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iom.F90 in NEMO/branches/2020/dev_12905_xios_restart/src/OCE/IOM – NEMO

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source: NEMO/branches/2020/dev_12905_xios_restart/src/OCE/IOM/iom.F90 @ 12977

Last change on this file since 12977 was 12977, checked in by andmirek, 4 years ago
Ticket #2462 read restart with XIOS in SAS
Property svn:keywords set to `Id`
File size: 125.7 KB

Rev	Line
[544]	1	MODULE iom
[9019]	2	!!======================================================================
[544]	3	!! * MODULE iom *
	4	!! Input/Output manager : Library to read input files
[9019]	5	!!======================================================================
[3764]	6	!! History : 2.0 ! 2005-12 (J. Belier) Original code
	7	!! 2.0 ! 2006-02 (S. Masson) Adaptation to NEMO
	8	!! 3.0 ! 2007-07 (D. Storkey) Changes to iom_gettime
	9	!! 3.4 ! 2012-12 (R. Bourdalle-Badie and G. Reffray) add C1D case
[6140]	10	!! 3.6 ! 2014-15 DIMG format removed
[7646]	11	!! 3.6 ! 2015-15 (J. Harle) Added procedure to read REAL attributes
[9019]	12	!! 4.0 ! 2017-11 (M. Andrejczuk) Extend IOM interface to write any 3D fields
	13	!!----------------------------------------------------------------------
[544]	14
[9019]	15	!!----------------------------------------------------------------------
[544]	16	!! iom_open : open a file read only
	17	!! iom_close : close a file or all files opened by iom
	18	!! iom_get : read a field (interfaced to several routines)
	19	!! iom_varid : get the id of a variable in a file
	20	!! iom_rstput : write a field in a restart file (interfaced to several routines)
[9019]	21	!!----------------------------------------------------------------------
[544]	22	USE dom_oce ! ocean space and time domain
[3764]	23	USE c1d ! 1D vertical configuration
[3294]	24	USE flo_oce ! floats module declarations
[679]	25	USE lbclnk ! lateal boundary condition / mpp exchanges
[544]	26	USE iom_def ! iom variables definitions
	27	USE iom_nf90 ! NetCDF format with native NetCDF library
[2715]	28	USE in_out_manager ! I/O manager
	29	USE lib_mpp ! MPP library
[1412]	30	#if defined key_iomput
[12377]	31	USE sbc_oce , ONLY : nn_fsbc, ght_abl, ghw_abl, e3t_abl, e3w_abl, jpka, jpkam1
[9019]	32	USE icb_oce , ONLY : nclasses, class_num ! !: iceberg classes
[9570]	33	#if defined key_si3
[9019]	34	USE ice , ONLY : jpl
[4691]	35	#endif
[1725]	36	USE domngb ! ocean space and time domain
	37	USE phycst ! physical constants
	38	USE dianam ! build name of file
[3695]	39	USE xios
[1359]	40	# endif
[4148]	41	USE ioipsl, ONLY : ju2ymds ! for calendar
[4152]	42	USE crs ! Grid coarsening
[10222]	43	#if defined key_top
	44	USE trc, ONLY : profsed
	45	#endif
[9367]	46	USE lib_fortran
[12377]	47	USE diu_bulk, ONLY : ln_diurnal_only, ln_diurnal
[12950]	48	USE iom_nf90
	49	USE netcdf
[1359]	50
[544]	51	IMPLICIT NONE
[556]	52	PUBLIC ! must be public to be able to access iom_def through iom
[550]	53
[1457]	54	#if defined key_iomput
[1725]	55	LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .TRUE. !: iom_put flag
[1457]	56	#else
	57	LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .FALSE. !: iom_put flag
	58	#endif
[12377]	59	PUBLIC iom_init, iom_init_closedef, iom_swap, iom_open, iom_close, iom_setkt, iom_varid, iom_get, iom_get_var
[10522]	60	PUBLIC iom_chkatt, iom_getatt, iom_putatt, iom_getszuld, iom_rstput, iom_delay_rst, iom_put
[12377]	61	PUBLIC iom_use, iom_context_finalize, iom_update_file_name, iom_miss_val
[544]	62
[752]	63	PRIVATE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d
	64	PRIVATE iom_g0d, iom_g1d, iom_g2d, iom_g3d, iom_get_123d
[12276]	65	PRIVATE iom_p1d, iom_p2d, iom_p3d, iom_p4d
[1412]	66	#if defined key_iomput
[4148]	67	PRIVATE iom_set_domain_attr, iom_set_axis_attr, iom_set_field_attr, iom_set_file_attr, iom_get_file_attr, iom_set_grid_attr
[12377]	68	PRIVATE set_grid, set_grid_bounds, set_scalar, set_xmlatt, set_mooring, iom_sdate
[12950]	69	PRIVATE iom_set_rst_context, iom_set_rstr_active
[1359]	70	# endif
[12950]	71	PRIVATE iom_set_rstw_active
[752]	72
[544]	73	INTERFACE iom_get
[550]	74	MODULE PROCEDURE iom_g0d, iom_g1d, iom_g2d, iom_g3d
[544]	75	END INTERFACE
[2528]	76	INTERFACE iom_getatt
[10425]	77	MODULE PROCEDURE iom_g0d_iatt, iom_g1d_iatt, iom_g0d_ratt, iom_g1d_ratt, iom_g0d_catt
[2528]	78	END INTERFACE
[7646]	79	INTERFACE iom_putatt
[10425]	80	MODULE PROCEDURE iom_p0d_iatt, iom_p1d_iatt, iom_p0d_ratt, iom_p1d_ratt, iom_p0d_catt
[7646]	81	END INTERFACE
[544]	82	INTERFACE iom_rstput
[550]	83	MODULE PROCEDURE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d
[544]	84	END INTERFACE
[9802]	85	INTERFACE iom_put
[12276]	86	MODULE PROCEDURE iom_p0d, iom_p1d, iom_p2d, iom_p3d, iom_p4d
[9802]	87	END INTERFACE iom_put
	88
[12377]	89	!! * Substitutions
	90	# include "do_loop_substitute.h90"
[544]	91	!!----------------------------------------------------------------------
[9598]	92	!! NEMO/OCE 4.0 , NEMO Consortium (2018)
[1152]	93	!! $Id$
[10068]	94	!! Software governed by the CeCILL license (see ./LICENSE)
[544]	95	!!----------------------------------------------------------------------
	96	CONTAINS
	97
[12961]	98	SUBROUTINE iom_init( cdname, fname, idfp, ld_tmppatch, ld_closedef )
[1359]	99	!!----------------------------------------------------------------------
	100	!! * ROUTINE *
	101	!!
	102	!! ** Purpose :
	103	!!
	104	!!----------------------------------------------------------------------
[9903]	105	CHARACTER(len=*), INTENT(in) :: cdname
[9367]	106	CHARACTER(len=*), OPTIONAL, INTENT(in) :: fname
[12961]	107	INTEGER , OPTIONAL, INTENT(in) :: idfp ! pointer to netcdf file for restart reading with XIOS
[9903]	108	LOGICAL , OPTIONAL, INTENT(in) :: ld_tmppatch
[12377]	109	LOGICAL , OPTIONAL, INTENT(in) :: ld_closedef
[1412]	110	#if defined key_iomput
[9019]	111	!
[7646]	112	TYPE(xios_duration) :: dtime = xios_duration(0, 0, 0, 0, 0, 0)
	113	TYPE(xios_date) :: start_date
[9367]	114	CHARACTER(len=lc) :: clname
[12276]	115	INTEGER :: irefyear, irefmonth, irefday
[12597]	116	INTEGER :: ji
[12957]	117	LOGICAL :: llrst_context ! is context related to restart
[12961]	118	LOGICAL :: llrstr, llrstw
[12957]	119	INTEGER :: inum
[5415]	120	!
[7646]	121	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zt_bnds, zw_bnds
[12377]	122	REAL(wp), DIMENSION(2,jpkam1) :: za_bnds ! ABL vertical boundaries
[9903]	123	LOGICAL :: ll_tmppatch = .TRUE. !: seb: patch before we remove periodicity
	124	INTEGER :: nldi_save, nlei_save !: and close boundaries in output files
	125	INTEGER :: nldj_save, nlej_save !:
[12914]	126	LOGICAL :: ll_closedef
[1359]	127	!!----------------------------------------------------------------------
[9019]	128	!
[9802]	129	! seb: patch before we remove periodicity and close boundaries in output files
[9903]	130	IF( PRESENT(ld_tmppatch) ) THEN ; ll_tmppatch = ld_tmppatch
	131	ELSE ; ll_tmppatch = .TRUE.
	132	ENDIF
	133	IF ( ll_tmppatch ) THEN
[9802]	134	nldi_save = nldi ; nlei_save = nlei
	135	nldj_save = nldj ; nlej_save = nlej
	136	IF( nimpp == 1 ) nldi = 1
	137	IF( nimpp + jpi - 1 == jpiglo ) nlei = jpi
	138	IF( njmpp == 1 ) nldj = 1
	139	IF( njmpp + jpj - 1 == jpjglo ) nlej = jpj
	140	ENDIF
[12914]	141	!
	142	ll_closedef = .TRUE.
[12377]	143	IF ( PRESENT(ld_closedef) ) ll_closedef = ld_closedef
[9802]	144	!
[7646]	145	ALLOCATE( zt_bnds(2,jpk), zw_bnds(2,jpk) )
[9019]	146	!
[12957]	147	IF(lwp) write(numout, *) 'TEST IOM_INIT: ', TRIM(cdname),' File: ', TRIM(fname)
	148	IF(lwp) CALL FLUSH(numout)
[4152]	149	clname = cdname
	150	IF( TRIM(Agrif_CFixed()) /= '0' ) clname = TRIM(Agrif_CFixed())//"_"//TRIM(cdname)
[9570]	151	CALL xios_context_initialize(TRIM(clname), mpi_comm_oce)
[4152]	152	CALL iom_swap( cdname )
[1359]	153
[12961]	154	llrstr = (TRIM(cdname) == TRIM(crxios_context)) .OR. (TRIM(cdname) == TRIM(crixios_context))
	155	llrstr = llrstr .OR. (TRIM(cdname) == TRIM(crtxios_context))
	156	llrstr = llrstr .OR. (TRIM(cdname) == TRIM(crsxios_context))
	157
	158	llrstw = (TRIM(cdname) == TRIM(cwxios_context)) .OR. (TRIM(cdname) == TRIM(cwixios_context))
	159	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwtxios_context))
	160	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwsxios_context))
	161
	162	llrst_context = llrstr .OR. llrstw
	163
[7646]	164	! Calendar type is now defined in xml file
[12276]	165	IF (.NOT.(xios_getvar('ref_year' ,irefyear ))) irefyear = 1900
	166	IF (.NOT.(xios_getvar('ref_month',irefmonth))) irefmonth = 01
	167	IF (.NOT.(xios_getvar('ref_day' ,irefday ))) irefday = 01
	168
[1725]	169	SELECT CASE ( nleapy ) ! Choose calendar for IOIPSL
[12276]	170	CASE ( 1) ; CALL xios_define_calendar( TYPE = "Gregorian", time_origin = xios_date(irefyear,irefmonth,irefday,00,00,00), &
[7646]	171	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
[12276]	172	CASE ( 0) ; CALL xios_define_calendar( TYPE = "NoLeap" , time_origin = xios_date(irefyear,irefmonth,irefday,00,00,00), &
[7646]	173	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
[12276]	174	CASE (30) ; CALL xios_define_calendar( TYPE = "D360" , time_origin = xios_date(irefyear,irefmonth,irefday,00,00,00), &
[7646]	175	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
[1725]	176	END SELECT
[1359]	177
	178	! horizontal grid definition
[9367]	179	IF(.NOT.llrst_context) CALL set_scalar
[9019]	180	!
[5407]	181	IF( TRIM(cdname) == TRIM(cxios_context) ) THEN
[9984]	182	CALL set_grid( "T", glamt, gphit, .FALSE., .FALSE. )
	183	CALL set_grid( "U", glamu, gphiu, .FALSE., .FALSE. )
	184	CALL set_grid( "V", glamv, gphiv, .FALSE., .FALSE. )
	185	CALL set_grid( "W", glamt, gphit, .FALSE., .FALSE. )
[5385]	186	CALL set_grid_znl( gphit )
[5415]	187	!
	188	IF( ln_cfmeta ) THEN ! Add additional grid metadata
[5836]	189	CALL iom_set_domain_attr("grid_T", area = e1e2t(nldi:nlei, nldj:nlej))
	190	CALL iom_set_domain_attr("grid_U", area = e1e2u(nldi:nlei, nldj:nlej))
	191	CALL iom_set_domain_attr("grid_V", area = e1e2v(nldi:nlei, nldj:nlej))
	192	CALL iom_set_domain_attr("grid_W", area = e1e2t(nldi:nlei, nldj:nlej))
[5415]	193	CALL set_grid_bounds( "T", glamf, gphif, glamt, gphit )
	194	CALL set_grid_bounds( "U", glamv, gphiv, glamu, gphiu )
	195	CALL set_grid_bounds( "V", glamu, gphiu, glamv, gphiv )
	196	CALL set_grid_bounds( "W", glamf, gphif, glamt, gphit )
	197	ENDIF
[4152]	198	ENDIF
[9019]	199	!
[5407]	200	IF( TRIM(cdname) == TRIM(cxios_context)//"_crs" ) THEN
[4152]	201	CALL dom_grid_crs ! Save the parent grid information & Switch to coarse grid domain
	202	!
[9984]	203	CALL set_grid( "T", glamt_crs, gphit_crs, .FALSE., .FALSE. )
	204	CALL set_grid( "U", glamu_crs, gphiu_crs, .FALSE., .FALSE. )
	205	CALL set_grid( "V", glamv_crs, gphiv_crs, .FALSE., .FALSE. )
	206	CALL set_grid( "W", glamt_crs, gphit_crs, .FALSE., .FALSE. )
[5385]	207	CALL set_grid_znl( gphit_crs )
[4152]	208	!
	209	CALL dom_grid_glo ! Return to parent grid domain
[5415]	210	!
[9367]	211	IF( ln_cfmeta .AND. .NOT. llrst_context) THEN ! Add additional grid metadata
[5415]	212	CALL iom_set_domain_attr("grid_T", area = e1e2t_crs(nldi:nlei, nldj:nlej))
	213	CALL iom_set_domain_attr("grid_U", area = e1u_crs(nldi:nlei, nldj:nlej) * e2u_crs(nldi:nlei, nldj:nlej))
	214	CALL iom_set_domain_attr("grid_V", area = e1v_crs(nldi:nlei, nldj:nlej) * e2v_crs(nldi:nlei, nldj:nlej))
	215	CALL iom_set_domain_attr("grid_W", area = e1e2t_crs(nldi:nlei, nldj:nlej))
	216	CALL set_grid_bounds( "T", glamf_crs, gphif_crs, glamt_crs, gphit_crs )
	217	CALL set_grid_bounds( "U", glamv_crs, gphiv_crs, glamu_crs, gphiu_crs )
	218	CALL set_grid_bounds( "V", glamu_crs, gphiu_crs, glamv_crs, gphiv_crs )
	219	CALL set_grid_bounds( "W", glamf_crs, gphif_crs, glamt_crs, gphit_crs )
	220	ENDIF
[4152]	221	ENDIF
[9019]	222	!
[1359]	223	! vertical grid definition
[9367]	224	IF(.NOT.llrst_context) THEN
[12377]	225	CALL iom_set_axis_attr( "deptht", paxis = gdept_1d )
	226	CALL iom_set_axis_attr( "depthu", paxis = gdept_1d )
	227	CALL iom_set_axis_attr( "depthv", paxis = gdept_1d )
	228	CALL iom_set_axis_attr( "depthw", paxis = gdepw_1d )
[9367]	229
[12377]	230	! ABL
	231	IF( .NOT. ALLOCATED(ght_abl) ) THEN ! force definition for xml files (xios)
	232	ALLOCATE( ght_abl(jpka), ghw_abl(jpka), e3t_abl(jpka), e3w_abl(jpka) ) ! default allocation needed by iom
	233	ght_abl(:) = -1._wp ; ghw_abl(:) = -1._wp
	234	e3t_abl(:) = -1._wp ; e3w_abl(:) = -1._wp
	235	ENDIF
	236	CALL iom_set_axis_attr( "ght_abl", ght_abl(2:jpka) )
	237	CALL iom_set_axis_attr( "ghw_abl", ghw_abl(2:jpka) )
	238
[9367]	239	! Add vertical grid bounds
[12597]	240	zt_bnds(2,: ) = gdept_1d(:)
	241	zt_bnds(1,2:jpk ) = gdept_1d(1:jpkm1)
	242	zt_bnds(1,1 ) = gdept_1d(1) - e3w_1d(1)
	243	zw_bnds(1,: ) = gdepw_1d(:)
	244	zw_bnds(2,1:jpkm1) = gdepw_1d(2:jpk)
	245	zw_bnds(2,jpk: ) = gdepw_1d(jpk) + e3t_1d(jpk)
[12377]	246	CALL iom_set_axis_attr( "deptht", bounds=zw_bnds )
	247	CALL iom_set_axis_attr( "depthu", bounds=zw_bnds )
	248	CALL iom_set_axis_attr( "depthv", bounds=zw_bnds )
	249	CALL iom_set_axis_attr( "depthw", bounds=zt_bnds )
	250
	251	! ABL
	252	za_bnds(1,:) = ghw_abl(1:jpkam1)
	253	za_bnds(2,:) = ghw_abl(2:jpka )
	254	CALL iom_set_axis_attr( "ght_abl", bounds=za_bnds )
	255	za_bnds(1,:) = ght_abl(2:jpka )
	256	za_bnds(2,:) = ght_abl(2:jpka ) + e3w_abl(2:jpka)
	257	CALL iom_set_axis_attr( "ghw_abl", bounds=za_bnds )
	258
[9580]	259	CALL iom_set_axis_attr( "nfloat", (/ (REAL(ji,wp), ji=1,jpnfl) /) )
[9570]	260	# if defined key_si3
[9367]	261	CALL iom_set_axis_attr( "ncatice", (/ (REAL(ji,wp), ji=1,jpl) /) )
	262	! SIMIP diagnostics (4 main arctic straits)
	263	CALL iom_set_axis_attr( "nstrait", (/ (REAL(ji,wp), ji=1,4) /) )
[9019]	264	# endif
[10222]	265	#if defined key_top
[10817]	266	IF( ALLOCATED(profsed) ) CALL iom_set_axis_attr( "profsed", paxis = profsed )
[10222]	267	#endif
[9367]	268	CALL iom_set_axis_attr( "icbcla", class_num )
[10817]	269	CALL iom_set_axis_attr( "iax_20C", (/ REAL(20,wp) /) ) ! strange syntaxe and idea...
[12276]	270	CALL iom_set_axis_attr( "iax_26C", (/ REAL(26,wp) /) ) ! strange syntaxe and idea...
[10817]	271	CALL iom_set_axis_attr( "iax_28C", (/ REAL(28,wp) /) ) ! strange syntaxe and idea...
[12276]	272	CALL iom_set_axis_attr( "basin" , (/ (REAL(ji,wp), ji=1,5) /) )
[9367]	273	ENDIF
	274	!
[1725]	275	! automatic definitions of some of the xml attributs
[12957]	276	IF(lwp) write(numout, *) 'TEST IOM_INIT: ', TRIM(cdname), TRIM(cdname) == TRIM(crixios_context)
	277	IF(lwp) CALL FLUSH(numout)
[12961]	278	IF(llrstr) THEN
	279	IF(PRESENT(idfp)) THEN
	280	CALL iom_set_rst_context(.TRUE.)
	281	!set which fields will be read from restart file
	282	CALL iom_set_rstr_active(fname, idfp)
[12957]	283	ELSE
[12961]	284	CALL ctl_stop( 'iom_init:', 'restart read with XIOS: missing pointer to NETCDF file' )
[12957]	285	ENDIF
[12961]	286	ELSE IF(llrstw) THEN
[12950]	287	CALL iom_set_rstw_file(fname)
[9367]	288	ELSE
	289	CALL set_xmlatt
	290	ENDIF
[9019]	291	!
[12377]	292	! set time step length
[12489]	293	dtime%second = rn_Dt
[9019]	294	CALL xios_set_timestep( dtime )
	295	!
[12377]	296	! conditional closure of context definition
	297	IF ( ll_closedef ) CALL iom_init_closedef
	298	!
[7646]	299	DEALLOCATE( zt_bnds, zw_bnds )
[9019]	300	!
[9903]	301	IF ( ll_tmppatch ) THEN
[9802]	302	nldi = nldi_save ; nlei = nlei_save
	303	nldj = nldj_save ; nlej = nlej_save
	304	ENDIF
[1359]	305	#endif
[9019]	306	!
[1359]	307	END SUBROUTINE iom_init
	308
[12950]	309	SUBROUTINE iom_init_closedef(cdname)
[12377]	310	!!----------------------------------------------------------------------
	311	!! * SUBROUTINE iom_init_closedef *
	312	!!----------------------------------------------------------------------
	313	!!
	314	!! ** Purpose : Closure of context definition
	315	!!
	316	!!----------------------------------------------------------------------
[12950]	317	CHARACTER(len=*), OPTIONAL, INTENT(IN) :: cdname
	318	#if defined key_iomput
[12957]	319	LOGICAL :: llrstw
	320
	321	IF(lwp) write(numout, *) 'XIOS CLOSE definitions for: ', TRIM(cdname)
	322	llrstw = .FALSE.
[12961]	323	IF(PRESENT(cdname)) THEN
	324	llrstw = (TRIM(cdname) == TRIM(cwxios_context))
	325	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwixios_context))
	326	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwtxios_context))
	327	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwsxios_context))
[12957]	328	ENDIF
	329
	330	IF( llrstw ) THEN
[12950]	331	!set names of the fields in restart file IF using XIOS to write data
	332	CALL iom_set_rst_context(.FALSE.)
[12961]	333	CALL xios_close_context_definition()
	334	ELSE
	335	CALL xios_close_context_definition()
	336	CALL xios_update_calendar( 0 )
[12950]	337	ENDIF
[12377]	338	#else
	339	IF( .FALSE. ) WRITE(numout,*) 'iom_init_closedef: should not see this' ! useless statement to avoid compilation warnings
	340	#endif
	341
	342	END SUBROUTINE iom_init_closedef
	343
[12957]	344	SUBROUTINE iom_set_rstr_active(cdfname, idnum)
[9367]	345	!!---------------------------------------------------------------------
	346	!! * SUBROUTINE iom_set_rstr_active *
	347	!!
	348	!! ** Purpose : define file name in XIOS context for reading restart file,
	349	!! enable variables present in restart file for reading with XIOS
	350	!!---------------------------------------------------------------------
	351
	352	!sets enabled = .TRUE. for each field in restart file
[12957]	353	CHARACTER(len=*), INTENT(IN) :: cdfname
	354	INTEGER , INTENT(IN) :: idnum
[9535]	355	#if defined key_iomput
[12950]	356	INTEGER :: ndims, nvars, natts, unlimitedDimId, dimlen, xtype,mdims
	357	TYPE(xios_field) :: field_hdl
	358	TYPE(xios_file) :: file_hdl
	359	TYPE(xios_filegroup) :: filegroup_hdl
	360	INTEGER :: dimids(4), jv,i, idim
	361	CHARACTER(LEN=256) :: clinfo ! info character
	362	INTEGER, ALLOCATABLE :: indimlens(:)
	363	CHARACTER(LEN=nf90_max_name), ALLOCATABLE :: indimnames(:)
	364	CHARACTER(LEN=nf90_max_name) :: dimname, varname
	365	LOGICAL :: lmeta
[9367]	366
[12950]	367	!failed to build with AGRIF
	368	! meta(1:NMETA) = ["nav_lat", &
	369	! "nav_lon", "nav_lev", "time_instant", &
	370	! "time_instant_bounds", "time_counter", &
	371	! "time_counter_bounds", "x", "y", "numcat"]
	372
	373	meta(1) = "nav_lat"
	374	meta(2) = "nav_lon"
	375	meta(3) = "nav_lev"
	376	meta(4) = "time_instant"
	377	meta(5) = "time_instant_bounds"
	378	meta(6) = "time_counter"
	379	meta(7) = "time_counter_bounds"
	380	meta(8) = "x"
	381	meta(9) = "y"
	382	meta(10) = "numcat"
	383
[12957]	384	clinfo = ' iom_set_rstr_active, file: '//TRIM(cdfname)
[12950]	385
[12957]	386	IF(lwp) write(numout, *) TRIM(clinfo)
	387	IF(lwp) CALL FLUSH(numout)
[9367]	388	!set name of the restart file and enable available fields
	389	CALL xios_get_handle("file_definition", filegroup_hdl )
	390	CALL xios_add_child(filegroup_hdl, file_hdl, 'rrestart')
[12957]	391	CALL xios_set_file_attr( "rrestart", name=trim(cdfname), type="one_file", &
[9367]	392	par_access="collective", enabled=.TRUE., mode="read", &
	393	output_freq=xios_timestep)
	394
[12961]	395	CALL iom_nf90_check( nf90_inquire(idnum, ndims, nvars, natts ), clinfo )
[12950]	396	ALLOCATE(indimlens(ndims), indimnames(ndims))
[12961]	397	CALL iom_nf90_check( nf90_inquire(idnum, unlimitedDimId = unlimitedDimId ), clinfo )
[9367]	398
[12950]	399	DO idim = 1, ndims
[12961]	400	CALL iom_nf90_check( nf90_inquire_dimension(idnum, idim, dimname, dimlen ), clinfo )
[12950]	401	indimlens(idim) = dimlen
	402	indimnames(idim) = dimname
	403	ENDDO
[9367]	404
[12950]	405	DO jv =1, nvars
	406	lmeta = .FALSE.
[12961]	407	CALL iom_nf90_check( nf90_inquire_variable(idnum, jv, varname, xtype, ndims, dimids, natts ), clinfo )
[12950]	408	DO i = 1, NMETA
	409	IF(TRIM(varname) == TRIM(meta(i))) THEN
	410	lmeta = .TRUE.
	411	ENDIF
	412	ENDDO
	413	IF(.NOT.lmeta) THEN
	414	CALL xios_add_child(file_hdl, field_hdl, TRIM(varname))
[12957]	415	if(lwp) write(numout, *) 'ADD field: ', TRIM(varname)
	416	IF(lwp) CALL FLUSH(numout)
[12950]	417	mdims = ndims
[9367]	418
[12950]	419	IF(ANY(dimids(1:ndims) == unlimitedDimId)) THEN
	420	mdims = mdims - 1
	421	ENDIF
[9367]	422
[12950]	423	IF(mdims == 3) THEN
[12957]	424	if(lwp) write(numout, *) '3D', indimlens(ndims)
	425	IF(lwp) CALL FLUSH(numout)
	426
[12950]	427	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(varname), &
	428	domain_ref="grid_N", axis_ref=TRIM(iom_axis(indimlens(ndims))), &
	429	prec = 8, operation = "instant")
	430	ELSEIF(mdims == 2) THEN
[12957]	431	if(lwp) write(numout, *) '2D'
	432	IF(lwp) CALL FLUSH(numout)
	433
[12950]	434	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(varname), &
	435	domain_ref="grid_N", prec = 8, operation = "instant")
	436	ELSEIF(mdims == 1) THEN
[12957]	437	if(lwp) write(numout, *) '1D', indimlens(ndims)
	438	IF(lwp) CALL FLUSH(numout)
	439
[12950]	440	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(varname), &
	441	axis_ref=TRIM(iom_axis(indimlens(ndims))), prec = 8, operation = "instant")
	442	ELSEIF(mdims == 0) THEN
[12957]	443	if(lwp) write(numout, *) '0D'
	444	IF(lwp) CALL FLUSH(numout)
	445
[12950]	446	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(varname), &
	447	scalar_ref = "grid_scalar", prec = 8, operation = "instant")
	448	ELSE
[12957]	449	if(lwp) write(numout, *) 'WAHT?'
	450	IF(lwp) CALL FLUSH(numout)
	451
	452	WRITE(ctmp1,*) 'iom_set_rstr_active: variable ', TRIM(varname) ,' incorrect number of dimensions'
	453	CALL ctl_stop( 'iom_set_rstr_active:', ctmp1 )
[12950]	454	ENDIF
	455	ENDIF
	456	ENDDO
	457	DEALLOCATE(indimlens, indimnames)
	458	#endif
	459	END SUBROUTINE iom_set_rstr_active
[9367]	460
[12950]	461	SUBROUTINE iom_set_rstw_file(cdrst_file)
[9367]	462	!!---------------------------------------------------------------------
[12950]	463	!! * SUBROUTINE iom_set_rstw_file *
[9367]	464	!!
	465	!! ** Purpose : define file name in XIOS context for writing restart
	466	!!---------------------------------------------------------------------
	467	CHARACTER(len=*) :: cdrst_file
	468	#if defined key_iomput
	469	TYPE(xios_file) :: file_hdl
	470	TYPE(xios_filegroup) :: filegroup_hdl
	471	INTEGER :: i
	472	CHARACTER(lc) :: clpath
	473
	474	!set name of the restart file and enable available fields
	475	IF(lwp) WRITE(numout,*) 'Setting restart filename (for XIOS write) to: ',cdrst_file
[12957]	476	IF(lwp) CALL FLUSH(numout)
[9367]	477	CALL xios_get_handle("file_definition", filegroup_hdl )
	478	CALL xios_add_child(filegroup_hdl, file_hdl, 'wrestart')
	479	IF(nxioso.eq.1) THEN
	480	CALL xios_set_file_attr( "wrestart", type="one_file", enabled=.TRUE.,&
	481	mode="write", output_freq=xios_timestep)
	482	if(lwp) write(numout,*) 'OPEN ', trim(cdrst_file), ' in one_file mode'
	483	ELSE
	484	CALL xios_set_file_attr( "wrestart", type="multiple_file", enabled=.TRUE.,&
	485	mode="write", output_freq=xios_timestep)
	486	if(lwp) write(numout,*) 'OPEN ', trim(cdrst_file), ' in multiple_file mode'
	487	ENDIF
	488	CALL xios_set_file_attr( "wrestart", name=trim(cdrst_file))
[12950]	489	#endif
	490	END SUBROUTINE iom_set_rstw_file
	491
	492
	493	SUBROUTINE iom_set_rstw_active(sdfield, rd0, rd1, rd2, rd3)
	494	!!---------------------------------------------------------------------
	495	!! * SUBROUTINE iom_set_rstw_active *
	496	!!
	497	!! ** Purpose : define file name in XIOS context for writing restart
	498	!! enable variables present in restart file for writing
	499	!!---------------------------------------------------------------------
	500	!sets enabled = .TRUE. for each field in restart file
	501	CHARACTER(len = *), INTENT(IN) :: sdfield
	502	REAL(wp), OPTIONAL, INTENT(IN) :: rd0
	503	REAL(wp), OPTIONAL, INTENT(IN), DIMENSION(:) :: rd1
	504	REAL(wp), OPTIONAL, INTENT(IN), DIMENSION(:, :) :: rd2
	505	REAL(wp), OPTIONAL, INTENT(IN), DIMENSION(:, :, :) :: rd3
	506	#if defined key_iomput
	507	TYPE(xios_field) :: field_hdl
	508	TYPE(xios_file) :: file_hdl
	509	INTEGER :: i
	510	CHARACTER(lc) :: clpath
	511	CHARACTER(len=1024) :: fname
	512	CHARACTER(len=lc) :: axis_ref
	513
	514	CALL xios_get_handle("wrestart", file_hdl)
[9367]	515	!define fields for restart context
[12950]	516	CALL xios_add_child(file_hdl, field_hdl, TRIM(sdfield))
	517
	518	IF(PRESENT(rd3)) THEN
[12961]	519	IF(lwp) write(numout, *) TRIM(sdfield), ' 3D ', size(rd3,3)
	520	IF(lwp) CALL FLUSH(numout)
[12950]	521	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(sdfield), &
	522	domain_ref="grid_N", axis_ref=TRIM(iom_axis(size(rd3, 3))), &
	523	prec = 8, operation = "instant")
	524	ENDIF
	525
	526	IF(PRESENT(rd2)) THEN
[12961]	527	IF(lwp) write(numout, *) TRIM(sdfield), ' 2D'
	528	IF(lwp) CALL FLUSH(numout)
[12950]	529	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(sdfield), &
	530	domain_ref="grid_N", prec = 8, operation = "instant")
	531	ENDIF
	532
	533	IF(PRESENT(rd1)) THEN
[12961]	534	IF(lwp) write(numout, *) TRIM(sdfield), ' 1D ', size(rd1,1)
	535	IF(lwp) CALL FLUSH(numout)
[12950]	536	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(sdfield), &
	537	axis_ref=TRIM(iom_axis(size(rd1, 1))), prec = 8, operation = "instant")
	538	ENDIF
	539
	540	IF(PRESENT(rd0)) THEN
[12961]	541	IF(lwp) write(numout, *) TRIM(sdfield), ' 0D'
	542	IF(lwp) CALL FLUSH(numout)
[12950]	543	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(sdfield), &
	544	scalar_ref = "grid_scalar", prec = 8, operation = "instant")
	545	ENDIF
[9367]	546	#endif
	547	END SUBROUTINE iom_set_rstw_active
	548
[12950]	549	FUNCTION iom_axis(idlev) result(axis_ref)
	550	!!---------------------------------------------------------------------
	551	!! * FUNCTION iom_axis *
	552	!!
	553	!! ** Purpose : Used for grid definition when XIOS is used to read/write
	554	!! restart. Returns axis corresponding to the number of levels
	555	!! given as an input variable. Axes are defined in routine
	556	!! iom_set_rst_context
	557	!!---------------------------------------------------------------------
	558	INTEGER, INTENT(IN) :: idlev
	559	CHARACTER(len=lc) :: axis_ref
	560	CHARACTER(len=12) :: str
	561	IF(idlev == jpk) THEN
	562	axis_ref="nav_lev"
	563	#if defined key_si3
	564	ELSEIF(idlev == jpl) THEN
	565	axis_ref="numcat"
	566	#endif
	567	ELSE
	568	write(str, *) idlev
	569	CALL ctl_stop( 'iom_axis', 'Definition for axis with '//TRIM(ADJUSTL(str))//' levels missing')
	570	ENDIF
	571	END FUNCTION iom_axis
	572
[9984]	573	SUBROUTINE iom_set_rst_context(ld_rstr)
[9367]	574	!!---------------------------------------------------------------------
[9535]	575	!! * SUBROUTINE iom_set_rst_context *
[9367]	576	!!
	577	!! ** Purpose : Define domain, axis and grid for restart (read/write)
	578	!! context
	579	!!
	580	!!---------------------------------------------------------------------
[9984]	581	LOGICAL, INTENT(IN) :: ld_rstr
[12950]	582	INTEGER :: ji
[9367]	583	#if defined key_iomput
	584	TYPE(xios_domaingroup) :: domaingroup_hdl
	585	TYPE(xios_domain) :: domain_hdl
	586	TYPE(xios_axisgroup) :: axisgroup_hdl
	587	TYPE(xios_axis) :: axis_hdl
	588	TYPE(xios_scalar) :: scalar_hdl
	589	TYPE(xios_scalargroup) :: scalargroup_hdl
	590
	591	CALL xios_get_handle("domain_definition",domaingroup_hdl)
	592	CALL xios_add_child(domaingroup_hdl, domain_hdl, "grid_N")
[9984]	593	CALL set_grid("N", glamt, gphit, .TRUE., ld_rstr)
[9367]	594
	595	CALL xios_get_handle("axis_definition",axisgroup_hdl)
	596	CALL xios_add_child(axisgroup_hdl, axis_hdl, "nav_lev")
	597	!AGRIF fails to compile when unit= is in call to xios_set_axis_attr
	598	! CALL xios_set_axis_attr( "nav_lev", long_name="Vertical levels", unit="m", positive="down")
	599	CALL xios_set_axis_attr( "nav_lev", long_name="Vertical levels in meters", positive="down")
	600	CALL iom_set_axis_attr( "nav_lev", paxis = gdept_1d )
[12950]	601	#if defined key_si3
	602	CALL xios_add_child(axisgroup_hdl, axis_hdl, "numcat")
	603	CALL iom_set_axis_attr( "numcat", (/ (REAL(ji,wp), ji=1,jpl) /) )
	604	#endif
[9367]	605
	606	CALL xios_get_handle("scalar_definition", scalargroup_hdl)
	607	CALL xios_add_child(scalargroup_hdl, scalar_hdl, "grid_scalar")
	608	#endif
	609	END SUBROUTINE iom_set_rst_context
	610
[4152]	611	SUBROUTINE iom_swap( cdname )
[1793]	612	!!---------------------------------------------------------------------
	613	!! * SUBROUTINE iom_swap *
	614	!!
	615	!! ** Purpose : swap context between different agrif grid for xmlio_server
	616	!!---------------------------------------------------------------------
[4152]	617	CHARACTER(len=*), INTENT(in) :: cdname
[1793]	618	#if defined key_iomput
[3695]	619	TYPE(xios_context) :: nemo_hdl
[4152]	620	IF( TRIM(Agrif_CFixed()) == '0' ) THEN
	621	CALL xios_get_handle(TRIM(cdname),nemo_hdl)
	622	ELSE
	623	CALL xios_get_handle(TRIM(Agrif_CFixed())//"_"//TRIM(cdname),nemo_hdl)
	624	ENDIF
	625	!
	626	CALL xios_set_current_context(nemo_hdl)
[1793]	627	#endif
[4152]	628	!
[1793]	629	END SUBROUTINE iom_swap
	630
	631
[12649]	632	SUBROUTINE iom_open( cdname, kiomid, ldwrt, kdom, ldstop, ldiof, kdlev, cdcomp )
[544]	633	!!---------------------------------------------------------------------
	634	!! * SUBROUTINE iom_open *
	635	!!
	636	!! ** Purpose : open an input file (return 0 if not found)
	637	!!---------------------------------------------------------------------
	638	CHARACTER(len=*), INTENT(in ) :: cdname ! File name
	639	INTEGER , INTENT( out) :: kiomid ! iom identifier of the opened file
	640	LOGICAL , INTENT(in ), OPTIONAL :: ldwrt ! open in write modeb (default = .FALSE.)
	641	INTEGER , INTENT(in ), OPTIONAL :: kdom ! Type of domain to be written (default = jpdom_local_noovlap)
[679]	642	LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if open to read a non-existing file (default = .TRUE.)
[1319]	643	LOGICAL , INTENT(in ), OPTIONAL :: ldiof ! Interp On the Fly, needed for AGRIF (default = .FALSE.)
[9019]	644	INTEGER , INTENT(in ), OPTIONAL :: kdlev ! number of vertical levels
[12649]	645	CHARACTER(len=3), INTENT(in ), OPTIONAL :: cdcomp ! name of component calling iom_nf90_open
[9019]	646	!
[4148]	647	CHARACTER(LEN=256) :: clname ! the name of the file based on cdname [[+clcpu]+clcpu]
	648	CHARACTER(LEN=256) :: cltmpn ! tempory name to store clname (in writting mode)
[6140]	649	CHARACTER(LEN=10) :: clsuffix ! ".nc"
[550]	650	CHARACTER(LEN=15) :: clcpu ! the cpu number (max jpmax_digits digits)
[4148]	651	CHARACTER(LEN=256) :: clinfo ! info character
[544]	652	LOGICAL :: llok ! check the existence
[679]	653	LOGICAL :: llwrt ! local definition of ldwrt
[1200]	654	LOGICAL :: llnoov ! local definition to read overlap
[679]	655	LOGICAL :: llstop ! local definition of ldstop
[1319]	656	LOGICAL :: lliof ! local definition of ldiof
[544]	657	INTEGER :: icnt ! counter for digits in clcpu (max = jpmax_digits)
	658	INTEGER :: iln, ils ! lengths of character
	659	INTEGER :: idom ! type of domain
	660	INTEGER :: istop !
	661	INTEGER, DIMENSION(2,5) :: idompar ! domain parameters:
	662	! local number of points for x,y dimensions
	663	! position of first local point for x,y dimensions
	664	! position of last local point for x,y dimensions
	665	! start halo size for x,y dimensions
	666	! end halo size for x,y dimensions
	667	!---------------------------------------------------------------------
	668	! Initializations and control
	669	! =============
[1341]	670	kiomid = -1
[544]	671	clinfo = ' iom_open ~~~ '
	672	istop = nstop
	673	! if iom_open is called for the first time: initialize iom_file(:)%nfid to 0
	674	! (could be done when defining iom_file in f95 but not in f90)
[1441]	675	IF( Agrif_Root() ) THEN
	676	IF( iom_open_init == 0 ) THEN
	677	iom_file(:)%nfid = 0
	678	iom_open_init = 1
	679	ENDIF
[1409]	680	ENDIF
[544]	681	! do we read or write the file?
	682	IF( PRESENT(ldwrt) ) THEN ; llwrt = ldwrt
	683	ELSE ; llwrt = .FALSE.
	684	ENDIF
[679]	685	! do we call ctl_stop if we try to open a non-existing file in read mode?
	686	IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
	687	ELSE ; llstop = .TRUE.
	688	ENDIF
[1319]	689	! are we using interpolation on the fly?
	690	IF( PRESENT(ldiof) ) THEN ; lliof = ldiof
	691	ELSE ; lliof = .FALSE.
	692	ENDIF
[1200]	693	! do we read the overlap
	694	! ugly patch SM+JMM+RB to overwrite global definition in some cases
[10016]	695	llnoov = (jpni * jpnj ) == jpnij .AND. .NOT. lk_agrif
[544]	696	! create the file name by added, if needed, TRIM(Agrif_CFixed()) and TRIM(clsuffix)
	697	! =============
	698	clname = trim(cdname)
[1319]	699	IF ( .NOT. Agrif_Root() .AND. .NOT. lliof ) THEN
[12377]	700	iln = INDEX(clname,'/')
[1200]	701	cltmpn = clname(1:iln)
	702	clname = clname(iln+1:LEN_TRIM(clname))
	703	clname=TRIM(cltmpn)//TRIM(Agrif_CFixed())//'_'//TRIM(clname)
	704	ENDIF
[544]	705	! which suffix should we use?
[10425]	706	clsuffix = '.nc'
[544]	707	! Add the suffix if needed
	708	iln = LEN_TRIM(clname)
	709	ils = LEN_TRIM(clsuffix)
[742]	710	IF( iln <= ils .OR. INDEX( TRIM(clname), TRIM(clsuffix), back = .TRUE. ) /= iln - ils + 1 ) &
	711	& clname = TRIM(clname)//TRIM(clsuffix)
[544]	712	cltmpn = clname ! store this name
	713	! try to find if the file to be opened already exist
	714	! =============
	715	INQUIRE( FILE = clname, EXIST = llok )
	716	IF( .NOT.llok ) THEN
	717	! we try to add the cpu number to the name
[6140]	718	WRITE(clcpu,*) narea-1
	719
[544]	720	clcpu = TRIM(ADJUSTL(clcpu))
[679]	721	iln = INDEX(clname,TRIM(clsuffix), back = .TRUE.)
[544]	722	clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
	723	icnt = 0
	724	INQUIRE( FILE = clname, EXIST = llok )
	725	! we try different formats for the cpu number by adding 0
	726	DO WHILE( .NOT.llok .AND. icnt < jpmax_digits )
	727	clcpu = "0"//trim(clcpu)
	728	clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
	729	INQUIRE( FILE = clname, EXIST = llok )
	730	icnt = icnt + 1
	731	END DO
[9367]	732	ELSE
	733	lxios_sini = .TRUE.
[544]	734	ENDIF
[679]	735	IF( llwrt ) THEN
	736	! check the domain definition
	737	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	738	! idom = jpdom_local_noovlap ! default definition
[1200]	739	IF( llnoov ) THEN ; idom = jpdom_local_noovlap ! default definition
	740	ELSE ; idom = jpdom_local_full ! default definition
[679]	741	ENDIF
	742	IF( PRESENT(kdom) ) idom = kdom
	743	! create the domain informations
	744	! =============
	745	SELECT CASE (idom)
	746	CASE (jpdom_local_full)
	747	idompar(:,1) = (/ jpi , jpj /)
	748	idompar(:,2) = (/ nimpp , njmpp /)
	749	idompar(:,3) = (/ nimpp + jpi - 1 , njmpp + jpj - 1 /)
	750	idompar(:,4) = (/ nldi - 1 , nldj - 1 /)
	751	idompar(:,5) = (/ jpi - nlei , jpj - nlej /)
	752	CASE (jpdom_local_noextra)
	753	idompar(:,1) = (/ nlci , nlcj /)
	754	idompar(:,2) = (/ nimpp , njmpp /)
	755	idompar(:,3) = (/ nimpp + nlci - 1, njmpp + nlcj - 1 /)
	756	idompar(:,4) = (/ nldi - 1 , nldj - 1 /)
	757	idompar(:,5) = (/ nlci - nlei , nlcj - nlej /)
	758	CASE (jpdom_local_noovlap)
	759	idompar(:,1) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
	760	idompar(:,2) = (/ nimpp + nldi - 1, njmpp + nldj - 1 /)
	761	idompar(:,3) = (/ nimpp + nlei - 1, njmpp + nlej - 1 /)
	762	idompar(:,4) = (/ 0 , 0 /)
	763	idompar(:,5) = (/ 0 , 0 /)
	764	CASE DEFAULT
	765	CALL ctl_stop( TRIM(clinfo), 'wrong value of kdom, only jpdom_local* cases are accepted' )
	766	END SELECT
	767	ENDIF
[6140]	768	! Open the NetCDF file
[544]	769	! =============
	770	! do we have some free file identifier?
	771	IF( MINVAL(iom_file(:)%nfid) /= 0 ) &
[679]	772	& CALL ctl_stop( TRIM(clinfo), 'No more free file identifier', 'increase jpmax_files in iom_def' )
	773	! if no file was found...
	774	IF( .NOT. llok ) THEN
	775	IF( .NOT. llwrt ) THEN ! we are in read mode
	776	IF( llstop ) THEN ; CALL ctl_stop( TRIM(clinfo), 'File '//TRIM(cltmpn)//'* not found' )
	777	ELSE ; istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
	778	ENDIF
	779	ELSE ! we are in write mode so we
	780	clname = cltmpn ! get back the file name without the cpu number
	781	ENDIF
[2586]	782	ELSE
	783	IF( llwrt .AND. .NOT. ln_clobber ) THEN ! we stop as we want to write in a new file
	784	CALL ctl_stop( TRIM(clinfo), 'We want to write in a new file but '//TRIM(clname)//' already exists...' )
	785	istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
[4650]	786	ELSEIF( llwrt ) THEN ! the file exists and we are in write mode with permission to
	787	clname = cltmpn ! overwrite so get back the file name without the cpu number
[2586]	788	ENDIF
[679]	789	ENDIF
[544]	790	IF( istop == nstop ) THEN ! no error within this routine
[12649]	791	CALL iom_nf90_open( clname, kiomid, llwrt, llok, idompar, kdlev = kdlev, cdcomp = cdcomp )
[544]	792	ENDIF
	793	!
	794	END SUBROUTINE iom_open
	795
	796
	797	SUBROUTINE iom_close( kiomid )
	798	!!--------------------------------------------------------------------
	799	!! * SUBROUTINE iom_close *
	800	!!
	801	!! ** Purpose : close an input file, or all files opened by iom
	802	!!--------------------------------------------------------------------
[1131]	803	INTEGER, INTENT(inout), OPTIONAL :: kiomid ! iom identifier of the file to be closed
	804	! ! return 0 when file is properly closed
	805	! ! No argument: all files opened by iom are closed
[544]	806
	807	INTEGER :: jf ! dummy loop indices
	808	INTEGER :: i_s, i_e ! temporary integer
	809	CHARACTER(LEN=100) :: clinfo ! info character
	810	!---------------------------------------------------------------------
	811	!
[12283]	812	IF( iom_open_init == 0 ) RETURN ! avoid to use iom_file(jf)%nfid that us not yet initialized
	813	!
[544]	814	clinfo = ' iom_close ~~~ '
	815	IF( PRESENT(kiomid) ) THEN
	816	i_s = kiomid
	817	i_e = kiomid
	818	ELSE
	819	i_s = 1
	820	i_e = jpmax_files
	821	ENDIF
	822
	823	IF( i_s > 0 ) THEN
	824	DO jf = i_s, i_e
	825	IF( iom_file(jf)%nfid > 0 ) THEN
[10425]	826	CALL iom_nf90_close( jf )
[1131]	827	iom_file(jf)%nfid = 0 ! free the id
	828	IF( PRESENT(kiomid) ) kiomid = 0 ! return 0 as id to specify that the file was closed
[679]	829	IF(lwp) WRITE(numout,*) TRIM(clinfo)//' close file: '//TRIM(iom_file(jf)%name)//' ok'
[544]	830	ELSEIF( PRESENT(kiomid) ) THEN
	831	WRITE(ctmp1,*) '--->', kiomid
	832	CALL ctl_stop( TRIM(clinfo)//' Invalid file identifier', ctmp1 )
	833	ENDIF
	834	END DO
	835	ENDIF
	836	!
	837	END SUBROUTINE iom_close
	838
	839
[11536]	840	FUNCTION iom_varid ( kiomid, cdvar, kdimsz, kndims, lduld, ldstop )
[544]	841	!!-----------------------------------------------------------------------
	842	!! * FUNCTION iom_varid *
	843	!!
	844	!! ** Purpose : get the id of a variable in a file (return 0 if not found)
	845	!!-----------------------------------------------------------------------
	846	INTEGER , INTENT(in ) :: kiomid ! file Identifier
	847	CHARACTER(len=*) , INTENT(in ) :: cdvar ! name of the variable
[9540]	848	INTEGER, DIMENSION(:), INTENT( out), OPTIONAL :: kdimsz ! size of each dimension
[11536]	849	INTEGER , INTENT( out), OPTIONAL :: kndims ! number of dimensions
	850	LOGICAL , INTENT( out), OPTIONAL :: lduld ! true if the last dimension is unlimited (time)
[745]	851	LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if looking for non-existing variable (default = .TRUE.)
[544]	852	!
	853	INTEGER :: iom_varid, iiv, i_nvd
	854	LOGICAL :: ll_fnd
	855	CHARACTER(LEN=100) :: clinfo ! info character
[745]	856	LOGICAL :: llstop ! local definition of ldstop
[544]	857	!!-----------------------------------------------------------------------
	858	iom_varid = 0 ! default definition
[745]	859	! do we call ctl_stop if we look for non-existing variable?
	860	IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
	861	ELSE ; llstop = .TRUE.
	862	ENDIF
[544]	863	!
	864	IF( kiomid > 0 ) THEN
[679]	865	clinfo = 'iom_varid, file: '//trim(iom_file(kiomid)%name)//', var: '//trim(cdvar)
[544]	866	IF( iom_file(kiomid)%nfid == 0 ) THEN
	867	CALL ctl_stop( trim(clinfo), 'the file is not open' )
	868	ELSE
	869	ll_fnd = .FALSE.
	870	iiv = 0
	871	!
	872	DO WHILE ( .NOT.ll_fnd .AND. iiv < iom_file(kiomid)%nvars )
	873	iiv = iiv + 1
	874	ll_fnd = ( TRIM(cdvar) == TRIM(iom_file(kiomid)%cn_var(iiv)) )
	875	END DO
	876	!
	877	IF( .NOT.ll_fnd ) THEN
	878	iiv = iiv + 1
	879	IF( iiv <= jpmax_vars ) THEN
[11536]	880	iom_varid = iom_nf90_varid( kiomid, cdvar, iiv, kdimsz, kndims, lduld )
[544]	881	ELSE
	882	CALL ctl_stop( trim(clinfo), 'Too many variables in the file '//iom_file(kiomid)%name, &
[10425]	883	& 'increase the parameter jpmax_vars')
[544]	884	ENDIF
[745]	885	IF( llstop .AND. iom_varid == -1 ) CALL ctl_stop( TRIM(clinfo)//' not found' )
[544]	886	ELSE
	887	iom_varid = iiv
	888	IF( PRESENT(kdimsz) ) THEN
	889	i_nvd = iom_file(kiomid)%ndims(iiv)
[9540]	890	IF( i_nvd <= size(kdimsz) ) THEN
	891	kdimsz(1:i_nvd) = iom_file(kiomid)%dimsz(1:i_nvd,iiv)
[544]	892	ELSE
	893	WRITE(ctmp1,*) i_nvd, size(kdimsz)
	894	CALL ctl_stop( trim(clinfo), 'error in kdimsz size'//trim(ctmp1) )
	895	ENDIF
	896	ENDIF
[4205]	897	IF( PRESENT(kndims) ) kndims = iom_file(kiomid)%ndims(iiv)
[11536]	898	IF( PRESENT( lduld) ) lduld = iom_file(kiomid)%luld( iiv)
[544]	899	ENDIF
	900	ENDIF
	901	ENDIF
	902	!
	903	END FUNCTION iom_varid
	904
	905
	906	!!----------------------------------------------------------------------
	907	!! INTERFACE iom_get
	908	!!----------------------------------------------------------------------
[9367]	909	SUBROUTINE iom_g0d( kiomid, cdvar, pvar, ktime, ldxios )
[544]	910	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	911	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	912	REAL(wp) , INTENT( out) :: pvar ! read field
[4245]	913	INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
[9367]	914	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! use xios to read restart
[544]	915	!
[4245]	916	INTEGER :: idvar ! variable id
	917	INTEGER :: idmspc ! number of spatial dimensions
	918	INTEGER , DIMENSION(1) :: itime ! record number
	919	CHARACTER(LEN=100) :: clinfo ! info character
	920	CHARACTER(LEN=100) :: clname ! file name
	921	CHARACTER(LEN=1) :: cldmspc !
[9367]	922	LOGICAL :: llxios
[544]	923	!
[9367]	924	llxios = .FALSE.
	925	IF( PRESENT(ldxios) ) llxios = ldxios
	926
	927	IF(.NOT.llxios) THEN ! read data using default library
	928	itime = 1
	929	IF( PRESENT(ktime) ) itime = ktime
	930	!
	931	clname = iom_file(kiomid)%name
	932	clinfo = ' iom_g0d, file: '//trim(clname)//', var: '//trim(cdvar)
	933	!
	934	IF( kiomid > 0 ) THEN
	935	idvar = iom_varid( kiomid, cdvar )
	936	IF( iom_file(kiomid)%nfid > 0 .AND. idvar > 0 ) THEN
	937	idmspc = iom_file ( kiomid )%ndims( idvar )
	938	IF( iom_file(kiomid)%luld(idvar) ) idmspc = idmspc - 1
	939	WRITE(cldmspc , fmt='(i1)') idmspc
	940	IF( idmspc > 0 ) CALL ctl_stop( TRIM(clinfo), 'When reading to a 0D array, we do not accept data', &
	941	& 'with 1 or more spatial dimensions: '//cldmspc//' were found.' , &
	942	& 'Use ncwa -a to suppress the unnecessary dimensions' )
[10425]	943	CALL iom_nf90_get( kiomid, idvar, pvar, itime )
[9367]	944	ENDIF
[679]	945	ENDIF
[9367]	946	ELSE
[9535]	947	#if defined key_iomput
[9367]	948	IF(lwp) WRITE(numout,*) 'XIOS RST READ (0D): ', trim(cdvar)
	949	CALL xios_recv_field( trim(cdvar), pvar)
[9535]	950	#else
[10425]	951	WRITE(ctmp1,*) 'Can not use XIOS in iom_g0d, file: '//trim(clname)//', var:'//trim(cdvar)
	952	CALL ctl_stop( 'iom_g0d', ctmp1 )
[9535]	953	#endif
[679]	954	ENDIF
[550]	955	END SUBROUTINE iom_g0d
[544]	956
[9367]	957	SUBROUTINE iom_g1d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, ldxios )
[544]	958	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	959	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	960	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	961	REAL(wp) , INTENT( out), DIMENSION(:) :: pvar ! read field
	962	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	963	INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kstart ! start axis position of the reading
	964	INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kcount ! number of points in each axis
[9367]	965	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	966	!
[679]	967	IF( kiomid > 0 ) THEN
	968	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r1d=pvar, &
[9367]	969	& ktime=ktime, kstart=kstart, kcount=kcount, &
	970	& ldxios=ldxios )
[679]	971	ENDIF
[550]	972	END SUBROUTINE iom_g1d
[544]	973
[9367]	974	SUBROUTINE iom_g2d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, lrowattr, ldxios)
[544]	975	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	976	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	977	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	978	REAL(wp) , INTENT( out), DIMENSION(:,:) :: pvar ! read field
	979	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	980	INTEGER , INTENT(in ), DIMENSION(2) , OPTIONAL :: kstart ! start axis position of the reading
	981	INTEGER , INTENT(in ), DIMENSION(2) , OPTIONAL :: kcount ! number of points in each axis
[5118]	982	LOGICAL , INTENT(in ) , OPTIONAL :: lrowattr ! logical flag telling iom_get to
	983	! look for and use a file attribute
	984	! called open_ocean_jstart to set the start
	985	! value for the 2nd dimension (netcdf only)
[9367]	986	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	987	!
[679]	988	IF( kiomid > 0 ) THEN
	989	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r2d=pvar, &
[5118]	990	& ktime=ktime, kstart=kstart, kcount=kcount, &
[9367]	991	& lrowattr=lrowattr, ldxios=ldxios)
[679]	992	ENDIF
[550]	993	END SUBROUTINE iom_g2d
[544]	994
[9367]	995	SUBROUTINE iom_g3d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, lrowattr, ldxios )
[544]	996	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	997	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	998	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	999	REAL(wp) , INTENT( out), DIMENSION(:,:,:) :: pvar ! read field
	1000	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	1001	INTEGER , INTENT(in ), DIMENSION(3) , OPTIONAL :: kstart ! start axis position of the reading
	1002	INTEGER , INTENT(in ), DIMENSION(3) , OPTIONAL :: kcount ! number of points in each axis
[5118]	1003	LOGICAL , INTENT(in ) , OPTIONAL :: lrowattr ! logical flag telling iom_get to
	1004	! look for and use a file attribute
	1005	! called open_ocean_jstart to set the start
	1006	! value for the 2nd dimension (netcdf only)
[9367]	1007	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	1008	!
[679]	1009	IF( kiomid > 0 ) THEN
	1010	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r3d=pvar, &
[5118]	1011	& ktime=ktime, kstart=kstart, kcount=kcount, &
[9367]	1012	& lrowattr=lrowattr, ldxios=ldxios )
[679]	1013	ENDIF
[550]	1014	END SUBROUTINE iom_g3d
[544]	1015	!!----------------------------------------------------------------------
	1016
	1017	SUBROUTINE iom_get_123d( kiomid, kdom , cdvar , &
[679]	1018	& pv_r1d, pv_r2d, pv_r3d, &
[5118]	1019	& ktime , kstart, kcount, &
[9367]	1020	& lrowattr, ldxios )
[544]	1021	!!-----------------------------------------------------------------------
	1022	!! * ROUTINE iom_get_123d *
	1023	!!
	1024	!! ** Purpose : read a 1D/2D/3D variable
	1025	!!
	1026	!! ** Method : read ONE record at each CALL
	1027	!!-----------------------------------------------------------------------
	1028	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1029	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	1030	CHARACTER(len=*) , INTENT(in ) :: cdvar ! Name of the variable
	1031	REAL(wp), DIMENSION(:) , INTENT( out), OPTIONAL :: pv_r1d ! read field (1D case)
	1032	REAL(wp), DIMENSION(:,:) , INTENT( out), OPTIONAL :: pv_r2d ! read field (2D case)
	1033	REAL(wp), DIMENSION(:,:,:) , INTENT( out), OPTIONAL :: pv_r3d ! read field (3D case)
	1034	INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
	1035	INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kstart ! start position of the reading in each axis
	1036	INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kcount ! number of points to be read in each axis
[5118]	1037	LOGICAL , INTENT(in ), OPTIONAL :: lrowattr ! logical flag telling iom_get to
[9367]	1038	! look for and use a file attribute
	1039	! called open_ocean_jstart to set the start
	1040	! value for the 2nd dimension (netcdf only)
	1041	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! use XIOS to read restart
[544]	1042	!
[9367]	1043	LOGICAL :: llxios ! local definition for XIOS read
[1200]	1044	LOGICAL :: llnoov ! local definition to read overlap
[5118]	1045	LOGICAL :: luse_jattr ! local definition to read open_ocean_jstart file attribute
	1046	INTEGER :: jstartrow ! start point for 2nd dimension optionally set by file attribute
[544]	1047	INTEGER :: jl ! loop on number of dimension
	1048	INTEGER :: idom ! type of domain
	1049	INTEGER :: idvar ! id of the variable
	1050	INTEGER :: inbdim ! number of dimensions of the variable
	1051	INTEGER :: idmspc ! number of spatial dimensions
	1052	INTEGER :: itime ! record number
	1053	INTEGER :: istop ! temporary value of nstop
[679]	1054	INTEGER :: ix1, ix2, iy1, iy2 ! subdomain indexes
	1055	INTEGER :: ji, jj ! loop counters
[5118]	1056	INTEGER :: irankpv !
[679]	1057	INTEGER :: ind1, ind2 ! substring index
[544]	1058	INTEGER, DIMENSION(jpmax_dims) :: istart ! starting point to read for each axis
	1059	INTEGER, DIMENSION(jpmax_dims) :: icnt ! number of value to read along each axis
	1060	INTEGER, DIMENSION(jpmax_dims) :: idimsz ! size of the dimensions of the variable
[679]	1061	INTEGER, DIMENSION(jpmax_dims) :: ishape ! size of the dimensions of the variable
[544]	1062	REAL(wp) :: zscf, zofs ! sacle_factor and add_offset
	1063	INTEGER :: itmp ! temporary integer
[4148]	1064	CHARACTER(LEN=256) :: clinfo ! info character
	1065	CHARACTER(LEN=256) :: clname ! file name
[679]	1066	CHARACTER(LEN=1) :: clrankpv, cldmspc !
[6140]	1067	LOGICAL :: ll_depth_spec ! T => if kstart, kcount present then only use values for 3rd spatial dimension.
[9019]	1068	INTEGER :: inlev ! number of levels for 3D data
[9367]	1069	REAL(wp) :: gma, gmi
[544]	1070	!---------------------------------------------------------------------
	1071	!
[9019]	1072	inlev = -1
	1073	IF( PRESENT(pv_r3d) ) inlev = SIZE(pv_r3d, 3)
[9367]	1074	!
	1075	llxios = .FALSE.
	1076	if(PRESENT(ldxios)) llxios = ldxios
	1077	idvar = iom_varid( kiomid, cdvar )
[544]	1078	idom = kdom
[9367]	1079	!
	1080	IF(.NOT.llxios) THEN
	1081	clname = iom_file(kiomid)%name ! esier to read
	1082	clinfo = ' iom_get_123d, file: '//trim(clname)//', var: '//trim(cdvar)
	1083	! local definition of the domain ?
	1084	! do we read the overlap
	1085	! ugly patch SM+JMM+RB to overwrite global definition in some cases
	1086	llnoov = (jpni * jpnj ) == jpnij .AND. .NOT. lk_agrif
	1087	! check kcount and kstart optionals parameters...
	1088	IF( PRESENT(kcount) .AND. (.NOT. PRESENT(kstart)) ) CALL ctl_stop(trim(clinfo), 'kcount present needs kstart present')
	1089	IF( PRESENT(kstart) .AND. (.NOT. PRESENT(kcount)) ) CALL ctl_stop(trim(clinfo), 'kstart present needs kcount present')
	1090	IF( PRESENT(kstart) .AND. idom /= jpdom_unknown .AND. idom /= jpdom_autoglo_xy ) &
	1091	& CALL ctl_stop(trim(clinfo), 'kstart present needs kdom = jpdom_unknown or kdom = jpdom_autoglo_xy')
[544]	1092
[9367]	1093	luse_jattr = .false.
	1094	IF( PRESENT(lrowattr) ) THEN
	1095	IF( lrowattr .AND. idom /= jpdom_data ) CALL ctl_stop(trim(clinfo), 'lrowattr present and true needs kdom = jpdom_data')
	1096	IF( lrowattr .AND. idom == jpdom_data ) luse_jattr = .true.
[6140]	1097	ENDIF
[679]	1098
[9367]	1099	! Search for the variable in the data base (eventually actualize data)
	1100	istop = nstop
[544]	1101	!
[9367]	1102	IF( idvar > 0 ) THEN
	1103	! to write iom_file(kiomid)%dimsz in a shorter way !
	1104	idimsz(:) = iom_file(kiomid)%dimsz(:, idvar)
	1105	inbdim = iom_file(kiomid)%ndims(idvar) ! number of dimensions in the file
	1106	idmspc = inbdim ! number of spatial dimensions in the file
	1107	IF( iom_file(kiomid)%luld(idvar) ) idmspc = inbdim - 1
	1108	IF( idmspc > 3 ) CALL ctl_stop(trim(clinfo), 'the file has more than 3 spatial dimensions this case is not coded...')
	1109	!
	1110	! update idom definition...
	1111	! Identify the domain in case of jpdom_auto(glo/dta) definition
	1112	IF( idom == jpdom_autoglo_xy ) THEN
	1113	ll_depth_spec = .TRUE.
	1114	idom = jpdom_autoglo
	1115	ELSE
	1116	ll_depth_spec = .FALSE.
	1117	ENDIF
	1118	IF( idom == jpdom_autoglo .OR. idom == jpdom_autodta ) THEN
	1119	IF( idom == jpdom_autoglo ) THEN ; idom = jpdom_global
	1120	ELSE ; idom = jpdom_data
[544]	1121	ENDIF
[9367]	1122	ind1 = INDEX( clname, '_', back = .TRUE. ) + 1
	1123	ind2 = INDEX( clname, '.', back = .TRUE. ) - 1
	1124	IF( ind2 > ind1 ) THEN ; IF( VERIFY( clname(ind1:ind2), '0123456789' ) == 0 ) idom = jpdom_local ; ENDIF
	1125	ENDIF
	1126	! Identify the domain in case of jpdom_local definition
	1127	IF( idom == jpdom_local ) THEN
	1128	IF( idimsz(1) == jpi .AND. idimsz(2) == jpj ) THEN ; idom = jpdom_local_full
	1129	ELSEIF( idimsz(1) == nlci .AND. idimsz(2) == nlcj ) THEN ; idom = jpdom_local_noextra
	1130	ELSEIF( idimsz(1) == (nlei - nldi + 1) .AND. idimsz(2) == (nlej - nldj + 1) ) THEN ; idom = jpdom_local_noovlap
	1131	ELSE ; CALL ctl_stop( trim(clinfo), 'impossible to identify the local domain' )
	1132	ENDIF
	1133	ENDIF
	1134	!
	1135	! check the consistency between input array and data rank in the file
	1136	!
	1137	! initializations
	1138	itime = 1
	1139	IF( PRESENT(ktime) ) itime = ktime
	1140	!
	1141	irankpv = 1 * COUNT( (/PRESENT(pv_r1d)/) ) + 2 * COUNT( (/PRESENT(pv_r2d)/) ) + 3 * COUNT( (/PRESENT(pv_r3d)/) )
	1142	WRITE(clrankpv, fmt='(i1)') irankpv
	1143	WRITE(cldmspc , fmt='(i1)') idmspc
	1144	!
[12377]	1145	!!GS: we consider 2D data as 3D data with vertical dim size = 1
	1146	!IF( idmspc < irankpv ) THEN
	1147	! CALL ctl_stop( TRIM(clinfo), 'The file has only '//cldmspc//' spatial dimension', &
	1148	! & 'it is impossible to read a '//clrankpv//'D array from this file...' )
	1149	!ELSEIF( idmspc == irankpv ) THEN
	1150	IF( idmspc == irankpv ) THEN
[9367]	1151	IF( PRESENT(pv_r1d) .AND. idom /= jpdom_unknown ) &
	1152	& CALL ctl_stop( TRIM(clinfo), 'case not coded...You must use jpdom_unknown' )
	1153	ELSEIF( idmspc > irankpv ) THEN
	1154	IF( PRESENT(pv_r2d) .AND. itime == 1 .AND. idimsz(3) == 1 .AND. idmspc == 3 ) THEN
	1155	CALL ctl_warn( trim(clinfo), '2D array but 3 spatial dimensions for the data...' , &
	1156	& 'As the size of the z dimension is 1 and as we try to read the first record, ', &
	1157	& 'we accept this case, even if there is a possible mix-up between z and time dimension' )
	1158	idmspc = idmspc - 1
	1159	ELSE
	1160	CALL ctl_stop( TRIM(clinfo), 'To keep iom lisibility, when reading a '//clrankpv//'D array,' , &
	1161	& 'we do not accept data with '//cldmspc//' spatial dimensions', &
	1162	& 'Use ncwa -a to suppress the unnecessary dimensions' )
	1163	ENDIF
	1164	ENDIF
	1165	!
	1166	! definition of istart and icnt
	1167	!
	1168	icnt (:) = 1
	1169	istart(:) = 1
	1170	istart(idmspc+1) = itime
	1171
	1172	IF( PRESENT(kstart) .AND. .NOT. ll_depth_spec ) THEN
	1173	istart(1:idmspc) = kstart(1:idmspc)
	1174	icnt (1:idmspc) = kcount(1:idmspc)
	1175	ELSE
	1176	IF(idom == jpdom_unknown ) THEN
	1177	icnt(1:idmspc) = idimsz(1:idmspc)
	1178	ELSE
	1179	IF( .NOT. PRESENT(pv_r1d) ) THEN ! not a 1D array
	1180	IF( idom == jpdom_data ) THEN
	1181	jstartrow = 1
	1182	IF( luse_jattr ) THEN
	1183	CALL iom_getatt(kiomid, 'open_ocean_jstart', jstartrow ) ! -999 is returned if the attribute is not found
	1184	jstartrow = MAX(1,jstartrow)
	1185	ENDIF
	1186	istart(1:2) = (/ mig(1), mjg(1) + jstartrow - 1 /) ! icnt(1:2) done below
	1187	ELSEIF( idom == jpdom_global ) THEN ; istart(1:2) = (/ nimpp , njmpp /) ! icnt(1:2) done below
[5118]	1188	ENDIF
[9367]	1189	! we do not read the overlap -> we start to read at nldi, nldj
[679]	1190	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1191	! IF( idom /= jpdom_local_noovlap ) istart(1:2) = istart(1:2) + (/ nldi - 1, nldj - 1 /)
[9367]	1192	IF( llnoov .AND. idom /= jpdom_local_noovlap ) istart(1:2) = istart(1:2) + (/ nldi - 1, nldj - 1 /)
[679]	1193	! we do not read the overlap and the extra-halos -> from nldi to nlei and from nldj to nlej
	1194	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1195	! icnt(1:2) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
[9367]	1196	IF( llnoov ) THEN ; icnt(1:2) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
	1197	ELSE ; icnt(1:2) = (/ nlci , nlcj /)
[544]	1198	ENDIF
[9367]	1199	IF( PRESENT(pv_r3d) ) THEN
	1200	IF( idom == jpdom_data ) THEN ; icnt(3) = inlev
	1201	ELSEIF( ll_depth_spec .AND. PRESENT(kstart) ) THEN ; istart(3) = kstart(3) ; icnt(3) = kcount(3)
	1202	ELSE ; icnt(3) = inlev
	1203	ENDIF
	1204	ENDIF
[544]	1205	ENDIF
	1206	ENDIF
[679]	1207	ENDIF
[544]	1208
[9367]	1209	! check that istart and icnt can be used with this file
	1210	!-
	1211	DO jl = 1, jpmax_dims
	1212	itmp = istart(jl)+icnt(jl)-1
	1213	IF( itmp > idimsz(jl) .AND. idimsz(jl) /= 0 ) THEN
	1214	WRITE( ctmp1, FMT="('(istart(', i1, ') + icnt(', i1, ') - 1) = ', i5)" ) jl, jl, itmp
	1215	WRITE( ctmp2, FMT="(' is larger than idimsz(', i1,') = ', i5)" ) jl, idimsz(jl)
	1216	CALL ctl_stop( trim(clinfo), 'start and count too big regarding to the size of the data, ', ctmp1, ctmp2 )
	1217	ENDIF
	1218	END DO
[544]	1219
[9367]	1220	! check that icnt matches the input array
	1221	!-
	1222	IF( idom == jpdom_unknown ) THEN
	1223	IF( irankpv == 1 ) ishape(1:1) = SHAPE(pv_r1d)
	1224	IF( irankpv == 2 ) ishape(1:2) = SHAPE(pv_r2d)
	1225	IF( irankpv == 3 ) ishape(1:3) = SHAPE(pv_r3d)
	1226	ctmp1 = 'd'
	1227	ELSE
	1228	IF( irankpv == 2 ) THEN
[679]	1229	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1230	! ishape(1:2) = SHAPE(pv_r2d(nldi:nlei,nldj:nlej )) ; ctmp1 = 'd(nldi:nlei,nldj:nlej)'
[9367]	1231	IF( llnoov ) THEN ; ishape(1:2)=SHAPE(pv_r2d(nldi:nlei,nldj:nlej )) ; ctmp1='d(nldi:nlei,nldj:nlej)'
	1232	ELSE ; ishape(1:2)=SHAPE(pv_r2d(1 :nlci,1 :nlcj )) ; ctmp1='d(1:nlci,1:nlcj)'
	1233	ENDIF
[544]	1234	ENDIF
[9367]	1235	IF( irankpv == 3 ) THEN
[679]	1236	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1237	! ishape(1:3) = SHAPE(pv_r3d(nldi:nlei,nldj:nlej,:)) ; ctmp1 = 'd(nldi:nlei,nldj:nlej,:)'
[9367]	1238	IF( llnoov ) THEN ; ishape(1:3)=SHAPE(pv_r3d(nldi:nlei,nldj:nlej,:)) ; ctmp1='d(nldi:nlei,nldj:nlej,:)'
	1239	ELSE ; ishape(1:3)=SHAPE(pv_r3d(1 :nlci,1 :nlcj,:)) ; ctmp1='d(1:nlci,1:nlcj,:)'
	1240	ENDIF
[544]	1241	ENDIF
[679]	1242	ENDIF
	1243
[9367]	1244	DO jl = 1, irankpv
	1245	WRITE( ctmp2, FMT="(', ', i1,'): ', i5,' /= icnt(', i1,'):', i5)" ) jl, ishape(jl), jl, icnt(jl)
	1246	IF( ishape(jl) /= icnt(jl) ) CALL ctl_stop( TRIM(clinfo), 'size(pv_r'//clrankpv//TRIM(ctmp1)//TRIM(ctmp2) )
	1247	END DO
[679]	1248
[9367]	1249	ENDIF
[544]	1250
[9367]	1251	! read the data
	1252	!-
	1253	IF( idvar > 0 .AND. istop == nstop ) THEN ! no additional errors until this point...
	1254	!
[679]	1255	! find the right index of the array to be read
	1256	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1257	! IF( idom /= jpdom_unknown ) THEN ; ix1 = nldi ; ix2 = nlei ; iy1 = nldj ; iy2 = nlej
	1258	! ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1259	! ENDIF
[9367]	1260	IF( llnoov ) THEN
	1261	IF( idom /= jpdom_unknown ) THEN ; ix1 = nldi ; ix2 = nlei ; iy1 = nldj ; iy2 = nlej
	1262	ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1263	ENDIF
	1264	ELSE
	1265	IF( idom /= jpdom_unknown ) THEN ; ix1 = 1 ; ix2 = nlci ; iy1 = 1 ; iy2 = nlcj
	1266	ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1267	ENDIF
[679]	1268	ENDIF
	1269
[10425]	1270	CALL iom_nf90_get( kiomid, idvar, inbdim, istart, icnt, ix1, ix2, iy1, iy2, pv_r1d, pv_r2d, pv_r3d )
[679]	1271
[9367]	1272	IF( istop == nstop ) THEN ! no additional errors until this point...
	1273	IF(lwp) WRITE(numout,"(10x,' read ',a,' (rec: ',i6,') in ',a,' ok')") TRIM(cdvar), itime, TRIM(iom_file(kiomid)%name)
	1274
	1275	!--- overlap areas and extra hallows (mpp)
	1276	IF( PRESENT(pv_r2d) .AND. idom /= jpdom_unknown ) THEN
[11536]	1277	CALL lbc_lnk( 'iom', pv_r2d,'Z', -999., kfillmode = jpfillnothing )
[9367]	1278	ELSEIF( PRESENT(pv_r3d) .AND. idom /= jpdom_unknown ) THEN
	1279	! this if could be simplified with the new lbc_lnk that works with any size of the 3rd dimension
	1280	IF( icnt(3) == inlev ) THEN
[11536]	1281	CALL lbc_lnk( 'iom', pv_r3d,'Z', -999., kfillmode = jpfillnothing )
[9367]	1282	ELSE ! put some arbitrary value (a call to lbc_lnk will be done later...)
	1283	DO jj = nlcj+1, jpj ; pv_r3d(1:nlci, jj, :) = pv_r3d(1:nlci, nlej, :) ; END DO
	1284	DO ji = nlci+1, jpi ; pv_r3d(ji , : , :) = pv_r3d(nlei , : , :) ; END DO
	1285	ENDIF
[679]	1286	ENDIF
[9367]	1287	!
	1288	ELSE
	1289	! return if istop == nstop is false
	1290	RETURN
[679]	1291	ENDIF
[9367]	1292	ELSE
	1293	! return if statment idvar > 0 .AND. istop == nstop is false
	1294	RETURN
	1295	ENDIF
	1296	!
	1297	ELSE ! read using XIOS. Only if KEY_IOMPUT is defined
	1298	#if defined key_iomput
	1299	!would be good to be able to check which context is active and swap only if current is not restart
	1300	IF( PRESENT(pv_r3d) ) THEN
[9535]	1301	pv_r3d(:, :, :) = 0.
[9367]	1302	if(lwp) write(numout,*) 'XIOS RST READ (3D): ',trim(cdvar)
	1303	CALL xios_recv_field( trim(cdvar), pv_r3d)
	1304	IF(idom /= jpdom_unknown ) then
[11536]	1305	CALL lbc_lnk( 'iom', pv_r3d,'Z', -999., kfillmode = jpfillnothing)
[679]	1306	ENDIF
[9367]	1307	ELSEIF( PRESENT(pv_r2d) ) THEN
[9535]	1308	pv_r2d(:, :) = 0.
[9367]	1309	if(lwp) write(numout,*) 'XIOS RST READ (2D): ', trim(cdvar)
	1310	CALL xios_recv_field( trim(cdvar), pv_r2d)
	1311	IF(idom /= jpdom_unknown ) THEN
[11536]	1312	CALL lbc_lnk('iom', pv_r2d,'Z',-999., kfillmode = jpfillnothing)
[9367]	1313	ENDIF
	1314	ELSEIF( PRESENT(pv_r1d) ) THEN
[9535]	1315	pv_r1d(:) = 0.
[9367]	1316	if(lwp) write(numout,*) 'XIOS RST READ (1D): ', trim(cdvar)
	1317	CALL xios_recv_field( trim(cdvar), pv_r1d)
[544]	1318	ENDIF
[9367]	1319	#else
	1320	istop = istop + 1
	1321	clinfo = 'Can not use XIOS in iom_get_123d, file: '//trim(clname)//', var:'//trim(cdvar)
	1322	#endif
[544]	1323	ENDIF
[9367]	1324	!some final adjustments
	1325	! C1D case : always call lbc_lnk to replicate the central value over the whole 3X3 domain
[10425]	1326	IF( lk_c1d .AND. PRESENT(pv_r2d) ) CALL lbc_lnk( 'iom', pv_r2d,'Z',1. )
	1327	IF( lk_c1d .AND. PRESENT(pv_r3d) ) CALL lbc_lnk( 'iom', pv_r3d,'Z',1. )
[9367]	1328
	1329	!--- Apply scale_factor and offset
	1330	zscf = iom_file(kiomid)%scf(idvar) ! scale factor
	1331	zofs = iom_file(kiomid)%ofs(idvar) ! offset
	1332	IF( PRESENT(pv_r1d) ) THEN
	1333	IF( zscf /= 1. ) pv_r1d(:) = pv_r1d(:) * zscf
	1334	IF( zofs /= 0. ) pv_r1d(:) = pv_r1d(:) + zofs
	1335	ELSEIF( PRESENT(pv_r2d) ) THEN
	1336	IF( zscf /= 1.) pv_r2d(:,:) = pv_r2d(:,:) * zscf
	1337	IF( zofs /= 0.) pv_r2d(:,:) = pv_r2d(:,:) + zofs
	1338	ELSEIF( PRESENT(pv_r3d) ) THEN
	1339	IF( zscf /= 1.) pv_r3d(:,:,:) = pv_r3d(:,:,:) * zscf
	1340	IF( zofs /= 0.) pv_r3d(:,:,:) = pv_r3d(:,:,:) + zofs
	1341	ENDIF
[544]	1342	!
	1343	END SUBROUTINE iom_get_123d
	1344
[12276]	1345	SUBROUTINE iom_get_var( cdname, z2d)
	1346	CHARACTER(LEN=*), INTENT(in ) :: cdname
	1347	REAL(wp), DIMENSION(jpi,jpj) :: z2d
	1348	#if defined key_iomput
	1349	IF( xios_field_is_active( cdname, at_current_timestep_arg = .TRUE. ) ) THEN
	1350	z2d(:,:) = 0._wp
	1351	CALL xios_recv_field( cdname, z2d)
	1352	ENDIF
	1353	#else
	1354	IF( .FALSE. ) WRITE(numout,*) cdname, z2d ! useless test to avoid compilation warnings
	1355	#endif
	1356	END SUBROUTINE iom_get_var
[544]	1357
[12276]	1358
[10522]	1359	FUNCTION iom_getszuld ( kiomid )
	1360	!!-----------------------------------------------------------------------
	1361	!! * FUNCTION iom_getszuld *
[544]	1362	!!
[10522]	1363	!! ** Purpose : get the size of the unlimited dimension in a file
	1364	!! (return -1 if not found)
	1365	!!-----------------------------------------------------------------------
	1366	INTEGER, INTENT(in ) :: kiomid ! file Identifier
[544]	1367	!
[10522]	1368	INTEGER :: iom_getszuld
	1369	!!-----------------------------------------------------------------------
	1370	iom_getszuld = -1
[679]	1371	IF( kiomid > 0 ) THEN
[10523]	1372	IF( iom_file(kiomid)%iduld > 0 ) iom_getszuld = iom_file(kiomid)%lenuld
[544]	1373	ENDIF
[10522]	1374	END FUNCTION iom_getszuld
	1375
[544]	1376
	1377	!!----------------------------------------------------------------------
[10425]	1378	!! INTERFACE iom_chkatt
[2528]	1379	!!----------------------------------------------------------------------
[10425]	1380	SUBROUTINE iom_chkatt( kiomid, cdatt, llok, ksize, cdvar )
[2528]	1381	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1382	CHARACTER(len=*), INTENT(in ) :: cdatt ! Name of the attribute
[10425]	1383	LOGICAL , INTENT( out) :: llok ! Error code
	1384	INTEGER , INTENT( out), OPTIONAL :: ksize ! Size of the attribute array
[7646]	1385	CHARACTER(len=*), INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[2528]	1386	!
	1387	IF( kiomid > 0 ) THEN
[10425]	1388	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_chkatt( kiomid, cdatt, llok, ksize=ksize, cdvar=cdvar )
[2528]	1389	ENDIF
[10425]	1390	!
	1391	END SUBROUTINE iom_chkatt
	1392
	1393	!!----------------------------------------------------------------------
	1394	!! INTERFACE iom_getatt
	1395	!!----------------------------------------------------------------------
	1396	SUBROUTINE iom_g0d_iatt( kiomid, cdatt, katt0d, cdvar )
	1397	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1398	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1399	INTEGER , INTENT( out) :: katt0d ! read field
	1400	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1401	!
	1402	IF( kiomid > 0 ) THEN
	1403	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, katt0d = katt0d, cdvar=cdvar )
	1404	ENDIF
[7646]	1405	END SUBROUTINE iom_g0d_iatt
[2528]	1406
[10425]	1407	SUBROUTINE iom_g1d_iatt( kiomid, cdatt, katt1d, cdvar )
	1408	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1409	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1410	INTEGER, DIMENSION(:) , INTENT( out) :: katt1d ! read field
	1411	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1412	!
	1413	IF( kiomid > 0 ) THEN
[10425]	1414	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, katt1d = katt1d, cdvar=cdvar )
[7646]	1415	ENDIF
[10425]	1416	END SUBROUTINE iom_g1d_iatt
	1417
	1418	SUBROUTINE iom_g0d_ratt( kiomid, cdatt, patt0d, cdvar )
	1419	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1420	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1421	REAL(wp) , INTENT( out) :: patt0d ! read field
	1422	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1423	!
	1424	IF( kiomid > 0 ) THEN
	1425	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, patt0d = patt0d, cdvar=cdvar )
	1426	ENDIF
[7646]	1427	END SUBROUTINE iom_g0d_ratt
[2528]	1428
[10425]	1429	SUBROUTINE iom_g1d_ratt( kiomid, cdatt, patt1d, cdvar )
	1430	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1431	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1432	REAL(wp), DIMENSION(:), INTENT( out) :: patt1d ! read field
	1433	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1434	!
	1435	IF( kiomid > 0 ) THEN
[10425]	1436	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, patt1d = patt1d, cdvar=cdvar )
[7646]	1437	ENDIF
[10425]	1438	END SUBROUTINE iom_g1d_ratt
	1439
	1440	SUBROUTINE iom_g0d_catt( kiomid, cdatt, cdatt0d, cdvar )
	1441	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1442	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1443	CHARACTER(len=*) , INTENT( out) :: cdatt0d ! read field
	1444	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1445	!
	1446	IF( kiomid > 0 ) THEN
	1447	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, cdatt0d = cdatt0d, cdvar=cdvar )
	1448	ENDIF
[7646]	1449	END SUBROUTINE iom_g0d_catt
	1450
[10425]	1451
[2528]	1452	!!----------------------------------------------------------------------
[7646]	1453	!! INTERFACE iom_putatt
	1454	!!----------------------------------------------------------------------
[10425]	1455	SUBROUTINE iom_p0d_iatt( kiomid, cdatt, katt0d, cdvar )
	1456	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1457	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1458	INTEGER , INTENT(in ) :: katt0d ! written field
	1459	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1460	!
	1461	IF( kiomid > 0 ) THEN
[10425]	1462	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, katt0d = katt0d, cdvar=cdvar )
[7646]	1463	ENDIF
	1464	END SUBROUTINE iom_p0d_iatt
	1465
[10425]	1466	SUBROUTINE iom_p1d_iatt( kiomid, cdatt, katt1d, cdvar )
	1467	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1468	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1469	INTEGER, DIMENSION(:) , INTENT(in ) :: katt1d ! written field
	1470	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1471	!
	1472	IF( kiomid > 0 ) THEN
[10425]	1473	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, katt1d = katt1d, cdvar=cdvar )
[7646]	1474	ENDIF
[10425]	1475	END SUBROUTINE iom_p1d_iatt
	1476
	1477	SUBROUTINE iom_p0d_ratt( kiomid, cdatt, patt0d, cdvar )
	1478	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1479	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1480	REAL(wp) , INTENT(in ) :: patt0d ! written field
	1481	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1482	!
	1483	IF( kiomid > 0 ) THEN
	1484	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, patt0d = patt0d, cdvar=cdvar )
	1485	ENDIF
[7646]	1486	END SUBROUTINE iom_p0d_ratt
	1487
[10425]	1488	SUBROUTINE iom_p1d_ratt( kiomid, cdatt, patt1d, cdvar )
	1489	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1490	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1491	REAL(wp), DIMENSION(:), INTENT(in ) :: patt1d ! written field
	1492	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1493	!
	1494	IF( kiomid > 0 ) THEN
[10425]	1495	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, patt1d = patt1d, cdvar=cdvar )
[7646]	1496	ENDIF
[10425]	1497	END SUBROUTINE iom_p1d_ratt
	1498
	1499	SUBROUTINE iom_p0d_catt( kiomid, cdatt, cdatt0d, cdvar )
	1500	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1501	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1502	CHARACTER(len=*) , INTENT(in ) :: cdatt0d ! written field
	1503	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1504	!
	1505	IF( kiomid > 0 ) THEN
	1506	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, cdatt0d = cdatt0d, cdvar=cdvar )
	1507	ENDIF
[7646]	1508	END SUBROUTINE iom_p0d_catt
	1509
[10425]	1510
[7646]	1511	!!----------------------------------------------------------------------
[544]	1512	!! INTERFACE iom_rstput
	1513	!!----------------------------------------------------------------------
[9367]	1514	SUBROUTINE iom_rp0d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1515	INTEGER , INTENT(in) :: kt ! ocean time-step
	1516	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1517	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1518	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[556]	1519	REAL(wp) , INTENT(in) :: pvar ! written field
[544]	1520	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1521	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1522	LOGICAL :: llx ! local xios write flag
[544]	1523	INTEGER :: ivid ! variable id
[9367]	1524
	1525	llx = .FALSE.
	1526	IF(PRESENT(ldxios)) llx = ldxios
	1527	IF( llx ) THEN
	1528	#ifdef key_iomput
	1529	IF( kt == kwrite ) THEN
	1530	IF(lwp) write(numout,*) 'RESTART: write (XIOS 0D) ',trim(cdvar)
	1531	CALL xios_send_field(trim(cdvar), pvar)
[12950]	1532	ELSE
	1533	IF(lwp) write(numout,*) 'RESTART: define (XIOS 0D) ',trim(cdvar)
	1534	CALL iom_set_rstw_active( trim(cdvar), rd0 = pvar )
[9367]	1535	ENDIF
	1536	#endif
	1537	ELSE
	1538	IF( kiomid > 0 ) THEN
	1539	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1540	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1541	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r0d = pvar )
[9367]	1542	ENDIF
[679]	1543	ENDIF
	1544	ENDIF
[550]	1545	END SUBROUTINE iom_rp0d
[544]	1546
[9367]	1547	SUBROUTINE iom_rp1d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1548	INTEGER , INTENT(in) :: kt ! ocean time-step
	1549	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1550	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1551	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1552	REAL(wp) , INTENT(in), DIMENSION( :) :: pvar ! written field
[544]	1553	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1554	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1555	LOGICAL :: llx ! local xios write flag
[544]	1556	INTEGER :: ivid ! variable id
[9367]	1557
	1558	llx = .FALSE.
	1559	IF(PRESENT(ldxios)) llx = ldxios
	1560	IF( llx ) THEN
	1561	#ifdef key_iomput
	1562	IF( kt == kwrite ) THEN
	1563	IF(lwp) write(numout,*) 'RESTART: write (XIOS 1D) ',trim(cdvar)
	1564	CALL xios_send_field(trim(cdvar), pvar)
[12950]	1565	ELSE
	1566	IF(lwp) write(numout,*) 'RESTART: define (XIOS 1D) ',trim(cdvar)
	1567	CALL iom_set_rstw_active( trim(cdvar), rd1 = pvar )
[9367]	1568	ENDIF
	1569	#endif
	1570	ELSE
	1571	IF( kiomid > 0 ) THEN
	1572	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1573	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1574	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r1d = pvar )
[9367]	1575	ENDIF
[679]	1576	ENDIF
	1577	ENDIF
[550]	1578	END SUBROUTINE iom_rp1d
[544]	1579
[9367]	1580	SUBROUTINE iom_rp2d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1581	INTEGER , INTENT(in) :: kt ! ocean time-step
	1582	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1583	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1584	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1585	REAL(wp) , INTENT(in), DIMENSION(:, : ) :: pvar ! written field
[544]	1586	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1587	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1588	LOGICAL :: llx
[544]	1589	INTEGER :: ivid ! variable id
[9367]	1590
	1591	llx = .FALSE.
	1592	IF(PRESENT(ldxios)) llx = ldxios
	1593	IF( llx ) THEN
	1594	#ifdef key_iomput
	1595	IF( kt == kwrite ) THEN
	1596	IF(lwp) write(numout,*) 'RESTART: write (XIOS 2D) ',trim(cdvar)
	1597	CALL xios_send_field(trim(cdvar), pvar)
[12950]	1598	ELSE
	1599	IF(lwp) write(numout,*) 'RESTART: define (XIOS 2D) ',trim(cdvar)
	1600	CALL iom_set_rstw_active( trim(cdvar), rd2 = pvar )
[9367]	1601	ENDIF
	1602	#endif
	1603	ELSE
	1604	IF( kiomid > 0 ) THEN
	1605	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1606	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1607	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r2d = pvar )
[9367]	1608	ENDIF
[679]	1609	ENDIF
	1610	ENDIF
[550]	1611	END SUBROUTINE iom_rp2d
[544]	1612
[9367]	1613	SUBROUTINE iom_rp3d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1614	INTEGER , INTENT(in) :: kt ! ocean time-step
	1615	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1616	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1617	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1618	REAL(wp) , INTENT(in), DIMENSION(:,:,:) :: pvar ! written field
[544]	1619	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1620	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1621	LOGICAL :: llx ! local xios write flag
[544]	1622	INTEGER :: ivid ! variable id
[9367]	1623
	1624	llx = .FALSE.
	1625	IF(PRESENT(ldxios)) llx = ldxios
	1626	IF( llx ) THEN
	1627	#ifdef key_iomput
	1628	IF( kt == kwrite ) THEN
	1629	IF(lwp) write(numout,*) 'RESTART: write (XIOS 3D) ',trim(cdvar)
	1630	CALL xios_send_field(trim(cdvar), pvar)
[12950]	1631	ELSE
	1632	IF(lwp) write(numout,*) 'RESTART: define (XIOS 3D) ',trim(cdvar)
	1633	CALL iom_set_rstw_active( trim(cdvar), rd3 = pvar )
[9367]	1634	ENDIF
	1635	#endif
	1636	ELSE
	1637	IF( kiomid > 0 ) THEN
	1638	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1639	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1640	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r3d = pvar )
[9367]	1641	ENDIF
[679]	1642	ENDIF
	1643	ENDIF
[550]	1644	END SUBROUTINE iom_rp3d
[1359]	1645
	1646
[10425]	1647	SUBROUTINE iom_delay_rst( cdaction, cdcpnt, kncid )
	1648	!!---------------------------------------------------------------------
	1649	!! Routine iom_delay_rst: used read/write restart related to mpp_delay
	1650	!!
	1651	!!---------------------------------------------------------------------
	1652	CHARACTER(len=*), INTENT(in ) :: cdaction !
	1653	CHARACTER(len=*), INTENT(in ) :: cdcpnt
	1654	INTEGER , INTENT(in ) :: kncid
	1655	!
	1656	INTEGER :: ji
	1657	INTEGER :: indim
	1658	LOGICAL :: llattexist
	1659	REAL(wp), ALLOCATABLE, DIMENSION(:) :: zreal1d
	1660	!!---------------------------------------------------------------------
	1661	!
	1662	! ===================================
	1663	IF( TRIM(cdaction) == 'READ' ) THEN ! read restart related to mpp_delay !
	1664	! ===================================
	1665	DO ji = 1, nbdelay
	1666	IF ( c_delaycpnt(ji) == cdcpnt ) THEN
	1667	CALL iom_chkatt( kncid, 'DELAY_'//c_delaylist(ji), llattexist, indim )
	1668	IF( llattexist ) THEN
	1669	ALLOCATE( todelay(ji)%z1d(indim) )
	1670	CALL iom_getatt( kncid, 'DELAY_'//c_delaylist(ji), todelay(ji)%z1d(:) )
	1671	ndelayid(ji) = 0 ! set to 0 to specify that the value was read in the restart
	1672	ENDIF
	1673	ENDIF
	1674	END DO
	1675	! ====================================
	1676	ELSE ! write restart related to mpp_delay !
	1677	! ====================================
	1678	DO ji = 1, nbdelay ! save only ocean delayed global communication variables
	1679	IF ( c_delaycpnt(ji) == cdcpnt ) THEN
	1680	IF( ASSOCIATED(todelay(ji)%z1d) ) THEN
	1681	CALL mpp_delay_rcv(ji) ! make sure %z1d is received
	1682	CALL iom_putatt( kncid, 'DELAY_'//c_delaylist(ji), todelay(ji)%z1d(:) )
	1683	ENDIF
	1684	ENDIF
	1685	END DO
	1686	!
	1687	ENDIF
	1688
	1689	END SUBROUTINE iom_delay_rst
	1690
	1691
	1692
[544]	1693	!!----------------------------------------------------------------------
[1457]	1694	!! INTERFACE iom_put
[1359]	1695	!!----------------------------------------------------------------------
[1738]	1696	SUBROUTINE iom_p0d( cdname, pfield0d )
	1697	CHARACTER(LEN=*), INTENT(in) :: cdname
	1698	REAL(wp) , INTENT(in) :: pfield0d
[11536]	1699	!! REAL(wp) , DIMENSION(jpi,jpj) :: zz ! masson
[1738]	1700	#if defined key_iomput
[11536]	1701	!!clem zz(:,:)=pfield0d
	1702	!!clem CALL xios_send_field(cdname, zz)
	1703	CALL xios_send_field(cdname, (/pfield0d/))
[1738]	1704	#else
	1705	IF( .FALSE. ) WRITE(numout,*) cdname, pfield0d ! useless test to avoid compilation warnings
	1706	#endif
	1707	END SUBROUTINE iom_p0d
	1708
[3294]	1709	SUBROUTINE iom_p1d( cdname, pfield1d )
	1710	CHARACTER(LEN=*) , INTENT(in) :: cdname
	1711	REAL(wp), DIMENSION(:), INTENT(in) :: pfield1d
	1712	#if defined key_iomput
[3695]	1713	CALL xios_send_field( cdname, RESHAPE( (/pfield1d/), (/1,1,SIZE(pfield1d)/) ) )
[3294]	1714	#else
	1715	IF( .FALSE. ) WRITE(numout,*) cdname, pfield1d ! useless test to avoid compilation warnings
	1716	#endif
	1717	END SUBROUTINE iom_p1d
	1718
[1359]	1719	SUBROUTINE iom_p2d( cdname, pfield2d )
	1720	CHARACTER(LEN=*) , INTENT(in) :: cdname
[2715]	1721	REAL(wp), DIMENSION(:,:), INTENT(in) :: pfield2d
[1412]	1722	#if defined key_iomput
[3695]	1723	CALL xios_send_field(cdname, pfield2d)
[1520]	1724	#else
	1725	IF( .FALSE. ) WRITE(numout,*) cdname, pfield2d ! useless test to avoid compilation warnings
[1359]	1726	#endif
	1727	END SUBROUTINE iom_p2d
[544]	1728
[1359]	1729	SUBROUTINE iom_p3d( cdname, pfield3d )
	1730	CHARACTER(LEN=*) , INTENT(in) :: cdname
[2715]	1731	REAL(wp), DIMENSION(:,:,:), INTENT(in) :: pfield3d
[1412]	1732	#if defined key_iomput
[9019]	1733	CALL xios_send_field( cdname, pfield3d )
[1520]	1734	#else
	1735	IF( .FALSE. ) WRITE(numout,*) cdname, pfield3d ! useless test to avoid compilation warnings
[1359]	1736	#endif
	1737	END SUBROUTINE iom_p3d
[544]	1738
[12276]	1739	SUBROUTINE iom_p4d( cdname, pfield4d )
[12377]	1740	CHARACTER(LEN=*) , INTENT(in) :: cdname
[12276]	1741	REAL(wp), DIMENSION(:,:,:,:), INTENT(in) :: pfield4d
[1412]	1742	#if defined key_iomput
[12276]	1743	CALL xios_send_field(cdname, pfield4d)
	1744	#else
	1745	IF( .FALSE. ) WRITE(numout,*) cdname, pfield4d ! useless test to avoid compilation warnings
	1746	#endif
	1747	END SUBROUTINE iom_p4d
	1748
	1749
	1750	#if defined key_iomput
[9019]	1751	!!----------------------------------------------------------------------
[9802]	1752	!! 'key_iomput' XIOS interface
[9019]	1753	!!----------------------------------------------------------------------
[1359]	1754
[9930]	1755	SUBROUTINE iom_set_domain_attr( cdid, ni_glo, nj_glo, ibegin, jbegin, ni, nj, &
[5363]	1756	& data_dim, data_ibegin, data_ni, data_jbegin, data_nj, lonvalue, latvalue, mask, &
[5415]	1757	& nvertex, bounds_lon, bounds_lat, area )
[9019]	1758	!!----------------------------------------------------------------------
	1759	!!----------------------------------------------------------------------
	1760	CHARACTER(LEN=*) , INTENT(in) :: cdid
	1761	INTEGER , OPTIONAL, INTENT(in) :: ni_glo, nj_glo, ibegin, jbegin, ni, nj
	1762	INTEGER , OPTIONAL, INTENT(in) :: data_dim, data_ibegin, data_ni, data_jbegin, data_nj
[9930]	1763	INTEGER , OPTIONAL, INTENT(in) :: nvertex
[9019]	1764	REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: lonvalue, latvalue
	1765	REAL(wp), DIMENSION(:,:), OPTIONAL, INTENT(in) :: bounds_lon, bounds_lat, area
	1766	LOGICAL , DIMENSION(:) , OPTIONAL, INTENT(in) :: mask
	1767	!!----------------------------------------------------------------------
	1768	!
	1769	IF( xios_is_valid_domain (cdid) ) THEN
[4148]	1770	CALL xios_set_domain_attr ( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
	1771	& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
[7646]	1772	& lonvalue_1D=lonvalue, latvalue_1D=latvalue, mask_1D=mask, nvertex=nvertex, bounds_lon_1D=bounds_lon, &
	1773	& bounds_lat_1D=bounds_lat, area=area, type='curvilinear')
[9367]	1774	ENDIF
[9019]	1775	IF( xios_is_valid_domaingroup(cdid) ) THEN
[4148]	1776	CALL xios_set_domaingroup_attr( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
	1777	& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
[7646]	1778	& lonvalue_1D=lonvalue, latvalue_1D=latvalue, mask_1D=mask, nvertex=nvertex, bounds_lon_1D=bounds_lon, &
	1779	& bounds_lat_1D=bounds_lat, area=area, type='curvilinear' )
[3695]	1780	ENDIF
[9019]	1781	!
[4148]	1782	CALL xios_solve_inheritance()
[9019]	1783	!
[3695]	1784	END SUBROUTINE iom_set_domain_attr
	1785
	1786
[9019]	1787	SUBROUTINE iom_set_zoom_domain_attr( cdid, ibegin, jbegin, ni, nj )
	1788	!!----------------------------------------------------------------------
	1789	!!----------------------------------------------------------------------
[9930]	1790	CHARACTER(LEN=*), INTENT(in) :: cdid
	1791	INTEGER , INTENT(in) :: ibegin, jbegin, ni, nj
	1792	!
	1793	TYPE(xios_gridgroup) :: gridgroup_hdl
	1794	TYPE(xios_grid) :: grid_hdl
	1795	TYPE(xios_domain) :: domain_hdl
	1796	TYPE(xios_axis) :: axis_hdl
	1797	CHARACTER(LEN=64) :: cldomrefid ! domain_ref name
	1798	CHARACTER(len=1) :: cl1 ! last character of this name
[9019]	1799	!!----------------------------------------------------------------------
[9930]	1800	!
	1801	IF( xios_is_valid_zoom_domain(cdid) ) THEN
	1802	! define the zoom_domain attributs
	1803	CALL xios_set_zoom_domain_attr( cdid, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj )
	1804	! define a new 2D grid with this new domain
	1805	CALL xios_get_handle("grid_definition", gridgroup_hdl )
	1806	CALL xios_add_child(gridgroup_hdl, grid_hdl, TRIM(cdid)//'_2D' ) ! add a new 2D grid to grid_definition
	1807	CALL xios_add_child(grid_hdl, domain_hdl, TRIM(cdid) ) ! add its domain
	1808	! define a new 3D grid with this new domain
	1809	CALL xios_add_child(gridgroup_hdl, grid_hdl, TRIM(cdid)//'_3D' ) ! add a new 3D grid to grid_definition
	1810	CALL xios_add_child(grid_hdl, domain_hdl, TRIM(cdid) ) ! add its domain
	1811	! vertical axis
	1812	cl1 = cdid(LEN_TRIM(cdid):) ! last letter of cdid
	1813	cl1 = CHAR(ICHAR(cl1)+32) ! from upper to lower case
	1814	CALL xios_add_child(grid_hdl, axis_hdl, 'depth'//cl1) ! add its axis
	1815	ENDIF
	1816	!
[7646]	1817	END SUBROUTINE iom_set_zoom_domain_attr
	1818
	1819
[5415]	1820	SUBROUTINE iom_set_axis_attr( cdid, paxis, bounds )
[9019]	1821	!!----------------------------------------------------------------------
	1822	!!----------------------------------------------------------------------
[4148]	1823	CHARACTER(LEN=*) , INTENT(in) :: cdid
[5415]	1824	REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: paxis
	1825	REAL(wp), DIMENSION(:,:), OPTIONAL, INTENT(in) :: bounds
[9019]	1826	!!----------------------------------------------------------------------
	1827	IF( PRESENT(paxis) ) THEN
	1828	IF( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, n_glo=SIZE(paxis), value=paxis )
	1829	IF( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, n_glo=SIZE(paxis), value=paxis )
[5415]	1830	ENDIF
[9019]	1831	IF( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, bounds=bounds )
	1832	IF( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, bounds=bounds )
[4148]	1833	CALL xios_solve_inheritance()
[3737]	1834	END SUBROUTINE iom_set_axis_attr
	1835
	1836
[4148]	1837	SUBROUTINE iom_set_field_attr( cdid, freq_op, freq_offset )
[9019]	1838	!!----------------------------------------------------------------------
	1839	!!----------------------------------------------------------------------
	1840	CHARACTER(LEN=*) , INTENT(in) :: cdid
	1841	TYPE(xios_duration), OPTIONAL, INTENT(in) :: freq_op
	1842	TYPE(xios_duration), OPTIONAL, INTENT(in) :: freq_offset
	1843	!!----------------------------------------------------------------------
	1844	IF( xios_is_valid_field (cdid) ) CALL xios_set_field_attr ( cdid, freq_op=freq_op, freq_offset=freq_offset )
	1845	IF( xios_is_valid_fieldgroup(cdid) ) CALL xios_set_fieldgroup_attr( cdid, freq_op=freq_op, freq_offset=freq_offset )
[4148]	1846	CALL xios_solve_inheritance()
[3695]	1847	END SUBROUTINE iom_set_field_attr
	1848
	1849
[4148]	1850	SUBROUTINE iom_set_file_attr( cdid, name, name_suffix )
[9019]	1851	!!----------------------------------------------------------------------
	1852	!!----------------------------------------------------------------------
[4148]	1853	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3695]	1854	CHARACTER(LEN=*),OPTIONAL , INTENT(in) :: name, name_suffix
[9019]	1855	!!----------------------------------------------------------------------
	1856	IF( xios_is_valid_file (cdid) ) CALL xios_set_file_attr ( cdid, name=name, name_suffix=name_suffix )
	1857	IF( xios_is_valid_filegroup(cdid) ) CALL xios_set_filegroup_attr( cdid, name=name, name_suffix=name_suffix )
[4148]	1858	CALL xios_solve_inheritance()
[3771]	1859	END SUBROUTINE iom_set_file_attr
[3695]	1860
	1861
[4148]	1862	SUBROUTINE iom_get_file_attr( cdid, name, name_suffix, output_freq )
[9019]	1863	!!----------------------------------------------------------------------
	1864	!!----------------------------------------------------------------------
[4148]	1865	CHARACTER(LEN=*) , INTENT(in ) :: cdid
[7646]	1866	CHARACTER(LEN=*),OPTIONAL , INTENT(out) :: name, name_suffix
	1867	TYPE(xios_duration), OPTIONAL , INTENT(out) :: output_freq
[4148]	1868	LOGICAL :: llexist1,llexist2,llexist3
	1869	!---------------------------------------------------------------------
	1870	IF( PRESENT( name ) ) name = '' ! default values
	1871	IF( PRESENT( name_suffix ) ) name_suffix = ''
[7646]	1872	IF( PRESENT( output_freq ) ) output_freq = xios_duration(0,0,0,0,0,0)
[9019]	1873	IF( xios_is_valid_file (cdid) ) THEN
[4148]	1874	CALL xios_solve_inheritance()
	1875	CALL xios_is_defined_file_attr ( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
	1876	IF(llexist1) CALL xios_get_file_attr ( cdid, name = name )
	1877	IF(llexist2) CALL xios_get_file_attr ( cdid, name_suffix = name_suffix )
	1878	IF(llexist3) CALL xios_get_file_attr ( cdid, output_freq = output_freq )
	1879	ENDIF
[9019]	1880	IF( xios_is_valid_filegroup(cdid) ) THEN
[4148]	1881	CALL xios_solve_inheritance()
	1882	CALL xios_is_defined_filegroup_attr( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
	1883	IF(llexist1) CALL xios_get_filegroup_attr( cdid, name = name )
	1884	IF(llexist2) CALL xios_get_filegroup_attr( cdid, name_suffix = name_suffix )
	1885	IF(llexist3) CALL xios_get_filegroup_attr( cdid, output_freq = output_freq )
	1886	ENDIF
	1887	END SUBROUTINE iom_get_file_attr
	1888
	1889
	1890	SUBROUTINE iom_set_grid_attr( cdid, mask )
[9019]	1891	!!----------------------------------------------------------------------
	1892	!!----------------------------------------------------------------------
[4148]	1893	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3771]	1894	LOGICAL, DIMENSION(:,:,:), OPTIONAL, INTENT(in) :: mask
[9019]	1895	!!----------------------------------------------------------------------
	1896	IF( xios_is_valid_grid (cdid) ) CALL xios_set_grid_attr ( cdid, mask_3D=mask )
	1897	IF( xios_is_valid_gridgroup(cdid) ) CALL xios_set_gridgroup_attr( cdid, mask_3D=mask )
[4148]	1898	CALL xios_solve_inheritance()
[3771]	1899	END SUBROUTINE iom_set_grid_attr
[3695]	1900
[4152]	1901	SUBROUTINE iom_setkt( kt, cdname )
[9019]	1902	!!----------------------------------------------------------------------
	1903	!!----------------------------------------------------------------------
[4152]	1904	INTEGER , INTENT(in) :: kt
	1905	CHARACTER(LEN=*), INTENT(in) :: cdname
[9019]	1906	!!----------------------------------------------------------------------
[4152]	1907	CALL iom_swap( cdname ) ! swap to cdname context
	1908	CALL xios_update_calendar(kt)
[9019]	1909	IF( cdname /= TRIM(cxios_context) ) CALL iom_swap( TRIM(cxios_context) ) ! return back to nemo context
[4152]	1910	END SUBROUTINE iom_setkt
[3695]	1911
[4152]	1912	SUBROUTINE iom_context_finalize( cdname )
[9019]	1913	!!----------------------------------------------------------------------
	1914	!!----------------------------------------------------------------------
[4152]	1915	CHARACTER(LEN=*), INTENT(in) :: cdname
[9367]	1916	CHARACTER(LEN=120) :: clname
[9019]	1917	!!----------------------------------------------------------------------
[9367]	1918	clname = cdname
[12957]	1919	IF(lwp) write(numout, *) 'Finalize: ', TRIM(cdname)
[9367]	1920	IF( TRIM(Agrif_CFixed()) .NE. '0' ) clname = TRIM(Agrif_CFixed())//"_"//clname
	1921	IF( xios_is_valid_context(clname) ) THEN
[4990]	1922	CALL iom_swap( cdname ) ! swap to cdname context
	1923	CALL xios_context_finalize() ! finalize the context
[5407]	1924	IF( cdname /= TRIM(cxios_context) ) CALL iom_swap( TRIM(cxios_context) ) ! return back to nemo context
[4990]	1925	ENDIF
[9367]	1926	!
[4152]	1927	END SUBROUTINE iom_context_finalize
	1928
	1929
[9984]	1930	SUBROUTINE set_grid( cdgrd, plon, plat, ldxios, ldrxios )
[1359]	1931	!!----------------------------------------------------------------------
[4148]	1932	!! * ROUTINE set_grid *
[1359]	1933	!!
[1725]	1934	!! ** Purpose : define horizontal grids
[1359]	1935	!!----------------------------------------------------------------------
[3771]	1936	CHARACTER(LEN=1) , INTENT(in) :: cdgrd
[1359]	1937	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plon
	1938	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plat
[3771]	1939	!
[9019]	1940	INTEGER :: ni, nj
[3771]	1941	REAL(wp), DIMENSION(jpi,jpj,jpk) :: zmask
[9984]	1942	LOGICAL, INTENT(IN) :: ldxios, ldrxios
[9019]	1943	!!----------------------------------------------------------------------
	1944	!
	1945	ni = nlei-nldi+1
	1946	nj = nlej-nldj+1
	1947	!
[7646]	1948	CALL iom_set_domain_attr("grid_"//cdgrd, ni_glo=jpiglo, nj_glo=jpjglo, ibegin=nimpp+nldi-2, jbegin=njmpp+nldj-2, ni=ni, nj=nj)
[3771]	1949	CALL iom_set_domain_attr("grid_"//cdgrd, data_dim=2, data_ibegin = 1-nldi, data_ni = jpi, data_jbegin = 1-nldj, data_nj = jpj)
[9984]	1950	!don't define lon and lat for restart reading context.
	1951	IF ( .NOT.ldrxios ) &
	1952	CALL iom_set_domain_attr("grid_"//cdgrd, lonvalue = RESHAPE(plon(nldi:nlei, nldj:nlej),(/ ni*nj /)), &
[3771]	1953	& latvalue = RESHAPE(plat(nldi:nlei, nldj:nlej),(/ ni*nj /)))
[9019]	1954	!
[9367]	1955	IF ( ln_mskland .AND. (.NOT.ldxios) ) THEN
[3771]	1956	! mask land points, keep values on coast line -> specific mask for U, V and W points
	1957	SELECT CASE ( cdgrd )
	1958	CASE('T') ; zmask(:,:,:) = tmask(:,:,:)
[10425]	1959	CASE('U') ; zmask(2:jpim1,:,:) = tmask(2:jpim1,:,:) + tmask(3:jpi,:,:) ; CALL lbc_lnk( 'iom', zmask, 'U', 1. )
	1960	CASE('V') ; zmask(:,2:jpjm1,:) = tmask(:,2:jpjm1,:) + tmask(:,3:jpj,:) ; CALL lbc_lnk( 'iom', zmask, 'V', 1. )
[3771]	1961	CASE('W') ; zmask(:,:,2:jpk ) = tmask(:,:,1:jpkm1) + tmask(:,:,2:jpk) ; zmask(:,:,1) = tmask(:,:,1)
	1962	END SELECT
	1963	!
[7646]	1964	CALL iom_set_domain_attr( "grid_"//cdgrd , mask = RESHAPE(zmask(nldi:nlei,nldj:nlej,1),(/ni*nj /)) /= 0. )
[4148]	1965	CALL iom_set_grid_attr ( "grid_"//cdgrd//"_3D", mask = RESHAPE(zmask(nldi:nlei,nldj:nlej,:),(/ni,nj,jpk/)) /= 0. )
[3771]	1966	ENDIF
[9019]	1967	!
[1359]	1968	END SUBROUTINE set_grid
	1969
[1725]	1970
[5415]	1971	SUBROUTINE set_grid_bounds( cdgrd, plon_cnr, plat_cnr, plon_pnt, plat_pnt )
[5363]	1972	!!----------------------------------------------------------------------
	1973	!! * ROUTINE set_grid_bounds *
	1974	!!
	1975	!! ** Purpose : define horizontal grid corners
	1976	!!
	1977	!!----------------------------------------------------------------------
[9019]	1978	CHARACTER(LEN=1) , INTENT(in) :: cdgrd
	1979	REAL(wp), DIMENSION(jpi,jpj) , INTENT(in) :: plon_cnr, plat_cnr ! Lat/lon coord. of a contiguous vertex of cell (i,j)
	1980	REAL(wp), DIMENSION(jpi,jpj), OPTIONAL, INTENT(in) :: plon_pnt, plat_pnt ! Lat/lon coord. of the point of cell (i,j)
[5363]	1981	!
[9019]	1982	INTEGER :: ji, jj, jn, ni, nj
[12377]	1983	INTEGER :: icnr, jcnr ! Offset such that the vertex coordinate (i+icnr,j+jcnr)
	1984	! ! represents the bottom-left corner of cell (i,j)
[9019]	1985	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: z_bnds ! Lat/lon coordinates of the vertices of cell (i,j)
	1986	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: z_fld ! Working array to determine where to rotate cells
	1987	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: z_rot ! Lat/lon working array for rotation of cells
	1988	!!----------------------------------------------------------------------
[5415]	1989	!
[9019]	1990	ALLOCATE( z_bnds(4,jpi,jpj,2), z_fld(jpi,jpj), z_rot(4,2) )
[5363]	1991	!
[5415]	1992	! Offset of coordinate representing bottom-left corner
[5363]	1993	SELECT CASE ( TRIM(cdgrd) )
[9019]	1994	CASE ('T', 'W') ; icnr = -1 ; jcnr = -1
	1995	CASE ('U') ; icnr = 0 ; jcnr = -1
	1996	CASE ('V') ; icnr = -1 ; jcnr = 0
[5363]	1997	END SELECT
[9019]	1998	!
	1999	ni = nlei-nldi+1 ! Dimensions of subdomain interior
	2000	nj = nlej-nldj+1
	2001	!
[5363]	2002	z_fld(:,:) = 1._wp
[10425]	2003	CALL lbc_lnk( 'iom', z_fld, cdgrd, -1. ) ! Working array for location of northfold
[9019]	2004	!
[5363]	2005	! Cell vertices that can be defined
	2006	DO jj = 2, jpjm1
	2007	DO ji = 2, jpim1
[5415]	2008	z_bnds(1,ji,jj,1) = plat_cnr(ji+icnr, jj+jcnr ) ! Bottom-left
	2009	z_bnds(2,ji,jj,1) = plat_cnr(ji+icnr+1,jj+jcnr ) ! Bottom-right
	2010	z_bnds(3,ji,jj,1) = plat_cnr(ji+icnr+1,jj+jcnr+1) ! Top-right
	2011	z_bnds(4,ji,jj,1) = plat_cnr(ji+icnr, jj+jcnr+1) ! Top-left
	2012	z_bnds(1,ji,jj,2) = plon_cnr(ji+icnr, jj+jcnr ) ! Bottom-left
	2013	z_bnds(2,ji,jj,2) = plon_cnr(ji+icnr+1,jj+jcnr ) ! Bottom-right
	2014	z_bnds(3,ji,jj,2) = plon_cnr(ji+icnr+1,jj+jcnr+1) ! Top-right
	2015	z_bnds(4,ji,jj,2) = plon_cnr(ji+icnr, jj+jcnr+1) ! Top-left
[5363]	2016	END DO
	2017	END DO
[9019]	2018	!
[5363]	2019	! Cell vertices on boundries
	2020	DO jn = 1, 4
[11536]	2021	CALL lbc_lnk( 'iom', z_bnds(jn,:,:,1), cdgrd, 1., pfillval=999._wp )
	2022	CALL lbc_lnk( 'iom', z_bnds(jn,:,:,2), cdgrd, 1., pfillval=999._wp )
[5363]	2023	END DO
[9019]	2024	!
[5415]	2025	! Zero-size cells at closed boundaries if cell points provided,
	2026	! otherwise they are closed cells with unrealistic bounds
	2027	IF( PRESENT(plon_pnt) .AND. PRESENT(plat_pnt) ) THEN
	2028	IF( (nbondi == -1 .OR. nbondi == 2) .AND. .NOT. (jperio == 1 .OR. jperio == 4 .OR. jperio == 6) ) THEN
	2029	DO jn = 1, 4 ! (West or jpni = 1), closed E-W
	2030	z_bnds(jn,1,:,1) = plat_pnt(1,:) ; z_bnds(jn,1,:,2) = plon_pnt(1,:)
	2031	END DO
	2032	ENDIF
	2033	IF( (nbondi == 1 .OR. nbondi == 2) .AND. .NOT. (jperio == 1 .OR. jperio == 4 .OR. jperio == 6) ) THEN
	2034	DO jn = 1, 4 ! (East or jpni = 1), closed E-W
	2035	z_bnds(jn,nlci,:,1) = plat_pnt(nlci,:) ; z_bnds(jn,nlci,:,2) = plon_pnt(nlci,:)
	2036	END DO
	2037	ENDIF
	2038	IF( nbondj == -1 .OR. (nbondj == 2 .AND. jperio /= 2) ) THEN
	2039	DO jn = 1, 4 ! South or (jpnj = 1, not symmetric)
	2040	z_bnds(jn,:,1,1) = plat_pnt(:,1) ; z_bnds(jn,:,1,2) = plon_pnt(:,1)
	2041	END DO
	2042	ENDIF
	2043	IF( (nbondj == 1 .OR. nbondj == 2) .AND. jperio < 3 ) THEN
	2044	DO jn = 1, 4 ! (North or jpnj = 1), no north fold
	2045	z_bnds(jn,:,nlcj,1) = plat_pnt(:,nlcj) ; z_bnds(jn,:,nlcj,2) = plon_pnt(:,nlcj)
	2046	END DO
	2047	ENDIF
[5363]	2048	ENDIF
[9019]	2049	!
	2050	IF( (nbondj == 1 .OR. nbondj == 2) .AND. jperio >= 3 ) THEN ! Rotate cells at the north fold
[5363]	2051	DO jj = 1, jpj
	2052	DO ji = 1, jpi
	2053	IF( z_fld(ji,jj) == -1. ) THEN
	2054	z_rot(1,:) = z_bnds(3,ji,jj,:) ; z_rot(2,:) = z_bnds(4,ji,jj,:)
	2055	z_rot(3,:) = z_bnds(1,ji,jj,:) ; z_rot(4,:) = z_bnds(2,ji,jj,:)
	2056	z_bnds(:,ji,jj,:) = z_rot(:,:)
	2057	ENDIF
	2058	END DO
	2059	END DO
[9019]	2060	ELSE IF( nbondj == 2 .AND. jperio == 2 ) THEN ! Invert cells at the symmetric equator
[5363]	2061	DO ji = 1, jpi
	2062	z_rot(1:2,:) = z_bnds(3:4,ji,1,:)
	2063	z_rot(3:4,:) = z_bnds(1:2,ji,1,:)
	2064	z_bnds(:,ji,1,:) = z_rot(:,:)
	2065	END DO
	2066	ENDIF
[9019]	2067	!
[5363]	2068	CALL iom_set_domain_attr("grid_"//cdgrd, bounds_lat = RESHAPE(z_bnds(:,nldi:nlei,nldj:nlej,1),(/ 4,ni*nj /)), &
[9019]	2069	& bounds_lon = RESHAPE(z_bnds(:,nldi:nlei,nldj:nlej,2),(/ 4,ni*nj /)), nvertex=4 )
	2070	!
[5415]	2071	DEALLOCATE( z_bnds, z_fld, z_rot )
[9019]	2072	!
[5363]	2073	END SUBROUTINE set_grid_bounds
	2074
	2075
[5385]	2076	SUBROUTINE set_grid_znl( plat )
	2077	!!----------------------------------------------------------------------
	2078	!! * ROUTINE set_grid_znl *
	2079	!!
	2080	!! ** Purpose : define grids for zonal mean
	2081	!!
	2082	!!----------------------------------------------------------------------
	2083	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plat
	2084	!
[9019]	2085	INTEGER :: ni, nj, ix, iy
[5385]	2086	REAL(wp), DIMENSION(:), ALLOCATABLE :: zlon
[9019]	2087	!!----------------------------------------------------------------------
	2088	!
	2089	ni=nlei-nldi+1 ! define zonal mean domain (jpj*jpk)
	2090	nj=nlej-nldj+1
	2091	ALLOCATE( zlon(ni*nj) ) ; zlon(:) = 0._wp
	2092	!
[12276]	2093	! CALL dom_ngb( -168.53, 65.03, ix, iy, 'T' ) ! i-line that passes through Bering Strait: Reference latitude (used in plots)
	2094	CALL dom_ngb( 180., 90., ix, iy, 'T' ) ! i-line that passes near the North Pole : Reference latitude (used in plots)
[7646]	2095	CALL iom_set_domain_attr("gznl", ni_glo=jpiglo, nj_glo=jpjglo, ibegin=nimpp+nldi-2, jbegin=njmpp+nldj-2, ni=ni, nj=nj)
[5385]	2096	CALL iom_set_domain_attr("gznl", data_dim=2, data_ibegin = 1-nldi, data_ni = jpi, data_jbegin = 1-nldj, data_nj = jpj)
	2097	CALL iom_set_domain_attr("gznl", lonvalue = zlon, &
	2098	& latvalue = RESHAPE(plat(nldi:nlei, nldj:nlej),(/ ni*nj /)))
[12276]	2099	CALL iom_set_zoom_domain_attr("ptr", ibegin=ix-1, jbegin=0, ni=1, nj=jpjglo)
[5385]	2100	!
	2101	CALL iom_update_file_name('ptr')
	2102	!
	2103	END SUBROUTINE set_grid_znl
	2104
[9019]	2105
[1738]	2106	SUBROUTINE set_scalar
	2107	!!----------------------------------------------------------------------
[4148]	2108	!! * ROUTINE set_scalar *
[1738]	2109	!!
	2110	!! ** Purpose : define fake grids for scalar point
	2111	!!
	2112	!!----------------------------------------------------------------------
[5426]	2113	REAL(wp), DIMENSION(1) :: zz = 1.
[1738]	2114	!!----------------------------------------------------------------------
[9019]	2115	!
[7646]	2116	CALL iom_set_domain_attr('scalarpoint', ni_glo=jpnij, nj_glo=1, ibegin=narea-1, jbegin=0, ni=1, nj=1)
[5426]	2117	CALL iom_set_domain_attr('scalarpoint', data_dim=2, data_ibegin = 1, data_ni = 1, data_jbegin = 1, data_nj = 1)
[9019]	2118	!
	2119	zz = REAL( narea, wp )
[5426]	2120	CALL iom_set_domain_attr('scalarpoint', lonvalue=zz, latvalue=zz)
[9019]	2121	!
[1738]	2122	END SUBROUTINE set_scalar
	2123
	2124
[1725]	2125	SUBROUTINE set_xmlatt
	2126	!!----------------------------------------------------------------------
[4148]	2127	!! * ROUTINE set_xmlatt *
[1725]	2128	!!
	2129	!! ** Purpose : automatic definitions of some of the xml attributs...
	2130	!!
	2131	!!----------------------------------------------------------------------
	2132	CHARACTER(len=1),DIMENSION( 3) :: clgrd ! suffix name
[4148]	2133	CHARACTER(len=256) :: clsuff ! suffix name
[1725]	2134	CHARACTER(len=1) :: cl1 ! 1 character
[5003]	2135	CHARACTER(len=2) :: cl2 ! 2 characters
	2136	CHARACTER(len=3) :: cl3 ! 3 characters
[4148]	2137	INTEGER :: ji, jg ! loop counters
[1725]	2138	INTEGER :: ix, iy ! i-,j- index
	2139	REAL(wp) ,DIMENSION(11) :: zlontao ! longitudes of tao moorings
	2140	REAL(wp) ,DIMENSION( 7) :: zlattao ! latitudes of tao moorings
	2141	REAL(wp) ,DIMENSION( 4) :: zlonrama ! longitudes of rama moorings
	2142	REAL(wp) ,DIMENSION(11) :: zlatrama ! latitudes of rama moorings
	2143	REAL(wp) ,DIMENSION( 3) :: zlonpira ! longitudes of pirata moorings
	2144	REAL(wp) ,DIMENSION( 9) :: zlatpira ! latitudes of pirata moorings
[7646]	2145	TYPE(xios_duration) :: f_op, f_of
[1725]	2146	!!----------------------------------------------------------------------
	2147	!
	2148	! frequency of the call of iom_put (attribut: freq_op)
[9019]	2149	f_op%timestep = 1 ; f_of%timestep = 0 ; CALL iom_set_field_attr('field_definition', freq_op=f_op, freq_offset=f_of)
	2150	f_op%timestep = 2 ; f_of%timestep = 0 ; CALL iom_set_field_attr('trendT_even' , freq_op=f_op, freq_offset=f_of)
	2151	f_op%timestep = 2 ; f_of%timestep = -1 ; CALL iom_set_field_attr('trendT_odd' , freq_op=f_op, freq_offset=f_of)
	2152	f_op%timestep = nn_fsbc ; f_of%timestep = 0 ; CALL iom_set_field_attr('SBC' , freq_op=f_op, freq_offset=f_of)
	2153	f_op%timestep = nn_fsbc ; f_of%timestep = 0 ; CALL iom_set_field_attr('SBC_scalar' , freq_op=f_op, freq_offset=f_of)
[12377]	2154	f_op%timestep = nn_fsbc ; f_of%timestep = 0 ; CALL iom_set_field_attr('ABL' , freq_op=f_op, freq_offset=f_of)
[7646]	2155
[1725]	2156	! output file names (attribut: name)
[4148]	2157	DO ji = 1, 9
	2158	WRITE(cl1,'(i1)') ji
	2159	CALL iom_update_file_name('file'//cl1)
[1725]	2160	END DO
[4148]	2161	DO ji = 1, 99
	2162	WRITE(cl2,'(i2.2)') ji
	2163	CALL iom_update_file_name('file'//cl2)
	2164	END DO
[5003]	2165	DO ji = 1, 999
	2166	WRITE(cl3,'(i3.3)') ji
	2167	CALL iom_update_file_name('file'//cl3)
	2168	END DO
[1725]	2169
	2170	! Zooms...
	2171	clgrd = (/ 'T', 'U', 'W' /)
	2172	DO jg = 1, SIZE(clgrd) ! grid type
	2173	cl1 = clgrd(jg)
	2174	! Equatorial section (attributs: jbegin, ni, name_suffix)
	2175	CALL dom_ngb( 0., 0., ix, iy, cl1 )
[9930]	2176	CALL iom_set_zoom_domain_attr('Eq'//cl1, ibegin=0, jbegin=iy-1, ni=jpiglo, nj=1 )
[4148]	2177	CALL iom_get_file_attr ('Eq'//cl1, name_suffix = clsuff )
	2178	CALL iom_set_file_attr ('Eq'//cl1, name_suffix = TRIM(clsuff)//'_Eq')
	2179	CALL iom_update_file_name('Eq'//cl1)
[1725]	2180	END DO
	2181	! TAO moorings (attributs: ibegin, jbegin, name_suffix)
	2182	zlontao = (/ 137.0, 147.0, 156.0, 165.0, -180.0, -170.0, -155.0, -140.0, -125.0, -110.0, -95.0 /)
	2183	zlattao = (/ -8.0, -5.0, -2.0, 0.0, 2.0, 5.0, 8.0 /)
	2184	CALL set_mooring( zlontao, zlattao )
	2185	! RAMA moorings (attributs: ibegin, jbegin, name_suffix)
	2186	zlonrama = (/ 55.0, 67.0, 80.5, 90.0 /)
	2187	zlatrama = (/ -16.0, -12.0, -8.0, -4.0, -1.5, 0.0, 1.5, 4.0, 8.0, 12.0, 15.0 /)
	2188	CALL set_mooring( zlonrama, zlatrama )
	2189	! PIRATA moorings (attributs: ibegin, jbegin, name_suffix)
	2190	zlonpira = (/ -38.0, -23.0, -10.0 /)
	2191	zlatpira = (/ -19.0, -14.0, -8.0, 0.0, 4.0, 8.0, 12.0, 15.0, 20.0 /)
	2192	CALL set_mooring( zlonpira, zlatpira )
[9019]	2193	!
[1725]	2194	END SUBROUTINE set_xmlatt
	2195
	2196
[9019]	2197	SUBROUTINE set_mooring( plon, plat )
[1725]	2198	!!----------------------------------------------------------------------
[4148]	2199	!! * ROUTINE set_mooring *
[1725]	2200	!!
	2201	!! ** Purpose : automatic definitions of moorings xml attributs...
	2202	!!
	2203	!!----------------------------------------------------------------------
[9019]	2204	REAL(wp), DIMENSION(:), INTENT(in) :: plon, plat ! longitudes/latitudes oft the mooring
[1725]	2205	!
	2206	!!$ CHARACTER(len=1),DIMENSION(4) :: clgrd = (/ 'T', 'U', 'V', 'W' /) ! suffix name
	2207	CHARACTER(len=1),DIMENSION(1) :: clgrd = (/ 'T' /) ! suffix name
[4148]	2208	CHARACTER(len=256) :: clname ! file name
	2209	CHARACTER(len=256) :: clsuff ! suffix name
[1725]	2210	CHARACTER(len=1) :: cl1 ! 1 character
	2211	CHARACTER(len=6) :: clon,clat ! name of longitude, latitude
	2212	INTEGER :: ji, jj, jg ! loop counters
	2213	INTEGER :: ix, iy ! i-,j- index
	2214	REAL(wp) :: zlon, zlat
	2215	!!----------------------------------------------------------------------
	2216	DO jg = 1, SIZE(clgrd)
	2217	cl1 = clgrd(jg)
	2218	DO ji = 1, SIZE(plon)
	2219	DO jj = 1, SIZE(plat)
	2220	zlon = plon(ji)
	2221	zlat = plat(jj)
	2222	! modifications for RAMA moorings
	2223	IF( zlon == 67. .AND. zlat == 15. ) zlon = 65.
	2224	IF( zlon == 90. .AND. zlat <= -4. ) zlon = 95.
	2225	IF( zlon == 95. .AND. zlat == -4. ) zlat = -5.
	2226	! modifications for PIRATA moorings
	2227	IF( zlon == -38. .AND. zlat == -19. ) zlon = -34.
	2228	IF( zlon == -38. .AND. zlat == -14. ) zlon = -32.
	2229	IF( zlon == -38. .AND. zlat == -8. ) zlon = -30.
	2230	IF( zlon == -38. .AND. zlat == 0. ) zlon = -35.
	2231	IF( zlon == -23. .AND. zlat == 20. ) zlat = 21.
	2232	IF( zlon == -10. .AND. zlat == -14. ) zlat = -10.
	2233	IF( zlon == -10. .AND. zlat == -8. ) zlat = -6.
	2234	IF( zlon == -10. .AND. zlat == 4. ) THEN ; zlon = 0. ; zlat = 0. ; ENDIF
	2235	CALL dom_ngb( zlon, zlat, ix, iy, cl1 )
	2236	IF( zlon >= 0. ) THEN
	2237	IF( zlon == REAL(NINT(zlon), wp) ) THEN ; WRITE(clon, '(i3, a)') NINT( zlon), 'e'
	2238	ELSE ; WRITE(clon, '(f5.1,a)') zlon , 'e'
	2239	ENDIF
	2240	ELSE
	2241	IF( zlon == REAL(NINT(zlon), wp) ) THEN ; WRITE(clon, '(i3, a)') NINT(-zlon), 'w'
	2242	ELSE ; WRITE(clon, '(f5.1,a)') -zlon , 'w'
	2243	ENDIF
	2244	ENDIF
	2245	IF( zlat >= 0. ) THEN
	2246	IF( zlat == REAL(NINT(zlat), wp) ) THEN ; WRITE(clat, '(i2, a)') NINT( zlat), 'n'
	2247	ELSE ; WRITE(clat, '(f4.1,a)') zlat , 'n'
	2248	ENDIF
	2249	ELSE
	2250	IF( zlat == REAL(NINT(zlat), wp) ) THEN ; WRITE(clat, '(i2, a)') NINT(-zlat), 's'
	2251	ELSE ; WRITE(clat, '(f4.1,a)') -zlat , 's'
	2252	ENDIF
	2253	ENDIF
	2254	clname = TRIM(ADJUSTL(clat))//TRIM(ADJUSTL(clon))
[9930]	2255	CALL iom_set_zoom_domain_attr(TRIM(clname)//cl1, ibegin= ix-1, jbegin= iy-1, ni=1, nj=1)
[7646]	2256
[4148]	2257	CALL iom_get_file_attr (TRIM(clname)//cl1, name_suffix = clsuff )
	2258	CALL iom_set_file_attr (TRIM(clname)//cl1, name_suffix = TRIM(clsuff)//'_'//TRIM(clname))
	2259	CALL iom_update_file_name(TRIM(clname)//cl1)
[1725]	2260	END DO
	2261	END DO
	2262	END DO
	2263
	2264	END SUBROUTINE set_mooring
	2265
[4148]	2266
	2267	SUBROUTINE iom_update_file_name( cdid )
	2268	!!----------------------------------------------------------------------
	2269	!! * ROUTINE iom_update_file_name *
	2270	!!
	2271	!! ** Purpose :
	2272	!!
	2273	!!----------------------------------------------------------------------
	2274	CHARACTER(LEN=*) , INTENT(in) :: cdid
	2275	!
	2276	CHARACTER(LEN=256) :: clname
	2277	CHARACTER(LEN=20) :: clfreq
	2278	CHARACTER(LEN=20) :: cldate
	2279	INTEGER :: idx
	2280	INTEGER :: jn
	2281	INTEGER :: itrlen
	2282	INTEGER :: iyear, imonth, iday, isec
	2283	REAL(wp) :: zsec
	2284	LOGICAL :: llexist
[7646]	2285	TYPE(xios_duration) :: output_freq
[4148]	2286	!!----------------------------------------------------------------------
[9019]	2287	!
	2288	DO jn = 1, 2
	2289	!
[7646]	2290	output_freq = xios_duration(0,0,0,0,0,0)
	2291	IF( jn == 1 ) CALL iom_get_file_attr( cdid, name = clname, output_freq = output_freq )
[4148]	2292	IF( jn == 2 ) CALL iom_get_file_attr( cdid, name_suffix = clname )
[9019]	2293	!
[4148]	2294	IF ( TRIM(clname) /= '' ) THEN
[9019]	2295	!
[4148]	2296	idx = INDEX(clname,'@expname@') + INDEX(clname,'@EXPNAME@')
	2297	DO WHILE ( idx /= 0 )
	2298	clname = clname(1:idx-1)//TRIM(cexper)//clname(idx+9:LEN_TRIM(clname))
	2299	idx = INDEX(clname,'@expname@') + INDEX(clname,'@EXPNAME@')
	2300	END DO
[9019]	2301	!
[4148]	2302	idx = INDEX(clname,'@freq@') + INDEX(clname,'@FREQ@')
	2303	DO WHILE ( idx /= 0 )
[7646]	2304	IF ( output_freq%timestep /= 0) THEN
	2305	WRITE(clfreq,'(I18,A2)')INT(output_freq%timestep),'ts'
	2306	itrlen = LEN_TRIM(ADJUSTL(clfreq))
[7764]	2307	ELSE IF ( output_freq%second /= 0 ) THEN
	2308	WRITE(clfreq,'(I19,A1)')INT(output_freq%second),'s'
	2309	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2310	ELSE IF ( output_freq%minute /= 0 ) THEN
[7768]	2311	WRITE(clfreq,'(I18,A2)')INT(output_freq%minute),'mi'
[7764]	2312	itrlen = LEN_TRIM(ADJUSTL(clfreq))
[7646]	2313	ELSE IF ( output_freq%hour /= 0 ) THEN
	2314	WRITE(clfreq,'(I19,A1)')INT(output_freq%hour),'h'
	2315	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2316	ELSE IF ( output_freq%day /= 0 ) THEN
	2317	WRITE(clfreq,'(I19,A1)')INT(output_freq%day),'d'
	2318	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2319	ELSE IF ( output_freq%month /= 0 ) THEN
	2320	WRITE(clfreq,'(I19,A1)')INT(output_freq%month),'m'
	2321	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2322	ELSE IF ( output_freq%year /= 0 ) THEN
	2323	WRITE(clfreq,'(I19,A1)')INT(output_freq%year),'y'
	2324	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2325	ELSE
[4148]	2326	CALL ctl_stop('error in the name of file id '//TRIM(cdid), &
	2327	& ' attribute output_freq is undefined -> cannot replace @freq@ in '//TRIM(clname) )
[7646]	2328	ENDIF
	2329	clname = clname(1:idx-1)//TRIM(ADJUSTL(clfreq))//clname(idx+6:LEN_TRIM(clname))
	2330	idx = INDEX(clname,'@freq@') + INDEX(clname,'@FREQ@')
[4148]	2331	END DO
[9019]	2332	!
[4148]	2333	idx = INDEX(clname,'@startdate@') + INDEX(clname,'@STARTDATE@')
	2334	DO WHILE ( idx /= 0 )
[12489]	2335	cldate = iom_sdate( fjulday - rn_Dt / rday )
[4148]	2336	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+11:LEN_TRIM(clname))
	2337	idx = INDEX(clname,'@startdate@') + INDEX(clname,'@STARTDATE@')
	2338	END DO
[9019]	2339	!
[4148]	2340	idx = INDEX(clname,'@startdatefull@') + INDEX(clname,'@STARTDATEFULL@')
	2341	DO WHILE ( idx /= 0 )
[12489]	2342	cldate = iom_sdate( fjulday - rn_Dt / rday, ldfull = .TRUE. )
[4148]	2343	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+15:LEN_TRIM(clname))
	2344	idx = INDEX(clname,'@startdatefull@') + INDEX(clname,'@STARTDATEFULL@')
	2345	END DO
[9019]	2346	!
[4148]	2347	idx = INDEX(clname,'@enddate@') + INDEX(clname,'@ENDDATE@')
	2348	DO WHILE ( idx /= 0 )
[12489]	2349	cldate = iom_sdate( fjulday + rn_Dt / rday * REAL( nitend - nit000, wp ), ld24 = .TRUE. )
[4148]	2350	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+9:LEN_TRIM(clname))
	2351	idx = INDEX(clname,'@enddate@') + INDEX(clname,'@ENDDATE@')
	2352	END DO
[9019]	2353	!
[4148]	2354	idx = INDEX(clname,'@enddatefull@') + INDEX(clname,'@ENDDATEFULL@')
	2355	DO WHILE ( idx /= 0 )
[12489]	2356	cldate = iom_sdate( fjulday + rn_Dt / rday * REAL( nitend - nit000, wp ), ld24 = .TRUE., ldfull = .TRUE. )
[4148]	2357	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+13:LEN_TRIM(clname))
	2358	idx = INDEX(clname,'@enddatefull@') + INDEX(clname,'@ENDDATEFULL@')
	2359	END DO
[9019]	2360	!
[12377]	2361	IF( jn == 1 .AND. TRIM(Agrif_CFixed()) /= '0' ) clname = TRIM(Agrif_CFixed())//"_"//TRIM(clname)
[4148]	2362	IF( jn == 1 ) CALL iom_set_file_attr( cdid, name = clname )
	2363	IF( jn == 2 ) CALL iom_set_file_attr( cdid, name_suffix = clname )
[9019]	2364	!
[4148]	2365	ENDIF
[9019]	2366	!
[4148]	2367	END DO
[9019]	2368	!
[4148]	2369	END SUBROUTINE iom_update_file_name
	2370
	2371
	2372	FUNCTION iom_sdate( pjday, ld24, ldfull )
	2373	!!----------------------------------------------------------------------
	2374	!! * ROUTINE iom_sdate *
	2375	!!
	2376	!! ** Purpose : send back the date corresponding to the given julian day
	2377	!!----------------------------------------------------------------------
[9019]	2378	REAL(wp), INTENT(in ) :: pjday ! julian day
	2379	LOGICAL , INTENT(in ), OPTIONAL :: ld24 ! true to force 24:00 instead of 00:00
	2380	LOGICAL , INTENT(in ), OPTIONAL :: ldfull ! true to get the compleate date: yyyymmdd_hh:mm:ss
[4148]	2381	!
	2382	CHARACTER(LEN=20) :: iom_sdate
	2383	CHARACTER(LEN=50) :: clfmt ! format used to write the date
	2384	INTEGER :: iyear, imonth, iday, ihour, iminute, isec
	2385	REAL(wp) :: zsec
	2386	LOGICAL :: ll24, llfull
[9019]	2387	!!----------------------------------------------------------------------
[4148]	2388	!
	2389	IF( PRESENT(ld24) ) THEN ; ll24 = ld24
	2390	ELSE ; ll24 = .FALSE.
	2391	ENDIF
[9019]	2392	!
[4148]	2393	IF( PRESENT(ldfull) ) THEN ; llfull = ldfull
	2394	ELSE ; llfull = .FALSE.
	2395	ENDIF
[9019]	2396	!
[4148]	2397	CALL ju2ymds( pjday, iyear, imonth, iday, zsec )
	2398	isec = NINT(zsec)
[9019]	2399	!
[4148]	2400	IF ( ll24 .AND. isec == 0 ) THEN ! 00:00 of the next day -> move to 24:00 of the current day
	2401	CALL ju2ymds( pjday - 1., iyear, imonth, iday, zsec )
	2402	isec = 86400
	2403	ENDIF
[9019]	2404	!
[4148]	2405	IF( iyear < 10000 ) THEN ; clfmt = "i4.4,2i2.2" ! format used to write the date
	2406	ELSE ; WRITE(clfmt, "('i',i1,',2i2.2')") INT(LOG10(REAL(iyear,wp))) + 1
	2407	ENDIF
[9019]	2408	!
[5656]	2409	!$AGRIF_DO_NOT_TREAT
[9019]	2410	! needed in the conv
[4148]	2411	IF( llfull ) THEN
	2412	clfmt = TRIM(clfmt)//",'_',i2.2,':',i2.2,':',i2.2"
	2413	ihour = isec / 3600
	2414	isec = MOD(isec, 3600)
	2415	iminute = isec / 60
	2416	isec = MOD(isec, 60)
	2417	WRITE(iom_sdate, '('//TRIM(clfmt)//')') iyear, imonth, iday, ihour, iminute, isec ! date of the end of run
	2418	ELSE
	2419	WRITE(iom_sdate, '('//TRIM(clfmt)//')') iyear, imonth, iday ! date of the end of run
	2420	ENDIF
[5656]	2421	!$AGRIF_END_DO_NOT_TREAT
[9019]	2422	!
[4148]	2423	END FUNCTION iom_sdate
	2424
[1359]	2425	#else
[9019]	2426	!!----------------------------------------------------------------------
	2427	!! NOT 'key_iomput' a few dummy routines
	2428	!!----------------------------------------------------------------------
[4152]	2429	SUBROUTINE iom_setkt( kt, cdname )
	2430	INTEGER , INTENT(in):: kt
	2431	CHARACTER(LEN=*), INTENT(in) :: cdname
	2432	IF( .FALSE. ) WRITE(numout,*) kt, cdname ! useless test to avoid compilation warnings
[1359]	2433	END SUBROUTINE iom_setkt
	2434
[4152]	2435	SUBROUTINE iom_context_finalize( cdname )
	2436	CHARACTER(LEN=*), INTENT(in) :: cdname
	2437	IF( .FALSE. ) WRITE(numout,*) cdname ! useless test to avoid compilation warnings
	2438	END SUBROUTINE iom_context_finalize
	2439
[12377]	2440	SUBROUTINE iom_update_file_name( cdid )
	2441	CHARACTER(LEN=*), INTENT(in) :: cdid
	2442	IF( .FALSE. ) WRITE(numout,*) cdid ! useless test to avoid compilation warnings
	2443	END SUBROUTINE iom_update_file_name
	2444
[1359]	2445	#endif
[4689]	2446
	2447	LOGICAL FUNCTION iom_use( cdname )
	2448	CHARACTER(LEN=*), INTENT(in) :: cdname
	2449	#if defined key_iomput
	2450	iom_use = xios_field_is_active( cdname )
	2451	#else
	2452	iom_use = .FALSE.
	2453	#endif
	2454	END FUNCTION iom_use
[11536]	2455
	2456	SUBROUTINE iom_miss_val( cdname, pmiss_val )
	2457	CHARACTER(LEN=*), INTENT(in ) :: cdname
	2458	REAL(wp) , INTENT(out) :: pmiss_val
	2459	#if defined key_iomput
	2460	! get missing value
	2461	CALL xios_get_field_attr( cdname, default_value = pmiss_val )
	2462	#else
	2463	IF( .FALSE. ) WRITE(numout,*) cdname, pmiss_val ! useless test to avoid compilation warnings
[12377]	2464	IF( .FALSE. ) pmiss_val = 0._wp ! useless assignment to avoid compilation warnings
[11536]	2465	#endif
	2466	END SUBROUTINE iom_miss_val
	2467
[544]	2468	!!======================================================================
	2469	END MODULE iom

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