2s ] &&  [ ! -f $f2t ] ; then
120      printf "%-27s %s\n" $nam " incomplete test";
121      return;
122    fi
123#
124    done_oce=0
125
126    if  [  -f $f1s ] && [  -f $f2s ]; then
127      nl=(`wc -l $f2s`)
128      tail -${nl[0]} $f1s > f1.tmp$$
129      cmp -s f1.tmp$$ $f2s
130      if [ $? == 0 ]; then
131        if [ $pass == 0 ]; then
132          printf "%-27s %s %s\n" $nam  " run.stat    restartability  passed : " $dorv
133        fi
134      else
135        printf "%-27s %s %s\n" $nam  " run.stat    restartability  FAILED : " $dorv 
136#
137# Offer view of differences on the second pass
138#
139        if [ $pass == 1 ]; then
140          echo "<return> to view run.stat differences"
141          read y
142          sdiff f1.tmp$$ $f2s
143          echo "<return> to view ocean.output differences"
144          read y
145          sdiff $f1o $f2o | grep "|"
146          done_oce=1
147          echo "<return> to continue"
148          read y
149        fi
150      fi
151    fi
152#
153# Check tracer.stat files (if they exist)
154#
155    if  [  -f $f1t ] && [  -f $f2t ]; then
156      nl=(`wc -l $f2t`)
157      tail -${nl[0]} $f1t > f1.tmp$$
158      cmp -s f1.tmp$$ $f2t
159      if [ $? == 0 ]; then
160        if [ $pass == 0 ]; then
161          printf "%-27s %s %s\n" $nam  " tracer.stat restartability  passed : " $dorv
162        fi
163      else
164        printf "%-27s %s %s\n" $nam  " tracer.stat restartability  FAILED : " $dorv 
165#
166# Offer view of differences on the second pass
167#
168        if [ $pass == 1 ]; then
169          echo "<return> to view tracer.stat differences"
170          read y
171          sdiff f1.tmp$$ $f2t
172#
173# Only offer ocean.output view if it has not been viewed previously
174#
175          if [ $done_oce == 0 ]; then
176            echo "<return> to view ocean.output differences"
177            read y
178            sdiff $f1o $f2o | grep "|"
179          fi
180          echo "<return> to continue"
181          read y
182        fi
183      fi
184    fi
185    rm f1.tmp$$
186  fi
187}
188
189function reprotest(){
190#
191# Reproducibility checks. Expects REPRO_N_M and REPRO_I_J run directories
192# Compares end of stat files from each
193#
194  vdir=$1
195  nam=$2
196  pass=$3
197#
198  if [ -d $vdir/$nam ]; then
199    dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l `
200    dorv=`echo $dorv | sed -e 's:.*/::'`
201    rep1=`ls -1rt $vdir/$nam/$mach/$dorv/ | grep REPRO | tail -2l | head -1 `
202    rep2=`ls -1rt $vdir/$nam/$mach/$dorv/ | grep REPRO | tail -1l`
203    f1o=$vdir/$nam/$mach/$dorv/$rep1/ocean.output
204    f1s=$vdir/$nam/$mach/$dorv/$rep1/run.stat
205    f1t=$vdir/$nam/$mach/$dorv/$rep1/tracer.stat
206    f2o=$vdir/$nam/$mach/$dorv/$rep2/ocean.output
207    f2s=$vdir/$nam/$mach/$dorv/$rep2/run.stat
208    f2t=$vdir/$nam/$mach/$dorv/$rep2/tracer.stat
209
210    if  [ ! -f $f1s ] && [ ! -f $f1t ] ; then
211      printf "%-27s %s\n" $nam " incomplete test";
212      return;
213    fi
214    if  [ ! -f $f2s ] && [ ! -f $f2t ] ; then
215      printf "%-27s %s\n" $nam " incomplete test";
216      return;
217    fi
218#
219    done_oce=0
220
221    if  [ -f $f1s ] && [ -f $f2s ] ; then
222      cmp -s $f1s $f2s
223      if [ $? == 0 ]; then
224        if [ $pass == 0 ]; then
225          printf "%-27s %s %s\n" $nam  " run.stat    reproducibility passed : " $dorv
226        fi
227      else
228        printf "%-27s %s %s\n" $nam  " run.stat    reproducibility FAILED : " $dorv 
229#
230# Offer view of differences on the second pass
231#
232        if [ $pass == 1 ]; then
233          echo "<return> to view run.stat differences"
234          read y
235          sdiff $f1s $f2s
236          echo "<return> to view ocean.output differences"
237          read y
238          sdiff $f1o $f2o | grep "|"
239          done_oce=1
240          echo "<return> to continue"
241          read y
242        fi
243      fi
244    fi
245#
246# Check tracer.stat files (if they exist)
247#
248    if  [ -f $f1t ] && [ -f $f2t ] ; then
249      cmp -s $f1t $f2t
250      if [ $? == 0 ]; then
251        if [ $pass == 0 ]; then           printf "%-27s %s %s\n" $nam  " tracer.stat reproducibility passed : " $dorv
252        fi
253      else
254        printf "%-27s %s %s\n" $nam  " tracer.stat reproducibility  FAILED : " $dorv
255#
256# Offer view of differences on the second pass
257#
258        if [ $pass == 1 ]; then
259          echo "<return> to view tracer.stat differences"
260          read y
261          sdiff $f1t $f2t
262#
263# Only offer ocean.output view if it has not been viewed previously
264#
265          if [ $done_oce == 0 ]; then
266            echo "<return> to view ocean.output differences"
267            read y
268            sdiff $f1o $f2o | grep "|"
269          fi
270          echo "<return> to continue"
271          read y
272        fi
273      fi
274    fi
275  fi
276}
277function runcmpres(){
278#
279# compare *.stat file with reference file from a previous sette test or previous version
280# store in NEMO_VALID_REF at revision NEMO_REV_REF
281# Compares end of stat files from each
282#
283  vdir=$1
284  nam=$2
285  vdirref=$3
286  dorvref=$4
287  pass=$5
288#
289  if [ -d $vdir/$nam ]; then
290    dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l `
291    dorv=`echo $dorv | sed -e 's:.*/::'`
292    f1s=$vdir/$nam/$mach/$dorv/LONG/run.stat
293    f1t=$vdir/$nam/$mach/$dorv/LONG/tracer.stat
294    f2s=$vdirref/$nam/$mach/$dorvref/LONG/run.stat
295    f2t=$vdirref/$nam/$mach/$dorvref/LONG/tracer.stat
296    if  [ ! -f $f1s ] && [ ! -f $f1t ] ; then
297      printf "%-20s %s\n" $nam " incomplete test";
298      return;
299    fi
300    if  [ ! -f $f2s ] && [ ! -f $f2t ] ; then
301      printf "%-20s %s\n" $nam " incomplete test";
302      return;
303    fi
304#
305    done_oce=0
306
307    if  [ -f $f1s ] && [ -f $f2s ] ; then
308      cmp -s $f1s $f2s
309      if [ $? == 0 ]; then
310        if [ $pass == 0 ]; then
311          printf "%-20s %s %s\n" $nam  " run.stat    before/after are similar "
312        fi
313      else
314        printf "%-20s %s %s\n" $nam  " run.stat    before/after are DIFFERENT "
315#
316# Offer view of differences on the second pass
317#
318        if [ $pass == 1 ]; then
319          echo "<return> to view run.stat differences"
320          read y
321          sdiff f1.tmp$$ $f2s
322          done_oce=1
323          echo "<return> to continue"
324          read y
325        fi
326      fi
327    fi
328    # Check tracer.stat files (if they exist)
329#
330    if  [ -f $f1t ] && [ -f $f2t ] ; then
331      cmp -s $f1t $f2t
332      if [ $? == 0 ]; then
333        if [ $pass == 0 ]; then         
334          printf "%-20s %s %s\n" $nam  " tracer.stat before/after are similar "
335        fi
336      else
337        printf "%-20s %s %s\n" $nam  " tracer.stat before/after are DIFFERENT "
338#
339# Offer view of differences on the second pass
340#
341        if [ $pass == 1 ]; then
342          echo "<return> to view tracer.stat differences"
343          read y
344          sdiff $f1t $f2t
345        fi
346      fi
347    fi
348  fi
349}
350
351function runtest(){
352#
353# Run checks.
354# Check presence of E R R O R in ocean.output from each
355#
356  vdir=$1
357  nam=$2
358  pass=$3
359#
360  if [ -d $vdir/$nam ]; then
361    dorv=`ls -1rt $vdir/$nam/$mach/ | tail -1l `
362    dorv=`echo $dorv | sed -e 's:.*/::'`
363    rep1=`ls -1rt $vdir/$nam/$mach/$dorv/ | grep LONG | head -1 `
364    if  [  -z $rep1 ] ; then
365      # Not all configurations test restartability (LONG/SHORT);
366      # check for a reproducibility directory instead (REPRO)
367      rep1=`ls -1rt $vdir/$nam/$mach/$dorv/ | grep REPRO | head -1 `
368    fi
369    f1o=$vdir/$nam/$mach/$dorv/$rep1/ocean.output
370    if  [ ! -f $f1o ] ; then
371      if [ $pass == 0 ]; then printf "%-27s %s %s\n" $nam " ocean.output is MISSING            : " $dorv ; fi
372      return;
373    else
374      nerr=`grep 'E R R O R' $f1o | wc -l`
375      if [[ $nerr > 0 ]]; then
376        printf "%-27s %s %s\n" $nam " run FAILED : " $dorv
377        if [ $pass == 1 ]; then
378          echo "<return> to view end of ocean.output"
379          read y
380          tail -100 $f1o
381          echo ''
382          echo "full ocean.output available here: $f1o"
383        fi
384      fi
385    fi
386  else
387    if [ $pass == 0 ]; then printf "%-27s %s %s\n" $nam  " directory is MISSING               : " $dorv ; fi
388  fi
389}
390
391function identictest(){
392#
393#  checks AGRIF does not corrupe results with no AGRIF zoom. Expects ORCA2AGUL/AGRIFNOZ and ORCA2AGUL_NAGR/AGRIFNO  run directories
394# Compares solver.stat files for each
395#
396  vdir=$1
397  dir1=$2
398  dir2=$3
399  pass=$4
400#
401  if [ -d $vdir/$dir1 ] && [ -d $vdir/$dir2 ]; then
402    dorv1=`ls -1rt $vdir/$dir1/$mach/ | tail -1l `
403    dorv1=`echo $dorv1 | sed -e 's:.*/::'`
404    dorv2=`ls -1rt $vdir/$dir2/$mach/ | tail -1l `
405    dorv2=`echo $dorv2 | sed -e 's:.*/::'`
406
407    rep1=`ls -1rt $vdir/$dir1/$mach/$dorv1/ |  tail -1l`
408#clem    rep2=`ls -1rt $vdir/$dir2/$mach/$dorv2/ |  tail -1l`
409    rep2=`ls -1rt $vdir/$dir1/$mach/$dorv1/ |  tail -1l`
410    f1s=$vdir/$dir1/$mach/$dorv1/$rep1/run.stat
411    f2s=$vdir/$dir2/$mach/$dorv2/$rep2/run.stat
412
413    if  [ ! -f $f1s ] && [ ! -f $f2s ] ; then
414      printf "%-27s %s\n" $dir1 $dir2 " incomplete test";
415      return;
416    fi
417#
418    done_oce=0
419
420    if  [ -f $f1s ] && [ -f $f2s ] ; then
421      cmp -s $f1s $f2s
422      if [ $? == 0 ]; then
423        if [ $pass == 0 ]; then
424          printf "%-5s %s %-5s %s %s %s\n" $rep1 "AGRIF vs" $rep2 "NOAGRIF run.stat    unchanged  -    passed : " $dorv1 $dorv2
425        fi
426      else
427        printf "%-5s %s %-5s %s %s %s\n" $rep1 "AGRIF vs" $rep2 "NOAGRIF run.stat    changed  -     FAILED : " $dorv1 $dorv2
428#
429# Offer view of differences on the second pass
430#
431        if [ $pass == 1 ]; then
432          echo "<return> to view run.stat differences"
433          read y
434          sdiff $f1s $f2s
435          done_oce=1
436          echo "<return> to continue"
437          read y
438        fi
439      fi
440    fi
441  else
442    printf "%-27s %s\n" $dir1 $dir2 " incomplete test";
443  fi
444}
445########################### END of function definitions #################################
446##                                                                                     ##
447##    Main script                                                                      ##
448##                                                                                     ##
449#########################################################################################
450#
451# LOAD param variable (COMPILER, NEMO_VALIDATION_DIR, SVN_CMD)
452  . ./param.cfg
453
454  mach=${COMPILER}
455  NEMO_VALID=${NEMO_VALIDATION_DIR}
456  NEMO_VALID_REF=${NEMO_VALIDATION_REF}
457  LANG=en_US
458#
459  if [ ! -d $NEMO_VALID ]; then
460    echo "$NEMO_VALID validation directory not found"
461    exit
462  fi
463#
464# Directory to run the tests
465  SETTE_DIR=$(cd $(dirname "$0"); pwd)
466  MAIN_DIR=${SETTE_DIR}/..
467  CONFIG_DIR0=${MAIN_DIR}/cfgs
468  TOOLS_DIR=${MAIN_DIR}/tools
469  NPROC=32
470  SAS_RESTART_DIR=${CONFIG_DIR0}/ORCA2_SAS_ICE_ST
471#
472# Show current revision tag and branch name
473#
474echo ""
475lastchange=`LC_MESSAGES=${LANG} ${SVN_CMD} info ${MAIN_DIR} | grep 'Last Changed Rev' | awk '{print $NF}'`
476revision=`LC_MESSAGES=${LANG} ${SVN_CMD} info ${MAIN_DIR} | grep 'Revision' | awk '{print $NF}'`
477branchname=`LC_MESSAGES=${LANG} ${SVN_CMD} info ${MAIN_DIR} | grep ^URL | awk -F ipsl/forge/projets/nemo/svn/ '{print $NF}'`
478echo "SETTE validation report : $branchname @ r$revision  ( last change @ r$lastchange )"
479#
480# The script also needs the date or revision tag. Currently this is taken from the latest sub-directory found in each directory
481
482for pass in  0 1
483do
484#
485 if [ $pass == 0 ]; then
486   echo "" 
487   echo "!!---------------1st pass------------------!!"
488 fi
489 if [ $pass == 1 ]; then
490    echo ""
491    echo "!!---------------2nd pass------------------!!"
492 fi
493#
494
495# Rebuild and restartability test for SAS
496# clem: not needed anymore
497# for restart_file in WORCA2_SAS_ICE_ST
498# do
499#   restfile $NEMO_VALID $restart_file $pass
500# done
501#
502# Restartability test
503 echo ""
504 echo "   !----restart----!   "
505 for restart_test in WGYRE_PISCES_ST WORCA2_ICE_PISCES_ST WORCA2_OFF_PISCES_ST WAMM12_ST WORCA2_SAS_ICE_ST WAGRIF_DEMO_ST WSPITZ12_ST WISOMIP_ST WOVERFLOW_ST WLOCK_EXCHANGE_ST WVORTEX_ST WICE_AGRIF_ST
506 do
507   resttest $NEMO_VALID $restart_test $pass
508   runtest $NEMO_VALID $restart_test $pass
509 done
510#
511# Reproducibility tests
512 echo ""
513 echo "   !----repro----!   "
514 for repro_test in WGYRE_PISCES_ST WORCA2_ICE_PISCES_ST WORCA2_OFF_PISCES_ST WAMM12_ST WORCA2_SAS_ICE_ST WORCA2_ICE_OBS_ST WAGRIF_DEMO_ST WSPITZ12_ST WISOMIP_ST WVORTEX_ST WICE_AGRIF_ST
515 do
516   reprotest $NEMO_VALID $repro_test $pass
517   runtest $NEMO_VALID $repro_test $pass
518 done
519
520# AGRIF special check to ensure results are unchanged with and without key_agrif
521 echo ""
522 echo "   !----agrif check----!   "
523 dir1=WAGRIF_DEMO_NOAGRIF_ST
524 dir2=WAGRIF_DEMO_ST
525 identictest $NEMO_VALID $dir1 $dir2 $pass 
526#
527# before/after tests
528#
529 if [ $NEMO_VALID_REF != "/path/to/reference/sette/results" ]; then
530   echo ''
531   echo 'check result differences between :'
532   echo "$NEMO_VALID at rev $revision"
533   echo 'and'
534   echo "$NEMO_VALID_REF at rev $NEMO_REV_REF"
535   for repro_test in WGYRE_PISCES_ST WORCA2_ICE_PISCES_ST WORCA2_OFF_PISCES_ST WAMM12_ST WISOMIP_ST WORCA2_SAS_ICE_ST WAGRIF_DEMO_ST WSPITZ12_ST WISOMIP_ST WVORTEX_ST WICE_AGRIF_ST
536   do
537     runcmpres $NEMO_VALID $repro_test $NEMO_VALID_REF $NEMO_REV_REF $pass
538   done
539 else
540   echo ''
541   echo 'Result are not compare with any other revision. To do it please fill NEMO_VALID_REF and NEMO_REV_REF in param.cfg'
542   echo ''
543 fi
544
545done
546#
547exit
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