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sette_test-cases.sh in NEMO/branches/2019/fix_sette_ticket2239 – NEMO

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source: NEMO/branches/2019/fix_sette_ticket2239/sette_test-cases.sh @ 10713

Last change on this file since 10713 was 10698, checked in by mathiot, 5 years ago
check exit code from NEMO (do not copy anything if it failed on exit code other than 0/123456/999) + rename run.stat/tracer.stat/ocean.output to *_old in the current validation dir (ticket #2239)
Property svn:executable set to ``*
File size: 30.0 KB

Rev	Line
[9268]	1	#!/bin/bash
	2	############################################################
	3	# Author : Simona Flavoni for NEMO
	4	# Contact: sflod@locean-ipsl.upmc.fr
	5	#
	6	# sette_test-cases.sh : principal script of SET TEsts for NEMO (SETTE)
	7	# : this script : compiles, run and tests TEST_CASES
	8	#
	9	# : TO DO: test if nitend is equal to end of run.stat
	10	# ----------------------------------------------------------------------
	11	# NEMO/SETTE , NEMO Consortium (2018)
	12	# Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
	13	# ----------------------------------------------------------------------
	14	#
	15	#############################################################
	16	#set -vx
	17	set -o posix
	18	#set -u
	19	#set -e
	20	# ===========
	21	# DESCRIPTION
	22	# ===========
	23	#
	24	# Variables to be checked by user:
	25	#
	26	# COMPILER : name of compiler as defined in NEMOGCM/ARCH directory
	27	# BATCH_COMMAND_PAR : name of the command for submitting parallel batch jobs
	28	# BATCH_COMMAND_SEQ : name of the command for submitting sequential batch jobs
	29	# INTERACT_FLAG : flag to run in interactive mode "yes"
	30	# to run in batch mode "no"
	31	# MPIRUN_FLAG : flag to run in parallel (MPI) "yes"
	32	# to run in sequential mode (NB_PROC = 1) "no"
	33	# USING_XIOS : flag to control the activation of key_iomput
	34	# "yes" to compile using key_iomput and link to the external XIOS library
	35	# "no" to compile without key_iomput and link to the old IOIPSL library
	36	# USING_MPMD : flag to control the use of stand-alone IO servers
	37	# requires USING_XIOS="yes"
	38	# "yes" to run in MPMD (detached) mode with stand-alone IO servers
	39	# "no" to run in SPMD (attached) mode without separate IO servers
	40	# NUM_XIOSERVERS : number of stand-alone IO servers to employ
	41	# set to zero if USING_MPMD="no"
	42	#
	43	# Principal script is sette_test-cases.sh, that calls
	44	#
	45	# makenemo : to create successive exectuables in ${CONFIG_NAME}/BLD/bin/nemo.exe
[9576]	46	# and links to nemo in ${CONFIG_NAME}/EXP00)
[9268]	47	#
	48	# param.cfg : sets and loads following directories:
	49	#
	50	# FORCING_DIR : is the directory for forcing files (tarfile)
	51	# INPUT_DIR : is the directory for input files storing
	52	# TMPDIR : is the temporary directory (if needed)
	53	# NEMO_VALIDATION_DIR : is the validation directory
	54	#
	55	# (NOTE: this file is the same for all configrations to be tested with sette_test-cases.sh)
	56	#
	57	# all_functions.sh : loads functions used by sette (note: new functions can be added here)
	58	# set_namelist : function declared in all_functions that sets namelist parameters
	59	# post_test_tidyup : creates validation storage directory and copies required output files
	60	# (run.stat and ocean.output) in it after execution of test.
	61	#
[10698]	62	# clean_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
	63	# ( not doing it could lead to false positive )
	64	#
[9268]	65	# VALIDATION tree is:
	66	#
	67	# NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE)
	68	#
	69	# prepare_exe_dir.sh : defines and creates directory where the test is executed
	70	# execution directory takes name of TEST_NAME defined for every test
	71	# in sette_test-cases.sh. (each test in executed in its own directory)
	72	#
	73	# prepare_job.sh : to generate the script run_job.sh
	74	#
	75	# fcm_job.sh : run in batch (INTERACT_FLAG="no") or interactive (INTERACT_FLAG="yes")
	76	# see sette_test-cases.sh and BATCH_TEMPLATE directory
	77	#
	78	# NOTE: jobs requiring initial or forcing data need to have an input_CONFIG.cfg in which
	79	# can be found paths to the input tar file)
	80	# NOTE: if job is not launched for any reason you have the executable ready in ${EXE_DIR}
	81	# directory
	82	# NOTE: the changed namelists are left in ${EXE_DIR} directory whereas original namelists
	83	# remain in ${NEW_CONF}/EXP00
	84	#
	85	# NOTE: a log file, output.sette, is created in ${SETTE_DIR} with the echoes of
	86	# executed commands
	87	#
	88	# NOTE: if sette_test-cases.sh is stopped in output.sette there is written the last command
	89	# executed by sette_test-cases.sh
	90	#
	91	# example use: ./sette_test-cases.sh
	92	#########################################################################################
	93	#
[10687]	94	# LOAD param value
	95	. ./param.cfg
[9268]	96
[10687]	97	export BATCH_COMMAND_PAR=${BATCH_CMD}
	98	export BATCH_COMMAND_SEQ=${BATCH_CMD}
[9268]	99	export INTERACT_FLAG="no"
	100	export MPIRUN_FLAG="yes"
	101	export USING_XIOS="yes"
	102	#
	103	export DEL_KEYS="key_iomput"
	104	if [ ${USING_XIOS} == "yes" ]
	105	then
	106	export DEL_KEYS=""
	107	fi
	108	#
[10687]	109	export ADD_KEYS=""
	110	if [ ${ADD_NOSIGNEDZERO} == "yes" ]
	111	then
	112	export ADD_KEYS="key_nosignedzero"
	113	fi
	114	#
[9268]	115	# Settings which control the use of stand alone servers (only relevant if using xios)
	116	#
	117	export USING_MPMD="no"
	118	export NUM_XIOSERVERS=4
	119	export JOB_PREFIX=batch-mpmd
	120	#
	121	if [ ${USING_MPMD} == "no" ]
	122	then
	123	export NUM_XIOSERVERS=0
	124	export JOB_PREFIX=batch
	125	fi
	126	#
	127	#
[10687]	128	if [ ${USING_MPMD} == "yes" ] && [ ${USING_XIOS} == "no" ]
[9268]	129	then
	130	echo "Incompatible choices. MPMD mode requires the XIOS server"
	131	exit
	132	fi
	133
	134	# Directory to run the tests
	135	SETTE_DIR=$(cd $(dirname "$0"); pwd)
	136	MAIN_DIR=$(dirname $SETTE_DIR)
[9602]	137	CONFIG_DIR0=${MAIN_DIR}/cfgs
[9605]	138	TOOLS_DIR=${MAIN_DIR}/tools
[9268]	139
	140	CMP_NAM=${1:-$COMPILER}
	141	# Copy job_batch_COMPILER file for specific compiler into job_batch_template
	142	cd ${SETTE_DIR}
	143	cp BATCH_TEMPLATE/${JOB_PREFIX}-${COMPILER} job_batch_template \|\| exit
	144	# Description of configuration tested:
	145	# OVERFLOW : 1 TEST s-coordinates : (tracers) Advection schemes: FCT2, FCT4, ubs
	146	# & (dynamics) advection schemes: flux form (ubs, centered), vector form (een)
	147	# zps-coordinates : (tracers) Advection schemes: FCT2, FCT4, ubs
	148	# & (dynamics) advection schemes: flux form (ubs, centered), vector form (een, and een + Hollingsworth correction)
	149	# LOCK_EXCHANGE : 2
	150	# VORTEX : 3
[10517]	151	# ICE_AGRIF : 4
[9744]	152	# ISOMIP : 5
	153	# WAD
[9268]	154
	155
[9744]	156	for config in 1 2 3 4 5
[9268]	157	do
	158
[9524]	159	# ---------
	160	# OVERFLOW
	161	# ---------
[9268]	162	if [ ${config} -eq 1 ] ; then
	163	## Restartability tests for OVERFLOW
	164	export TEST_NAME="LONG"
[9708]	165	cd ${MAIN_DIR}
[10690]	166	. ./makenemo -m ${CMP_NAM} -n OVERFLOW_ST -a OVERFLOW -j 8 add_key ${ADD_KEYS} del_key ${DEL_KEYS}
[9268]	167	cd ${SETTE_DIR}
	168	. ./param.cfg
	169	. ./all_functions.sh
	170	. ./prepare_exe_dir.sh
[10698]	171	clean_valid_dir
[9268]	172	JOB_FILE=${EXE_DIR}/run_job.sh
	173	NPROC=1
	174	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	175	cd ${EXE_DIR}
	176	set_namelist namelist_cfg cn_exp \"OVF_LONG\"
	177	set_namelist namelist_cfg nn_it000 1
	178	set_namelist namelist_cfg nn_itend 120
	179	set_namelist namelist_cfg nn_stock 60
[10575]	180	set_namelist namelist_cfg ln_ctl .false.
	181	set_namelist namelist_cfg sn_cfctl%l_config .true.
	182	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9268]	183	if [ ${USING_MPMD} == "yes" ] ; then
	184	set_xio_using_server iodef.xml true
	185	else
	186	set_xio_using_server iodef.xml false
	187	fi
	188	cd ${SETTE_DIR}
	189	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
	190
	191	cd ${SETTE_DIR}
	192	export TEST_NAME="SHORT"
	193	. ./prepare_exe_dir.sh
[10698]	194	clean_valid_dir
[9268]	195	cd ${EXE_DIR}
	196	set_namelist namelist_cfg cn_exp \"OVF_SHORT\"
	197	set_namelist namelist_cfg nn_it000 61
	198	set_namelist namelist_cfg nn_itend 120
	199	set_namelist namelist_cfg nn_stock 60
[10575]	200	set_namelist namelist_cfg ln_ctl .false.
	201	set_namelist namelist_cfg sn_cfctl%l_config .true.
	202	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9268]	203	set_namelist namelist_cfg ln_rstart .true.
	204	set_namelist namelist_cfg nn_rstctl 2
	205	set_namelist namelist_cfg cn_ocerst_in \"OVF_LONG_00000060_restart\"
	206	if [ ${USING_MPMD} == "yes" ] ; then
	207	set_xio_using_server iodef.xml true
	208	else
	209	set_xio_using_server iodef.xml false
	210	fi
	211	ln -sf ../LONG/OVF_LONG_00000060_restart.nc .
[9756]	212
[9268]	213	cd ${SETTE_DIR}
	214	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
	215	cd ${SETTE_DIR}
	216	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	217
	218
	219	## Test for all advection, vert. coordinates, vector form, flux form: test runability and complete all time steps
	220	## Needed namelist-xxxx for every type of run tested
	221	cd ${CONFIG_DIR}/${NEW_CONF}/EXP00
	222
	223	for file in $(echo `ls namelist_*_cfg `) ; do
[9963]	224	TEST_NAME=`echo $file \| sed -e "s/namelist_//" \| sed -e "s/_cfg//"`
[9268]	225	TEST_NAME="EXP-${TEST_NAME}"
[9963]	226	if [ ! -d ${CONFIG_DIR}/${NEW_CONF}/${TEST_NAME} ] ; then mkdir ${CONFIG_DIR}/${NEW_CONF}/${TEST_NAME} ; fi
[9268]	227	export TEST_NAME="${TEST_NAME}"
	228	##
	229	cd ${SETTE_DIR}
	230	. ./param.cfg
	231	. ./all_functions.sh
	232	. ./prepare_exe_dir.sh
[10698]	233	clean_valid_dir
[9268]	234	JOB_FILE=${EXE_DIR}/run_job.sh
	235	NPROC=1
	236	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	237	cd ${EXE_DIR}
[9963]	238	rm namelist____
	239	cp -pL ${CONFIG_DIR}/${NEW_CONF}/EXP00/$file namelist_cfg
[9268]	240	if [ ${USING_MPMD} == "yes" ] ; then
	241	set_xio_using_server iodef.xml true
	242	else
	243	set_xio_using_server iodef.xml false
	244	fi
	245	cd ${SETTE_DIR}
	246	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
	247	cd ${SETTE_DIR}
	248	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	249	##
	250	done
	251	fi
	252
[9524]	253	# --------------
	254	# LOCK_EXCHANGE
	255	# --------------
[9268]	256	if [ ${config} -eq 2 ] ; then
	257	## Restartability tests for LOCK_EXCHANGE
	258	export TEST_NAME="LONG"
[9708]	259	cd ${MAIN_DIR}
[10690]	260	. ./makenemo -m ${CMP_NAM} -n LOCK_EXCHANGE_ST -a LOCK_EXCHANGE -j 8 add_key ${ADD_KEYS} del_key ${DEL_KEYS}
[9268]	261	cd ${SETTE_DIR}
	262	. ./param.cfg
	263	. ./all_functions.sh
	264	. ./prepare_exe_dir.sh
[10698]	265	clean_valid_dir
[9268]	266	JOB_FILE=${EXE_DIR}/run_job.sh
	267	NPROC=1
	268	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	269	cd ${EXE_DIR}
	270	set_namelist namelist_cfg cn_exp \"LOCK_LONG\"
	271	set_namelist namelist_cfg nn_it000 1
	272	set_namelist namelist_cfg nn_stock 60
[10575]	273	set_namelist namelist_cfg ln_ctl .false.
	274	set_namelist namelist_cfg sn_cfctl%l_config .true.
	275	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9268]	276	set_namelist namelist_cfg nn_itend 120
	277	if [ ${USING_MPMD} == "yes" ] ; then
	278	set_xio_using_server iodef.xml true
	279	else
	280	set_xio_using_server iodef.xml false
	281	fi
	282	cd ${SETTE_DIR}
	283	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
	284
	285	cd ${SETTE_DIR}
	286	export TEST_NAME="SHORT"
	287	. ./prepare_exe_dir.sh
[10698]	288	clean_valid_dir
[9268]	289	cd ${EXE_DIR}
	290	set_namelist namelist_cfg cn_exp \"LOCK_SHORT\"
	291	set_namelist namelist_cfg nn_it000 61
	292	set_namelist namelist_cfg nn_itend 120
	293	set_namelist namelist_cfg nn_stock 60
[10575]	294	set_namelist namelist_cfg ln_ctl .false.
	295	set_namelist namelist_cfg sn_cfctl%l_config .true.
	296	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9268]	297	set_namelist namelist_cfg ln_rstart .true.
	298	set_namelist namelist_cfg nn_rstctl 2
	299	set_namelist namelist_cfg cn_ocerst_in \"LOCK_LONG_00000060_restart\"
	300	if [ ${USING_MPMD} == "yes" ] ; then
	301	set_xio_using_server iodef.xml true
	302	else
	303	set_xio_using_server iodef.xml false
	304	fi
	305	ln -sf ../LONG/LOCK_LONG_00000060_restart.nc .
[9756]	306
[9268]	307	cd ${SETTE_DIR}
	308	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
	309	cd ${SETTE_DIR}
	310	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	311
	312	## Test for all advection, vector form, flux form: test runability and complete all time steps
	313	## Needed namelist-xxxx for every type of run tested
	314	cd ${CONFIG_DIR}/${NEW_CONF}/EXP00
	315
	316	for file in $(echo `ls namelist_*_cfg `) ; do
[10242]	317	echo ''
	318	TEST_NAME=`echo $file \| sed -e "s/namelist_//" \| sed -e "s/_cfg//"`
[9268]	319	TEST_NAME="EXP-${TEST_NAME}"
	320	`mkdir ${CONFIG_DIR}/${NEW_CONF}/${TEST_NAME}`
	321	export TEST_NAME="${TEST_NAME}"
[10242]	322	##
[9268]	323	cd ${SETTE_DIR}
	324	. ./param.cfg
	325	. ./all_functions.sh
	326	. ./prepare_exe_dir.sh
[10698]	327	clean_valid_dir
[9268]	328	JOB_FILE=${EXE_DIR}/run_job.sh
	329	NPROC=1
	330	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	331	cd ${EXE_DIR}
[10242]	332	rm namelist____
	333	cp -pL ${CONFIG_DIR}/${NEW_CONF}/EXP00/$file namelist_cfg
[9268]	334	if [ ${USING_MPMD} == "yes" ] ; then
	335	set_xio_using_server iodef.xml true
	336	else
	337	set_xio_using_server iodef.xml false
	338	fi
	339	cd ${SETTE_DIR}
	340	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
	341	cd ${SETTE_DIR}
	342	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[10242]	343	##
	344	echo ''
[9268]	345	done
	346	fi
	347
[9524]	348	# ---------
	349	# VORTEX
	350	# ---------
[9756]	351	if [ ${config} -eq 3 ] ; then
	352	## Restartability tests for VORTEX
[9268]	353	export TEST_NAME="LONG"
[9708]	354	cd ${MAIN_DIR}
[10690]	355	. ./makenemo -m ${CMP_NAM} -n VORTEX_ST -a VORTEX -j 8 add_key ${ADD_KEYS} del_key ${DEL_KEYS}
[9268]	356	cd ${SETTE_DIR}
	357	. ./param.cfg
	358	. ./all_functions.sh
	359	. ./prepare_exe_dir.sh
[10698]	360	clean_valid_dir
[9268]	361	JOB_FILE=${EXE_DIR}/run_job.sh
[9756]	362	NPROC=6
	363	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[9268]	364	cd ${EXE_DIR}
	365	set_namelist namelist_cfg cn_exp \"VORTEX_LONG\"
	366	set_namelist namelist_cfg nn_it000 1
[9756]	367	set_namelist namelist_cfg nn_itend 240
	368	set_namelist namelist_cfg nn_stock 120
[10575]	369	set_namelist namelist_cfg ln_ctl .false.
	370	set_namelist namelist_cfg sn_cfctl%l_config .true.
	371	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[10433]	372
[9756]	373	set_namelist 1_namelist_cfg cn_exp \"VORTEX_LONG\"
	374	set_namelist 1_namelist_cfg nn_it000 1
	375	set_namelist 1_namelist_cfg nn_itend 720
	376	set_namelist 1_namelist_cfg nn_stock 360
[10575]	377	set_namelist 1_namelist_cfg ln_ctl .false.
	378	set_namelist 1_namelist_cfg sn_cfctl%l_config .true.
	379	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[10433]	380
[9268]	381	if [ ${USING_MPMD} == "yes" ] ; then
[9756]	382	set_xio_using_server iodef.xml true
[9268]	383	else
[9756]	384	set_xio_using_server iodef.xml false
[9268]	385	fi
	386	cd ${SETTE_DIR}
	387	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
[9756]	388
[9268]	389	cd ${SETTE_DIR}
	390	export TEST_NAME="SHORT"
	391	. ./prepare_exe_dir.sh
[10698]	392	clean_valid_dir
[9268]	393	cd ${EXE_DIR}
	394	set_namelist namelist_cfg cn_exp \"VORTEX_SHORT\"
[9756]	395	set_namelist namelist_cfg nn_it000 121
	396	set_namelist namelist_cfg nn_itend 240
	397	set_namelist namelist_cfg nn_stock 120
[10575]	398	set_namelist namelist_cfg ln_ctl .false.
	399	set_namelist namelist_cfg sn_cfctl%l_config .true.
	400	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9268]	401	set_namelist namelist_cfg ln_rstart .true.
	402	set_namelist namelist_cfg nn_rstctl 2
[9756]	403	set_namelist namelist_cfg cn_ocerst_in \"VORTEX_LONG_00000120_restart\"
	404
	405	set_namelist 1_namelist_cfg cn_exp \"VORTEX_SHORT\"
	406	set_namelist 1_namelist_cfg nn_it000 361
	407	set_namelist 1_namelist_cfg nn_itend 720
[10575]	408	set_namelist 1_namelist_cfg ln_ctl .false.
	409	set_namelist 1_namelist_cfg sn_cfctl%l_config .true.
	410	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9756]	411	set_namelist 1_namelist_cfg nn_stock 360
	412	set_namelist 1_namelist_cfg ln_rstart .true.
	413	set_namelist 1_namelist_cfg nn_rstctl 2
	414	set_namelist 1_namelist_cfg cn_ocerst_in \"VORTEX_LONG_00000360_restart\"
	415
[9268]	416	if [ ${USING_MPMD} == "yes" ] ; then
[9756]	417	set_xio_using_server iodef.xml true
	418	else
	419	set_xio_using_server iodef.xml false
	420	fi
	421	if [ $NPROC -eq 1 ] ; then
	422	ln -sf ../LONG/VORTEX_LONG_00000120_restart.nc .
	423	ln -sf ../LONG/1_VORTEX_LONG_00000360_restart.nc .
	424	else
	425	for (( i=1; i<=$NPROC; i++)) ; do
	426	L_NPROC=$(( $i - 1 ))
	427	L_NPROC=`printf "%04d\n" ${L_NPROC}`
	428	ln -sf ../LONG/VORTEX_LONG_00000120_restart_${L_NPROC}.nc .
	429	ln -sf ../LONG/1_VORTEX_LONG_00000360_restart_${L_NPROC}.nc .
	430	done
	431	fi
	432	cd ${SETTE_DIR}
	433	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
	434	cd ${SETTE_DIR}
	435	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	436
	437	## Reproducibility tests for VORTEX
	438	export TEST_NAME="REPRO_2_3"
	439	cd ${MAIN_DIR}
	440	cd ${SETTE_DIR}
	441	. ./param.cfg
	442	. ./all_functions.sh
	443	. ./prepare_exe_dir.sh
[10698]	444	clean_valid_dir
[9756]	445	JOB_FILE=${EXE_DIR}/run_job.sh
	446	NPROC=6
	447	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	448	cd ${EXE_DIR}
	449	set_namelist namelist_cfg cn_exp \"VORTEX_23\"
	450	set_namelist namelist_cfg nn_it000 1
	451	set_namelist namelist_cfg nn_itend 240
	452	set_namelist namelist_cfg nn_stock 120
	453	set_namelist namelist_cfg jpni 2
	454	set_namelist namelist_cfg jpnj 3
[10575]	455	set_namelist namelist_cfg ln_ctl .false.
	456	set_namelist namelist_cfg sn_cfctl%l_config .true.
	457	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[10427]	458
[9756]	459	set_namelist 1_namelist_cfg cn_exp \"VORTEX_23\"
	460	set_namelist 1_namelist_cfg nn_it000 1
	461	set_namelist 1_namelist_cfg nn_itend 720
	462	set_namelist 1_namelist_cfg nn_stock 360
	463	set_namelist 1_namelist_cfg jpni 2
	464	set_namelist 1_namelist_cfg jpnj 3
[10575]	465	set_namelist 1_namelist_cfg ln_ctl .false.
	466	set_namelist 1_namelist_cfg sn_cfctl%l_config .true.
	467	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9756]	468
	469	if [ ${USING_MPMD} == "yes" ] ; then
[9268]	470	set_xio_using_server iodef.xml true
	471	else
	472	set_xio_using_server iodef.xml false
	473	fi
[9756]	474	cd ${SETTE_DIR}
	475	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
	476	cd ${SETTE_DIR}
	477	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	478
	479	cd ${SETTE_DIR}
	480	export TEST_NAME="REPRO_3_2"
	481	. ./prepare_exe_dir.sh
[10698]	482	clean_valid_dir
[9756]	483	JOB_FILE=${EXE_DIR}/run_job.sh
	484	NPROC=6
	485	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	486	cd ${EXE_DIR}
	487
	488	set_namelist namelist_cfg cn_exp \"VORTEX_32\"
	489	set_namelist namelist_cfg nn_it000 1
	490	set_namelist namelist_cfg nn_itend 240
	491	set_namelist namelist_cfg nn_stock 120
	492	set_namelist namelist_cfg jpni 3
	493	set_namelist namelist_cfg jpnj 2
[10575]	494	set_namelist namelist_cfg ln_ctl .false.
	495	set_namelist namelist_cfg sn_cfctl%l_config .true.
	496	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[10427]	497
[9756]	498	set_namelist 1_namelist_cfg cn_exp \"VORTEX_32\"
	499	set_namelist 1_namelist_cfg nn_it000 1
	500	set_namelist 1_namelist_cfg nn_itend 720
	501	set_namelist 1_namelist_cfg nn_stock 360
	502	set_namelist 1_namelist_cfg jpni 3
	503	set_namelist 1_namelist_cfg jpnj 2
[10575]	504	set_namelist 1_namelist_cfg ln_ctl .false.
	505	set_namelist 1_namelist_cfg sn_cfctl%l_config .true.
	506	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[10427]	507
[9268]	508	if [ ${USING_MPMD} == "yes" ] ; then
	509	set_xio_using_server iodef.xml true
	510	else
	511	set_xio_using_server iodef.xml false
	512	fi
	513	cd ${SETTE_DIR}
	514	. ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
	515	cd ${SETTE_DIR}
	516	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	517
	518	fi
	519
[9458]	520
[9524]	521	# ---------
[10517]	522	# ICE_AGRIF
[9524]	523	# ---------
[9744]	524	if [ ${config} -eq 4 ] ; then
[10517]	525	## Restartability tests for ICE_AGRIF
[9458]	526	export TEST_NAME="LONG"
[9708]	527	cd ${MAIN_DIR}
[10690]	528	. ./makenemo -m ${CMP_NAM} -n ICE_AGRIF_ST -a ICE_AGRIF -j 8 add_key ${ADD_KEYS} del_key ${DEL_KEYS}
[9458]	529	cd ${SETTE_DIR}
	530	. ./param.cfg
	531	. ./all_functions.sh
	532	. ./prepare_exe_dir.sh
[10698]	533	clean_valid_dir
[9458]	534	JOB_FILE=${EXE_DIR}/run_job.sh
[9756]	535	NPROC=6
[9458]	536	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	537	cd ${EXE_DIR}
[10517]	538	set_namelist namelist_cfg cn_exp \"ICE_AGRIF_LONG\"
[9458]	539	set_namelist namelist_cfg nn_it000 1
	540	set_namelist namelist_cfg nn_itend 200
[10575]	541	set_namelist namelist_cfg ln_ctl .false.
	542	set_namelist namelist_cfg sn_cfctl%l_config .true.
	543	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9458]	544	set_namelist namelist_cfg nn_stock 100
	545
[10517]	546	set_namelist 1_namelist_cfg cn_exp \"ICE_AGRIF_LONG\"
[9458]	547	set_namelist 1_namelist_cfg nn_it000 1
	548	set_namelist 1_namelist_cfg nn_itend 600
[10575]	549	set_namelist 1_namelist_cfg ln_ctl .false.
	550	set_namelist 1_namelist_cfg sn_cfctl%l_config .true.
	551	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9458]	552	set_namelist 1_namelist_cfg nn_stock 300
	553
	554	if [ ${USING_MPMD} == "yes" ] ; then
	555	set_xio_using_server iodef.xml true
	556	else
	557	set_xio_using_server iodef.xml false
	558	fi
	559	cd ${SETTE_DIR}
[10517]	560	. ./prepare_job.sh input_ICE_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
[9458]	561
	562	cd ${SETTE_DIR}
	563	export TEST_NAME="SHORT"
	564	. ./prepare_exe_dir.sh
[10698]	565	clean_valid_dir
[9458]	566	cd ${EXE_DIR}
[10517]	567	set_namelist namelist_cfg cn_exp \"ICE_AGRIF_SHORT\"
[9458]	568	set_namelist namelist_cfg nn_it000 101
	569	set_namelist namelist_cfg nn_itend 200
[10575]	570	set_namelist namelist_cfg ln_ctl .false.
	571	set_namelist namelist_cfg sn_cfctl%l_config .true.
	572	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9458]	573	set_namelist namelist_cfg nn_stock 100
	574	set_namelist namelist_cfg ln_rstart .true.
	575	set_namelist namelist_cfg nn_rstctl 2
[10517]	576	set_namelist namelist_cfg cn_ocerst_in \"ICE_AGRIF_LONG_00000100_restart\"
	577	set_namelist namelist_ice_cfg cn_icerst_in \"ICE_AGRIF_LONG_00000100_restart_ice\"
[9458]	578
[10517]	579	set_namelist 1_namelist_cfg cn_exp \"ICE_AGRIF_SHORT\"
[9458]	580	set_namelist 1_namelist_cfg nn_it000 301
	581	set_namelist 1_namelist_cfg nn_itend 600
[10575]	582	set_namelist 1_namelist_cfg ln_ctl .false.
	583	set_namelist 1_namelist_cfg sn_cfctl%l_config .true.
	584	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9458]	585	set_namelist 1_namelist_cfg nn_stock 300
	586	set_namelist 1_namelist_cfg ln_rstart .true.
	587	set_namelist 1_namelist_cfg nn_rstctl 2
[10517]	588	set_namelist 1_namelist_cfg cn_ocerst_in \"ICE_AGRIF_LONG_00000300_restart\"
	589	set_namelist 1_namelist_ice_cfg cn_icerst_in \"ICE_AGRIF_LONG_00000300_restart_ice\"
[9458]	590
	591
	592	if [ ${USING_MPMD} == "yes" ] ; then
	593	set_xio_using_server iodef.xml true
	594	else
	595	set_xio_using_server iodef.xml false
	596	fi
	597	if [ $NPROC -eq 1 ] ; then
[10517]	598	ln -sf ../LONG/ICE_AGRIF_LONG_00000100_restart.nc .
	599	ln -sf ../LONG/ICE_AGRIF_LONG_00000100_restart_ice.nc .
	600	ln -sf ../LONG/1_ICE_AGRIF_LONG_00000300_restart.nc .
	601	ln -sf ../LONG/1_ICE_AGRIF_LONG_00000300_restart_ice.nc .
[9458]	602	else
	603	for (( i=1; i<=$NPROC; i++)) ; do
	604	L_NPROC=$(( $i - 1 ))
	605	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[10517]	606	ln -sf ../LONG/ICE_AGRIF_LONG_00000100_restart_${L_NPROC}.nc .
	607	ln -sf ../LONG/ICE_AGRIF_LONG_00000100_restart_ice_${L_NPROC}.nc .
	608	ln -sf ../LONG/1_ICE_AGRIF_LONG_00000300_restart_${L_NPROC}.nc .
	609	ln -sf ../LONG/1_ICE_AGRIF_LONG_00000300_restart_ice_${L_NPROC}.nc .
[9458]	610	done
	611	fi
[9756]	612
	613	cd ${SETTE_DIR}
[10517]	614	. ./prepare_job.sh input_ICE_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
[9756]	615	cd ${SETTE_DIR}
	616	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	617
	618
[10517]	619	## Reproducibility tests for ICE_AGRIF
[9756]	620	export TEST_NAME="REPRO_2_3"
	621	cd ${MAIN_DIR}
	622	cd ${SETTE_DIR}
	623	. ./param.cfg
	624	. ./all_functions.sh
	625	. ./prepare_exe_dir.sh
[10698]	626	clean_valid_dir
[9756]	627	JOB_FILE=${EXE_DIR}/run_job.sh
	628	NPROC=6
	629	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	630	cd ${EXE_DIR}
[10517]	631	set_namelist namelist_cfg cn_exp \"ICE_AGRIF_23\"
[9756]	632	set_namelist namelist_cfg nn_it000 1
	633	set_namelist namelist_cfg nn_itend 200
	634	set_namelist namelist_cfg nn_stock 100
	635	set_namelist namelist_cfg jpni 2
	636	set_namelist namelist_cfg jpnj 3
[10575]	637	set_namelist namelist_cfg ln_ctl .false.
	638	set_namelist namelist_cfg sn_cfctl%l_config .true.
	639	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9756]	640
[10517]	641	set_namelist 1_namelist_cfg cn_exp \"ICE_AGRIF_23\"
[9756]	642	set_namelist 1_namelist_cfg nn_it000 1
	643	set_namelist 1_namelist_cfg nn_itend 600
	644	set_namelist 1_namelist_cfg nn_stock 300
	645	set_namelist 1_namelist_cfg jpni 2
	646	set_namelist 1_namelist_cfg jpnj 3
[10575]	647	set_namelist 1_namelist_cfg ln_ctl .false.
	648	set_namelist 1_namelist_cfg sn_cfctl%l_config .true.
	649	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9756]	650
[9458]	651	if [ ${USING_MPMD} == "yes" ] ; then
[9756]	652	set_xio_using_server iodef.xml true
[9458]	653	else
[9756]	654	set_xio_using_server iodef.xml false
[9458]	655	fi
[9756]	656	cd ${SETTE_DIR}
[10517]	657	. ./prepare_job.sh input_ICE_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
[9756]	658	cd ${SETTE_DIR}
	659	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	660
	661	cd ${SETTE_DIR}
	662	export TEST_NAME="REPRO_3_2"
	663	. ./prepare_exe_dir.sh
[10698]	664	clean_valid_dir
[9756]	665	JOB_FILE=${EXE_DIR}/run_job.sh
	666	NPROC=6
	667	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	668	cd ${EXE_DIR}
	669
[10517]	670	set_namelist namelist_cfg cn_exp \"ICE_AGRIF_32\"
[9756]	671	set_namelist namelist_cfg nn_it000 1
	672	set_namelist namelist_cfg nn_itend 200
	673	set_namelist namelist_cfg nn_stock 100
	674	set_namelist namelist_cfg jpni 3
	675	set_namelist namelist_cfg jpnj 2
[10575]	676	set_namelist namelist_cfg ln_ctl .false.
	677	set_namelist namelist_cfg sn_cfctl%l_config .true.
	678	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9756]	679
[10517]	680	set_namelist 1_namelist_cfg cn_exp \"ICE_AGRIF_32\"
[9756]	681	set_namelist 1_namelist_cfg nn_it000 1
	682	set_namelist 1_namelist_cfg nn_itend 600
	683	set_namelist 1_namelist_cfg nn_stock 300
	684	set_namelist 1_namelist_cfg jpni 3
	685	set_namelist 1_namelist_cfg jpnj 2
[10575]	686	set_namelist 1_namelist_cfg ln_ctl .false.
	687	set_namelist 1_namelist_cfg sn_cfctl%l_config .true.
	688	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9756]	689
[9458]	690	if [ ${USING_MPMD} == "yes" ] ; then
[9756]	691	set_xio_using_server iodef.xml true
[9458]	692	else
[9756]	693	set_xio_using_server iodef.xml false
[9458]	694	fi
	695	cd ${SETTE_DIR}
[10517]	696	. ./prepare_job.sh input_ICE_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
[9458]	697	cd ${SETTE_DIR}
	698	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[9756]	699
[9458]	700	fi
	701
[9518]	702	# ------
	703	# ISOMIP
	704	# ------
[9744]	705	if [ ${config} -eq 5 ] ; then
[9518]	706	## Restartability tests
	707	export TEST_NAME="LONG"
[9708]	708	cd ${MAIN_DIR}
[10690]	709	. ./makenemo -m ${CMP_NAM} -n ISOMIP_ST -a ISOMIP -j 8 add_key ${ADD_KEYS} del_key ${DEL_KEYS}
[9518]	710	cd ${SETTE_DIR}
	711	. ./param.cfg
	712	. ./all_functions.sh
	713	. ./prepare_exe_dir.sh
[10698]	714	clean_valid_dir
[9518]	715	JOB_FILE=${EXE_DIR}/run_job.sh
	716	NPROC=15
	717	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	718	cd ${EXE_DIR}
	719	set_namelist namelist_cfg cn_exp \"ISOMIP_LONG\"
	720	set_namelist namelist_cfg nn_it000 1
	721	set_namelist namelist_cfg nn_itend 96
	722	set_namelist namelist_cfg nn_stock 48
	723	set_namelist namelist_cfg jpni 5
	724	set_namelist namelist_cfg jpnj 3
[10575]	725	set_namelist namelist_cfg ln_ctl .false.
	726	set_namelist namelist_cfg sn_cfctl%l_config .true.
	727	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9518]	728	if [ ${USING_MPMD} == "yes" ] ; then
	729	set_xio_using_server iodef.xml true
	730	else
	731	set_xio_using_server iodef.xml false
	732	fi
	733	cd ${SETTE_DIR}
	734	. ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
	735
	736	cd ${SETTE_DIR}
	737	export TEST_NAME="SHORT"
	738	. ./prepare_exe_dir.sh
[10698]	739	clean_valid_dir
[9518]	740	cd ${EXE_DIR}
	741	set_namelist namelist_cfg cn_exp \"ISOMIP_SHORT\"
	742	set_namelist namelist_cfg nn_it000 49
	743	set_namelist namelist_cfg nn_itend 96
	744	set_namelist namelist_cfg nn_stock 48
	745	set_namelist namelist_cfg ln_rstart .true.
	746	set_namelist namelist_cfg nn_rstctl 2
	747	set_namelist namelist_cfg jpni 5
	748	set_namelist namelist_cfg jpnj 3
[10575]	749	set_namelist namelist_cfg ln_ctl .false.
	750	set_namelist namelist_cfg sn_cfctl%l_config .true.
	751	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9518]	752	set_namelist namelist_cfg cn_ocerst_in \"ISOMIP_LONG_00000048_restart\"
	753	if [ ${USING_MPMD} == "yes" ] ; then
	754	set_xio_using_server iodef.xml true
	755	else
	756	set_xio_using_server iodef.xml false
	757	fi
	758	for (( i=1; i<=$NPROC; i++)) ; do
	759	L_NPROC=$(( $i - 1 ))
	760	L_NPROC=`printf "%04d\n" ${L_NPROC}`
	761	ln -sf ../LONG/ISOMIP_LONG_00000048_restart_${L_NPROC}.nc .
	762	done
[9756]	763
[9518]	764	cd ${SETTE_DIR}
	765	. ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
	766	cd ${SETTE_DIR}
	767	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	768
	769	## Reproducibility tests
	770	export TEST_NAME="REPRO_7_3"
[9708]	771	cd ${MAIN_DIR}
[9518]	772	cd ${SETTE_DIR}
	773	. ./param.cfg
	774	. ./all_functions.sh
	775	. ./prepare_exe_dir.sh
[10698]	776	clean_valid_dir
[9518]	777	JOB_FILE=${EXE_DIR}/run_job.sh
	778	NPROC=21
	779	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	780	cd ${EXE_DIR}
	781	set_namelist namelist_cfg cn_exp \"ISOMIP_73\"
	782	set_namelist namelist_cfg nn_it000 1
	783	set_namelist namelist_cfg nn_itend 48
	784	set_namelist namelist_cfg jpni 7
	785	set_namelist namelist_cfg jpnj 3
[10575]	786	set_namelist namelist_cfg ln_ctl .false.
	787	set_namelist namelist_cfg sn_cfctl%l_config .true.
	788	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9518]	789	if [ ${USING_MPMD} == "yes" ] ; then
	790	set_xio_using_server iodef.xml true
	791	else
	792	set_xio_using_server iodef.xml false
	793	fi
	794	cd ${SETTE_DIR}
	795	. ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
	796	cd ${SETTE_DIR}
	797	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	798
	799	cd ${SETTE_DIR}
	800	export TEST_NAME="REPRO_8_4"
	801	. ./prepare_exe_dir.sh
[10698]	802	clean_valid_dir
[9518]	803	JOB_FILE=${EXE_DIR}/run_job.sh
	804	NPROC=32
	805	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	806	cd ${EXE_DIR}
	807	set_namelist namelist_cfg cn_exp \"ISOMIP_84\"
	808	set_namelist namelist_cfg nn_it000 1
	809	set_namelist namelist_cfg nn_itend 48
	810	set_namelist namelist_cfg jpni 8
	811	set_namelist namelist_cfg jpnj 4
[10575]	812	set_namelist namelist_cfg ln_ctl .false.
	813	set_namelist namelist_cfg sn_cfctl%l_config .true.
	814	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9518]	815	if [ ${USING_MPMD} == "yes" ] ; then
	816	set_xio_using_server iodef.xml true
	817	else
	818	set_xio_using_server iodef.xml false
	819	fi
	820	cd ${SETTE_DIR}
	821	. ./prepare_job.sh input_ISOMIP.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
	822	cd ${SETTE_DIR}
	823	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	824
	825	fi
	826
[9458]	827	#----
[9268]	828	done

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