[7162] | 1 | MODULE p5zmeso |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE p5zmeso *** |
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| 4 | !! TOP : PISCES Compute the sources/sinks for mesozooplankton |
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| 5 | !!====================================================================== |
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| 6 | !! History : 1.0 ! 2002 (O. Aumont) Original code |
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| 7 | !! 2.0 ! 2007-12 (C. Ethe, G. Madec) F90 |
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| 8 | !! 3.4 ! 2011-06 (O. Aumont, C. Ethe) Quota model for iron |
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| 9 | !! 3.6 ! 2015-05 (O. Aumont) PISCES quota |
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| 10 | !!---------------------------------------------------------------------- |
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| 11 | !! p5z_meso : Compute the sources/sinks for mesozooplankton |
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| 12 | !! p5z_meso_init : Initialization of the parameters for mesozooplankton |
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| 13 | !!---------------------------------------------------------------------- |
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| 14 | USE oce_trc ! shared variables between ocean and passive tracers |
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| 15 | USE trc ! passive tracers common variables |
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| 16 | USE sms_pisces ! PISCES Source Minus Sink variables |
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[13286] | 17 | USE prtctl ! print control for debugging |
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[7162] | 18 | USE iom ! I/O manager |
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| 19 | |
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| 20 | IMPLICIT NONE |
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| 21 | PRIVATE |
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| 22 | |
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| 23 | PUBLIC p5z_meso ! called in p5zbio.F90 |
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| 24 | PUBLIC p5z_meso_init ! called in trcsms_pisces.F90 |
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| 25 | |
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| 26 | !! * Shared module variables |
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| 27 | REAL(wp), PUBLIC :: part2 !: part of calcite not dissolved in mesozoo guts |
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| 28 | REAL(wp), PUBLIC :: xpref2c !: mesozoo preference for POC |
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[10362] | 29 | REAL(wp), PUBLIC :: xpref2n !: mesozoo preference for nanophyto |
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[7162] | 30 | REAL(wp), PUBLIC :: xpref2z !: mesozoo preference for zooplankton |
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| 31 | REAL(wp), PUBLIC :: xpref2d !: mesozoo preference for Diatoms |
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| 32 | REAL(wp), PUBLIC :: xpref2m !: mesozoo preference for mesozoo |
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| 33 | REAL(wp), PUBLIC :: xthresh2zoo !: zoo feeding threshold for mesozooplankton |
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| 34 | REAL(wp), PUBLIC :: xthresh2dia !: diatoms feeding threshold for mesozooplankton |
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| 35 | REAL(wp), PUBLIC :: xthresh2phy !: nanophyto feeding threshold for mesozooplankton |
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| 36 | REAL(wp), PUBLIC :: xthresh2poc !: poc feeding threshold for mesozooplankton |
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| 37 | REAL(wp), PUBLIC :: xthresh2mes !: mesozoo feeding threshold for mesozooplankton |
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| 38 | REAL(wp), PUBLIC :: xthresh2 !: feeding threshold for mesozooplankton |
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| 39 | REAL(wp), PUBLIC :: resrat2 !: exsudation rate of mesozooplankton |
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| 40 | REAL(wp), PUBLIC :: mzrat2 !: microzooplankton mortality rate |
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| 41 | REAL(wp), PUBLIC :: grazrat2 !: maximal mesozoo grazing rate |
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[10362] | 42 | REAL(wp), PUBLIC :: xkgraz2 !: Half-saturation constant of assimilation |
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| 43 | REAL(wp), PUBLIC :: unass2c !: Non-assimilated fraction of food |
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| 44 | REAL(wp), PUBLIC :: unass2n !: Non-assimilated fraction of food |
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| 45 | REAL(wp), PUBLIC :: unass2p !: Non-assimilated fraction of food |
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| 46 | REAL(wp), PUBLIC :: epsher2 !: Growth efficiency of mesozoo |
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| 47 | REAL(wp), PUBLIC :: epsher2min !: Minimum growth efficiency of mesozoo |
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[7162] | 48 | REAL(wp), PUBLIC :: ssigma2 !: Fraction excreted as semi-labile DOM |
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| 49 | REAL(wp), PUBLIC :: srespir2 !: Active respiration |
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| 50 | REAL(wp), PUBLIC :: grazflux !: mesozoo flux feeding rate |
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| 51 | LOGICAL, PUBLIC :: bmetexc2 !: Use of excess carbon for respiration |
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| 52 | |
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[12377] | 53 | !! * Substitutions |
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| 54 | # include "do_loop_substitute.h90" |
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[14219] | 55 | # include "single_precision_substitute.h90" |
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[7162] | 56 | !!---------------------------------------------------------------------- |
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[10067] | 57 | !! NEMO/TOP 4.0 , NEMO Consortium (2018) |
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[10068] | 58 | !! $Id$ |
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| 59 | !! Software governed by the CeCILL license (see ./LICENSE) |
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[7162] | 60 | !!---------------------------------------------------------------------- |
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| 61 | |
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| 62 | CONTAINS |
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| 63 | |
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[12377] | 64 | SUBROUTINE p5z_meso( kt, knt, Kbb, Krhs ) |
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[7162] | 65 | !!--------------------------------------------------------------------- |
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| 66 | !! *** ROUTINE p5z_meso *** |
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| 67 | !! |
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| 68 | !! ** Purpose : Compute the sources/sinks for mesozooplankton |
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| 69 | !! |
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| 70 | !! ** Method : - ??? |
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| 71 | !!--------------------------------------------------------------------- |
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[12377] | 72 | INTEGER, INTENT(in) :: kt, knt ! ocean time step |
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| 73 | INTEGER, INTENT(in) :: Kbb, Krhs ! time level indices |
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[7162] | 74 | INTEGER :: ji, jj, jk |
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| 75 | REAL(wp) :: zcompadi, zcompaph, zcompapoc, zcompaz, zcompam, zcompames |
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| 76 | REAL(wp) :: zgraze2, zdenom, zfact, zfood, zfoodlim, zproport |
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| 77 | REAL(wp) :: zmortzgoc, zfracc, zfracn, zfracp, zfracfe, zratio, zratio2 |
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| 78 | REAL(wp) :: zepsherf, zepshert, zepsherv, zrespirc, zrespirn, zrespirp, zbasresb, zbasresi |
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| 79 | REAL(wp) :: zgraztotc, zgraztotn, zgraztotp, zgraztotf, zbasresn, zbasresp, zbasresf |
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| 80 | REAL(wp) :: zgradoc, zgradon, zgradop, zgratmp, zgradoct, zgradont, zgrareft, zgradopt |
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| 81 | REAL(wp) :: zgrapoc, zgrapon, zgrapop, zgrapof, zprcaca, zmortz |
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| 82 | REAL(wp) :: zexcess, zgrarem, zgraren, zgrarep, zgraref |
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| 83 | REAL(wp) :: zbeta, zrespz, ztortz, zgrasratp, zgrasratn, zgrasratf |
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| 84 | REAL(wp) :: ztmp1, ztmp2, ztmp3, ztmp4, ztmp5, ztmptot |
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| 85 | REAL(wp) :: zgrazdc, zgrazz, zgrazm, zgrazpof, zgrazcal, zfracal |
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| 86 | REAL(wp) :: zgraznc, zgrazpoc, zgrazpon, zgrazpop, zgraznf, zgrazdf |
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| 87 | REAL(wp) :: zgraznp, zgraznn, zgrazdn, zgrazdp |
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| 88 | REAL(wp) :: zgrazfffp, zgrazfffg, zgrazffep, zgrazffeg |
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| 89 | REAL(wp) :: zgrazffnp, zgrazffng, zgrazffpp, zgrazffpg |
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| 90 | CHARACTER (len=25) :: charout |
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| 91 | REAL(wp) :: zrfact2, zmetexcess |
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[12377] | 92 | REAL(wp), DIMENSION(jpi,jpj,jpk) :: zgrazing, zfezoo2, zz2ligprod |
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[7162] | 93 | |
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| 94 | !!--------------------------------------------------------------------- |
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| 95 | ! |
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[9124] | 96 | IF( ln_timing ) CALL timing_start('p5z_meso') |
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[7162] | 97 | ! |
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| 98 | zmetexcess = 0.0 |
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| 99 | IF ( bmetexc2 ) zmetexcess = 1.0 |
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| 100 | |
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[13295] | 101 | DO_3D( 1, 1, 1, 1, 1, jpkm1 ) |
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[12377] | 102 | zcompam = MAX( ( tr(ji,jj,jk,jpmes,Kbb) - 1.e-9 ), 0.e0 ) |
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| 103 | zfact = xstep * tgfunc2(ji,jj,jk) * zcompam |
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[7162] | 104 | |
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[12377] | 105 | ! Michaelis-Menten mortality rates of mesozooplankton |
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| 106 | ! --------------------------------------------------- |
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| 107 | zrespz = resrat2 * zfact * ( tr(ji,jj,jk,jpmes,Kbb) / ( xkmort + tr(ji,jj,jk,jpmes,Kbb) ) & |
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| 108 | & + 3. * nitrfac(ji,jj,jk) ) |
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[7162] | 109 | |
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[12377] | 110 | ! Zooplankton mortality. A square function has been selected with |
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| 111 | ! no real reason except that it seems to be more stable and may mimic predation |
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| 112 | ! --------------------------------------------------------------- |
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| 113 | ztortz = mzrat2 * 1.e6 * zfact * tr(ji,jj,jk,jpmes,Kbb) * (1. - nitrfac(ji,jj,jk)) |
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[7162] | 114 | |
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[12377] | 115 | ! Computation of the abundance of the preys |
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| 116 | ! A threshold can be specified in the namelist |
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| 117 | ! -------------------------------------------- |
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| 118 | zcompadi = MAX( ( tr(ji,jj,jk,jpdia,Kbb) - xthresh2dia ), 0.e0 ) |
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| 119 | zcompaz = MAX( ( tr(ji,jj,jk,jpzoo,Kbb) - xthresh2zoo ), 0.e0 ) |
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| 120 | zcompaph = MAX( ( tr(ji,jj,jk,jpphy,Kbb) - xthresh2phy ), 0.e0 ) |
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| 121 | zcompapoc = MAX( ( tr(ji,jj,jk,jppoc,Kbb) - xthresh2poc ), 0.e0 ) |
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| 122 | zcompames = MAX( ( tr(ji,jj,jk,jpmes,Kbb) - xthresh2mes ), 0.e0 ) |
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[7162] | 123 | |
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[12377] | 124 | ! Mesozooplankton grazing |
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| 125 | ! ------------------------ |
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| 126 | zfood = xpref2d * zcompadi + xpref2z * zcompaz + xpref2n * zcompaph + xpref2c * zcompapoc & |
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| 127 | & + xpref2m * zcompames |
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| 128 | zfoodlim = MAX( 0., zfood - MIN( 0.5 * zfood, xthresh2 ) ) |
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| 129 | zdenom = zfoodlim / ( xkgraz2 + zfoodlim ) |
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| 130 | zgraze2 = grazrat2 * xstep * tgfunc2(ji,jj,jk) * tr(ji,jj,jk,jpmes,Kbb) * (1. - nitrfac(ji,jj,jk)) |
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[7162] | 131 | |
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[12377] | 132 | ! An active switching parameterization is used here. |
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| 133 | ! We don't use the KTW parameterization proposed by |
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| 134 | ! Vallina et al. because it tends to produce to steady biomass |
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| 135 | ! composition and the variance of Chl is too low as it grazes |
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| 136 | ! too strongly on winning organisms. Thus, instead of a square |
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| 137 | ! a 1.5 power value is used which decreases the pressure on the |
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| 138 | ! most abundant species |
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| 139 | ! ------------------------------------------------------------ |
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| 140 | ztmp1 = xpref2n * zcompaph**1.5 |
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| 141 | ztmp2 = xpref2m * zcompames**1.5 |
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| 142 | ztmp3 = xpref2c * zcompapoc**1.5 |
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| 143 | ztmp4 = xpref2d * zcompadi**1.5 |
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| 144 | ztmp5 = xpref2z * zcompaz**1.5 |
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| 145 | ztmptot = ztmp1 + ztmp2 + ztmp3 + ztmp4 + ztmp5 + rtrn |
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| 146 | ztmp1 = ztmp1 / ztmptot |
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| 147 | ztmp2 = ztmp2 / ztmptot |
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| 148 | ztmp3 = ztmp3 / ztmptot |
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| 149 | ztmp4 = ztmp4 / ztmptot |
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| 150 | ztmp5 = ztmp5 / ztmptot |
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[7162] | 151 | |
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[12377] | 152 | ! Mesozooplankton regular grazing on the different preys |
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| 153 | ! ------------------------------------------------------ |
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| 154 | zgrazdc = zgraze2 * ztmp4 * zdenom |
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| 155 | zgrazdn = zgrazdc * tr(ji,jj,jk,jpndi,Kbb) / ( tr(ji,jj,jk,jpdia,Kbb) + rtrn) |
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| 156 | zgrazdp = zgrazdc * tr(ji,jj,jk,jppdi,Kbb) / ( tr(ji,jj,jk,jpdia,Kbb) + rtrn) |
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| 157 | zgrazdf = zgrazdc * tr(ji,jj,jk,jpdfe,Kbb) / ( tr(ji,jj,jk,jpdia,Kbb) + rtrn) |
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| 158 | zgrazz = zgraze2 * ztmp5 * zdenom |
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| 159 | zgrazm = zgraze2 * ztmp2 * zdenom |
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| 160 | zgraznc = zgraze2 * ztmp1 * zdenom |
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| 161 | zgraznn = zgraznc * tr(ji,jj,jk,jpnph,Kbb) / ( tr(ji,jj,jk,jpphy,Kbb) + rtrn) |
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| 162 | zgraznp = zgraznc * tr(ji,jj,jk,jppph,Kbb) / ( tr(ji,jj,jk,jpphy,Kbb) + rtrn) |
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| 163 | zgraznf = zgraznc * tr(ji,jj,jk,jpnfe,Kbb) / ( tr(ji,jj,jk,jpphy,Kbb) + rtrn) |
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| 164 | zgrazpoc = zgraze2 * ztmp3 * zdenom |
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| 165 | zgrazpon = zgrazpoc * tr(ji,jj,jk,jppon,Kbb) / ( tr(ji,jj,jk,jppoc,Kbb) + rtrn) |
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| 166 | zgrazpop = zgrazpoc * tr(ji,jj,jk,jppop,Kbb) / ( tr(ji,jj,jk,jppoc,Kbb) + rtrn) |
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| 167 | zgrazpof = zgrazpoc * tr(ji,jj,jk,jpsfe,Kbb) / ( tr(ji,jj,jk,jppoc,Kbb) + rtrn) |
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[7162] | 168 | |
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[12377] | 169 | ! Mesozooplankton flux feeding on GOC |
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| 170 | ! ---------------------------------- |
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| 171 | zgrazffeg = grazflux * xstep * wsbio4(ji,jj,jk) & |
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| 172 | & * tgfunc2(ji,jj,jk) * tr(ji,jj,jk,jpgoc,Kbb) * tr(ji,jj,jk,jpmes,Kbb) & |
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| 173 | & * (1. - nitrfac(ji,jj,jk)) |
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| 174 | zgrazfffg = zgrazffeg * tr(ji,jj,jk,jpbfe,Kbb) / (tr(ji,jj,jk,jpgoc,Kbb) + rtrn) |
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| 175 | zgrazffng = zgrazffeg * tr(ji,jj,jk,jpgon,Kbb) / (tr(ji,jj,jk,jpgoc,Kbb) + rtrn) |
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| 176 | zgrazffpg = zgrazffeg * tr(ji,jj,jk,jpgop,Kbb) / (tr(ji,jj,jk,jpgoc,Kbb) + rtrn) |
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| 177 | zgrazffep = grazflux * xstep * wsbio3(ji,jj,jk) & |
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| 178 | & * tgfunc2(ji,jj,jk) * tr(ji,jj,jk,jppoc,Kbb) * tr(ji,jj,jk,jpmes,Kbb) & |
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| 179 | & * (1. - nitrfac(ji,jj,jk)) |
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| 180 | zgrazfffp = zgrazffep * tr(ji,jj,jk,jpsfe,Kbb) / (tr(ji,jj,jk,jppoc,Kbb) + rtrn) |
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| 181 | zgrazffnp = zgrazffep * tr(ji,jj,jk,jppon,Kbb) / (tr(ji,jj,jk,jppoc,Kbb) + rtrn) |
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| 182 | zgrazffpp = zgrazffep * tr(ji,jj,jk,jppop,Kbb) / (tr(ji,jj,jk,jppoc,Kbb) + rtrn) |
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| 183 | ! |
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| 184 | zgraztotc = zgrazdc + zgrazz + zgraznc + zgrazm + zgrazpoc + zgrazffep + zgrazffeg |
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[7162] | 185 | |
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[12377] | 186 | ! Compute the proportion of filter feeders |
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| 187 | ! ---------------------------------------- |
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| 188 | zproport = (zgrazffep + zgrazffeg)/(rtrn + zgraztotc) |
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[7162] | 189 | |
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[12377] | 190 | ! Compute fractionation of aggregates. It is assumed that |
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| 191 | ! diatoms based aggregates are more prone to fractionation |
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| 192 | ! since they are more porous (marine snow instead of fecal pellets) |
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| 193 | ! ---------------------------------------------------------------- |
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| 194 | zratio = tr(ji,jj,jk,jpgsi,Kbb) / ( tr(ji,jj,jk,jpgoc,Kbb) + rtrn ) |
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| 195 | zratio2 = zratio * zratio |
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| 196 | zfracc = zproport * grazflux * xstep * wsbio4(ji,jj,jk) & |
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| 197 | & * tr(ji,jj,jk,jpgoc,Kbb) * tr(ji,jj,jk,jpmes,Kbb) & |
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| 198 | & * ( 0.2 + 3.8 * zratio2 / ( 1.**2 + zratio2 ) ) |
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| 199 | zfracfe = zfracc * tr(ji,jj,jk,jpbfe,Kbb) / (tr(ji,jj,jk,jpgoc,Kbb) + rtrn) |
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| 200 | zfracn = zfracc * tr(ji,jj,jk,jpgon,Kbb) / (tr(ji,jj,jk,jpgoc,Kbb) + rtrn) |
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| 201 | zfracp = zfracc * tr(ji,jj,jk,jpgop,Kbb) / (tr(ji,jj,jk,jpgoc,Kbb) + rtrn) |
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[7162] | 202 | |
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[12377] | 203 | zgrazffep = zproport * zgrazffep ; zgrazffeg = zproport * zgrazffeg |
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| 204 | zgrazfffp = zproport * zgrazfffp ; zgrazfffg = zproport * zgrazfffg |
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| 205 | zgrazffnp = zproport * zgrazffnp ; zgrazffng = zproport * zgrazffng |
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| 206 | zgrazffpp = zproport * zgrazffpp ; zgrazffpg = zproport * zgrazffpg |
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[7162] | 207 | |
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[12377] | 208 | zgraztotc = zgrazdc + zgrazz + zgraznc + zgrazm + zgrazpoc + zgrazffep + zgrazffeg |
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| 209 | zgraztotf = zgrazdf + zgraznf + ( zgrazz + zgrazm ) * ferat3 + zgrazpof & |
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| 210 | & + zgrazfffp + zgrazfffg |
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| 211 | zgraztotn = zgrazdn + (zgrazm + zgrazz) * no3rat3 + zgraznn + zgrazpon & |
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| 212 | & + zgrazffnp + zgrazffng |
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| 213 | zgraztotp = zgrazdp + (zgrazz + zgrazm) * po4rat3 + zgraznp + zgrazpop & |
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| 214 | & + zgrazffpp + zgrazffpg |
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[7162] | 215 | |
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| 216 | |
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[12377] | 217 | ! Total grazing ( grazing by microzoo is already computed in p5zmicro ) |
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| 218 | zgrazing(ji,jj,jk) = zgraztotc |
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[7162] | 219 | |
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[12377] | 220 | ! Stoichiometruc ratios of the food ingested by zooplanton |
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| 221 | ! -------------------------------------------------------- |
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| 222 | zgrasratf = (zgraztotf + rtrn) / ( zgraztotc + rtrn ) |
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| 223 | zgrasratn = (zgraztotn + rtrn) / ( zgraztotc + rtrn ) |
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| 224 | zgrasratp = (zgraztotp + rtrn) / ( zgraztotc + rtrn ) |
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[7162] | 225 | |
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[12377] | 226 | ! Growth efficiency is made a function of the quality |
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| 227 | ! and the quantity of the preys |
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| 228 | ! --------------------------------------------------- |
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| 229 | zepshert = MIN( 1., zgrasratn/ no3rat3, zgrasratp/ po4rat3, zgrasratf / ferat3) |
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| 230 | zbeta = MAX(0., (epsher2 - epsher2min) ) |
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| 231 | zepsherf = epsher2min + zbeta / ( 1.0 + 0.04E6 * 12. * zfood * zbeta ) |
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| 232 | zepsherv = zepsherf * zepshert |
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[7162] | 233 | |
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[12377] | 234 | ! Respiration of mesozooplankton |
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| 235 | ! Excess carbon in the food is used preferentially |
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| 236 | ! ---------------- ------------------------------ |
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| 237 | zexcess = zgraztotc * zepsherf * (1.0 - zepshert) * zmetexcess |
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| 238 | zbasresb = MAX(0., zrespz - zexcess) |
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| 239 | zbasresi = zexcess + MIN(0., zrespz - zexcess) |
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| 240 | zrespirc = srespir2 * zepsherv * zgraztotc + zbasresb |
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[7162] | 241 | |
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[12377] | 242 | ! When excess carbon is used, the other elements in excess |
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| 243 | ! are also used proportionally to their abundance |
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| 244 | ! -------------------------------------------------------- |
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| 245 | zexcess = ( zgrasratn/ no3rat3 - zepshert ) / ( 1.0 - zepshert + rtrn) |
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| 246 | zbasresn = zbasresi * zexcess * zgrasratn |
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| 247 | zexcess = ( zgrasratp/ po4rat3 - zepshert ) / ( 1.0 - zepshert + rtrn) |
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| 248 | zbasresp = zbasresi * zexcess * zgrasratp |
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| 249 | zexcess = ( zgrasratf/ ferat3 - zepshert ) / ( 1.0 - zepshert + rtrn) |
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| 250 | zbasresf = zbasresi * zexcess * zgrasratf |
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[7162] | 251 | |
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[12377] | 252 | ! Voiding of the excessive elements as organic matter |
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| 253 | ! -------------------------------------------------------- |
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| 254 | zgradoct = (1. - unass2c - zepsherv) * zgraztotc - zbasresi |
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| 255 | zgradont = (1. - unass2n) * zgraztotn - zepsherv * no3rat3 * zgraztotc - zbasresn |
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| 256 | zgradopt = (1. - unass2p) * zgraztotp - zepsherv * po4rat3 * zgraztotc - zbasresp |
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| 257 | zgrareft = (1. - unass2c) * zgraztotf - zepsherv * ferat3 * zgraztotc - zbasresf |
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| 258 | ztmp1 = ( 1. - epsher2 - unass2c ) /( 1. - 0.8 * epsher2 ) * ztortz |
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| 259 | zgradoc = (zgradoct + ztmp1) * ssigma2 |
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| 260 | zgradon = (zgradont + no3rat3 * ztmp1) * ssigma2 |
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| 261 | zgradop = (zgradopt + po4rat3 * ztmp1) * ssigma2 |
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| 262 | zgratmp = 0.2 * epsher2 /( 1. - 0.8 * epsher2 ) * ztortz |
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[7162] | 263 | |
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[12377] | 264 | ! Since only semilabile DOM is represented in PISCES |
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| 265 | ! part of DOM is in fact labile and is then released |
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| 266 | ! as dissolved inorganic compounds (ssigma2) |
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| 267 | ! -------------------------------------------------- |
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| 268 | zgrarem = zgratmp + ( zgradoct + ztmp1 ) * (1.0 - ssigma2) |
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| 269 | zgraren = no3rat3 * zgratmp + ( zgradont + no3rat3 * ztmp1 ) * (1.0 - ssigma2) |
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| 270 | zgrarep = po4rat3 * zgratmp + ( zgradopt + po4rat3 * ztmp1 ) * (1.0 - ssigma2) |
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| 271 | zgraref = zgrareft + ferat3 * ( ztmp1 + zgratmp ) |
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[7162] | 272 | |
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[12377] | 273 | ! Defecation as a result of non assimilated products |
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| 274 | ! -------------------------------------------------- |
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| 275 | zgrapoc = zgraztotc * unass2c + unass2c / ( 1. - 0.8 * epsher2 ) * ztortz |
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| 276 | zgrapon = zgraztotn * unass2n + no3rat3 * unass2n / ( 1. - 0.8 * epsher2 ) * ztortz |
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| 277 | zgrapop = zgraztotp * unass2p + po4rat3 * unass2p / ( 1. - 0.8 * epsher2 ) * ztortz |
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| 278 | zgrapof = zgraztotf * unass2c + ferat3 * unass2c / ( 1. - 0.8 * epsher2 ) * ztortz |
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[7162] | 279 | |
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[12377] | 280 | ! Addition of respiration to the release of inorganic nutrients |
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| 281 | ! ------------------------------------------------------------- |
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| 282 | zgrarem = zgrarem + zbasresi + zrespirc |
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| 283 | zgraren = zgraren + zbasresn + zrespirc * no3rat3 |
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| 284 | zgrarep = zgrarep + zbasresp + zrespirc * po4rat3 |
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| 285 | zgraref = zgraref + zbasresf + zrespirc * ferat3 |
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[7162] | 286 | |
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[12377] | 287 | ! Update the arrays TRA which contain the biological sources and |
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| 288 | ! sinks |
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| 289 | ! -------------------------------------------------------------- |
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| 290 | tr(ji,jj,jk,jppo4,Krhs) = tr(ji,jj,jk,jppo4,Krhs) + zgrarep |
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| 291 | tr(ji,jj,jk,jpnh4,Krhs) = tr(ji,jj,jk,jpnh4,Krhs) + zgraren |
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| 292 | tr(ji,jj,jk,jpdoc,Krhs) = tr(ji,jj,jk,jpdoc,Krhs) + zgradoc |
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| 293 | ! |
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| 294 | IF( ln_ligand ) THEN |
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| 295 | tr(ji,jj,jk,jplgw,Krhs) = tr(ji,jj,jk,jplgw,Krhs) + zgradoc * ldocz |
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| 296 | zz2ligprod(ji,jj,jk) = zgradoc * ldocz |
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| 297 | ENDIF |
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| 298 | ! |
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| 299 | tr(ji,jj,jk,jpdon,Krhs) = tr(ji,jj,jk,jpdon,Krhs) + zgradon |
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| 300 | tr(ji,jj,jk,jpdop,Krhs) = tr(ji,jj,jk,jpdop,Krhs) + zgradop |
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| 301 | tr(ji,jj,jk,jpoxy,Krhs) = tr(ji,jj,jk,jpoxy,Krhs) - o2ut * zgrarem |
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| 302 | tr(ji,jj,jk,jpfer,Krhs) = tr(ji,jj,jk,jpfer,Krhs) + zgraref |
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| 303 | zfezoo2(ji,jj,jk) = zgraref |
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| 304 | tr(ji,jj,jk,jpdic,Krhs) = tr(ji,jj,jk,jpdic,Krhs) + zgrarem |
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| 305 | tr(ji,jj,jk,jptal,Krhs) = tr(ji,jj,jk,jptal,Krhs) + rno3 * zgraren |
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| 306 | tr(ji,jj,jk,jpmes,Krhs) = tr(ji,jj,jk,jpmes,Krhs) + zepsherv * zgraztotc - zrespirc & |
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| 307 | & - ztortz - zgrazm |
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| 308 | tr(ji,jj,jk,jpdia,Krhs) = tr(ji,jj,jk,jpdia,Krhs) - zgrazdc |
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| 309 | tr(ji,jj,jk,jpndi,Krhs) = tr(ji,jj,jk,jpndi,Krhs) - zgrazdn |
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| 310 | tr(ji,jj,jk,jppdi,Krhs) = tr(ji,jj,jk,jppdi,Krhs) - zgrazdp |
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| 311 | tr(ji,jj,jk,jpdfe,Krhs) = tr(ji,jj,jk,jpdfe,Krhs) - zgrazdf |
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| 312 | tr(ji,jj,jk,jpzoo,Krhs) = tr(ji,jj,jk,jpzoo,Krhs) - zgrazz |
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| 313 | tr(ji,jj,jk,jpphy,Krhs) = tr(ji,jj,jk,jpphy,Krhs) - zgraznc |
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| 314 | tr(ji,jj,jk,jpnph,Krhs) = tr(ji,jj,jk,jpnph,Krhs) - zgraznn |
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| 315 | tr(ji,jj,jk,jppph,Krhs) = tr(ji,jj,jk,jppph,Krhs) - zgraznp |
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| 316 | tr(ji,jj,jk,jpnfe,Krhs) = tr(ji,jj,jk,jpnfe,Krhs) - zgraznf |
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| 317 | tr(ji,jj,jk,jpnch,Krhs) = tr(ji,jj,jk,jpnch,Krhs) - zgraznc * tr(ji,jj,jk,jpnch,Kbb) / ( tr(ji,jj,jk,jpphy,Kbb) + rtrn ) |
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| 318 | tr(ji,jj,jk,jpdch,Krhs) = tr(ji,jj,jk,jpdch,Krhs) - zgrazdc * tr(ji,jj,jk,jpdch,Kbb) / ( tr(ji,jj,jk,jpdia,Kbb) + rtrn ) |
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| 319 | tr(ji,jj,jk,jpdsi,Krhs) = tr(ji,jj,jk,jpdsi,Krhs) - zgrazdc * tr(ji,jj,jk,jpdsi,Kbb) / ( tr(ji,jj,jk,jpdia,Kbb) + rtrn ) |
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| 320 | tr(ji,jj,jk,jpgsi,Krhs) = tr(ji,jj,jk,jpgsi,Krhs) + zgrazdc * tr(ji,jj,jk,jpdsi,Kbb) / ( tr(ji,jj,jk,jpdia,Kbb) + rtrn ) |
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[7162] | 321 | |
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[12377] | 322 | tr(ji,jj,jk,jppoc,Krhs) = tr(ji,jj,jk,jppoc,Krhs) - zgrazpoc - zgrazffep + zfracc |
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| 323 | prodpoc(ji,jj,jk) = prodpoc(ji,jj,jk) + zfracc |
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| 324 | conspoc(ji,jj,jk) = conspoc(ji,jj,jk) - zgrazpoc - zgrazffep |
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| 325 | tr(ji,jj,jk,jppon,Krhs) = tr(ji,jj,jk,jppon,Krhs) - zgrazpon - zgrazffnp + zfracn |
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| 326 | tr(ji,jj,jk,jppop,Krhs) = tr(ji,jj,jk,jppop,Krhs) - zgrazpop - zgrazffpp + zfracp |
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| 327 | tr(ji,jj,jk,jpgoc,Krhs) = tr(ji,jj,jk,jpgoc,Krhs) - zgrazffeg + zgrapoc - zfracc |
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| 328 | prodgoc(ji,jj,jk) = prodgoc(ji,jj,jk) + zgrapoc |
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| 329 | consgoc(ji,jj,jk) = consgoc(ji,jj,jk) - zgrazffeg - zfracc |
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| 330 | tr(ji,jj,jk,jpgon,Krhs) = tr(ji,jj,jk,jpgon,Krhs) - zgrazffng + zgrapon - zfracn |
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| 331 | tr(ji,jj,jk,jpgop,Krhs) = tr(ji,jj,jk,jpgop,Krhs) - zgrazffpg + zgrapop - zfracp |
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| 332 | tr(ji,jj,jk,jpsfe,Krhs) = tr(ji,jj,jk,jpsfe,Krhs) - zgrazpof - zgrazfffp + zfracfe |
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| 333 | tr(ji,jj,jk,jpbfe,Krhs) = tr(ji,jj,jk,jpbfe,Krhs) - zgrazfffg + zgrapof - zfracfe |
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| 334 | zfracal = tr(ji,jj,jk,jpcal,Kbb) / ( tr(ji,jj,jk,jpgoc,Kbb) + rtrn ) |
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| 335 | zgrazcal = zgrazffeg * (1. - part2) * zfracal |
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[7162] | 336 | |
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[12377] | 337 | ! calcite production |
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| 338 | ! ------------------ |
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| 339 | zprcaca = xfracal(ji,jj,jk) * zgraznc |
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| 340 | prodcal(ji,jj,jk) = prodcal(ji,jj,jk) + zprcaca ! prodcal=prodcal(nanophy)+prodcal(microzoo)+prodcal(mesozoo) |
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| 341 | zprcaca = part2 * zprcaca |
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| 342 | tr(ji,jj,jk,jpdic,Krhs) = tr(ji,jj,jk,jpdic,Krhs) + zgrazcal - zprcaca |
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| 343 | tr(ji,jj,jk,jptal,Krhs) = tr(ji,jj,jk,jptal,Krhs) + 2. * ( zgrazcal - zprcaca ) |
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| 344 | tr(ji,jj,jk,jpcal,Krhs) = tr(ji,jj,jk,jpcal,Krhs) - zgrazcal + zprcaca |
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| 345 | END_3D |
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[7162] | 346 | ! |
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[12377] | 347 | IF( lk_iomput .AND. knt == nrdttrc ) THEN |
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| 348 | CALL iom_put( "PCAL" , prodcal(:,:,:) * 1.e+3 * rfact2r * tmask(:,:,:) ) ! Calcite production |
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| 349 | IF( iom_use("GRAZ2") ) THEN ! Total grazing of phyto by zooplankton |
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| 350 | zgrazing(:,:,jpk) = 0._wp ; CALL iom_put( "GRAZ2" , zgrazing(:,:,:) * 1.e+3 * rfact2r * tmask(:,:,:) ) |
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[7162] | 351 | ENDIF |
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[12276] | 352 | IF( iom_use("FEZOO2") ) THEN |
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| 353 | zfezoo2 (:,:,jpk) = 0._wp ; CALL iom_put( "FEZOO2", zfezoo2(:,:,:) * 1e9 * 1.e+3 * rfact2r * tmask(:,:,:) ) |
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[7162] | 354 | ENDIF |
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[12276] | 355 | IF( ln_ligand ) THEN |
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| 356 | zz2ligprod(:,:,jpk) = 0._wp ; CALL iom_put( "LPRODZ2", zz2ligprod(:,:,:) * 1e9 * 1.e+3 * rfact2r * tmask(:,:,:) ) |
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[10362] | 357 | ENDIF |
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[7162] | 358 | ENDIF |
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| 359 | ! |
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[12377] | 360 | IF(sn_cfctl%l_prttrc) THEN ! print mean trends (used for debugging) |
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[7162] | 361 | WRITE(charout, FMT="('meso')") |
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[13286] | 362 | CALL prt_ctl_info( charout, cdcomp = 'top' ) |
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[15648] | 363 | CALL prt_ctl(tab4d_1=CASTDP(tr(:,:,:,:,Krhs)), mask1=tmask, clinfo=ctrcnm) |
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[7162] | 364 | ENDIF |
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| 365 | ! |
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[9124] | 366 | IF( ln_timing ) CALL timing_stop('p5z_meso') |
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[7162] | 367 | ! |
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| 368 | END SUBROUTINE p5z_meso |
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| 369 | |
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[9124] | 370 | |
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[7162] | 371 | SUBROUTINE p5z_meso_init |
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| 372 | !!---------------------------------------------------------------------- |
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| 373 | !! *** ROUTINE p5z_meso_init *** |
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| 374 | !! |
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| 375 | !! ** Purpose : Initialization of mesozooplankton parameters |
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| 376 | !! |
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| 377 | !! ** Method : Read the nampismes namelist and check the parameters |
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| 378 | !! called at the first timestep (nittrc000) |
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| 379 | !! |
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| 380 | !! ** input : Namelist nampismes |
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| 381 | !! |
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| 382 | !!---------------------------------------------------------------------- |
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[9124] | 383 | INTEGER :: ios ! Local integer output status for namelist read |
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| 384 | !! |
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[10362] | 385 | NAMELIST/namp5zmes/part2, bmetexc2, grazrat2, resrat2, mzrat2, xpref2c, xpref2n, xpref2z, & |
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[7162] | 386 | & xpref2m, xpref2d, xthresh2dia, xthresh2phy, xthresh2zoo, xthresh2poc, & |
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[10362] | 387 | & xthresh2mes, xthresh2, xkgraz2, epsher2, epsher2min, ssigma2, unass2c, & |
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[9124] | 388 | & unass2n, unass2p, srespir2, grazflux |
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| 389 | !!---------------------------------------------------------------------- |
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| 390 | ! |
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[7162] | 391 | READ ( numnatp_ref, namp5zmes, IOSTAT = ios, ERR = 901) |
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[11536] | 392 | 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'nampismes in reference namelist' ) |
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[9124] | 393 | ! |
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[7162] | 394 | READ ( numnatp_cfg, namp5zmes, IOSTAT = ios, ERR = 902 ) |
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[11536] | 395 | 902 IF( ios > 0 ) CALL ctl_nam ( ios , 'nampismes in configuration namelist' ) |
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[7162] | 396 | IF(lwm) WRITE ( numonp, namp5zmes ) |
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[9124] | 397 | ! |
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[7162] | 398 | IF(lwp) THEN ! control print |
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| 399 | WRITE(numout,*) ' ' |
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| 400 | WRITE(numout,*) ' Namelist parameters for mesozooplankton, namp5zmes' |
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| 401 | WRITE(numout,*) ' ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~' |
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| 402 | WRITE(numout,*) ' part of calcite not dissolved in mesozoo guts part2 = ', part2 |
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[10362] | 403 | WRITE(numout,*) ' mesozoo preference for nano. xpref2n = ', xpref2n |
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[7162] | 404 | WRITE(numout,*) ' mesozoo preference for diatoms xpref2d = ', xpref2d |
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| 405 | WRITE(numout,*) ' mesozoo preference for zoo xpref2z = ', xpref2z |
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| 406 | WRITE(numout,*) ' mesozoo preference for mesozoo xpref2m = ', xpref2m |
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| 407 | WRITE(numout,*) ' mesozoo preference for poc xpref2c = ', xpref2c |
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| 408 | WRITE(numout,*) ' microzoo feeding threshold for mesozoo xthresh2zoo = ', xthresh2zoo |
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| 409 | WRITE(numout,*) ' diatoms feeding threshold for mesozoo xthresh2dia = ', xthresh2dia |
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| 410 | WRITE(numout,*) ' nanophyto feeding threshold for mesozoo xthresh2phy = ', xthresh2phy |
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| 411 | WRITE(numout,*) ' poc feeding threshold for mesozoo xthresh2poc = ', xthresh2poc |
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| 412 | WRITE(numout,*) ' mesozoo feeding threshold for mesozoo xthresh2mes = ', xthresh2mes |
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| 413 | WRITE(numout,*) ' feeding threshold for mesozooplankton xthresh2 = ', xthresh2 |
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| 414 | WRITE(numout,*) ' exsudation rate of mesozooplankton resrat2 = ', resrat2 |
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| 415 | WRITE(numout,*) ' mesozooplankton mortality rate mzrat2 = ', mzrat2 |
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| 416 | WRITE(numout,*) ' maximal mesozoo grazing rate grazrat2 = ', grazrat2 |
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| 417 | WRITE(numout,*) ' mesozoo flux feeding rate grazflux = ', grazflux |
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| 418 | WRITE(numout,*) ' C egested fraction of food by mesozoo unass2c = ', unass2c |
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[10362] | 419 | WRITE(numout,*) ' N egested fraction of food by mesozoo unass2n = ', unass2n |
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| 420 | WRITE(numout,*) ' P egested fraction of food by mesozoo unass2p = ', unass2p |
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[7162] | 421 | WRITE(numout,*) ' Efficicency of Mesozoo growth epsher2 = ', epsher2 |
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[10362] | 422 | WRITE(numout,*) ' Minimum Efficiency of Mesozoo growth epsher2min =', epsher2min |
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[7162] | 423 | WRITE(numout,*) ' Fraction excreted as semi-labile DOM ssigma2 = ', ssigma2 |
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| 424 | WRITE(numout,*) ' Active respiration srespir2 = ', srespir2 |
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| 425 | WRITE(numout,*) ' half sturation constant for grazing 2 xkgraz2 = ', xkgraz2 |
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| 426 | WRITE(numout,*) ' Use excess carbon for respiration bmetexc2 = ', bmetexc2 |
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| 427 | ENDIF |
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[9124] | 428 | ! |
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[7162] | 429 | END SUBROUTINE p5z_meso_init |
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| 430 | |
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| 431 | !!====================================================================== |
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[9788] | 432 | END MODULE p5zmeso |
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