[3443] | 1 | MODULE p4zsms |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE p4zsms *** |
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| 4 | !! TOP : PISCES Source Minus Sink manager |
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| 5 | !!====================================================================== |
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| 6 | !! History : 1.0 ! 2004-03 (O. Aumont) Original code |
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| 7 | !! 2.0 ! 2007-12 (C. Ethe, G. Madec) F90 |
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| 8 | !!---------------------------------------------------------------------- |
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[9169] | 9 | !! p4z_sms : Time loop of passive tracers sms |
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[3443] | 10 | !!---------------------------------------------------------------------- |
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[9169] | 11 | USE oce_trc ! shared variables between ocean and passive tracers |
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| 12 | USE trc ! passive tracers common variables |
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| 13 | USE trcdta ! |
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| 14 | USE sms_pisces ! PISCES Source Minus Sink variables |
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| 15 | USE p4zbio ! Biological model |
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| 16 | USE p4zche ! Chemical model |
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| 17 | USE p4zlys ! Calcite saturation |
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| 18 | USE p4zflx ! Gas exchange |
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[12377] | 19 | USE p4zbc ! External source of nutrients |
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[9169] | 20 | USE p4zsed ! Sedimentation |
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| 21 | USE p4zint ! time interpolation |
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| 22 | USE p4zrem ! remineralisation |
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| 23 | USE iom ! I/O manager |
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| 24 | USE trd_oce ! Ocean trends variables |
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| 25 | USE trdtrc ! TOP trends variables |
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| 26 | USE sedmodel ! Sediment model |
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[13286] | 27 | USE prtctl ! print control for debugging |
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[3443] | 28 | |
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| 29 | IMPLICIT NONE |
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| 30 | PRIVATE |
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| 31 | |
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[4990] | 32 | PUBLIC p4z_sms_init ! called in p4zsms.F90 |
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| 33 | PUBLIC p4z_sms ! called in p4zsms.F90 |
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[3443] | 34 | |
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[9169] | 35 | INTEGER :: numco2, numnut, numnit ! logical unit for co2 budget |
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| 36 | REAL(wp) :: alkbudget, no3budget, silbudget, ferbudget, po4budget |
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[12276] | 37 | REAL(wp) :: xfact, xfact1, xfact2, xfact3 |
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[3443] | 38 | |
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[9169] | 39 | REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xnegtr ! Array used to indicate negative tracer values |
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[5385] | 40 | |
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[12377] | 41 | !! * Substitutions |
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| 42 | # include "do_loop_substitute.h90" |
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[13237] | 43 | # include "domzgr_substitute.h90" |
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[3443] | 44 | !!---------------------------------------------------------------------- |
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[10067] | 45 | !! NEMO/TOP 4.0 , NEMO Consortium (2018) |
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[10069] | 46 | !! $Id$ |
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[10068] | 47 | !! Software governed by the CeCILL license (see ./LICENSE) |
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[3443] | 48 | !!---------------------------------------------------------------------- |
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| 49 | CONTAINS |
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| 50 | |
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[12377] | 51 | SUBROUTINE p4z_sms( kt, Kbb, Kmm, Krhs ) |
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[3443] | 52 | !!--------------------------------------------------------------------- |
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| 53 | !! *** ROUTINE p4z_sms *** |
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| 54 | !! |
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| 55 | !! ** Purpose : Managment of the call to Biological sources and sinks |
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| 56 | !! routines of PISCES bio-model |
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| 57 | !! |
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| 58 | !! ** Method : - at each new day ... |
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| 59 | !! - several calls of bio and sed ??? |
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| 60 | !! - ... |
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| 61 | !!--------------------------------------------------------------------- |
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| 62 | ! |
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[12377] | 63 | INTEGER, INTENT( in ) :: kt ! ocean time-step index |
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| 64 | INTEGER, INTENT( in ) :: Kbb, Kmm, Krhs ! time level index |
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[3443] | 65 | !! |
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[5385] | 66 | INTEGER :: ji, jj, jk, jnt, jn, jl |
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| 67 | REAL(wp) :: ztra |
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[3443] | 68 | CHARACTER (len=25) :: charout |
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[12276] | 69 | REAL(wp), ALLOCATABLE, DIMENSION(:,: ) :: zw2d |
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| 70 | REAL(wp), ALLOCATABLE, DIMENSION(:,:,: ) :: zw3d |
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[13553] | 71 | REAL(wp), DIMENSION(jpi,jpj,jpk,jp_pisces) :: ztrbbio |
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[12276] | 72 | |
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[3443] | 73 | !!--------------------------------------------------------------------- |
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| 74 | ! |
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[9124] | 75 | IF( ln_timing ) CALL timing_start('p4z_sms') |
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[3443] | 76 | ! |
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[4152] | 77 | IF( kt == nittrc000 ) THEN |
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| 78 | ! |
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[5385] | 79 | ALLOCATE( xnegtr(jpi,jpj,jpk) ) |
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| 80 | ! |
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[9559] | 81 | IF( .NOT. ln_rsttr ) THEN |
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[12377] | 82 | CALL p4z_che( Kbb, Kmm ) ! initialize the chemical constants |
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| 83 | CALL ahini_for_at( hi, Kbb ) ! set PH at kt=nit000 |
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[10382] | 84 | t_oce_co2_flx_cum = 0._wp |
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[9559] | 85 | ELSE |
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[12377] | 86 | CALL p4z_rst( nittrc000, Kbb, Kmm, 'READ' ) !* read or initialize all required fields |
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[4152] | 87 | ENDIF |
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| 88 | ! |
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| 89 | ENDIF |
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| 90 | ! |
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[12377] | 91 | IF( ln_pisdmp .AND. MOD( kt - 1, nn_pisdmp ) == 0 ) CALL p4z_dmp( kt, Kbb, Kmm ) ! Relaxation of some tracers |
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[3496] | 92 | ! |
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[12489] | 93 | rfact = rDt_trc |
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[5385] | 94 | ! |
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[12377] | 95 | IF( ( ln_top_euler .AND. kt == nittrc000 ) .OR. ( .NOT.ln_top_euler .AND. kt <= nittrc000 + 1 ) ) THEN |
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[5385] | 96 | rfactr = 1. / rfact |
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[7646] | 97 | rfact2 = rfact / REAL( nrdttrc, wp ) |
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[5385] | 98 | rfact2r = 1. / rfact2 |
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| 99 | xstep = rfact2 / rday ! Time step duration for biology |
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[12276] | 100 | xfact = 1.e+3 * rfact2r |
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[5385] | 101 | IF(lwp) WRITE(numout,*) |
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[12489] | 102 | IF(lwp) WRITE(numout,*) ' Passive Tracer time step rfact = ', rfact, ' rn_Dt = ', rn_Dt |
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[5385] | 103 | IF(lwp) write(numout,*) ' PISCES Biology time step rfact2 = ', rfact2 |
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| 104 | IF(lwp) WRITE(numout,*) |
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| 105 | ENDIF |
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| 106 | |
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[12489] | 107 | IF( l_1st_euler .OR. ln_top_euler ) THEN |
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[5385] | 108 | DO jn = jp_pcs0, jp_pcs1 ! SMS on tracer without Asselin time-filter |
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[12377] | 109 | tr(:,:,:,jn,Kbb) = tr(:,:,:,jn,Kmm) |
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[5385] | 110 | END DO |
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| 111 | ENDIF |
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[13553] | 112 | |
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| 113 | DO jn = jp_pcs0, jp_pcs1 ! Store the tracer concentrations before entering PISCES |
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| 114 | ztrbbio(:,:,:,jn) = tr(:,:,:,jn,Kbb) |
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| 115 | END DO |
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| 116 | |
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[5385] | 117 | ! |
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[12377] | 118 | IF( ll_bc ) CALL p4z_bc( kt, Kbb, Kmm, Krhs ) ! external sources of nutrients |
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[10222] | 119 | ! |
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| 120 | #if ! defined key_sed_off |
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[12377] | 121 | CALL p4z_che( Kbb, Kmm ) ! computation of chemical constants |
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| 122 | CALL p4z_int( kt, Kbb, Kmm ) ! computation of various rates for biogeochemistry |
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[9559] | 123 | ! |
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[3443] | 124 | DO jnt = 1, nrdttrc ! Potential time splitting if requested |
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| 125 | ! |
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[12377] | 126 | CALL p4z_bio( kt, jnt, Kbb, Kmm, Krhs ) ! Biology |
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| 127 | CALL p4z_lys( kt, jnt, Kbb, Krhs ) ! Compute CaCO3 saturation |
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| 128 | CALL p4z_sed( kt, jnt, Kbb, Kmm, Krhs ) ! Surface and Bottom boundary conditions |
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| 129 | CALL p4z_flx( kt, jnt, Kbb, Kmm, Krhs ) ! Compute surface fluxes |
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[3443] | 130 | ! |
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[7753] | 131 | xnegtr(:,:,:) = 1.e0 |
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[3443] | 132 | DO jn = jp_pcs0, jp_pcs1 |
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[13295] | 133 | DO_3D( 1, 1, 1, 1, 1, jpk ) |
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[12377] | 134 | IF( ( tr(ji,jj,jk,jn,Kbb) + tr(ji,jj,jk,jn,Krhs) ) < 0.e0 ) THEN |
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| 135 | ztra = ABS( tr(ji,jj,jk,jn,Kbb) ) / ( ABS( tr(ji,jj,jk,jn,Krhs) ) + rtrn ) |
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| 136 | xnegtr(ji,jj,jk) = MIN( xnegtr(ji,jj,jk), ztra ) |
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| 137 | ENDIF |
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| 138 | END_3D |
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[5385] | 139 | END DO |
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| 140 | ! ! where at least 1 tracer concentration becomes negative |
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| 141 | ! ! |
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| 142 | DO jn = jp_pcs0, jp_pcs1 |
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[12377] | 143 | tr(:,:,:,jn,Kbb) = tr(:,:,:,jn,Kbb) + xnegtr(:,:,:) * tr(:,:,:,jn,Krhs) |
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[5385] | 144 | END DO |
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| 145 | ! |
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[12276] | 146 | IF( iom_use( 'INTdtAlk' ) .OR. iom_use( 'INTdtDIC' ) .OR. iom_use( 'INTdtFer' ) .OR. & |
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| 147 | & iom_use( 'INTdtDIN' ) .OR. iom_use( 'INTdtDIP' ) .OR. iom_use( 'INTdtSil' ) ) THEN |
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| 148 | ! |
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| 149 | ALLOCATE( zw3d(jpi,jpj,jpk), zw2d(jpi,jpj) ) |
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| 150 | zw3d(:,:,jpk) = 0. |
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| 151 | DO jk = 1, jpkm1 |
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[12377] | 152 | zw3d(:,:,jk) = xnegtr(:,:,jk) * xfact * e3t(:,:,jk,Kmm) * tmask(:,:,jk) |
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[12276] | 153 | ENDDO |
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| 154 | ! |
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| 155 | zw2d(:,:) = 0. |
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| 156 | DO jk = 1, jpkm1 |
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[12377] | 157 | zw2d(:,:) = zw2d(:,:) + zw3d(:,:,jk) * tr(:,:,jk,jptal,Krhs) |
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[12276] | 158 | ENDDO |
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| 159 | CALL iom_put( 'INTdtAlk', zw2d ) |
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| 160 | ! |
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| 161 | zw2d(:,:) = 0. |
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| 162 | DO jk = 1, jpkm1 |
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[12377] | 163 | zw2d(:,:) = zw2d(:,:) + zw3d(:,:,jk) * tr(:,:,jk,jpdic,Krhs) |
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[12276] | 164 | ENDDO |
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| 165 | CALL iom_put( 'INTdtDIC', zw2d ) |
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| 166 | ! |
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| 167 | zw2d(:,:) = 0. |
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| 168 | DO jk = 1, jpkm1 |
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[12377] | 169 | zw2d(:,:) = zw2d(:,:) + zw3d(:,:,jk) * rno3 * ( tr(:,:,jk,jpno3,Krhs) + tr(:,:,jk,jpnh4,Krhs) ) |
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[12276] | 170 | ENDDO |
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| 171 | CALL iom_put( 'INTdtDIN', zw2d ) |
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| 172 | ! |
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| 173 | zw2d(:,:) = 0. |
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| 174 | DO jk = 1, jpkm1 |
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[12377] | 175 | zw2d(:,:) = zw2d(:,:) + zw3d(:,:,jk) * po4r * tr(:,:,jk,jppo4,Krhs) |
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[12276] | 176 | ENDDO |
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| 177 | CALL iom_put( 'INTdtDIP', zw2d ) |
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| 178 | ! |
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| 179 | zw2d(:,:) = 0. |
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| 180 | DO jk = 1, jpkm1 |
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[12377] | 181 | zw2d(:,:) = zw2d(:,:) + zw3d(:,:,jk) * tr(:,:,jk,jpfer,Krhs) |
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[12276] | 182 | ENDDO |
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| 183 | CALL iom_put( 'INTdtFer', zw2d ) |
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| 184 | ! |
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| 185 | zw2d(:,:) = 0. |
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| 186 | DO jk = 1, jpkm1 |
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[12377] | 187 | zw2d(:,:) = zw2d(:,:) + zw3d(:,:,jk) * tr(:,:,jk,jpsil,Krhs) |
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[12276] | 188 | ENDDO |
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| 189 | CALL iom_put( 'INTdtSil', zw2d ) |
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| 190 | ! |
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| 191 | DEALLOCATE( zw3d, zw2d ) |
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| 192 | ENDIF |
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| 193 | ! |
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[5385] | 194 | DO jn = jp_pcs0, jp_pcs1 |
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[12377] | 195 | tr(:,:,:,jn,Krhs) = 0._wp |
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[5385] | 196 | END DO |
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[3443] | 197 | ! |
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| 198 | END DO |
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| 199 | ! |
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[10222] | 200 | #endif |
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[5385] | 201 | ! |
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[10222] | 202 | IF( ln_sediment ) THEN |
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[3443] | 203 | ! |
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[12377] | 204 | CALL sed_model( kt, Kbb, Kmm, Krhs ) ! Main program of Sediment model |
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[3443] | 205 | ! |
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| 206 | ENDIF |
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| 207 | ! |
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[13553] | 208 | DO jn = jp_pcs0, jp_pcs1 |
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| 209 | tr(:,:,:,jn,Krhs) = ( tr(:,:,:,jn,Kbb) - ztrbbio(:,:,:,jn) ) * rfactr |
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| 210 | tr(:,:,:,jn,Kbb ) = ztrbbio(:,:,:,jn) |
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| 211 | ztrbbio(:,:,:,jn) = 0._wp |
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| 212 | END DO |
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| 213 | ! |
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| 214 | IF( l_trdtrc ) THEN |
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| 215 | DO jn = jp_pcs0, jp_pcs1 |
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| 216 | CALL trd_trc( tr(:,:,:,jn,Krhs), jn, jptra_sms, kt, Kmm ) ! save trends |
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| 217 | END DO |
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| 218 | END IF |
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| 219 | ! |
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[12377] | 220 | IF( lrst_trc ) CALL p4z_rst( kt, Kbb, Kmm, 'WRITE' ) !* Write PISCES informations in restart file |
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[3443] | 221 | ! |
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[5385] | 222 | |
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[12377] | 223 | IF( lk_iomput .OR. ln_check_mass ) CALL p4z_chk_mass( kt, Kmm ) ! Mass conservation checking |
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[3481] | 224 | |
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[12377] | 225 | IF( lwm .AND. kt == nittrc000 ) CALL FLUSH( numonp ) ! flush output namelist PISCES |
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[3443] | 226 | ! |
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[9124] | 227 | IF( ln_timing ) CALL timing_stop('p4z_sms') |
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[3481] | 228 | ! |
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[3443] | 229 | END SUBROUTINE p4z_sms |
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| 230 | |
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[9124] | 231 | |
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[3443] | 232 | SUBROUTINE p4z_sms_init |
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| 233 | !!---------------------------------------------------------------------- |
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| 234 | !! *** p4z_sms_init *** |
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| 235 | !! |
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| 236 | !! ** Purpose : read PISCES namelist |
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| 237 | !! |
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| 238 | !! ** input : file 'namelist.trc.s' containing the following |
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| 239 | !! namelist: natext, natbio, natsms |
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| 240 | !!---------------------------------------------------------------------- |
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[9124] | 241 | INTEGER :: ios ! Local integer output status for namelist read |
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| 242 | !! |
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[7646] | 243 | NAMELIST/nampisbio/ nrdttrc, wsbio, xkmort, ferat3, wsbio2, wsbio2max, wsbio2scale, & |
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[10416] | 244 | & ldocp, ldocz, lthet, no3rat3, po4rat3 |
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[9124] | 245 | ! |
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[4148] | 246 | NAMELIST/nampisdmp/ ln_pisdmp, nn_pisdmp |
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[3531] | 247 | NAMELIST/nampismass/ ln_check_mass |
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| 248 | !!---------------------------------------------------------------------- |
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[9169] | 249 | ! |
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| 250 | IF(lwp) THEN |
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| 251 | WRITE(numout,*) |
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| 252 | WRITE(numout,*) 'p4z_sms_init : PISCES initialization' |
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| 253 | WRITE(numout,*) '~~~~~~~~~~~~' |
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| 254 | ENDIF |
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[3443] | 255 | |
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[4147] | 256 | READ ( numnatp_ref, nampisbio, IOSTAT = ios, ERR = 901) |
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[11536] | 257 | 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nampisbio in reference namelist' ) |
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[4147] | 258 | READ ( numnatp_cfg, nampisbio, IOSTAT = ios, ERR = 902 ) |
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[11536] | 259 | 902 IF( ios > 0 ) CALL ctl_nam ( ios , 'nampisbio in configuration namelist' ) |
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[9169] | 260 | IF(lwm) WRITE( numonp, nampisbio ) |
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| 261 | ! |
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[3443] | 262 | IF(lwp) THEN ! control print |
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[9169] | 263 | WRITE(numout,*) ' Namelist : nampisbio' |
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| 264 | WRITE(numout,*) ' frequency for the biology nrdttrc =', nrdttrc |
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| 265 | WRITE(numout,*) ' POC sinking speed wsbio =', wsbio |
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| 266 | WRITE(numout,*) ' half saturation constant for mortality xkmort =', xkmort |
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[7646] | 267 | IF( ln_p5z ) THEN |
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[9169] | 268 | WRITE(numout,*) ' N/C in zooplankton no3rat3 =', no3rat3 |
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| 269 | WRITE(numout,*) ' P/C in zooplankton po4rat3 =', po4rat3 |
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[7646] | 270 | ENDIF |
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[9169] | 271 | WRITE(numout,*) ' Fe/C in zooplankton ferat3 =', ferat3 |
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| 272 | WRITE(numout,*) ' Big particles sinking speed wsbio2 =', wsbio2 |
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| 273 | WRITE(numout,*) ' Big particles maximum sinking speed wsbio2max =', wsbio2max |
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| 274 | WRITE(numout,*) ' Big particles sinking speed length scale wsbio2scale =', wsbio2scale |
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[7646] | 275 | IF( ln_ligand ) THEN |
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| 276 | IF( ln_p4z ) THEN |
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[9169] | 277 | WRITE(numout,*) ' Phyto ligand production per unit doc ldocp =', ldocp |
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| 278 | WRITE(numout,*) ' Zoo ligand production per unit doc ldocz =', ldocz |
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| 279 | WRITE(numout,*) ' Proportional loss of ligands due to Fe uptake lthet =', lthet |
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[7646] | 280 | ENDIF |
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| 281 | ENDIF |
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[3443] | 282 | ENDIF |
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| 283 | |
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| 284 | |
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[4147] | 285 | READ ( numnatp_ref, nampisdmp, IOSTAT = ios, ERR = 905) |
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[11536] | 286 | 905 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nampisdmp in reference namelist' ) |
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[4147] | 287 | READ ( numnatp_cfg, nampisdmp, IOSTAT = ios, ERR = 906 ) |
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[11536] | 288 | 906 IF( ios > 0 ) CALL ctl_nam ( ios , 'nampisdmp in configuration namelist' ) |
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[9169] | 289 | IF(lwm) WRITE( numonp, nampisdmp ) |
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| 290 | ! |
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[3443] | 291 | IF(lwp) THEN ! control print |
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| 292 | WRITE(numout,*) |
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[9169] | 293 | WRITE(numout,*) ' Namelist : nampisdmp --- relaxation to GLODAP' |
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| 294 | WRITE(numout,*) ' Relaxation of tracer to glodap mean value ln_pisdmp =', ln_pisdmp |
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| 295 | WRITE(numout,*) ' Frequency of Relaxation nn_pisdmp =', nn_pisdmp |
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[3443] | 296 | ENDIF |
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| 297 | |
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[4147] | 298 | READ ( numnatp_ref, nampismass, IOSTAT = ios, ERR = 907) |
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[11536] | 299 | 907 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nampismass in reference namelist' ) |
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[4147] | 300 | READ ( numnatp_cfg, nampismass, IOSTAT = ios, ERR = 908 ) |
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[11536] | 301 | 908 IF( ios > 0 ) CALL ctl_nam ( ios , 'nampismass in configuration namelist' ) |
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[9169] | 302 | IF(lwm) WRITE( numonp, nampismass ) |
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[4147] | 303 | |
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[3531] | 304 | IF(lwp) THEN ! control print |
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[9169] | 305 | WRITE(numout,*) |
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| 306 | WRITE(numout,*) ' Namelist : nampismass --- mass conservation checking' |
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| 307 | WRITE(numout,*) ' Flag to check mass conservation of NO3/Si/TALK ln_check_mass = ', ln_check_mass |
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[3531] | 308 | ENDIF |
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[9124] | 309 | ! |
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[3443] | 310 | END SUBROUTINE p4z_sms_init |
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| 311 | |
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[9124] | 312 | |
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[12377] | 313 | SUBROUTINE p4z_rst( kt, Kbb, Kmm, cdrw ) |
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[3443] | 314 | !!--------------------------------------------------------------------- |
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| 315 | !! *** ROUTINE p4z_rst *** |
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| 316 | !! |
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| 317 | !! ** Purpose : Read or write variables in restart file: |
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| 318 | !! |
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| 319 | !! WRITE(READ) mode: |
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| 320 | !! kt : number of time step since the begining of the experiment at the |
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| 321 | !! end of the current(previous) run |
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| 322 | !!--------------------------------------------------------------------- |
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| 323 | INTEGER , INTENT(in) :: kt ! ocean time-step |
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[12377] | 324 | INTEGER , INTENT(in) :: Kbb, Kmm ! time level indices |
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[3443] | 325 | CHARACTER(len=*), INTENT(in) :: cdrw ! "READ"/"WRITE" flag |
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[9124] | 326 | !!--------------------------------------------------------------------- |
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[3443] | 327 | ! |
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| 328 | IF( TRIM(cdrw) == 'READ' ) THEN |
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| 329 | ! |
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| 330 | IF(lwp) WRITE(numout,*) |
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| 331 | IF(lwp) WRITE(numout,*) ' p4z_rst : Read specific variables from pisces model ' |
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| 332 | IF(lwp) WRITE(numout,*) ' ~~~~~~~~~~~~~~' |
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| 333 | ! |
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| 334 | IF( iom_varid( numrtr, 'PH', ldstop = .FALSE. ) > 0 ) THEN |
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[13286] | 335 | CALL iom_get( numrtr, jpdom_auto, 'PH' , hi(:,:,:) ) |
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[3443] | 336 | ELSE |
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[12377] | 337 | CALL p4z_che( Kbb, Kmm ) ! initialize the chemical constants |
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| 338 | CALL ahini_for_at( hi, Kbb ) |
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[3443] | 339 | ENDIF |
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[13286] | 340 | CALL iom_get( numrtr, jpdom_auto, 'Silicalim', xksi(:,:) ) |
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[3443] | 341 | IF( iom_varid( numrtr, 'Silicamax', ldstop = .FALSE. ) > 0 ) THEN |
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[13286] | 342 | CALL iom_get( numrtr, jpdom_auto, 'Silicamax' , xksimax(:,:) ) |
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[3443] | 343 | ELSE |
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| 344 | xksimax(:,:) = xksi(:,:) |
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| 345 | ENDIF |
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| 346 | ! |
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[4996] | 347 | IF( iom_varid( numrtr, 'tcflxcum', ldstop = .FALSE. ) > 0 ) THEN ! cumulative total flux of carbon |
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| 348 | CALL iom_get( numrtr, 'tcflxcum' , t_oce_co2_flx_cum ) |
---|
| 349 | ELSE |
---|
| 350 | t_oce_co2_flx_cum = 0._wp |
---|
| 351 | ENDIF |
---|
| 352 | ! |
---|
[7646] | 353 | IF( ln_p5z ) THEN |
---|
| 354 | IF( iom_varid( numrtr, 'sized', ldstop = .FALSE. ) > 0 ) THEN |
---|
[13286] | 355 | CALL iom_get( numrtr, jpdom_auto, 'sizep' , sizep(:,:,:) ) |
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| 356 | CALL iom_get( numrtr, jpdom_auto, 'sizen' , sizen(:,:,:) ) |
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| 357 | CALL iom_get( numrtr, jpdom_auto, 'sized' , sized(:,:,:) ) |
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[7646] | 358 | ELSE |
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| 359 | sizep(:,:,:) = 1. |
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| 360 | sizen(:,:,:) = 1. |
---|
| 361 | sized(:,:,:) = 1. |
---|
| 362 | ENDIF |
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| 363 | ENDIF |
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| 364 | ! |
---|
[3443] | 365 | ELSEIF( TRIM(cdrw) == 'WRITE' ) THEN |
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| 366 | IF( kt == nitrst ) THEN |
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| 367 | IF(lwp) WRITE(numout,*) |
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| 368 | IF(lwp) WRITE(numout,*) 'p4z_rst : write pisces restart file kt =', kt |
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| 369 | IF(lwp) WRITE(numout,*) '~~~~~~~' |
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| 370 | ENDIF |
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| 371 | CALL iom_rstput( kt, nitrst, numrtw, 'PH', hi(:,:,:) ) |
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| 372 | CALL iom_rstput( kt, nitrst, numrtw, 'Silicalim', xksi(:,:) ) |
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| 373 | CALL iom_rstput( kt, nitrst, numrtw, 'Silicamax', xksimax(:,:) ) |
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[4996] | 374 | CALL iom_rstput( kt, nitrst, numrtw, 'tcflxcum', t_oce_co2_flx_cum ) |
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[7646] | 375 | IF( ln_p5z ) THEN |
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[9909] | 376 | CALL iom_rstput( kt, nitrst, numrtw, 'sizep', sizep(:,:,:) ) |
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| 377 | CALL iom_rstput( kt, nitrst, numrtw, 'sizen', sizen(:,:,:) ) |
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[7646] | 378 | CALL iom_rstput( kt, nitrst, numrtw, 'sized', sized(:,:,:) ) |
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| 379 | ENDIF |
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[3443] | 380 | ENDIF |
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| 381 | ! |
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| 382 | END SUBROUTINE p4z_rst |
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| 383 | |
---|
[9124] | 384 | |
---|
[12377] | 385 | SUBROUTINE p4z_dmp( kt, Kbb, Kmm ) |
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[3443] | 386 | !!---------------------------------------------------------------------- |
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| 387 | !! *** p4z_dmp *** |
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| 388 | !! |
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| 389 | !! ** purpose : Relaxation of some tracers |
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| 390 | !!---------------------------------------------------------------------- |
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| 391 | ! |
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[12377] | 392 | INTEGER, INTENT( in ) :: kt ! time step |
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| 393 | INTEGER, INTENT( in ) :: Kbb, Kmm ! time level indices |
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[3443] | 394 | ! |
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| 395 | REAL(wp) :: alkmean = 2426. ! mean value of alkalinity ( Glodap ; for Goyet 2391. ) |
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| 396 | REAL(wp) :: po4mean = 2.165 ! mean value of phosphates |
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| 397 | REAL(wp) :: no3mean = 30.90 ! mean value of nitrate |
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| 398 | REAL(wp) :: silmean = 91.51 ! mean value of silicate |
---|
| 399 | ! |
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[5385] | 400 | REAL(wp) :: zarea, zalksumn, zpo4sumn, zno3sumn, zsilsumn |
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| 401 | REAL(wp) :: zalksumb, zpo4sumb, zno3sumb, zsilsumb |
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[3443] | 402 | !!--------------------------------------------------------------------- |
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| 403 | |
---|
| 404 | IF(lwp) WRITE(numout,*) |
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[3557] | 405 | IF(lwp) WRITE(numout,*) ' p4z_dmp : Restoring of nutrients at time-step kt = ', kt |
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[3443] | 406 | IF(lwp) WRITE(numout,*) |
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| 407 | |
---|
[10222] | 408 | IF( cn_cfg == "ORCA" .OR. cn_cfg == "orca") THEN |
---|
[10213] | 409 | IF( .NOT. lk_c1d ) THEN ! ORCA configuration (not 1D) ! |
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| 410 | ! ! --------------------------- ! |
---|
| 411 | ! set total alkalinity, phosphate, nitrate & silicate |
---|
[10425] | 412 | zarea = 1._wp / glob_sum( 'p4zsms', cvol(:,:,:) ) * 1e6 |
---|
[3443] | 413 | |
---|
[12377] | 414 | zalksumn = glob_sum( 'p4zsms', tr(:,:,:,jptal,Kmm) * cvol(:,:,:) ) * zarea |
---|
| 415 | zpo4sumn = glob_sum( 'p4zsms', tr(:,:,:,jppo4,Kmm) * cvol(:,:,:) ) * zarea * po4r |
---|
| 416 | zno3sumn = glob_sum( 'p4zsms', tr(:,:,:,jpno3,Kmm) * cvol(:,:,:) ) * zarea * rno3 |
---|
| 417 | zsilsumn = glob_sum( 'p4zsms', tr(:,:,:,jpsil,Kmm) * cvol(:,:,:) ) * zarea |
---|
[7753] | 418 | |
---|
[10213] | 419 | IF(lwp) WRITE(numout,*) ' TALKN mean : ', zalksumn |
---|
[12377] | 420 | tr(:,:,:,jptal,Kmm) = tr(:,:,:,jptal,Kmm) * alkmean / zalksumn |
---|
[3443] | 421 | |
---|
[10213] | 422 | IF(lwp) WRITE(numout,*) ' PO4N mean : ', zpo4sumn |
---|
[12377] | 423 | tr(:,:,:,jppo4,Kmm) = tr(:,:,:,jppo4,Kmm) * po4mean / zpo4sumn |
---|
[3443] | 424 | |
---|
[10213] | 425 | IF(lwp) WRITE(numout,*) ' NO3N mean : ', zno3sumn |
---|
[12377] | 426 | tr(:,:,:,jpno3,Kmm) = tr(:,:,:,jpno3,Kmm) * no3mean / zno3sumn |
---|
[3443] | 427 | |
---|
[10213] | 428 | IF(lwp) WRITE(numout,*) ' SiO3N mean : ', zsilsumn |
---|
[12377] | 429 | tr(:,:,:,jpsil,Kmm) = MIN( 400.e-6,tr(:,:,:,jpsil,Kmm) * silmean / zsilsumn ) |
---|
[10213] | 430 | ! |
---|
| 431 | ! |
---|
| 432 | IF( .NOT. ln_top_euler ) THEN |
---|
[12377] | 433 | zalksumb = glob_sum( 'p4zsms', tr(:,:,:,jptal,Kbb) * cvol(:,:,:) ) * zarea |
---|
| 434 | zpo4sumb = glob_sum( 'p4zsms', tr(:,:,:,jppo4,Kbb) * cvol(:,:,:) ) * zarea * po4r |
---|
| 435 | zno3sumb = glob_sum( 'p4zsms', tr(:,:,:,jpno3,Kbb) * cvol(:,:,:) ) * zarea * rno3 |
---|
| 436 | zsilsumb = glob_sum( 'p4zsms', tr(:,:,:,jpsil,Kbb) * cvol(:,:,:) ) * zarea |
---|
[7753] | 437 | |
---|
[10213] | 438 | IF(lwp) WRITE(numout,*) ' ' |
---|
| 439 | IF(lwp) WRITE(numout,*) ' TALKB mean : ', zalksumb |
---|
[12377] | 440 | tr(:,:,:,jptal,Kbb) = tr(:,:,:,jptal,Kbb) * alkmean / zalksumb |
---|
[5385] | 441 | |
---|
[10213] | 442 | IF(lwp) WRITE(numout,*) ' PO4B mean : ', zpo4sumb |
---|
[12377] | 443 | tr(:,:,:,jppo4,Kbb) = tr(:,:,:,jppo4,Kbb) * po4mean / zpo4sumb |
---|
[5385] | 444 | |
---|
[10213] | 445 | IF(lwp) WRITE(numout,*) ' NO3B mean : ', zno3sumb |
---|
[12377] | 446 | tr(:,:,:,jpno3,Kbb) = tr(:,:,:,jpno3,Kbb) * no3mean / zno3sumb |
---|
[5385] | 447 | |
---|
[10213] | 448 | IF(lwp) WRITE(numout,*) ' SiO3B mean : ', zsilsumb |
---|
[12377] | 449 | tr(:,:,:,jpsil,Kbb) = MIN( 400.e-6,tr(:,:,:,jpsil,Kbb) * silmean / zsilsumb ) |
---|
[10213] | 450 | ENDIF |
---|
[5385] | 451 | ENDIF |
---|
| 452 | ! |
---|
[3443] | 453 | ENDIF |
---|
[5385] | 454 | ! |
---|
[3443] | 455 | END SUBROUTINE p4z_dmp |
---|
| 456 | |
---|
| 457 | |
---|
[12377] | 458 | SUBROUTINE p4z_chk_mass( kt, Kmm ) |
---|
[3443] | 459 | !!---------------------------------------------------------------------- |
---|
| 460 | !! *** ROUTINE p4z_chk_mass *** |
---|
| 461 | !! |
---|
| 462 | !! ** Purpose : Mass conservation check |
---|
| 463 | !! |
---|
| 464 | !!--------------------------------------------------------------------- |
---|
[5547] | 465 | INTEGER, INTENT( in ) :: kt ! ocean time-step index |
---|
[12377] | 466 | INTEGER, INTENT( in ) :: Kmm ! time level indices |
---|
[5547] | 467 | REAL(wp) :: zrdenittot, zsdenittot, znitrpottot |
---|
[5385] | 468 | CHARACTER(LEN=100) :: cltxt |
---|
| 469 | INTEGER :: jk |
---|
[9125] | 470 | REAL(wp), DIMENSION(jpi,jpj,jpk) :: zwork |
---|
[5385] | 471 | !!---------------------------------------------------------------------- |
---|
| 472 | ! |
---|
[3443] | 473 | IF( kt == nittrc000 ) THEN |
---|
[8533] | 474 | xfact1 = rfact2r * 12. / 1.e15 * ryyss ! conversion molC/kt --> PgC/yr |
---|
| 475 | xfact2 = 1.e+3 * rno3 * 14. / 1.e12 * ryyss ! conversion molC/l/s ----> TgN/m3/yr |
---|
| 476 | xfact3 = 1.e+3 * rfact2r * rno3 ! conversion molC/l/kt ----> molN/m3/s |
---|
[3451] | 477 | IF( ln_check_mass .AND. lwp) THEN ! Open budget file of NO3, ALK, Si, Fer |
---|
[3496] | 478 | CALL ctl_opn( numco2, 'carbon.budget' , 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, 6, .FALSE., narea ) |
---|
| 479 | CALL ctl_opn( numnut, 'nutrient.budget', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, 6, .FALSE., narea ) |
---|
[5385] | 480 | CALL ctl_opn( numnit, 'nitrogen.budget', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, 6, .FALSE., narea ) |
---|
| 481 | cltxt='time-step Alkalinity Nitrate Phosphorus Silicate Iron' |
---|
| 482 | IF( lwp ) WRITE(numnut,*) TRIM(cltxt) |
---|
| 483 | IF( lwp ) WRITE(numnut,*) |
---|
[3443] | 484 | ENDIF |
---|
| 485 | ENDIF |
---|
| 486 | |
---|
[4996] | 487 | IF( iom_use( "pno3tot" ) .OR. ( ln_check_mass .AND. kt == nitend ) ) THEN |
---|
| 488 | ! Compute the budget of NO3, ALK, Si, Fer |
---|
[7646] | 489 | IF( ln_p4z ) THEN |
---|
[12377] | 490 | zwork(:,:,:) = tr(:,:,:,jpno3,Kmm) + tr(:,:,:,jpnh4,Kmm) & |
---|
| 491 | & + tr(:,:,:,jpphy,Kmm) + tr(:,:,:,jpdia,Kmm) & |
---|
| 492 | & + tr(:,:,:,jppoc,Kmm) + tr(:,:,:,jpgoc,Kmm) + tr(:,:,:,jpdoc,Kmm) & |
---|
| 493 | & + tr(:,:,:,jpzoo,Kmm) + tr(:,:,:,jpmes,Kmm) |
---|
[7646] | 494 | ELSE |
---|
[12377] | 495 | zwork(:,:,:) = tr(:,:,:,jpno3,Kmm) + tr(:,:,:,jpnh4,Kmm) + tr(:,:,:,jpnph,Kmm) & |
---|
| 496 | & + tr(:,:,:,jpndi,Kmm) + tr(:,:,:,jpnpi,Kmm) & |
---|
| 497 | & + tr(:,:,:,jppon,Kmm) + tr(:,:,:,jpgon,Kmm) + tr(:,:,:,jpdon,Kmm) & |
---|
| 498 | & + ( tr(:,:,:,jpzoo,Kmm) + tr(:,:,:,jpmes,Kmm) ) * no3rat3 |
---|
[7646] | 499 | ENDIF |
---|
| 500 | ! |
---|
[10425] | 501 | no3budget = glob_sum( 'p4zsms', zwork(:,:,:) * cvol(:,:,:) ) |
---|
[7646] | 502 | no3budget = no3budget / areatot |
---|
| 503 | CALL iom_put( "pno3tot", no3budget ) |
---|
[4996] | 504 | ENDIF |
---|
| 505 | ! |
---|
[5385] | 506 | IF( iom_use( "ppo4tot" ) .OR. ( ln_check_mass .AND. kt == nitend ) ) THEN |
---|
[7646] | 507 | IF( ln_p4z ) THEN |
---|
[12377] | 508 | zwork(:,:,:) = tr(:,:,:,jppo4,Kmm) & |
---|
| 509 | & + tr(:,:,:,jpphy,Kmm) + tr(:,:,:,jpdia,Kmm) & |
---|
| 510 | & + tr(:,:,:,jppoc,Kmm) + tr(:,:,:,jpgoc,Kmm) + tr(:,:,:,jpdoc,Kmm) & |
---|
| 511 | & + tr(:,:,:,jpzoo,Kmm) + tr(:,:,:,jpmes,Kmm) |
---|
[7646] | 512 | ELSE |
---|
[12377] | 513 | zwork(:,:,:) = tr(:,:,:,jppo4,Kmm) + tr(:,:,:,jppph,Kmm) & |
---|
| 514 | & + tr(:,:,:,jppdi,Kmm) + tr(:,:,:,jpppi,Kmm) & |
---|
| 515 | & + tr(:,:,:,jppop,Kmm) + tr(:,:,:,jpgop,Kmm) + tr(:,:,:,jpdop,Kmm) & |
---|
| 516 | & + ( tr(:,:,:,jpzoo,Kmm) + tr(:,:,:,jpmes,Kmm) ) * po4rat3 |
---|
[7646] | 517 | ENDIF |
---|
| 518 | ! |
---|
[10425] | 519 | po4budget = glob_sum( 'p4zsms', zwork(:,:,:) * cvol(:,:,:) ) |
---|
[7646] | 520 | po4budget = po4budget / areatot |
---|
| 521 | CALL iom_put( "ppo4tot", po4budget ) |
---|
[5385] | 522 | ENDIF |
---|
| 523 | ! |
---|
| 524 | IF( iom_use( "psiltot" ) .OR. ( ln_check_mass .AND. kt == nitend ) ) THEN |
---|
[12377] | 525 | zwork(:,:,:) = tr(:,:,:,jpsil,Kmm) + tr(:,:,:,jpgsi,Kmm) + tr(:,:,:,jpdsi,Kmm) |
---|
[4996] | 526 | ! |
---|
[10425] | 527 | silbudget = glob_sum( 'p4zsms', zwork(:,:,:) * cvol(:,:,:) ) |
---|
[4996] | 528 | silbudget = silbudget / areatot |
---|
| 529 | CALL iom_put( "psiltot", silbudget ) |
---|
| 530 | ENDIF |
---|
| 531 | ! |
---|
[5385] | 532 | IF( iom_use( "palktot" ) .OR. ( ln_check_mass .AND. kt == nitend ) ) THEN |
---|
[12377] | 533 | zwork(:,:,:) = tr(:,:,:,jpno3,Kmm) * rno3 + tr(:,:,:,jptal,Kmm) + tr(:,:,:,jpcal,Kmm) * 2. |
---|
[4996] | 534 | ! |
---|
[10425] | 535 | alkbudget = glob_sum( 'p4zsms', zwork(:,:,:) * cvol(:,:,:) ) ! |
---|
[4996] | 536 | alkbudget = alkbudget / areatot |
---|
| 537 | CALL iom_put( "palktot", alkbudget ) |
---|
| 538 | ENDIF |
---|
| 539 | ! |
---|
[5385] | 540 | IF( iom_use( "pfertot" ) .OR. ( ln_check_mass .AND. kt == nitend ) ) THEN |
---|
[12377] | 541 | zwork(:,:,:) = tr(:,:,:,jpfer,Kmm) + tr(:,:,:,jpnfe,Kmm) + tr(:,:,:,jpdfe,Kmm) & |
---|
| 542 | & + tr(:,:,:,jpbfe,Kmm) + tr(:,:,:,jpsfe,Kmm) & |
---|
| 543 | & + ( tr(:,:,:,jpzoo,Kmm) + tr(:,:,:,jpmes,Kmm) ) * ferat3 |
---|
[3496] | 544 | ! |
---|
[10425] | 545 | ferbudget = glob_sum( 'p4zsms', zwork(:,:,:) * cvol(:,:,:) ) |
---|
[3496] | 546 | ferbudget = ferbudget / areatot |
---|
[4996] | 547 | CALL iom_put( "pfertot", ferbudget ) |
---|
[3496] | 548 | ENDIF |
---|
[4996] | 549 | ! |
---|
[5385] | 550 | ! Global budget of N SMS : denitrification in the water column and in the sediment |
---|
| 551 | ! nitrogen fixation by the diazotrophs |
---|
| 552 | ! -------------------------------------------------------------------------------- |
---|
| 553 | IF( iom_use( "tnfix" ) .OR. ( ln_check_mass .AND. kt == nitend ) ) THEN |
---|
[10425] | 554 | znitrpottot = glob_sum ( 'p4zsms', nitrpot(:,:,:) * nitrfix * cvol(:,:,:) ) |
---|
[8533] | 555 | CALL iom_put( "tnfix" , znitrpottot * xfact3 ) ! Global nitrogen fixation molC/l to molN/m3 |
---|
[5385] | 556 | ENDIF |
---|
| 557 | ! |
---|
| 558 | IF( iom_use( "tdenit" ) .OR. ( ln_check_mass .AND. kt == nitend ) ) THEN |
---|
[10425] | 559 | zrdenittot = glob_sum ( 'p4zsms', denitr(:,:,:) * rdenit * xnegtr(:,:,:) * cvol(:,:,:) ) |
---|
| 560 | zsdenittot = glob_sum ( 'p4zsms', sdenit(:,:) * e1e2t(:,:) * tmask(:,:,1) ) |
---|
[8533] | 561 | CALL iom_put( "tdenit" , ( zrdenittot + zsdenittot ) * xfact3 ) ! Total denitrification molC/l to molN/m3 |
---|
[5385] | 562 | ENDIF |
---|
| 563 | ! |
---|
[4996] | 564 | IF( ln_check_mass .AND. kt == nitend ) THEN ! Compute the budget of NO3, ALK, Si, Fer |
---|
[10425] | 565 | t_atm_co2_flx = t_atm_co2_flx / glob_sum( 'p4zsms', e1e2t(:,:) ) |
---|
[5385] | 566 | t_oce_co2_flx = t_oce_co2_flx * xfact1 * (-1 ) |
---|
| 567 | tpp = tpp * 1000. * xfact1 |
---|
| 568 | t_oce_co2_exp = t_oce_co2_exp * 1000. * xfact1 |
---|
[4996] | 569 | IF( lwp ) WRITE(numco2,9000) ndastp, t_atm_co2_flx, t_oce_co2_flx, tpp, t_oce_co2_exp |
---|
[5385] | 570 | IF( lwp ) WRITE(numnut,9100) ndastp, alkbudget * 1.e+06, & |
---|
[4996] | 571 | & no3budget * rno3 * 1.e+06, & |
---|
[5385] | 572 | & po4budget * po4r * 1.e+06, & |
---|
[4996] | 573 | & silbudget * 1.e+06, & |
---|
| 574 | & ferbudget * 1.e+09 |
---|
[5385] | 575 | ! |
---|
| 576 | IF( lwp ) WRITE(numnit,9200) ndastp, znitrpottot * xfact2 , & |
---|
[9124] | 577 | & zrdenittot * xfact2 , & |
---|
| 578 | & zsdenittot * xfact2 |
---|
[4996] | 579 | ENDIF |
---|
| 580 | ! |
---|
[3496] | 581 | 9000 FORMAT(i8,f10.5,e18.10,f10.5,f10.5) |
---|
[5385] | 582 | 9100 FORMAT(i8,5e18.10) |
---|
| 583 | 9200 FORMAT(i8,3f10.5) |
---|
[3443] | 584 | ! |
---|
| 585 | END SUBROUTINE p4z_chk_mass |
---|
| 586 | |
---|
| 587 | !!====================================================================== |
---|
| 588 | END MODULE p4zsms |
---|