[15480] | 1 | check_conservation: false |
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| 2 | require_initialization: true |
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| 3 | instances: |
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| 4 | zenithAngle: |
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| 5 | model: ersem/zenith_angle |
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| 6 | light: |
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| 7 | model: ersem/light_iop_ady |
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| 8 | parameters: |
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| 9 | a0w: 0.03 # absorption coefficient of clear water (1/m), default = 0.036 |
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| 10 | b0w: 0.0015 # backscatter coefficient of clear water (1/m), default = 0.0016 |
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| 11 | pEIR_eow: 0.5 # photosynthetically active fraction of shortwave radiation (-), default = 0.5 |
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| 12 | relax: 0.143 # relaxation towards satellite gelbstoff absorption (1/d), default=0.033 |
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| 13 | initialization: |
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| 14 | ADY: 0.05 |
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| 15 | N1: |
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| 16 | long_name: phosphate |
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| 17 | model: ersem/pelagic_base |
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| 18 | parameters: |
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| 19 | composition: p # elemental composition |
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| 20 | c0: 0.001 # background carbon concentration (mg C/m^3), default = 0.0 |
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| 21 | initialization: |
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| 22 | p: 0.4 # phosphorus (mmol P/m^3) |
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| 23 | N3: |
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| 24 | long_name: nitrate |
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| 25 | model: ersem/pelagic_base |
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| 26 | parameters: |
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| 27 | composition: n # elemental composition |
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| 28 | c0: 0.001 # background carbon concentration (mg C/m^3), default = 0.0 |
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| 29 | initialization: |
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| 30 | n: 8.0 # nitrogen (mmol N/m^3) |
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| 31 | N4: |
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| 32 | long_name: ammonium |
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| 33 | model: ersem/pelagic_base |
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| 34 | parameters: |
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| 35 | composition: n # elemental composition |
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| 36 | c0: 0.001 # background carbon concentration (mg C/m^3), default = 0.0 |
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| 37 | initialization: |
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| 38 | n: 0.1 # nitrogen (mmol N/m^3) |
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| 39 | N5: |
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| 40 | long_name: silicate |
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| 41 | model: ersem/pelagic_base |
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| 42 | parameters: |
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| 43 | composition: s # elemental composition |
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| 44 | s0: 0.0003 # background silicon concentration (mmol Si/m^3), default = 0.0 |
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| 45 | initialization: |
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| 46 | s: 4.5 # silicate (mmol Si/m^3) |
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| 47 | O2: |
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| 48 | long_name: oxygen |
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| 49 | model: ersem/oxygen |
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| 50 | parameters: |
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| 51 | ISWO2: 2 # saturation formulation (1: legacy ERSEM, 2: Weiss 1970) |
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| 52 | initialization: |
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| 53 | o: 300.0 # oxygen (mmol O_2/m^3) |
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| 54 | O3: |
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| 55 | long_name: carbonate |
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| 56 | model: ersem/carbonate |
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| 57 | parameters: |
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| 58 | iswCO2: 1 # carbonate system diagnostics (0: off, 1: on), default = 1 |
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| 59 | iswASFLUX: 1 # air-sea CO2 exchange (0: none, 1: Nightingale and Liss, 2: Wanninkhof 1992 without chemical enhancement, 3: Wanninkhof 1992 with chemical enhancement, 4: Wanninkhof 1999), default = 1 |
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| 60 | iswtalk: 2 # alkalinity formulation (1-4: from salinity and temperature, 5: dynamic alkalinity), default = 5 |
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| 61 | iswbioalk: 1 |
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| 62 | initialization: |
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| 63 | c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3) |
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| 64 | R1: |
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| 65 | long_name: labile dissolved organic matter |
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| 66 | model: ersem/pelagic_base |
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| 67 | parameters: |
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| 68 | composition: cnp # elemental composition |
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| 69 | c0: 0.0034 # background carbon concentration (mg C/m^3), default = 0.0 |
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| 70 | initialization: |
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| 71 | c: 10.0 # carbon (mg C/m^3) |
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| 72 | n: 0.14 # nitrogen (mmol N/m^3) |
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| 73 | p: 0.01 # phosphorus (mmol P/m^3) |
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| 74 | R2: |
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| 75 | long_name: semi-labile dissolved organic matter |
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| 76 | model: ersem/pelagic_base |
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| 77 | parameters: |
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| 78 | composition: c # elemental composition |
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| 79 | c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0 |
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| 80 | initialization: |
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| 81 | c: 12.0 # carbon (mg C/m^3) |
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| 82 | R3: |
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| 83 | long_name: semi-refractory dissolved organic matter |
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| 84 | model: ersem/pelagic_base |
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| 85 | parameters: |
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| 86 | composition: c # elemental composition |
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| 87 | c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0 |
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| 88 | initialization: |
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| 89 | c: 12.0 # carbon (mg C/m^3) |
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| 90 | R4: |
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| 91 | long_name: small-size pom |
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| 92 | model: ersem/pelagic_base |
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| 93 | parameters: |
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| 94 | composition: cnpf # elemental composition |
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| 95 | rm: 1.0 # sinking velocity (m/d), default = 0.0 |
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| 96 | ndeposition: 2 # number of target pools where the sedimentation flux goes (-) |
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| 97 | qxc2: 0.1 |
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| 98 | qxn2: 0.1 |
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| 99 | qxp2: 0.06 |
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| 100 | c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0 |
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| 101 | initialization: |
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| 102 | c: 7.2 # carbon (mg C/m^3) |
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| 103 | n: 0.1 # nitrogen (mmol N/m^3) |
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| 104 | p: 0.007 # phosphorus (mmol P/m^3) |
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| 105 | coupling: |
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| 106 | deposition_target1: Q6/surface |
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| 107 | deposition_target2: Q7/surface |
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| 108 | R6: |
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| 109 | long_name: medium-size pom |
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| 110 | model: ersem/pelagic_base |
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| 111 | parameters: |
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| 112 | composition: cnpsf # elemental composition |
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| 113 | rm: 5.0 # sinking velocity (m/d), default = 0.0 |
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| 114 | ndeposition: 2 # number of target pools where the sedimentation flux goes (-) |
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| 115 | qxc2: 0.1 |
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| 116 | qxn2: 0.1 |
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| 117 | qxp2: 0.06 |
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| 118 | qxs2: 0.0 |
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| 119 | c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0 |
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| 120 | initialization: |
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| 121 | c: 17.0 # carbon (mg C/m^3) |
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| 122 | n: 0.24 # nitrogen (mmol N/m^3) |
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| 123 | p: 0.02 # phosphorus (mmol P/m^3) |
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| 124 | s: 0.1 # silicate (mmol Si/m^3) |
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| 125 | coupling: |
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| 126 | deposition_target1: Q6/surface |
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| 127 | deposition_target2: Q7/surface |
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| 128 | R8: |
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| 129 | long_name: large-size pom |
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| 130 | model: ersem/pelagic_base |
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| 131 | parameters: |
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| 132 | composition: cnps # elemental composition |
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| 133 | rm: 10.0 # sinking velocity (m/d), default = 0.0 |
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| 134 | ndeposition: 2 # number of target pools where the sedimentation flux goes (-) |
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| 135 | qxc2: 0.1 |
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| 136 | qxn2: 0.1 |
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| 137 | qxp2: 0.06 |
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| 138 | qxs2: 0.0 |
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| 139 | c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0 |
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| 140 | initialization: |
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| 141 | c: 0.17 # carbon (mg C/m^3) |
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| 142 | n: 0.0024 # nitrogen (mmol N/m^3) |
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| 143 | p: 0.0002 # phosphorus (mmol P/m^3) |
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| 144 | s: 0.001 # silicate (mmol Si/m^3) |
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| 145 | coupling: |
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| 146 | deposition_target1: Q6/surface |
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| 147 | deposition_target2: Q7/surface |
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| 148 | Q1: |
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| 149 | long_name: benthic dissolved organic matter |
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| 150 | model: ersem/benthic_base |
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| 151 | parameters: |
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| 152 | composition: cnp # elemental composition |
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| 153 | c0: 0.001 # background carbon concentration (mg C/m^2) |
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| 154 | initialization: |
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| 155 | c: 18.9 # carbon (mg C/m^2) |
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| 156 | n: 0.6 # nitrogen (mmol N/m^2) |
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| 157 | p: 0.0035 # phosphorus (mmol P/m^2) |
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| 158 | Q6: |
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| 159 | long_name: benthic particulate organic matter |
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| 160 | model: ersem/benthic_column_particulate_matter |
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| 161 | parameters: |
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| 162 | composition: cnpsf # elemental composition |
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| 163 | resuspension: true # enable resuspension, default = false |
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| 164 | c0: 0.001 # background carbon concentration (mg C/m^2) |
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| 165 | initialization: |
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| 166 | c: 3052.0 # carbon (mg C/m^2) |
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| 167 | n: 3.5 # nitrogen (mmol N/m^2) |
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| 168 | p: 0.5 # phosphorus (mmol P/m^2) |
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| 169 | s: 149.0 # silicate (mmol Si/m^2) |
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| 170 | pen_depth_c: 0.0173 # penetration depth of carbon (m) |
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| 171 | pen_depth_n: 0.02 # penetration depth of nitrogen (m) |
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| 172 | pen_depth_p: 0.025 # penetration depth of phosphorus (m) |
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| 173 | pen_depth_s: 0.0313 # penetration depth of silicate (m) |
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| 174 | coupling: |
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| 175 | RP: R6 |
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| 176 | Q7: |
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| 177 | long_name: benthic refractory matter |
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| 178 | model: ersem/benthic_column_particulate_matter |
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| 179 | parameters: |
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| 180 | composition: cnp # elemental composition |
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| 181 | burial: true # enable burial, default = false |
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| 182 | c0: 0.001 # background carbon concentration (mg C/m^2) |
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| 183 | initialization: |
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| 184 | c: 30520.0 # carbon (mg C/m^2) |
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| 185 | n: 80.0 # nitrogen (mmol N/m^2) |
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| 186 | p: 8.0 # phosphorus (mmol P/m^2) |
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| 187 | pen_depth_c: 0.2 # penetration depth of carbon (m) |
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| 188 | pen_depth_n: 0.25 # penetration depth of nitrogen (m) |
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| 189 | pen_depth_p: 0.313 # penetration depth of phosphorus (m) |
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| 190 | coupling: |
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| 191 | burial_target: Q17 |
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| 192 | Q17: |
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| 193 | long_name: benthic buried matter |
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| 194 | model: ersem/benthic_base |
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| 195 | parameters: |
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| 196 | composition: cnp # elemental composition |
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| 197 | initialization: |
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| 198 | c: 0.0 # carbon (mg C/m^2) |
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| 199 | n: 0.0 # nitrogen (mmol N/m^2) |
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| 200 | p: 0.0 # phosphorus (mmol P/m^2) |
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| 201 | B1: |
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| 202 | long_name: bacteria |
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| 203 | model: ersem/bacteria_docdyn |
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| 204 | parameters: |
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| 205 | iswBlim: 2 # nutrient limitation (1: minimum of inorganic and organic availability, 2: additive availability) |
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| 206 | q10: 2.0 # Q_10 temperature coefficient (-) |
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| 207 | chdo: 0.31 # Michaelis-Menten constant for oxygen limitation (-) |
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| 208 | chn: 0.5 # Michaelis-Menten constant for nitrate limitation (mmol N/m^3) |
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| 209 | chp: 0.1 # Michaelis-Menten constant for phosphate limitation (mmol P/m^3) |
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| 210 | sd: 0.05 # specific mortality at reference temperature (1/d) |
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| 211 | sum: 2.2 # maximum specific uptake at reference temperature (1/d) |
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| 212 | pu: 0.6 # efficiency at high oxygen levels (-) |
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| 213 | puo: 0.2 # efficiency at low oxygen levels (-) |
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| 214 | srs: 0.1 # specific rest respiration at reference temperature (1/d) |
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| 215 | sR1: 1.0 # maximum turn-over rate of DOM (1/d), default = 1.0 |
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| 216 | qpc: 0.0019 # maximum phosphorus to carbon ratio (mmol P/mg C) |
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| 217 | qnc: 0.0167 # maximum nitrogen to carbon ratio (mmol N/mg C) |
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| 218 | ur_O2: 0.1 # oxygen consumed per carbon respired (mmol O_2/mg C) |
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| 219 | sR1N1: 0.0 # mineralisation rate of labile dissolved organic phosphorus (1/d) |
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| 220 | sR1N4: 0.0 # mineralisation rate of labile dissolved organic nitrogen (1/d) |
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| 221 | fsink: 7e-05 # scavenging rate for iron (1/d) |
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| 222 | c0: 0.01 # background carbon concentration (mg C/m^3) |
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| 223 | nRP: 3 # number of substrates, default = 0 |
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| 224 | sRP1R1: 0.01 # remineralisation of substrate 1 to DOM (1/d) |
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| 225 | sRP2R1: 0.0025 # remineralisation of substrate 2 to DOM (1/d) |
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| 226 | sRP3R1: 0.001 # remineralisation of substrate 3 to DOM (1/d) |
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| 227 | rR2: 0.0075 # fraction of semi-labile DOC available to bacteria (-) |
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| 228 | rR3: 0.0025 # fraction of semi-refractory DOC available to bacteria (-) |
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| 229 | frR3: 0.3 # fraction of activity respiration converted to semi-refractory DOC (-) |
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| 230 | initialization: |
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| 231 | c: 15.7 # carbon (mg C/m^3) |
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| 232 | n: 0.26 # nitrogen (mmol N/m^3) |
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| 233 | p: 0.029 # phosphorus (mmol P/m^3) |
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| 234 | coupling: |
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| 235 | RP1: R4 |
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| 236 | RP2: R6 |
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| 237 | RP3: R8 |
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| 238 | N1p: N1/p # phosphate (mmol P/m^3) |
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| 239 | N4n: N4/n # ammonium (mmol N/m^3) |
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| 240 | R1c: R1/c # labile dissolved organic carbon (mg C/m^3) |
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| 241 | R1p: R1/p # labile dissolved organic phosphorus (mmol P/m^3) |
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| 242 | R1n: R1/n # labile dissolved organic nitrogen (mmol N/m^3) |
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| 243 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
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| 244 | R3c: R3/c # semi-refractory DOC (mg C/m^3) |
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| 245 | O3c: O3/c # carbon dioxide (mmol C/m^3) |
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| 246 | O2o: O2/o # oxygen (mmol O_2/m^3) |
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| 247 | pel_nit: |
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| 248 | long_name: pelagic nitrification |
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| 249 | model: ersem/nitrification |
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| 250 | parameters: |
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| 251 | q10: 2.0 # Q_10 temperature coefficient (-) |
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| 252 | ISWph: 1 # pH impact on nitrification (0: off, 1: on) |
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| 253 | sN4N3: 0.5 # specific nitrification rate (1/d) |
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| 254 | chN3o: 2700.0 # Michaelis-Menten constant for cubic oxygen dependence of nitrification ((mmol O_2/m^3)^3) |
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| 255 | chN4n: 0.5 # Michaelis-Menten constant for cubic ammonium dependence of nitrification ((mmol N/m^3)^3), default = 0.0 |
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| 256 | coupling: |
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| 257 | N3n: N3/n # nitrate (mmol N/m^3) |
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| 258 | N4n: N4/n # ammonium (mmol N/m^3) |
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| 259 | O2o: O2/o # oxygen (mmol O_2/m^3) |
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| 260 | P1: |
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| 261 | long_name: diatoms |
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| 262 | model: ersem/primary_producer |
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| 263 | parameters: |
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| 264 | sum: 1.375 # maximum specific productivity at reference temperature (1/d) |
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| 265 | q10: 2.0 # Q_10 temperature coefficient (-) |
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| 266 | srs: 0.04 # specific rest respiration at reference temperature (1/d) |
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| 267 | pu_ea: 0.2 # excreted fraction of primary production (-) |
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| 268 | pu_ra: 0.2 # respired fraction of primary production (-) |
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| 269 | qnlc: 0.0042 # minimum nitrogen to carbon ratio (mmol N/mg C) |
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| 270 | qplc: 0.0001 # minimum phosphorus to carbon ratio (mmol P/mg C) |
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| 271 | xqcp: 1.0 # threshold for phosphorus limitation (relative to Redfield ratio) (-) |
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| 272 | xqcn: 1.0 # threshold for nitrogen limitation (relative to Redfield ratio) (-) |
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| 273 | xqp: 2.0 # maximum phosphorus to carbon ratio (relative to Redfield ratio) (-) |
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| 274 | xqn: 1.075 # maximum nitrogen to carbon ratio (relative to Redfield ratio) (-) |
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| 275 | qun3: 0.0025 # nitrate affinity (m^3/mg C/d) |
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| 276 | qun4: 0.0025 # ammonium affinity (m^3/mg C/d) |
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| 277 | qurp: 0.003 # phosphate affinity (m^3/mg C/d) |
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| 278 | snplux: 1.0 # specific tendency of luxury uptake of nutrients towards maximum quota (1/d), default = 1.0 |
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| 279 | use_Si: true # use silicate, default = false |
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| 280 | qsc: 0.0118 # maximum silicate to carbon ratio (mmol Si/mg C) |
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| 281 | chs: 0.2 # Michaelis-Menten constant for silicate limitation (mmol/m^3) |
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| 282 | sdo: 0.05 # 1.1 of minimal specific lysis rate (1/d) |
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| 283 | alpha: 4.0 # initial slope of PI-curve (mg C m^2/mg Chl/W/d) |
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| 284 | beta: 0.07 # photoinhibition parameter (mg C m^2/mg Chl/W/d) |
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| 285 | phim: 0.06 # maximum effective chlorophyll to carbon photosynthesis ratio (mg Chl/mg C) |
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| 286 | Limnut: 1 # nitrogen-phosphorus colimitation formulation (0: geometric mean, 1: minimum, 2: harmonic mean) |
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| 287 | docdyn: true # use dynamic ratio of labile to semi-labile DOM production, default = false |
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| 288 | uB1c_O2: 0.11 # oxygen produced per unit of carbon fixed (mmol O_2/mg C) |
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| 289 | urB1_O2: 0.1 # oxygen consumed per unit of carbon respired (mmol O_2/mg C) |
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| 290 | iopABS: 0.007 # specific shortwave absorption (m^2/mg Chl), default = 0.008 |
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| 291 | iopBBS: 0.00048 # specific shortwave backscatter (m^2/mg Chl), default = 0.003 |
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| 292 | c0: 0.0001 # background carbon concentration (mg C/m^3), default = 0.0 |
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| 293 | resm: 5.0 # maximum nutrient-limitation-induced sinking velocity (m/d), default = 0.0 |
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| 294 | esni: 0.7 # level of nutrient limitation below which sinking commences (-) |
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| 295 | cenh: false # enable atmospheric CO2 influence on photosynthesis, default = false |
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| 296 | ndeposition: 3 # number of target pools for sedimentation, default = 1 |
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| 297 | qxc2: 0.2 # fraction of carbon sinking into deposition target 2 (-) |
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| 298 | qxc3: 0.005 # fraction of carbon sinking into deposition target 3 (-) |
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| 299 | qxn2: 0.2 # fraction of nitrogen sinking into deposition target 2 (-) |
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| 300 | qxn3: 0.005 # fraction of nitrogen sinking into deposition target 3 (-) |
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| 301 | qxp2: 0.24 # fraction of phosphorus sinking into deposition target 2 (-) |
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| 302 | qxp3: 0.003 # fraction of phosphorus sinking into deposition target 3 (-) |
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| 303 | qxs2: 0.0 # fraction of silicate sinking into deposition target 2 (-) |
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| 304 | qxs3: 0.0 # fraction of silicate sinking into deposition target 3 (-) |
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| 305 | initialization: |
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| 306 | c: 8.0 # carbon (mg C/m^3) |
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| 307 | n: 0.1114 # nitrogen (mmol N/m^3) |
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| 308 | p: 0.009 # phosphorus (mmol P/m^3) |
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| 309 | s: 0.128 # silicate (mmol Si/m^3) |
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| 310 | Chl: 0.4 # chlorophyll a (mg/m^3) |
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| 311 | coupling: |
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| 312 | RP: R6 |
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| 313 | deposition_target1: Q6/surface |
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| 314 | deposition_target2: Q1 |
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| 315 | deposition_target3: Q7/surface |
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| 316 | N1p: N1/p # phosphate (mmol P/m^3) |
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| 317 | N3n: N3/n # nitrate (mmol N/m^3) |
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| 318 | N4n: N4/n # ammonium (mmol N/m^3) |
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| 319 | N5s: N5/s # silicate (mmol Si/m^3) |
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| 320 | R1c: R1/c # dissolved organic carbon (mg C/m^3) |
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| 321 | R1p: R1/p # dissolved organic phosphorus (mmol P/m^3) |
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| 322 | R1n: R1/n # dissolved organic nitrogen (mmol N/m^3) |
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| 323 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
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| 324 | O2o: O2/o # oxygen (mmol O_2/m^3) |
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| 325 | O3c: O3/c # carbon dioxide (mmol C/m^3) |
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| 326 | P2: |
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| 327 | long_name: nanophytoplankton |
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| 328 | model: ersem/primary_producer |
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| 329 | parameters: |
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| 330 | sum: 1.625 # maximum specific productivity at reference temperature (1/d) |
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| 331 | q10: 2.0 # Q_10 temperature coefficient (-) |
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| 332 | srs: 0.04 # specific rest respiration at reference temperature (1/d) |
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| 333 | pu_ea: 0.2 # excreted fraction of primary production (-) |
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| 334 | pu_ra: 0.2 # respired fraction of primary production (-) |
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| 335 | qnlc: 0.005 # minimum nitrogen to carbon ratio (mmol N/mg C) |
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| 336 | qplc: 0.000225 # minimum phosphorus to carbon ratio (mmol P/mg C) |
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| 337 | xqcp: 1.0 # threshold for phosphorus limitation (relative to Redfield ratio) (-) |
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| 338 | xqcn: 1.0 # threshold for nitrogen limitation (relative to Redfield ratio) (-) |
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| 339 | xqp: 2.0 # maximum phosphorus to carbon ratio (relative to Redfield ratio) (-) |
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| 340 | xqn: 1.075 # maximum nitrogen to carbon ratio (relative to Redfield ratio) (-) |
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| 341 | qun3: 0.004 # nitrate affinity (m^3/mg C/d) |
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| 342 | qun4: 0.004 # ammonium affinity (m^3/mg C/d) |
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| 343 | qurp: 0.004 # phosphate affinity (m^3/mg C/d) |
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| 344 | snplux: 1.0 # specific tendency of luxury uptake of nutrients towards maximum quota (1/d), default = 1.0 |
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| 345 | use_Si: false # use silicate, default = false |
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| 346 | sdo: 0.05 # 1.1 of minimal specific lysis rate (1/d) |
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| 347 | alpha: 5.0 # initial slope of PI-curve (mg C m^2/mg Chl/W/d) |
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| 348 | beta: 0.1 # photoinhibition parameter (mg C m^2/mg Chl/W/d) |
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| 349 | phim: 0.025 # maximum effective chlorophyll to carbon photosynthesis ratio (mg Chl/mg C) |
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| 350 | Limnut: 1 # nitrogen-phosphorus colimitation formulation (0: geometric mean, 1: minimum, 2: harmonic mean) |
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| 351 | docdyn: true # use dynamic ratio of labile to semi-labile DOM production, default = false |
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| 352 | uB1c_O2: 0.11 # oxygen produced per unit of carbon fixed (mmol O_2/mg C) |
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| 353 | urB1_O2: 0.1 # oxygen consumed per unit of carbon respired (mmol O_2/mg C) |
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| 354 | iopABS: 0.0041 # specific shortwave absorption (m^2/mg Chl), default = 0.008 |
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| 355 | iopBBS: 0.003 # specific shortwave backscatter (m^2/mg Chl), default = 0.003 |
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| 356 | c0: 0.001 # background carbon concentration (mg C/m^3), default = 0.0 |
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| 357 | calcify: true # calcify, default = false |
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| 358 | resm: 0.0 # maximum nutrient-limitation-induced sinking velocity (m/d), default = 0.0 |
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| 359 | esni: 0.7 # level of nutrient limitation below which sinking commences (-) |
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| 360 | cenh: false # enable atmospheric CO2 influence on photosynthesis, default = false |
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| 361 | ndeposition: 3 # number of target pools for sedimentation, default = 1 |
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| 362 | qxc2: 0.5 # fraction of carbon sinking into deposition target 2 (-) |
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| 363 | qxc3: 0.05 # fraction of carbon sinking into deposition target 3 (-) |
---|
| 364 | qxn2: 0.5 # fraction of nitrogen sinking into deposition target 2 (-) |
---|
| 365 | qxn3: 0.05 # fraction of nitrogen sinking into deposition target 3 (-) |
---|
| 366 | qxp2: 0.6 # fraction of phosphorus sinking into deposition target 2 (-) |
---|
| 367 | qxp3: 0.03 # fraction of phosphorus sinking into deposition target 3 (-) |
---|
| 368 | initialization: |
---|
| 369 | c: 5.9 # carbon (mg C/m^3) |
---|
| 370 | n: 0.0926 # nitrogen (mmol N/m^3) |
---|
| 371 | p: 0.0036 # phosphorus (mmol P/m^3) |
---|
| 372 | Chl: 0.3 # chlorophyll a (mg/m^3) |
---|
| 373 | coupling: |
---|
| 374 | RP: R4 |
---|
| 375 | deposition_target1: Q6/surface |
---|
| 376 | deposition_target2: Q1 |
---|
| 377 | deposition_target3: Q7/surface |
---|
| 378 | N1p: N1/p # phosphate (mmol P/m^3) |
---|
| 379 | N3n: N3/n # nitrate (mmol N/m^3) |
---|
| 380 | N4n: N4/n # ammonium (mmol N/m^3) |
---|
| 381 | R1c: R1/c # dissolved organic carbon (mg C/m^3) |
---|
| 382 | R1p: R1/p # dissolved organic phosphorus (mmol P/m^3) |
---|
| 383 | R1n: R1/n # dissolved organic nitrogen (mmol N/m^3) |
---|
| 384 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
---|
| 385 | O2o: O2/o # oxygen (mmol O_2/m^3) |
---|
| 386 | O3c: O3/c # carbon dioxide (mmol C/m^3) |
---|
| 387 | RainR: L2/RainR # rain ratio (PIC : POC) (-) |
---|
| 388 | L2c: L2/c # free calcite (mg C/m^3) |
---|
| 389 | P3: |
---|
| 390 | long_name: picophytoplankton |
---|
| 391 | model: ersem/primary_producer |
---|
| 392 | parameters: |
---|
| 393 | sum: 2.0 # maximum specific productivity at reference temperature (1/d) |
---|
| 394 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
| 395 | srs: 0.045 # specific rest respiration at reference temperature (1/d) |
---|
| 396 | pu_ea: 0.2 # excreted fraction of primary production (-) |
---|
| 397 | pu_ra: 0.2 # respired fraction of primary production (-) |
---|
| 398 | qnlc: 0.006 # minimum nitrogen to carbon ratio (mmol N/mg C) |
---|
| 399 | qplc: 0.00035 # minimum phosphorus to carbon ratio (mmol P/mg C) |
---|
| 400 | xqcp: 1.0 # threshold for phosphorus limitation (relative to Redfield ratio) (-) |
---|
| 401 | xqcn: 1.0 # threshold for nitrogen limitation (relative to Redfield ratio) (-) |
---|
| 402 | xqp: 1.5 # maximum phosphorus to carbon ratio (relative to Redfield ratio) (-) |
---|
| 403 | xqn: 1.05 # maximum nitrogen to carbon ratio (relative to Redfield ratio) (-) |
---|
| 404 | qun3: 0.006 # nitrate affinity (m^3/mg C/d) |
---|
| 405 | qun4: 0.007 # ammonium affinity (m^3/mg C/d) |
---|
| 406 | qurp: 0.006 # phosphate affinity (m^3/mg C/d) |
---|
| 407 | snplux: 1.0 # specific tendency of luxuary uptake of nutrients towards maximum quoata (1/d) |
---|
| 408 | use_Si: false # use silicate, default = false |
---|
| 409 | sdo: 0.055 # 1.1 of minimal specific lysis rate (1/d) |
---|
| 410 | alpha: 6.0 # initial slope of PI-curve (mg C m^2/mg Chl/W/d) |
---|
| 411 | beta: 0.12 # photoinhibition parameter (mg C m^2/mg Chl/W/d) |
---|
| 412 | phim: 0.015 # maximum effective chlorophyll to carbon photosynthesis ratio (mg Chl/mg C) |
---|
| 413 | Limnut: 1 # nitrogen-phosphorus colimitation formulation (0: geometric mean, 1: minimum, 2: harmonic mean) |
---|
| 414 | docdyn: true # use dynamic ratio of labile to semi-labile DOM production, default = false |
---|
| 415 | uB1c_O2: 0.11 # oxygen produced per unit of carbon fixed (mmol O_2/mg C) |
---|
| 416 | urB1_O2: 0.1 # oxygen consumed per unit of carbon respired (mmol O_2/mg C) |
---|
| 417 | iopABS: 0.023 # specific shortwave absorption (m^2/mg Chl), default = 0.008 |
---|
| 418 | iopBBS: 0.003 # specific shortwave backscatter (m^2/mg Chl), default = 0.003 |
---|
| 419 | c0: 0.0088 # background carbon concentration (mg C/m^3), default = 0.0 |
---|
| 420 | resm: 0.0 # maximum nutrient-limitation-induced sinking velocity (m/d), default = 0.0 |
---|
| 421 | esni: 0.7 # level of nutrient limitation below which sinking commences (-) |
---|
| 422 | cenh: false # enable atmospheric CO2 influence on photosynthesis, default = false |
---|
| 423 | ndeposition: 3 # number of target pools for sedimentation, default = 1 |
---|
| 424 | qxc2: 0.5 # fraction of carbon sinking into deposition target 2 (-) |
---|
| 425 | qxc3: 0.05 # fraction of carbon sinking into deposition target 3 (-) |
---|
| 426 | qxn2: 0.5 # fraction of nitrogen sinking into deposition target 2 (-) |
---|
| 427 | qxn3: 0.05 # fraction of nitrogen sinking into deposition target 3 (-) |
---|
| 428 | qxp2: 0.6 # fraction of phosphorus sinking into deposition target 2 (-) |
---|
| 429 | qxp3: 0.03 # fraction of phosphorus sinking into deposition target 3 (-) |
---|
| 430 | initialization: |
---|
| 431 | c: 5.9 # carbon (mg C/m^3) |
---|
| 432 | n: 0.0926 # nitrogen (mmol N/m^3) |
---|
| 433 | p: 0.0036 # phosphorus (mmol P/m^3) |
---|
| 434 | Chl: 0.3 # chlorophyll a (mg/m^3) |
---|
| 435 | coupling: |
---|
| 436 | RP: R4 |
---|
| 437 | deposition_target1: Q6/surface |
---|
| 438 | deposition_target2: Q1 |
---|
| 439 | deposition_target3: Q7/surface |
---|
| 440 | N1p: N1/p # phosphate (mmol P/m^3) |
---|
| 441 | N3n: N3/n # nitrate (mmol N/m^3) |
---|
| 442 | N4n: N4/n # ammonium (mmol N/m^3) |
---|
| 443 | R1c: R1/c # dissolved organic carbon (mg C/m^3) |
---|
| 444 | R1p: R1/p # dissolved organic phosphorus (mmol P/m^3) |
---|
| 445 | R1n: R1/n # dissolved organic nitrogen (mmol N/m^3) |
---|
| 446 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
---|
| 447 | O2o: O2/o # oxygen (mmol O_2/m^3) |
---|
| 448 | O3c: O3/c # carbon dioxide (mmol C/m^3) |
---|
| 449 | P4: |
---|
| 450 | long_name: microphytoplankton |
---|
| 451 | model: ersem/primary_producer |
---|
| 452 | parameters: |
---|
| 453 | sum: 1.125 # maximum specific productivity at reference temperature (1/d) |
---|
| 454 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
| 455 | srs: 0.035 # specific rest respiration at reference temperature (1/d) |
---|
| 456 | pu_ea: 0.2 # excreted fraction of primary production (-) |
---|
| 457 | pu_ra: 0.2 # respired fraction of primary production (-) |
---|
| 458 | qnlc: 0.0042 # minimum nitrogen to carbon ratio (mmol N/mg C) |
---|
| 459 | qplc: 0.0001 # minimum phosphorus to carbon ratio (mmol P/mg C) |
---|
| 460 | xqcp: 1.0 # threshold for phosphorus limitation (relative to Redfield ratio) (-) |
---|
| 461 | xqcn: 1.0 # threshold for nitrogen limitation (relative to Redfield ratio) (-) |
---|
| 462 | xqp: 2.7 # maximum phosphorus to carbon ratio (relative to Redfield ratio) (-) |
---|
| 463 | xqn: 1.1 # maximum nitrogen to carbon ratio (relative to Redfield ratio) (-) |
---|
| 464 | qun3: 0.002 # nitrate affinity (m^3/mg C/d) |
---|
| 465 | qun4: 0.002 # ammonium affinity (m^3/mg C/d) |
---|
| 466 | qurp: 0.002 # phosphate affinity (m^3/mg C/d) |
---|
| 467 | snplux: 1.0 # specific tendency of luxuary uptake of nutrients towards maximum quoata (1/d) |
---|
| 468 | use_Si: false # use silicate, default = false |
---|
| 469 | sdo: 0.045 # 1.1 of minimal specific lysis rate (1/d) |
---|
| 470 | alpha: 3.0 # initial slope of PI-curve (mg C m^2/mg Chl/W/d) |
---|
| 471 | beta: 0.06 # photoinhibition parameter (mg C m^2/mg Chl/W/d) |
---|
| 472 | phim: 0.045 # maximum effective chlorophyll to carbon photosynthesis ratio (mg Chl/mg C) |
---|
| 473 | Limnut: 1 # nitrogen-phosphorus colimitation formulation (0: geometric mean, 1: minimum, 2: harmonic mean) |
---|
| 474 | docdyn: true # use dynamic ratio of labile to semi-labile DOM production, default = false |
---|
| 475 | uB1c_O2: 0.11 # oxygen produced per unit of carbon fixed (mmol O_2/mg C) |
---|
| 476 | urB1_O2: 0.1 # oxygen consumed per unit of carbon respired (mmol O_2/mg C) |
---|
| 477 | iopABS: 0.008 # specific shortwave absorption (m^2/mg Chl), default = 0.008 |
---|
| 478 | iopBBS: 0.00048 # specific shortwave backscatter (m^2/mg Chl), default = 0.003 |
---|
| 479 | c0: 0.0001 # background carbon concentration (mg C/m^3), default = 0.0 |
---|
| 480 | resm: 5.0 # maximum nutrient-limitation-induced sinking velocity (m/d), default = 0.0 |
---|
| 481 | esni: 0.7 # level of nutrient limitation below which sinking commences (-) |
---|
| 482 | cenh: false # enable atmospheric CO2 influence on photosynthesis, default = false |
---|
| 483 | ndeposition: 3 # number of target pools for sedimentation, default = 1 |
---|
| 484 | qxc2: 0.5 # fraction of carbon sinking into deposition target 2 (-) |
---|
| 485 | qxc3: 0.05 # fraction of carbon sinking into deposition target 3 (-) |
---|
| 486 | qxn2: 0.5 # fraction of nitrogen sinking into deposition target 2 (-) |
---|
| 487 | qxn3: 0.05 # fraction of nitrogen sinking into deposition target 3 (-) |
---|
| 488 | qxp2: 0.6 # fraction of phosphorus sinking into deposition target 2 (-) |
---|
| 489 | qxp3: 0.03 # fraction of phosphorus sinking into deposition target 3 (-) |
---|
| 490 | initialization: |
---|
| 491 | c: 5.9 # carbon (mg C/m^3) |
---|
| 492 | n: 0.0926 # nitrogen (mmol N/m^3) |
---|
| 493 | p: 0.0036 # phosphorus (mmol P/m^3) |
---|
| 494 | Chl: 0.3 # chlorophyll a (mg/m^3) |
---|
| 495 | coupling: |
---|
| 496 | RP: R6 |
---|
| 497 | deposition_target1: Q6/surface |
---|
| 498 | deposition_target2: Q1 |
---|
| 499 | deposition_target3: Q7/surface |
---|
| 500 | N1p: N1/p # phosphate (mmol P/m^3) |
---|
| 501 | N3n: N3/n # nitrate (mmol N/m^3) |
---|
| 502 | N4n: N4/n # ammonium (mmol N/m^3) |
---|
| 503 | R1c: R1/c # dissolved organic carbon (mg C/m^3) |
---|
| 504 | R1p: R1/p # dissolved organic phosphorus (mmol P/m^3) |
---|
| 505 | R1n: R1/n # dissolved organic nitrogen (mmol N/m^3) |
---|
| 506 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
---|
| 507 | O2o: O2/o # oxygen (mmol O_2/m^3) |
---|
| 508 | O3c: O3/c # carbon dioxide (mmol C/m^3) |
---|
| 509 | Z4: |
---|
| 510 | long_name: mesozooplankton |
---|
| 511 | model: ersem/mesozooplankton |
---|
| 512 | parameters: |
---|
| 513 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
| 514 | minfood: 12.0 # Michaelis-Menten constant to perceive food (mg C/m^3) |
---|
| 515 | chuc: 36.0 # Michaelis-Menten constant for food uptake (mg C/m^3) |
---|
| 516 | sum: 1.0 # maximum specific uptake at reference temperature (1/d) |
---|
| 517 | pu: 0.6 # assimilation efficiency (-) |
---|
| 518 | pu_ea: 0.5 # fraction of unassimilated prey that is excreted (not respired) (-) |
---|
| 519 | pu_eaR: 0.9 # fraction of unassimilated detritus that is excreted (not respired) (-) |
---|
| 520 | pe_R1: 0.5 # dissolved fraction of excreted/dying matter (-) |
---|
| 521 | srs: 0.015 # specific rest respiration at reference temperature (1/d) |
---|
| 522 | sd: 0.05 # basal mortality (1/d) |
---|
| 523 | sdo: 0.2 # maximum mortality due to oxygen limitation (1/d) |
---|
| 524 | chro: 7.81 # Michaelis-Menten constant for oxygen limitation (-) |
---|
| 525 | qpc: 0.000786 # phosphorus to carbon ratio (mmol P/mg C) |
---|
| 526 | qnc: 0.0126 # nitrogen to carbon ratio (mmol N/mg C) |
---|
| 527 | Minprey: 300.0 # food threshold for overwintering state (mg C/m^2) |
---|
| 528 | repw: 0.0025 # specific overwintering respiration (1/d) |
---|
| 529 | mort: 0.0025 # specific overwintering mortality (1/d) |
---|
| 530 | R1R2: 1.0 # labile fraction of produced dissolved organic carbon (-) |
---|
| 531 | xR1p: 1.2 # transfer of phosphorus to DOM, relative to POM (-), default = 0.0 |
---|
| 532 | xR1n: 1.0 # transfer of nitrogen to DOM, relative to POM (-), default = 0.0 |
---|
| 533 | urB1_O2: 0.1 # oxygen consumed per carbon respired (mmol O_2/mg C) |
---|
| 534 | gutdiss: 0.5 # fraction of prey calcite that dissolves after ingestion (-) |
---|
| 535 | c0: 0.0033 # background concentration (mg C/m^3) |
---|
| 536 | nprey: 9 # number of prey types, default = 0 |
---|
| 537 | suprey1: 0.15 # relative affinity for prey type 1 (-) |
---|
| 538 | suprey2: 0.05 # relative affinity for prey type 2 (-) |
---|
| 539 | suprey3: 0.0 # relative affinity for prey type 3 (-) |
---|
| 540 | suprey4: 0.15 # relative affinity for prey type 4 (-) |
---|
| 541 | suprey5: 0.25 # relative affinity for prey type 5 (-) |
---|
| 542 | suprey6: 0.25 # relative affinity for prey type 6 (-) |
---|
| 543 | suprey7: 0.05 # relative affinity for prey type 7 (-) |
---|
| 544 | suprey8: 0.0 # relative affinity for prey type 8 (-) |
---|
| 545 | suprey9: 0.1 # relative affinity for prey type 9 (-) |
---|
| 546 | prey9ispom: true # prey type 9 is detritus, default = false |
---|
| 547 | initialization: |
---|
| 548 | c: 1.2 # carbon (mg C/m^3) |
---|
| 549 | coupling: |
---|
| 550 | prey1: P1 |
---|
| 551 | prey2: P2 |
---|
| 552 | prey3: P3 |
---|
| 553 | prey4: P4 |
---|
| 554 | prey5: Z4 |
---|
| 555 | prey6: Z5 |
---|
| 556 | prey7: Z6 |
---|
| 557 | prey8: B1 |
---|
| 558 | prey9: R6 |
---|
| 559 | RP: R8 |
---|
| 560 | N1p: N1/p # phosphate (mmol P/m^3) |
---|
| 561 | N4n: N4/n # ammonium (mmol N/m^3) |
---|
| 562 | R1c: R1/c # dissolved organic carbon (mg C/m^3) |
---|
| 563 | R1p: R1/p # dissolved organic phosphorus (mmol P/m^3) |
---|
| 564 | R1n: R1/n # dissolved organic nitrogen (mmol N/m^3) |
---|
| 565 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
---|
| 566 | O2o: O2/o # oxygen source (mmol O_2/m^3) |
---|
| 567 | O3c: O3/c # carbon dioxide sink (mmol C/m^3) |
---|
| 568 | L2c: L2/c # calcite (mg C/m^3) |
---|
| 569 | Z5: |
---|
| 570 | long_name: microzooplankton |
---|
| 571 | model: ersem/microzooplankton |
---|
| 572 | parameters: |
---|
| 573 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
| 574 | minfood: 12.0 # Michaelis-Menten constant to perceive food (mg C/m^3) |
---|
| 575 | chuc: 32.0 # Michaelis-Menten constant for food uptake (mg C/m^3) |
---|
| 576 | sum: 1.25 # maximum specific uptake at reference temperature (1/d) |
---|
| 577 | pu: 0.5 # assimilation efficiency (-) |
---|
| 578 | pu_ea: 0.5 # fraction of unassimilated prey that is excreted (not respired) (-) |
---|
| 579 | pe_R1: 0.5 # dissolved fraction of excreted/dying matter (-) |
---|
| 580 | srs: 0.02 # specific rest respiration at reference temperature (1/d) |
---|
| 581 | sd: 0.05 # basal mortality (1/d) |
---|
| 582 | sdo: 0.25 # maximum mortality due to oxygen limitation (1/d) |
---|
| 583 | chro: 7.81 # Michaelis-Menten constant for oxygen limitation (-) |
---|
| 584 | qpc: 0.001 # maximum phosphorus to carbon ratio (mmol P/mg C) |
---|
| 585 | qnc: 0.0167 # maximum nitrogen to carbon ratio (mmol N/mg C) |
---|
| 586 | stempp: 0.5 # specific excretion rate of excess phosphorus (1/d) |
---|
| 587 | stempn: 0.5 # specific excretion rate of excess nitrogen (1/d) |
---|
| 588 | R1R2: 1.0 # labile fraction of produced dissolved organic carbon (-) |
---|
| 589 | xR1p: 1.2 # transfer of phosphorus to DOM, relative to POM (-), default = 1.0 |
---|
| 590 | xR1n: 1.0 # transfer of nitrogen to DOM, relative to POM (-), default = 1.0 |
---|
| 591 | urB1_O2: 0.1 # oxygen consumed per carbon respired (mmol O_2/mg C) |
---|
| 592 | gutdiss: 0.5 # fraction of prey calcite that dissolves after ingestion (-) |
---|
| 593 | c0: 0.0033 # background concentration (mg C/m^3) |
---|
| 594 | nprey: 7 # number of prey types, default = 0 |
---|
| 595 | suprey1: 0.1 # relative affinity for prey type 1 (-) |
---|
| 596 | suprey2: 0.15 # relative affinity for prey type 2 (-) |
---|
| 597 | suprey3: 0.15 # relative affinity for prey type 3 (-) |
---|
| 598 | suprey4: 0.15 # relative affinity for prey type 4 (-) |
---|
| 599 | suprey5: 0.1 # relative affinity for prey type 5 (-) |
---|
| 600 | suprey6: 0.15 # relative affinity for prey type 6 (-) |
---|
| 601 | suprey7: 0.2 # relative affinity for prey type 7 (-) |
---|
| 602 | initialization: |
---|
| 603 | c: 7.2 # carbon (mg C/m^3) |
---|
| 604 | n: 0.12 # nitrogen (mmol N/m^3) |
---|
| 605 | p: 0.0113 # phosphorus (mmol P/m^3) |
---|
| 606 | coupling: |
---|
| 607 | prey1: B1 |
---|
| 608 | prey2: P1 |
---|
| 609 | prey3: P2 |
---|
| 610 | prey4: P3 |
---|
| 611 | prey5: P4 |
---|
| 612 | prey6: Z5 |
---|
| 613 | prey7: Z6 |
---|
| 614 | RP: R6 |
---|
| 615 | N1p: N1/p # phosphate (mmol P/m^3) |
---|
| 616 | N4n: N4/n # ammonium (mmol N/m^3) |
---|
| 617 | R1c: R1/c # dissolved organic carbon (mg C/m^3) |
---|
| 618 | R1p: R1/p # dissolved organic phosphorus (mmol P/m^3) |
---|
| 619 | R1n: R1/n # dissolved organic nitrogen (mmol N/m^3) |
---|
| 620 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
---|
| 621 | O2o: O2/o # oxygen source (mmol O_2/m^3) |
---|
| 622 | O3c: O3/c # carbon dioxide sink (mmol C/m^3) |
---|
| 623 | L2c: L2/c # calcite (mg C/m^3) |
---|
| 624 | Z6: |
---|
| 625 | long_name: nanoflagellates |
---|
| 626 | model: ersem/microzooplankton |
---|
| 627 | parameters: |
---|
| 628 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
| 629 | minfood: 12.0 # Michaelis-Menten constant to perceive food (mg C/m^3) |
---|
| 630 | chuc: 28.0 # Michaelis-Menten constant for food uptake (mg C/m^3) |
---|
| 631 | sum: 1.5 # maximum specific uptake at reference temperature (1/d) |
---|
| 632 | pu: 0.4 # assimilation efficiency (-) |
---|
| 633 | pu_ea: 0.5 # fraction of unassimilated prey that is excreted (not respired) (-) |
---|
| 634 | pe_R1: 0.5 # dissolved fraction of excreted/dying matter (-) |
---|
| 635 | srs: 0.025 # specific rest respiration at reference temperature (1/d) |
---|
| 636 | sd: 0.05 # basal mortality (1/d) |
---|
| 637 | sdo: 0.3 # maximum mortality due to oxygen limitation (1/d) |
---|
| 638 | chro: 7.81 # Michaelis-Menten constant for oxygen limitation (-) |
---|
| 639 | qpc: 0.001 # maximum phosphorus to carbon ratio (mmol P/mg C) |
---|
| 640 | qnc: 0.0167 # maximum nitrogen to carbon ratio (mmol N/mg C) |
---|
| 641 | stempp: 0.5 # specific excretion rate of excess phosphorus (1/d) |
---|
| 642 | stempn: 0.5 # specific excretion rate of excess nitrogen (1/d) |
---|
| 643 | R1R2: 1.0 # labile fraction of produced dissolved organic carbon (-) |
---|
| 644 | xR1p: 1.2 # transfer of phosphorus to DOM, relative to POM (-), default = 1.0 |
---|
| 645 | xR1n: 1.0 # transfer of nitrogen to DOM, relative to POM (-), default = 1.0 |
---|
| 646 | urB1_O2: 0.1 # oxygen consumed per carbon respired (mmol O_2/mg C) |
---|
| 647 | gutdiss: 0.5 # fraction of prey calcite that dissolves after ingestion (-) |
---|
| 648 | c0: 0.0033 # background concentration (mg C/m^3) |
---|
| 649 | nprey: 4 # number of prey types, default = 0 |
---|
| 650 | suprey1: 0.45 # relative affinity for prey type 1 (-) |
---|
| 651 | suprey2: 0.15 # relative affinity for prey type 2 (-) |
---|
| 652 | suprey3: 0.25 # relative affinity for prey type 3 (-) |
---|
| 653 | suprey4: 0.15 # relative affinity for prey type 4 (-) |
---|
| 654 | initialization: |
---|
| 655 | c: 2.421 # carbon (mg C/m^3) |
---|
| 656 | n: 0.0505 # nitrogen (mmol N/m^3) |
---|
| 657 | p: 0.047 # phosphorus (mmol P/m^3) |
---|
| 658 | coupling: |
---|
| 659 | prey1: B1 |
---|
| 660 | prey2: P2 |
---|
| 661 | prey3: P3 |
---|
| 662 | prey4: Z6 |
---|
| 663 | RP: R4 |
---|
| 664 | N1p: N1/p # phosphate (mmol P/m^3) |
---|
| 665 | N4n: N4/n # ammonium (mmol N/m^3) |
---|
| 666 | R1c: R1/c # dissolved organic carbon (mg C/m^3) |
---|
| 667 | R1p: R1/p # dissolved organic phosphorus (mmol P/m^3) |
---|
| 668 | R1n: R1/n # dissolved organic nitrogen (mmol N/m^3) |
---|
| 669 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
---|
| 670 | RPs: R6/s # particulate organic silicate (mmol Si/m^3) |
---|
| 671 | O2o: O2/o # oxygen source (mmol O_2/m^3) |
---|
| 672 | O3c: O3/c # carbon dioxide sink (mmol C/m^3) |
---|
| 673 | L2c: L2/c # calcite (mg C/m^3) |
---|
| 674 | L2: |
---|
| 675 | long_name: calcite |
---|
| 676 | model: ersem/calcification |
---|
| 677 | parameters: |
---|
| 678 | iswcal: 1 # calcification/dissolution dependence on calcite saturation (1: power law, 2: hyperbolic) |
---|
| 679 | ncalc: 0.81 # power of the calcification law (Ridgwell et al. 2007, mineral calcite) (-) |
---|
| 680 | ndiss: 2.22 # power of the dissolution law (Keir 1980) (-) |
---|
| 681 | Rain0: 0.6 # maximum rain ratio from PISCES (-) |
---|
| 682 | sedL2: 10.0 # sinking velocity (m/d) |
---|
| 683 | sL2O3: 0.03 # maximum specific dissolution rate (1/d), default = 1.0 |
---|
| 684 | c0: 1e-05 # background concentration (mg C/m^3), default = 0.0 |
---|
| 685 | ndeposition: 1 # number of target pools for sedimentation, default = 1 |
---|
| 686 | initialization: |
---|
| 687 | c: 0.05 # carbon (mg C/m^3) |
---|
| 688 | coupling: |
---|
| 689 | deposition_target1: bL2 |
---|
| 690 | om_cal: O3/Om_cal # calcite saturation (-) |
---|
| 691 | O3c: O3/c # total dissolved inorganic carbon (mmol C/m^3) |
---|
| 692 | bL2: |
---|
| 693 | long_name: benthic calcite |
---|
| 694 | model: ersem/benthic_calcite |
---|
| 695 | parameters: |
---|
| 696 | iswcal: 1 # dissolution dependence on calcite saturation (0: none, 1: power law, 2: hyperbolic) |
---|
| 697 | ndiss: 2.22 # power of the dissolution law (Keir 1980) (-) |
---|
| 698 | fdissmax: 30.0 # maximum specific dissolution rate (1/d), default = 0.0 |
---|
| 699 | fdissmin: 0.05 # minimum specific dissolution rate (1/d), default = 0.03 |
---|
| 700 | c0: 1e-05 # background calcite concentration (mg C/m^2), default = 0.0 |
---|
| 701 | initialization: |
---|
| 702 | c: 0.05 # carbon (mg C/m^2) |
---|
| 703 | coupling: |
---|
| 704 | Om_Cal: O3/Om_cal # calcite saturation (-) |
---|
| 705 | O3c: O3/c # dissolved inorganic carbon (mmol/m^3) |
---|
| 706 | ben_col: |
---|
| 707 | long_name: benthic column |
---|
| 708 | model: ersem/benthic_column |
---|
| 709 | parameters: |
---|
| 710 | qPW: 0.4 # sediment porosity (-) |
---|
| 711 | EDZ_mix: 20.0 # equilibrium diffusive speed between sediment surface water (d/m) |
---|
| 712 | d_tot: 0.3 # depth of sediment column (m) |
---|
| 713 | Etur: 2e-06 # basal bioturbation rate (m^2/d) |
---|
| 714 | mtur: 10.0 # maximum relative turbation enhancement (-) |
---|
| 715 | htur: 116.0 # Michaelis-Menten constant for bioturbation (mg C/m^2/d) |
---|
| 716 | dtur: 0.02 # bioturbation depth (m) |
---|
| 717 | EDZ_1: 5e-05 # diffusivity in oxygenated layer (m^2/d) |
---|
| 718 | EDZ_2: 5e-05 # diffusivity in oxidized layer (m^2/d) |
---|
| 719 | EDZ_3: 5e-05 # diffusivity in anoxic layer (m^2/d) |
---|
| 720 | irr_min: 2.0 # minimum diffusion enhancement through bioirrigation (-) |
---|
| 721 | mirr: 10.0 # maximum relative diffusion enhancement due to bioirrigation (-) |
---|
| 722 | hirr: 101.0 # Michaelis-Menten constant for bioirrigation (mg C/m^2/d) |
---|
| 723 | initialization: |
---|
| 724 | D1m: 0.009 # depth of bottom interface of oxygenated layer (m) |
---|
| 725 | D2m: 0.05 # depth of bottom interface of oxidized layer (m) |
---|
| 726 | K1: |
---|
| 727 | long_name: benthic phosphate |
---|
| 728 | model: ersem/benthic_column_dissolved_matter |
---|
| 729 | parameters: |
---|
| 730 | composition: p # composition (any combination of c,n,p,s,o,a) |
---|
| 731 | ads1: 100.0 # adsorption in layer 1 (total:dissolved) (-), default = 1.0 |
---|
| 732 | ads2: 100.0 # adsorption in layer 2 (total:dissolved) (-), default = 1.0 |
---|
| 733 | ads3: 2.0 # adsorption in layer 3 (total:dissolved) (-), default = 1.0 |
---|
| 734 | c0: 0.0003 # background concentration (mg C/m^2) |
---|
| 735 | initialization: |
---|
| 736 | p: 6.8 # phosphorus (mmol/m^2) |
---|
| 737 | coupling: |
---|
| 738 | p_pel: N1/p # pelagic phosphorus (mmol/m^3) |
---|
| 739 | K3: |
---|
| 740 | long_name: benthic nitrate |
---|
| 741 | model: ersem/benthic_column_dissolved_matter |
---|
| 742 | parameters: |
---|
| 743 | composition: n # composition (any combination of c,n,p,s,o,a) |
---|
| 744 | last_layer: 2 # sediment layer where concentration drops to zero, default = 3 |
---|
| 745 | relax: 5.0 # rate of relaxation towards equilibrium concentration profile (1/d) |
---|
| 746 | minD: 0.0001 # minimum depth of zero-concentration isocline (m) |
---|
| 747 | c0: 0.0003 # background concentration (mg C/m^2) |
---|
| 748 | initialization: |
---|
| 749 | n: 0.584 # nitrogen (mmol/m^2) |
---|
| 750 | coupling: |
---|
| 751 | n_pel: N3/n # pelagic nitrogen (mmol/m^3) |
---|
| 752 | K4: |
---|
| 753 | long_name: benthic ammonium |
---|
| 754 | model: ersem/benthic_column_dissolved_matter |
---|
| 755 | parameters: |
---|
| 756 | composition: n # composition (any combination of c,n,p,s,o,a) |
---|
| 757 | ads1: 3.0 # adsorption in layer 1 (total:dissolved) (-), default = 1.0 |
---|
| 758 | ads2: 3.0 # adsorption in layer 2 (total:dissolved) (-), default = 1.0 |
---|
| 759 | ads3: 3.0 # adsorption in layer 3 (total:dissolved) (-), default = 1.0 |
---|
| 760 | correction: true # move losses in oxygenic layer to deeper layers if pelagic concentration is limiting, default = false |
---|
| 761 | c0: 0.0003 # background concentration (mg C/m^2) |
---|
| 762 | initialization: |
---|
| 763 | n: 25.0 # nitrogen (mmol/m^2) |
---|
| 764 | coupling: |
---|
| 765 | n_pel: N4/n # pelagic nitrogen (mmol/m^3) |
---|
| 766 | K5: |
---|
| 767 | long_name: benthic silicate |
---|
| 768 | model: ersem/benthic_column_dissolved_matter |
---|
| 769 | parameters: |
---|
| 770 | composition: s # composition (any combination of c,n,p,s,o,a) |
---|
| 771 | c0: 9.e-05 # background concentration (mg C/m^2) |
---|
| 772 | initialization: |
---|
| 773 | s: 20.1 # silicate (mmol/m^2) |
---|
| 774 | coupling: |
---|
| 775 | s_pel: N5/s # pelagic silicate (mmol/m^3) |
---|
| 776 | G2: |
---|
| 777 | long_name: benthic oxygen |
---|
| 778 | model: ersem/benthic_column_dissolved_matter |
---|
| 779 | parameters: |
---|
| 780 | composition: o # composition (any combination of c,n,p,s,o,a) |
---|
| 781 | last_layer: 1 # sediment layer where concentration drops to zero, default = 3 |
---|
| 782 | relax: 5.0 # rate of relaxation towards equilibrium concentration profile (1/d) |
---|
| 783 | minD: 0.0001 # minimum depth of zero-concentration isocline (m) |
---|
| 784 | initialization: |
---|
| 785 | o: 0.0225 # oxygen (mmol/m^2) |
---|
| 786 | coupling: |
---|
| 787 | o_pel: O2/o # pelagic oxygen (mmol/m^3) |
---|
| 788 | G3: |
---|
| 789 | long_name: benthic dissolved inorganic carbon |
---|
| 790 | model: ersem/benthic_column_dissolved_matter |
---|
| 791 | parameters: |
---|
| 792 | composition: c # composition (any combination of c,n,p,s,o,a) |
---|
| 793 | initialization: |
---|
| 794 | c: 375.0 # carbon (mmol/m^2) |
---|
| 795 | coupling: |
---|
| 796 | c_pel: O3/c # pelagic carbon (mmol/m^3) |
---|
| 797 | Q6s_aerobic: |
---|
| 798 | long_name: aerobic particulate silicate |
---|
| 799 | model: ersem/benthic_column_particulate_matter_layer |
---|
| 800 | parameters: |
---|
| 801 | composition: s # elemental composition |
---|
| 802 | remin: 0.007 # remineralization rate (1/d), default = 0.0 |
---|
| 803 | minimum_depth: 0.0 # minimum depth (m), default = 0.0 |
---|
| 804 | variable_maximum_depth: true # maximum depth is variable, default = false |
---|
| 805 | coupling: |
---|
| 806 | Q: Q6 |
---|
| 807 | maximum_depth: ben_col/D1m # maximum depth (m) |
---|
| 808 | s_remin_target: K5/per_layer/s1 # sink for remineralized silicate (mmol Si/m^2) |
---|
| 809 | Q6s_anaerobic: |
---|
| 810 | long_name: anaerobic particulate silicate |
---|
| 811 | model: ersem/benthic_column_particulate_matter_layer |
---|
| 812 | parameters: |
---|
| 813 | composition: s # elemental composition |
---|
| 814 | remin: 0.007 # remineralization rate (1/d), default = 0.0 |
---|
| 815 | variable_minimum_depth: true # minimum depth is variable, default = false |
---|
| 816 | maximum_depth: 0.3 # maximum depth (m), default = 0.0 |
---|
| 817 | source_depth_distribution: 2 # vertical distribution of changes (1: constant absolute rate, 2: constant relative rate, 3: constant carbon-based relative rate), default = 1 |
---|
| 818 | coupling: |
---|
| 819 | Q: Q6 |
---|
| 820 | minimum_depth: ben_col/D1m # minimum depth (m) |
---|
| 821 | s_remin_target: K5/per_layer/s2 # sink for remineralized silicate (mmol Si/m^2) |
---|
| 822 | ben_nit: |
---|
| 823 | long_name: benthic nitrogen cycle |
---|
| 824 | model: ersem/benthic_nitrogen_cycle |
---|
| 825 | parameters: |
---|
| 826 | q10nit: 2.0 # Q_10 temperature coefficient (-) |
---|
| 827 | hM4M3: 10.0 # Michaelis-Menten constant for nitrate limitation (mmol/m^3) |
---|
| 828 | ISWph: 1 # pH impact on nitrification (0: off, 1: on), default = 0 |
---|
| 829 | sM4M3: 4.0 # maximum nitrification rate at 10 degrees Celsius (1/d) |
---|
| 830 | xno3: 2.0 # oxygen consumed per nitrate produced (mol O_2/mol N) |
---|
| 831 | pammon: 0.5 # fraction of oxygen demand fulfilled by denitrification under anaerobic conditions (-) |
---|
| 832 | pdenit: 0.05 # fraction of denitrification producing dinitrogen gas (remainder produces ammonium) (-) |
---|
| 833 | xn2: 1.25 # oxygen produced per N2 produced (-) |
---|
| 834 | hM3G4: 1.0 # Michaelis-Menten constant for nitrate limitation of denitrification (mmol N/m^3) |
---|
| 835 | coupling: |
---|
| 836 | K3n: K3/per_layer/n1 # nitrate (mmol N/m^2) |
---|
| 837 | K4n: K4/per_layer/n1 # ammonium (mmol N/m^2) |
---|
| 838 | G2o: G2/per_layer/o1 # oxygen (mmol O_2/m^2) |
---|
| 839 | N4n: N4/n # pelagic ammonium (mmol N/m^3) |
---|
| 840 | benTA: zero_hz # benthic alkalinity in aerobic layer (mEq/m^2) |
---|
| 841 | benTA2: zero_hz # benthic alkalinity in anaerobic layer (mEq/m^2) |
---|
| 842 | K3n2: K3/per_layer/n2 # benthic nitrate in 2nd layer (mmol N/m^2) |
---|
| 843 | K4n2: K4/per_layer/n2 # benthic ammonium in 2nd layer (mmol N/m^2) |
---|
| 844 | G2o2: G2/per_layer/o2 # oxygen in 2nd layer (mmol O_2/m^2) |
---|
| 845 | layer2_thickness: ben_col/layer2_thickness # thickness of 2nd layer (m) |
---|
| 846 | H1: |
---|
| 847 | long_name: benthic aerobic bacteria |
---|
| 848 | model: ersem/benthic_bacteria |
---|
| 849 | parameters: |
---|
| 850 | qnc: 0.0167 # nitrogen to carbon ratio (mmol N/mg C) |
---|
| 851 | qpc: 0.00125 # phosphorus to carbon ratio (mmol P/mg C) |
---|
| 852 | c0: 1.e-06 # background carbon concentration (mg C/m^2) |
---|
| 853 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
| 854 | dd: 0.001 # Michaelis-Menten constant for oxygen limitation through layer thickness (m) |
---|
| 855 | nfood: 3 # number of food sources |
---|
| 856 | su1: 0.0005 # base affinity for food source 1 (m^2/mg C/d) |
---|
| 857 | su2: 2.e-05 # base affinity for food source 2 (m^2/mg C/d) |
---|
| 858 | suf2: 0.0002 # additional affinity for food source 2 subject to nutrient limitation (m^2/mg C/d), default = 0.0 |
---|
| 859 | puinc2: 2.0 # affinity for nutrients relative to carbon in food source 2 (-), default = 1.0 |
---|
| 860 | pue2: 0.1 # fraction of consumed food source 2 that is excreted (-), default = 0.0 |
---|
| 861 | su3: 2.e-06 # base affinity for food source 3 (m^2/mg C/d) |
---|
| 862 | pue3: 0.1 # fraction of consumed food source 3 that is excreted (-), default = 0.0 |
---|
| 863 | pur: 0.3 # fraction of consumed carbon that is respired (-) |
---|
| 864 | sr: 0.02 # specific rest respiration (1/d) |
---|
| 865 | pdQ1: 0.1 # fraction of dying matter that is dissolved (-) |
---|
| 866 | sd: 0.05 # specific maximum mortality related to oxygen limitation (1/d) |
---|
| 867 | initialization: |
---|
| 868 | c: 25.0 # carbon (mg C/m^2) |
---|
| 869 | coupling: |
---|
| 870 | Q1: Q1 |
---|
| 871 | Q6: H1_Q6 |
---|
| 872 | food1: Q1 |
---|
| 873 | food2: H1_Q6 |
---|
| 874 | food3: H1_Q7 |
---|
| 875 | Dm: ben_col/D1m # depth interval available to bacteria (m) |
---|
| 876 | K4n: K4/per_layer/n1_pw # ammonium (mmol N/m^2) |
---|
| 877 | K1p: K1/per_layer/p1_pw # phosphate (mmol N/m^2) |
---|
| 878 | G2o: G2/per_layer/o1 # oxygen (mmol O_2/m^2) |
---|
| 879 | G3c: G3/per_layer/c1 # dissolved inorganic carbon (mmol C/m^2) |
---|
| 880 | benTA: zero_hz # benthic alkalinity (mEq/m^2) |
---|
| 881 | H1_Q6: |
---|
| 882 | long_name: benthic aerobic bacteria POM |
---|
| 883 | model: ersem/benthic_column_particulate_matter_layer |
---|
| 884 | parameters: |
---|
| 885 | composition: cnps # elemental composition |
---|
| 886 | minimum_depth: 0.0 # minimum depth (m), default = 0.0 |
---|
| 887 | variable_maximum_depth: true # maximum depth is variable, default = false |
---|
| 888 | coupling: |
---|
| 889 | Q: Q6 |
---|
| 890 | maximum_depth: ben_col/D1m # maximum depth (m) |
---|
| 891 | H1_Q7: |
---|
| 892 | long_name: benthic aerobic bacteria refractory POM |
---|
| 893 | model: ersem/benthic_column_particulate_matter_layer |
---|
| 894 | parameters: |
---|
| 895 | composition: cnp # elemental composition |
---|
| 896 | minimum_depth: 0.0 # minimum depth (m), default = 0.0 |
---|
| 897 | variable_maximum_depth: true # maximum depth is variable, default = false |
---|
| 898 | coupling: |
---|
| 899 | Q: Q7 |
---|
| 900 | maximum_depth: ben_col/D1m # maximum depth (m) |
---|
| 901 | H2: |
---|
| 902 | long_name: benthic anaerobic bacteria |
---|
| 903 | model: ersem/benthic_bacteria |
---|
| 904 | parameters: |
---|
| 905 | qnc: 0.0167 # nitrogen to carbon ratio (mmol N/mg C) |
---|
| 906 | qpc: 0.00125 # phosphorus to carbon ratio (mmol P/mg C) |
---|
| 907 | c0: 1.e-06 # background carbon concentration (mg C/m^2) |
---|
| 908 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
| 909 | dd: 0.01 # Michaelis-Menten constant for oxygen limitation through layer thickness (m) |
---|
| 910 | nfood: 2 # number of food sources |
---|
| 911 | su1: 2.e-05 # base affinity for food source 1 (m^2/mg C/d) |
---|
| 912 | suf1: 0.0002 # additional affinity for food source 1 subject to nutrient limitation (m^2/mg C/d), default = 0.0 |
---|
| 913 | puinc1: 2.0 # affinity for nutrients relative to carbon in food source 1 (-), default = 1.0 |
---|
| 914 | pue1: 0.0 # fraction of consumed food source 1 that is excreted (-), default = 0.0 |
---|
| 915 | su2: 2.e-06 # base affinity for food source 2 (m^2/mg C/d) |
---|
| 916 | pue2: 0.0 # fraction of consumed food source 2 that is excreted (-), default = 0.0 |
---|
| 917 | pur: 0.3 # fraction of consumed carbon that is respired (-) |
---|
| 918 | sr: 0.02 # specific rest respiration (1/d) |
---|
| 919 | pdQ1: 0.0 # fraction of dying matter that is dissolved (-) |
---|
| 920 | sd: 0.05 # specific maximum mortality related to oxygen limitation (1/d) |
---|
| 921 | initialization: |
---|
| 922 | c: 400.0 # carbon (mg C/m^2) |
---|
| 923 | coupling: |
---|
| 924 | Q1: Q1 |
---|
| 925 | Q6: H2_Q6 |
---|
| 926 | food1: H2_Q6 |
---|
| 927 | food2: H2_Q7 |
---|
| 928 | Dm: ben_col/layer2_thickness # depth interval available to bacteria (m) |
---|
| 929 | K4n: K4/per_layer/n2_pw # ammonium (mmol N/m^2) |
---|
| 930 | K1p: K1/per_layer/p2_pw # phosphate (mmol N/m^2) |
---|
| 931 | G2o: ben_nit/K6_calculator/K6 # oxygen (mmol O_2/m^2) |
---|
| 932 | G3c: G3/per_layer/c2 # dissolved inorganic carbon (mmol C/m^2) |
---|
| 933 | benTA: zero_hz # benthic alkalinity (mEq/m^2) |
---|
| 934 | H2_Q6: |
---|
| 935 | long_name: benthic anaerobic bacteria POM |
---|
| 936 | model: ersem/benthic_column_particulate_matter_layer |
---|
| 937 | parameters: |
---|
| 938 | composition: cnps # elemental composition |
---|
| 939 | variable_minimum_depth: true # minimum depth is variable, default = false |
---|
| 940 | maximum_depth: 0.3 # maximum depth (m), default = 0.0 |
---|
| 941 | source_depth_distribution: 3 # vertical distribution of changes (1: constant absolute rate, 2: constant relative rate, 3: constant carbon-based relative rate), default = 1 |
---|
| 942 | coupling: |
---|
| 943 | Q: Q6 |
---|
| 944 | minimum_depth: ben_col/D1m # minimum depth (m) |
---|
| 945 | H2_Q7: |
---|
| 946 | long_name: benthic anaerobic bacteria refractory POM |
---|
| 947 | model: ersem/benthic_column_particulate_matter_layer |
---|
| 948 | parameters: |
---|
| 949 | composition: cnp # elemental composition |
---|
| 950 | variable_minimum_depth: true # minimum depth is variable, default = false |
---|
| 951 | maximum_depth: 0.3 # maximum depth (m), default = 0.0 |
---|
| 952 | source_depth_distribution: 3 # vertical distribution of changes (1: constant absolute rate, 2: constant relative rate, 3: constant carbon-based relative rate), default = 1 |
---|
| 953 | coupling: |
---|
| 954 | Q: Q7 |
---|
| 955 | minimum_depth: ben_col/D1m # minimum depth (m) |
---|
| 956 | Y2: |
---|
| 957 | long_name: benthic deposit feeder |
---|
| 958 | model: ersem/benthic_fauna |
---|
| 959 | parameters: |
---|
| 960 | qnc: 0.0119 # nitrogen to carbon ratio (mmol N/mg C) |
---|
| 961 | qpc: 0.000792 # phosphorus to carbon ratio (mmol P/mg C) |
---|
| 962 | c0: 0.001 # background carbon concentration (mg C/m^2) |
---|
| 963 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
| 964 | rlO2: 0.0 # minimum pelagic oxygen concentration (mmol O2/m^3) |
---|
| 965 | hO2: 0.0 # Michaelis-Menten constant for oxygen limitation (mmol O2/m^3) |
---|
| 966 | xcl: 2500.0 # abundance above which crowding reduces food uptake (mg C/m^2) |
---|
| 967 | xcs: 3000.0 # Michaelis-Menten constant for the impact of crowding (mg C/m^2) |
---|
| 968 | xch: 5000.0 # abundance determining asymptotic threshold of crowding limitation (-> xch/(Yc+xch) for Yc-> inf) (mg C/m^2) |
---|
| 969 | su: 0.11 # specific maximum uptake at reference temperature (1/d) |
---|
| 970 | lu: 250.0 # Michaelis-Menten constant for food preference as function of food concentration (mg C/m^2) |
---|
| 971 | hu: 3000.0 # Michaelis-Menten constant for gross carbon uptake (mg C/m^2) |
---|
| 972 | pue: 0.35 # fraction of carbon in consumed live food that goes to faeces (-) |
---|
| 973 | pueQ: 0.8 # fraction of carbon in consumed detritus that goes to faeces (-) |
---|
| 974 | pudil: 0.8 # relative nutrient content of faeces (-) |
---|
| 975 | sd: 0.001 # specific mortality at reference temperature (1/d) |
---|
| 976 | sdmO2: 1.0 # specific maximum additional mortality due to oxygen stress (1/d) |
---|
| 977 | sdc: 0.022 # specific maximum additional mortality induced by cold temperature (1/d) |
---|
| 978 | xdc: -0.7 # e-folding temperature factor of cold mortality response (1/degree_C) |
---|
| 979 | sr: 0.0027 # specific rest respiration at reference temperature (1/d) |
---|
| 980 | pur: 0.35 # fraction of assimilated food that is respired (-) |
---|
| 981 | nfood: 4 # number of food sources, default = 0 |
---|
| 982 | pufood1: 1.0 # preference for food source 1 (-) |
---|
| 983 | pufood2: 1.0 # preference for food source 2 (-) |
---|
| 984 | pufood3: 0.1 # preference for food source 3 (-) |
---|
| 985 | pufood4: 1.0 # preference for food source 4 (-) |
---|
| 986 | food3ispom: true # food source 3 is detritus, default = false |
---|
| 987 | ptur: 1.0 # relative contribution to bioturbation (-), default = 0.0 |
---|
| 988 | pirr: 1.0 # relative contribution to bioirrigation (-), default = 0.0 |
---|
| 989 | initialization: |
---|
| 990 | c: 3000.0 # carbon (mg C/m^2) |
---|
| 991 | coupling: |
---|
| 992 | food1: H1 |
---|
| 993 | food2: H2 |
---|
| 994 | food3: Y2_Q6_source |
---|
| 995 | food4: Y4 |
---|
| 996 | Q: Y2_Q6_sink |
---|
| 997 | Dm: ben_col/D1m # depth of limiting layer for uptake (m) |
---|
| 998 | O2o: O2/o # pelagic oxygen (mmol O_2/m^3) |
---|
| 999 | G3c: G3/per_layer/c1 # carbon dioxide (mmol C/m^2) |
---|
| 1000 | G2o: G2/per_layer/o1 # oxygen (mmol O_2/m^2) |
---|
| 1001 | K1p: K1/per_layer/p1 # benthic phosphate in aerobic layer (mmol P/m^2) |
---|
| 1002 | K4n: K4/per_layer/n1 # benthic ammonium in aerobic layer (mmol N/m^2) |
---|
| 1003 | K1p2: K1/per_layer/p2 # benthic phosphate in anaerobic layer (mmol P/m^2) |
---|
| 1004 | K4n2: K4/per_layer/n2 # benthic ammonium in anaerobic layer (mmol N/m^2) |
---|
| 1005 | benTA: zero_hz # benthic alkalinity in aerobic layer (mEq/m^2) |
---|
| 1006 | benTA2: zero_hz # benthic alkalinity in anaerobic layer (mEq/m^2) |
---|
| 1007 | food2c_an: H2/c # food source 2 carbon in anaerobic layer (mg C/m^2) |
---|
| 1008 | food3c_an: Y2_Q6_source_anaerobic/c # food source 3 carbon in anaerobic layer (mg C/m^2) |
---|
| 1009 | Y2_Q6_source: |
---|
| 1010 | long_name: benthic deposit feeder total POM |
---|
| 1011 | model: ersem/benthic_column_particulate_matter_layer |
---|
| 1012 | parameters: |
---|
| 1013 | composition: cnps # elemental composition |
---|
| 1014 | minimum_depth: 0.0025 # minimum depth (m), default = 0.0 |
---|
| 1015 | maximum_depth: 0.3 # maximum depth (m), default = 0.0 |
---|
| 1016 | coupling: |
---|
| 1017 | Q: Q6 |
---|
| 1018 | Y2_Q6_source_anaerobic: |
---|
| 1019 | long_name: benthic deposit feeder anaerobic POM |
---|
| 1020 | model: ersem/benthic_column_particulate_matter_layer |
---|
| 1021 | parameters: |
---|
| 1022 | composition: cnps # elemental composition |
---|
| 1023 | variable_minimum_depth: true # minimum depth is variable, default = false |
---|
| 1024 | maximum_depth: 0.3 # maximum depth (m), default = 0.0 |
---|
| 1025 | coupling: |
---|
| 1026 | Q: Q6 |
---|
| 1027 | minimum_depth: ben_col/D1m # minimum depth (m) |
---|
| 1028 | Y2_Q6_sink: |
---|
| 1029 | long_name: benthic deposit feeder POM sink |
---|
| 1030 | model: ersem/benthic_column_particulate_matter_layer |
---|
| 1031 | parameters: |
---|
| 1032 | composition: cnps # elemental composition |
---|
| 1033 | minimum_depth: 0.0 # minimum depth (m), default = 0.0 |
---|
| 1034 | variable_maximum_depth: true # maximum depth is variable, default = false |
---|
| 1035 | coupling: |
---|
| 1036 | Q: Q6 |
---|
| 1037 | maximum_depth: Q6/pen_depth_c # maximum depth (m) |
---|
| 1038 | Y3: |
---|
| 1039 | long_name: benthic suspension feeder |
---|
| 1040 | model: ersem/benthic_fauna |
---|
| 1041 | parameters: |
---|
| 1042 | qnc: 0.0119 # nitrogen to carbon ratio (mmol N/mg C) |
---|
| 1043 | qpc: 0.000792 # phosphorus to carbon ratio (mmol P/mg C) |
---|
| 1044 | c0: 0.001 # background carbon concentration (mg C/m^2) |
---|
| 1045 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
| 1046 | rlO2: 0.0 # minimum pelagic oxygen concentration (mmol O2/m^3) |
---|
| 1047 | hO2: 0.0 # Michaelis-Menten constant for oxygen limitation (mmol O2/m^3) |
---|
| 1048 | xcl: 2500.0 # abundance above which crowding reduces food uptake (mg C/m^2) |
---|
| 1049 | xcs: 3000.0 # Michaelis-Menten constant for the impact of crowding (mg C/m^2) |
---|
| 1050 | xch: 5000.0 # abundance determining asymptotic threshold of crowding limitation (-> xch/(Yc+xch) for Yc-> inf) (mg C/m^2) |
---|
| 1051 | su: 0.09 # specific maximum uptake at reference temperature (1/d) |
---|
| 1052 | lu: 10.0 # Michaelis-Menten constant for food preference as function of food concentration (mg C/m^2) |
---|
| 1053 | hu: 300.0 # Michaelis-Menten constant for gross carbon uptake (mg C/m^2) |
---|
| 1054 | pue: 0.35 # fraction of carbon in consumed live food that goes to faeces (-) |
---|
| 1055 | pueQ: 0.85 # fraction of carbon in consumed detritus that goes to faeces (-) |
---|
| 1056 | pudil: 0.8 # relative nutrient content of faeces (-) |
---|
| 1057 | sd: 0.001 # specific mortality at reference temperature (1/d) |
---|
| 1058 | sdmO2: 1.0 # specific maximum additional mortality due to oxygen stress (1/d) |
---|
| 1059 | sdc: 0.022 # specific maximum additional mortality induced by cold temperature (1/d) |
---|
| 1060 | xdc: -0.7 # e-folding temperature factor of cold mortality response (1/degree_C) |
---|
| 1061 | sr: 0.0027 # specific rest respiration at reference temperature (1/d) |
---|
| 1062 | pur: 0.4 # fraction of assimilated food that is respired (-) |
---|
| 1063 | nfood: 6 # number of food sources, default = 0 |
---|
| 1064 | food1ispel: true # food source 1 is pelagic, default = false |
---|
| 1065 | food2ispel: true # food source 2 is pelagic, default = false |
---|
| 1066 | food3ispel: true # food source 3 is pelagic, default = false |
---|
| 1067 | food4ispel: true # food source 4 is pelagic, default = false |
---|
| 1068 | food5_ll: true # availability of food source 5 is limited by aerobic layer height, default = false |
---|
| 1069 | pufood1: 1.0 # preference for food source 1 (-) |
---|
| 1070 | pufood2: 1.0 # preference for food source 2 (-) |
---|
| 1071 | pufood3: 1.0 # preference for food source 3 (-) |
---|
| 1072 | pufood4: 1.0 # preference for food source 4 (-) |
---|
| 1073 | pufood5: 1.0 # preference for food source 5 (-) |
---|
| 1074 | pufood6: 0.1 # preference for food source 6 (-) |
---|
| 1075 | food4ispom: true # food source 4 is detritus, default = false |
---|
| 1076 | food6ispom: true # food source 6 is detritus, default = false |
---|
| 1077 | dwat: 1.0 # water layer accessible for pelagic food uptake (m), default = 1.0 |
---|
| 1078 | dQ6: 0.0025 # depth of available sediment layer (m), default = 0.0 |
---|
| 1079 | initialization: |
---|
| 1080 | c: 2000.0 # carbon (mg C/m^2) |
---|
| 1081 | coupling: |
---|
| 1082 | food1: P1 |
---|
| 1083 | food2: P2 |
---|
| 1084 | food3: P3 |
---|
| 1085 | food4: R6 |
---|
| 1086 | food5: H1 |
---|
| 1087 | food6: Y3_Q6 |
---|
| 1088 | Q: Y3_Q6 |
---|
| 1089 | Dm: ben_col/D1m # depth of limiting layer for uptake (m) |
---|
| 1090 | O2o: O2/o # pelagic oxygen (mmol O_2/m^3) |
---|
| 1091 | G3c: G3/per_layer/c1 # carbon dioxide (mmol C/m^2) |
---|
| 1092 | G2o: G2/per_layer/o1 # oxygen (mmol O_2/m^2) |
---|
| 1093 | K1p: K1/per_layer/p1 # benthic phosphate in aerobic layer (mmol P/m^2) |
---|
| 1094 | K4n: K4/per_layer/n1 # benthic ammonium in aerobic layer (mmol N/m^2) |
---|
| 1095 | K1p2: K1/per_layer/p2 # benthic phosphate in anaerobic layer (mmol P/m^2) |
---|
| 1096 | K4n2: K4/per_layer/n2 # benthic ammonium in anaerobic layer (mmol N/m^2) |
---|
| 1097 | benTA: zero_hz # benthic alkalinity in aerobic layer (mEq/m^2) |
---|
| 1098 | benTA2: zero_hz # benthic alkalinity in anaerobic layer (mEq/m^2) |
---|
| 1099 | Y3_Q6: |
---|
| 1100 | long_name: benthic suspension feeder POM |
---|
| 1101 | model: ersem/benthic_column_particulate_matter_layer |
---|
| 1102 | parameters: |
---|
| 1103 | composition: cnps # elemental composition |
---|
| 1104 | minimum_depth: 0.0 # minimum depth (m), default = 0.0 |
---|
| 1105 | maximum_depth: 0.0025 # maximum depth (m), default = 0.0 |
---|
| 1106 | coupling: |
---|
| 1107 | Q: Q6 |
---|
| 1108 | Y4: |
---|
| 1109 | long_name: benthic meiofauna |
---|
| 1110 | model: ersem/benthic_fauna |
---|
| 1111 | parameters: |
---|
| 1112 | qnc: 0.0119 # nitrogen to carbon ratio (mmol N/mg C) |
---|
| 1113 | qpc: 0.000792 # phosphorus to carbon ratio (mmol P/mg C) |
---|
| 1114 | c0: 0.001 # background carbon concentration (mg C/m^2) |
---|
| 1115 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
| 1116 | rlO2: 0.0 # minimum pelagic oxygen concentration (mmol O2/m^3) |
---|
| 1117 | hO2: 0.0 # Michaelis-Menten constant for oxygen limitation (mmol O2/m^3) |
---|
| 1118 | xcl: 25000.0 # abundance above which crowding reduces food uptake (mg C/m^2) |
---|
| 1119 | xcs: 3000.0 # Michaelis-Menten constant for the impact of crowding (mg C/m^2) |
---|
| 1120 | xch: 5000.0 # abundance determining asymptotic threshold of crowding limitation (-> xch/(Yc+xch) for Yc-> inf) (mg C/m^2) |
---|
| 1121 | su: 0.4 # specific maximum uptake at reference temperature (1/d) |
---|
| 1122 | lu: 50.0 # Michaelis-Menten constant for food preference as function of food concentration (mg C/m^2) |
---|
| 1123 | hu: 1000.0 # Michaelis-Menten constant for gross carbon uptake (mg C/m^2) |
---|
| 1124 | pue: 0.25 # fraction of carbon in consumed live food that goes to faeces (-) |
---|
| 1125 | pueQ: 0.4 # fraction of carbon in consumed detritus that goes to faeces (-) |
---|
| 1126 | pudil: 0.8 # relative nutrient content of faeces (-) |
---|
| 1127 | sd: 0.01 # specific mortality at reference temperature (1/d) |
---|
| 1128 | sdmO2: 1.0 # specific maximum additional mortality due to oxygen stress (1/d) |
---|
| 1129 | sdc: 0.02 # specific maximum additional mortality induced by cold temperature (1/d) |
---|
| 1130 | xdc: -0.7 # e-folding temperature factor of cold mortality response (1/degree_C) |
---|
| 1131 | sr: 0.01 # specific rest respiration at reference temperature (1/d) |
---|
| 1132 | pur: 0.45 # fraction of assimilated food that is respired (-) |
---|
| 1133 | nfood: 4 # number of food sources, default = 0 |
---|
| 1134 | pufood1: 1.0 # preference for food source 1 (-) |
---|
| 1135 | pufood2: 1.0 # preference for food source 2 (-) |
---|
| 1136 | pufood3: 1.0 # preference for food source 3 (-) |
---|
| 1137 | pufood4: 0.3 # preference for food source 4 (-) |
---|
| 1138 | food4ispom: true # food source 4 is detritus, default = false |
---|
| 1139 | pirr: 0.2 # relative contribution to bioirrigation (-), default = 0.0 |
---|
| 1140 | initialization: |
---|
| 1141 | c: 200.0 # carbon (mg C/m^2) |
---|
| 1142 | coupling: |
---|
| 1143 | food1: H1 |
---|
| 1144 | food2: H2 |
---|
| 1145 | food3: Y4 |
---|
| 1146 | food4: Y4_Q6 |
---|
| 1147 | Q: Y4_Q6 |
---|
| 1148 | Dm: ben_col/D1m # depth of limiting layer for uptake (m) |
---|
| 1149 | O2o: O2/o # pelagic oxygen (mmol O_2/m^3) |
---|
| 1150 | G3c: G3/per_layer/c1 # carbon dioxide (mmol C/m^2) |
---|
| 1151 | G2o: G2/per_layer/o1 # oxygen (mmol O_2/m^2) |
---|
| 1152 | K1p: K1/per_layer/p1 # benthic phosphate in aerobic layer (mmol P/m^2) |
---|
| 1153 | K4n: K4/per_layer/n1 # benthic ammonium in aerobic layer (mmol N/m^2) |
---|
| 1154 | K1p2: K1/per_layer/p2 # benthic phosphate in anaerobic layer (mmol P/m^2) |
---|
| 1155 | K4n2: K4/per_layer/n2 # benthic ammonium in anaerobic layer (mmol N/m^2) |
---|
| 1156 | benTA: zero_hz # benthic alkalinity in aerobic layer (mEq/m^2) |
---|
| 1157 | benTA2: zero_hz # benthic alkalinity in anaerobic layer (mEq/m^2) |
---|
| 1158 | Y4_Q6: |
---|
| 1159 | long_name: benthic meiofauna POM |
---|
| 1160 | model: ersem/benthic_column_particulate_matter_layer |
---|
| 1161 | parameters: |
---|
| 1162 | composition: cnps # elemental composition |
---|
| 1163 | minimum_depth: 0.0 # minimum depth (m), default = 0.0 |
---|
| 1164 | maximum_depth: 0.03 # maximum depth (m), default = 0.0 |
---|
| 1165 | coupling: |
---|
| 1166 | Q: Q6 |
---|
| 1167 | #Inputs: |
---|
| 1168 | pco2a: |
---|
| 1169 | model: horizontal_constant |
---|
| 1170 | parameters: |
---|
| 1171 | value: 385 |
---|
| 1172 | standard_name: mole_fraction_of_carbon_dioxide_in_air |
---|
| 1173 | N3_flux: |
---|
| 1174 | model: external_surface_flux |
---|
| 1175 | coupling: |
---|
| 1176 | target: N3/n |
---|
| 1177 | N4_flux: |
---|
| 1178 | model: external_surface_flux |
---|
| 1179 | coupling: |
---|
| 1180 | target: N4/n |
---|
| 1181 | erosion: |
---|
| 1182 | model: ersem/benthic_erosion |
---|
| 1183 | #Diagnostics: |
---|
| 1184 | PON: |
---|
| 1185 | long_name: particulate organic nitrogen |
---|
| 1186 | model: weighted_sum |
---|
| 1187 | parameters: |
---|
| 1188 | n: 11 |
---|
| 1189 | weight5: 0.0126 |
---|
| 1190 | coupling: |
---|
| 1191 | term1: P1/n |
---|
| 1192 | term2: P2/n |
---|
| 1193 | term3: P3/n |
---|
| 1194 | term4: P4/n |
---|
| 1195 | term5: Z4/c |
---|
| 1196 | term6: Z5/n |
---|
| 1197 | term7: Z6/n |
---|
| 1198 | term8: B1/n |
---|
| 1199 | term9: R4/n |
---|
| 1200 | term10: R6/n |
---|
| 1201 | term11: R8/n |
---|
| 1202 | POP: |
---|
| 1203 | long_name: particulate organic phosphorus |
---|
| 1204 | model: weighted_sum |
---|
| 1205 | parameters: |
---|
| 1206 | n: 11 |
---|
| 1207 | weight5: 0.000786 |
---|
| 1208 | coupling: |
---|
| 1209 | term1: P1/p |
---|
| 1210 | term2: P2/p |
---|
| 1211 | term3: P3/p |
---|
| 1212 | term4: P4/p |
---|
| 1213 | term5: Z4/c |
---|
| 1214 | term6: Z5/p |
---|
| 1215 | term7: Z6/p |
---|
| 1216 | term8: B1/p |
---|
| 1217 | term9: R4/p |
---|
| 1218 | term10: R6/p |
---|
| 1219 | term11: R8/p |
---|
| 1220 | POSi: |
---|
| 1221 | model: weighted_sum |
---|
| 1222 | parameters: |
---|
| 1223 | n: 3 |
---|
| 1224 | coupling: |
---|
| 1225 | term1: P1/s |
---|
| 1226 | term2: R6/s |
---|
| 1227 | term3: R8/s |
---|
| 1228 | P1_fPIRIc: |
---|
| 1229 | long_name: diatom loss to organic carbon |
---|
| 1230 | model: weighted_sum |
---|
| 1231 | parameters: |
---|
| 1232 | n: 3 |
---|
| 1233 | coupling: |
---|
| 1234 | term1: P1/fPIR1c |
---|
| 1235 | term2: P1/fPIR2c |
---|
| 1236 | term3: P1/fPIRPc |
---|
| 1237 | P2_fPIRIc: |
---|
| 1238 | long_name: nanophytoplankton loss to organic carbon |
---|
| 1239 | model: weighted_sum |
---|
| 1240 | parameters: |
---|
| 1241 | n: 3 |
---|
| 1242 | coupling: |
---|
| 1243 | term1: P2/fPIR1c |
---|
| 1244 | term2: P2/fPIR2c |
---|
| 1245 | term3: P2/fPIRPc |
---|
| 1246 | P3_fPIRIc: |
---|
| 1247 | long_name: picophytoplankton loss to organic carbon |
---|
| 1248 | model: weighted_sum |
---|
| 1249 | parameters: |
---|
| 1250 | n: 3 |
---|
| 1251 | coupling: |
---|
| 1252 | term1: P3/fPIR1c |
---|
| 1253 | term2: P3/fPIR2c |
---|
| 1254 | term3: P3/fPIRPc |
---|
| 1255 | P4_fPIRIc: |
---|
| 1256 | long_name: microphytoplankton loss to organic carbon |
---|
| 1257 | model: weighted_sum |
---|
| 1258 | parameters: |
---|
| 1259 | n: 3 |
---|
| 1260 | coupling: |
---|
| 1261 | term1: P4/fPIR1c |
---|
| 1262 | term2: P4/fPIR2c |
---|
| 1263 | term3: P4/fPIRPc |
---|
| 1264 | phytoplankton_loss_to_labile_DOC: |
---|
| 1265 | long_name: phytoplankton loss to labile dissolved organic carbon |
---|
| 1266 | model: weighted_sum |
---|
| 1267 | parameters: |
---|
| 1268 | n: 4 |
---|
| 1269 | coupling: |
---|
| 1270 | term1: P1/fPIR1c |
---|
| 1271 | term2: P2/fPIR1c |
---|
| 1272 | term3: P3/fPIR1c |
---|
| 1273 | term4: P4/fPIR1c |
---|
| 1274 | phytoplankton_loss_to_labile_DON: |
---|
| 1275 | long_name: phytoplankton loss to labile dissolved organic nitrogen |
---|
| 1276 | model: weighted_sum |
---|
| 1277 | parameters: |
---|
| 1278 | n: 4 |
---|
| 1279 | coupling: |
---|
| 1280 | term1: P1/fPIR1n |
---|
| 1281 | term2: P2/fPIR1n |
---|
| 1282 | term3: P3/fPIR1n |
---|
| 1283 | term4: P4/fPIR1n |
---|
| 1284 | phytoplankton_loss_to_labile_DOP: |
---|
| 1285 | long_name: phytoplankton loss to labile dissolved organic phosphorus |
---|
| 1286 | model: weighted_sum |
---|
| 1287 | parameters: |
---|
| 1288 | n: 4 |
---|
| 1289 | coupling: |
---|
| 1290 | term1: P1/fPIR1p |
---|
| 1291 | term2: P2/fPIR1p |
---|
| 1292 | term3: P3/fPIR1p |
---|
| 1293 | term4: P4/fPIR1p |
---|
| 1294 | phytoplankton_loss_to_non_labile_DOC: |
---|
| 1295 | long_name: phytoplankton loss to non-labile dissolved organic carbon |
---|
| 1296 | model: weighted_sum |
---|
| 1297 | parameters: |
---|
| 1298 | n: 4 |
---|
| 1299 | coupling: |
---|
| 1300 | term1: P1/fPIR2c |
---|
| 1301 | term2: P2/fPIR2c |
---|
| 1302 | term3: P3/fPIR2c |
---|
| 1303 | term4: P4/fPIR2c |
---|
| 1304 | phytoplankton_loss_to_POC: |
---|
| 1305 | long_name: phytoplankton loss to particulate organic carbon |
---|
| 1306 | model: weighted_sum |
---|
| 1307 | parameters: |
---|
| 1308 | n: 4 |
---|
| 1309 | coupling: |
---|
| 1310 | term1: P1/fPIRPc |
---|
| 1311 | term2: P2/fPIRPc |
---|
| 1312 | term3: P3/fPIRPc |
---|
| 1313 | term4: P4/fPIRPc |
---|
| 1314 | phytoplankton_loss_to_PON: |
---|
| 1315 | long_name: phytoplankton loss to particulate organic nitrogen |
---|
| 1316 | model: weighted_sum |
---|
| 1317 | parameters: |
---|
| 1318 | n: 4 |
---|
| 1319 | coupling: |
---|
| 1320 | term1: P1/fPIRPn |
---|
| 1321 | term2: P2/fPIRPn |
---|
| 1322 | term3: P3/fPIRPn |
---|
| 1323 | term4: P4/fPIRPn |
---|
| 1324 | phytoplankton_loss_to_POP: |
---|
| 1325 | long_name: phytoplankton loss to particulate organic phosphorus |
---|
| 1326 | model: weighted_sum |
---|
| 1327 | parameters: |
---|
| 1328 | n: 4 |
---|
| 1329 | coupling: |
---|
| 1330 | term1: P1/fPIRPp |
---|
| 1331 | term2: P2/fPIRPp |
---|
| 1332 | term3: P3/fPIRPp |
---|
| 1333 | term4: P4/fPIRPp |
---|
| 1334 | phytoplankton_uptake_oxN: |
---|
| 1335 | long_name: phytoplankton uptake of oxidized nitrogen |
---|
| 1336 | model: weighted_sum |
---|
| 1337 | parameters: |
---|
| 1338 | n: 4 |
---|
| 1339 | coupling: |
---|
| 1340 | term1: P1/fN3PIn |
---|
| 1341 | term2: P2/fN3PIn |
---|
| 1342 | term3: P3/fN3PIn |
---|
| 1343 | term4: P4/fN3PIn |
---|
| 1344 | phytoplankton_uptake_redN: |
---|
| 1345 | long_name: phytoplankton uptake of reduced nitrogen |
---|
| 1346 | model: weighted_sum |
---|
| 1347 | parameters: |
---|
| 1348 | n: 4 |
---|
| 1349 | coupling: |
---|
| 1350 | term1: P1/fN4PIn |
---|
| 1351 | term2: P2/fN4PIn |
---|
| 1352 | term3: P3/fN4PIn |
---|
| 1353 | term4: P4/fN4PIn |
---|
| 1354 | phytoplankton_uptake_DIP: |
---|
| 1355 | long_name: phytoplankton uptake of dissolved inorganic phosphorus |
---|
| 1356 | model: weighted_sum |
---|
| 1357 | parameters: |
---|
| 1358 | n: 4 |
---|
| 1359 | coupling: |
---|
| 1360 | term1: P1/fN1PIp |
---|
| 1361 | term2: P2/fN1PIp |
---|
| 1362 | term3: P3/fN1PIp |
---|
| 1363 | term4: P4/fN1PIp |
---|
| 1364 | Z4_fphytoc: |
---|
| 1365 | long_name: mesozooplankton grazing of phytoplankton carbon |
---|
| 1366 | model: weighted_sum |
---|
| 1367 | parameters: |
---|
| 1368 | n: 4 |
---|
| 1369 | coupling: |
---|
| 1370 | term1: Z4/fprey1c |
---|
| 1371 | term2: Z4/fprey2c |
---|
| 1372 | term3: Z4/fprey3c |
---|
| 1373 | term4: Z4/fprey4c |
---|
| 1374 | Z4_fphyton: |
---|
| 1375 | long_name: mesozooplankton grazing of phytoplankton nitrogen |
---|
| 1376 | model: weighted_sum |
---|
| 1377 | parameters: |
---|
| 1378 | n: 4 |
---|
| 1379 | coupling: |
---|
| 1380 | term1: Z4/fprey1n |
---|
| 1381 | term2: Z4/fprey2n |
---|
| 1382 | term3: Z4/fprey3n |
---|
| 1383 | term4: Z4/fprey4n |
---|
| 1384 | Z4_fphytop: |
---|
| 1385 | long_name: mesozooplankton grazing of phytoplankton phosphorus |
---|
| 1386 | model: weighted_sum |
---|
| 1387 | parameters: |
---|
| 1388 | n: 4 |
---|
| 1389 | coupling: |
---|
| 1390 | term1: Z4/fprey1p |
---|
| 1391 | term2: Z4/fprey2p |
---|
| 1392 | term3: Z4/fprey3p |
---|
| 1393 | term4: Z4/fprey4p |
---|
| 1394 | Z4_fzooc: |
---|
| 1395 | long_name: mesozooplankton predation of phytoplankton carbon |
---|
| 1396 | model: weighted_sum |
---|
| 1397 | parameters: |
---|
| 1398 | n: 3 |
---|
| 1399 | coupling: |
---|
| 1400 | term1: Z4/fprey5c |
---|
| 1401 | term2: Z4/fprey6c |
---|
| 1402 | term3: Z4/fprey7c |
---|
| 1403 | Z4_fzoon: |
---|
| 1404 | long_name: mesozooplankton predation of phytoplankton nitrogen |
---|
| 1405 | model: weighted_sum |
---|
| 1406 | parameters: |
---|
| 1407 | n: 3 |
---|
| 1408 | coupling: |
---|
| 1409 | term1: Z4/fprey5n |
---|
| 1410 | term2: Z4/fprey6n |
---|
| 1411 | term3: Z4/fprey7n |
---|
| 1412 | Z4_fzoop: |
---|
| 1413 | long_name: mesozooplankton predation of zooplankton phosphorus |
---|
| 1414 | model: weighted_sum |
---|
| 1415 | parameters: |
---|
| 1416 | n: 3 |
---|
| 1417 | coupling: |
---|
| 1418 | term1: Z4/fprey5p |
---|
| 1419 | term2: Z4/fprey6p |
---|
| 1420 | term3: Z4/fprey7p |
---|
| 1421 | Z5_fphytoc: |
---|
| 1422 | long_name: microzooplankton grazing of phytoplankton carbon |
---|
| 1423 | model: weighted_sum |
---|
| 1424 | parameters: |
---|
| 1425 | n: 4 |
---|
| 1426 | coupling: |
---|
| 1427 | term1: Z5/fprey2c |
---|
| 1428 | term2: Z5/fprey3c |
---|
| 1429 | term3: Z5/fprey4c |
---|
| 1430 | term4: Z5/fprey5c |
---|
| 1431 | Z5_fphyton: |
---|
| 1432 | long_name: microzooplankton grazing of phytoplankton nitrogen |
---|
| 1433 | model: weighted_sum |
---|
| 1434 | parameters: |
---|
| 1435 | n: 4 |
---|
| 1436 | coupling: |
---|
| 1437 | term1: Z5/fprey2n |
---|
| 1438 | term2: Z5/fprey3n |
---|
| 1439 | term3: Z5/fprey4n |
---|
| 1440 | term4: Z5/fprey5n |
---|
| 1441 | Z5_fphytop: |
---|
| 1442 | long_name: microzooplankton grazing of phytoplankton phosphorus |
---|
| 1443 | model: weighted_sum |
---|
| 1444 | parameters: |
---|
| 1445 | n: 4 |
---|
| 1446 | coupling: |
---|
| 1447 | term1: Z5/fprey2p |
---|
| 1448 | term2: Z5/fprey3p |
---|
| 1449 | term3: Z5/fprey4p |
---|
| 1450 | term4: Z5/fprey5p |
---|
| 1451 | Z5_fzooc: |
---|
| 1452 | long_name: microzooplankton predation of zooplankton carbon |
---|
| 1453 | model: weighted_sum |
---|
| 1454 | parameters: |
---|
| 1455 | n: 2 |
---|
| 1456 | coupling: |
---|
| 1457 | term1: Z5/fprey6c |
---|
| 1458 | term2: Z5/fprey7c |
---|
| 1459 | Z5_fzoon: |
---|
| 1460 | long_name: microzooplankton predation of zooplankton nitrogen |
---|
| 1461 | model: weighted_sum |
---|
| 1462 | parameters: |
---|
| 1463 | n: 2 |
---|
| 1464 | coupling: |
---|
| 1465 | term1: Z5/fprey6n |
---|
| 1466 | term2: Z5/fprey7n |
---|
| 1467 | Z5_fzoop: |
---|
| 1468 | long_name: microzooplankton predation of zooplankton phosphorus |
---|
| 1469 | model: weighted_sum |
---|
| 1470 | parameters: |
---|
| 1471 | n: 2 |
---|
| 1472 | coupling: |
---|
| 1473 | term1: Z5/fprey6p |
---|
| 1474 | term2: Z5/fprey7p |
---|
| 1475 | Z6_fphytoc: |
---|
| 1476 | long_name: heterotrophic flagellate grazing of phytoplankton carbon |
---|
| 1477 | model: weighted_sum |
---|
| 1478 | parameters: |
---|
| 1479 | n: 2 |
---|
| 1480 | coupling: |
---|
| 1481 | term1: Z6/fprey2c |
---|
| 1482 | term2: Z6/fprey3c |
---|
| 1483 | Z6_fphyton: |
---|
| 1484 | long_name: heterotrophic flagellate grazing of phytoplankton nitrogen |
---|
| 1485 | model: weighted_sum |
---|
| 1486 | parameters: |
---|
| 1487 | n: 2 |
---|
| 1488 | coupling: |
---|
| 1489 | term1: Z6/fprey2n |
---|
| 1490 | term2: Z6/fprey3n |
---|
| 1491 | Z6_fphytop: |
---|
| 1492 | long_name: heterotrophic flagellate grazing of phytoplankton phosphorus |
---|
| 1493 | model: weighted_sum |
---|
| 1494 | parameters: |
---|
| 1495 | n: 2 |
---|
| 1496 | coupling: |
---|
| 1497 | term1: Z6/fprey2p |
---|
| 1498 | term2: Z6/fprey3p |
---|
| 1499 | total_microzooplankton_loss_to_POC: |
---|
| 1500 | long_name: total microzooplankton loss to particulate organic carbon |
---|
| 1501 | model: weighted_sum |
---|
| 1502 | parameters: |
---|
| 1503 | n: 2 |
---|
| 1504 | coupling: |
---|
| 1505 | term1: Z5/fZIRPc |
---|
| 1506 | term2: Z6/fZIRPc |
---|
| 1507 | total_microzooplankton_loss_to_PON: |
---|
| 1508 | long_name: total microzooplankton loss to particulate organic nitrogen |
---|
| 1509 | model: weighted_sum |
---|
| 1510 | parameters: |
---|
| 1511 | n: 2 |
---|
| 1512 | coupling: |
---|
| 1513 | term1: Z5/fZIRPn |
---|
| 1514 | term2: Z6/fZIRPn |
---|
| 1515 | total_microzooplankton_loss_to_POP: |
---|
| 1516 | long_name: total microzooplankton loss to particulate organic phosphorus |
---|
| 1517 | model: weighted_sum |
---|
| 1518 | parameters: |
---|
| 1519 | n: 2 |
---|
| 1520 | coupling: |
---|
| 1521 | term1: Z5/fZIRPp |
---|
| 1522 | term2: Z6/fZIRPp |
---|
| 1523 | total_microzooplankton_loss_to_DOC: |
---|
| 1524 | long_name: total microzooplankton loss to dissolved organic carbon |
---|
| 1525 | model: weighted_sum |
---|
| 1526 | parameters: |
---|
| 1527 | n: 2 |
---|
| 1528 | coupling: |
---|
| 1529 | term1: Z5/fZIRDc |
---|
| 1530 | term2: Z6/fZIRDc |
---|
| 1531 | total_microzooplankton_loss_to_DON: |
---|
| 1532 | long_name: total microzooplankton loss to dissolved organic nitrogen |
---|
| 1533 | model: weighted_sum |
---|
| 1534 | parameters: |
---|
| 1535 | n: 2 |
---|
| 1536 | coupling: |
---|
| 1537 | term1: Z5/fZIRDn |
---|
| 1538 | term2: Z6/fZIRDn |
---|
| 1539 | total_microzooplankton_loss_to_DOP: |
---|
| 1540 | long_name: total microzooplankton loss to dissolved organic phosphorus |
---|
| 1541 | model: weighted_sum |
---|
| 1542 | parameters: |
---|
| 1543 | n: 2 |
---|
| 1544 | coupling: |
---|
| 1545 | term1: Z5/fZIRDp |
---|
| 1546 | term2: Z6/fZIRDp |
---|
| 1547 | total_microzooplankton_respiration: |
---|
| 1548 | long_name: total microzooplankton respiration |
---|
| 1549 | model: weighted_sum |
---|
| 1550 | parameters: |
---|
| 1551 | n: 2 |
---|
| 1552 | coupling: |
---|
| 1553 | term1: Z5/fZIO3c |
---|
| 1554 | term2: Z6/fZIO3c |
---|
| 1555 | total_microzooplankton_loss_to_DIN: |
---|
| 1556 | long_name: total microzooplankton loss to dissolved inorganic nitrogen |
---|
| 1557 | model: weighted_sum |
---|
| 1558 | parameters: |
---|
| 1559 | n: 2 |
---|
| 1560 | coupling: |
---|
| 1561 | term1: Z5/fZINIn |
---|
| 1562 | term2: Z6/fZINIn |
---|
| 1563 | total_microzooplankton_loss_to_DIP: |
---|
| 1564 | long_name: total microzooplankton loss to dissolved inorganic phosphorus |
---|
| 1565 | model: weighted_sum |
---|
| 1566 | parameters: |
---|
| 1567 | n: 2 |
---|
| 1568 | coupling: |
---|
| 1569 | term1: Z5/fZINIp |
---|
| 1570 | term2: Z6/fZINIp |
---|
| 1571 | gross_calcification_rate: |
---|
| 1572 | long_name: gross calcification rate |
---|
| 1573 | model: weighted_sum |
---|
| 1574 | parameters: |
---|
| 1575 | n: 4 |
---|
| 1576 | coupling: |
---|
| 1577 | term1: P2/calcification |
---|
| 1578 | term2: Z4/calcification |
---|
| 1579 | term3: Z5/calcification |
---|
| 1580 | term4: Z6/calcification |
---|
| 1581 | ben_PON: |
---|
| 1582 | long_name: benthic particulate organic nitrogen |
---|
| 1583 | model: horizontal_weighted_sum |
---|
| 1584 | parameters: |
---|
| 1585 | n: 2 |
---|
| 1586 | coupling: |
---|
| 1587 | term1: Q6/n |
---|
| 1588 | term2: Q7/n |
---|
| 1589 | ben_POP: |
---|
| 1590 | long_name: benthic particulate organic phosphate |
---|
| 1591 | model: horizontal_weighted_sum |
---|
| 1592 | parameters: |
---|
| 1593 | n: 2 |
---|
| 1594 | coupling: |
---|
| 1595 | term1: Q6/p |
---|
| 1596 | term2: Q7/p |
---|
| 1597 | benthic_denitrification_ammonification: |
---|
| 1598 | long_name: benthic denitrification and ammonification |
---|
| 1599 | model: horizontal_weighted_sum |
---|
| 1600 | parameters: |
---|
| 1601 | n: 2 |
---|
| 1602 | coupling: |
---|
| 1603 | term1: ben_nit/jM3G4n |
---|
| 1604 | term2: ben_nit/jM3M4n |
---|
| 1605 | Y3_fphytoc: |
---|
| 1606 | long_name: benthic suspension feeder grazing of phytoplankton carbon |
---|
| 1607 | model: horizontal_weighted_sum |
---|
| 1608 | parameters: |
---|
| 1609 | n: 3 |
---|
| 1610 | coupling: |
---|
| 1611 | term1: Y3/fprey1c |
---|
| 1612 | term2: Y3/fprey2c |
---|
| 1613 | term3: Y3/fprey3c |
---|
| 1614 | Y3_fphyton: |
---|
| 1615 | long_name: benthic suspension feeder grazing of phytoplankton nitrogen |
---|
| 1616 | model: horizontal_weighted_sum |
---|
| 1617 | parameters: |
---|
| 1618 | n: 3 |
---|
| 1619 | coupling: |
---|
| 1620 | term1: Y3/fprey1n |
---|
| 1621 | term2: Y3/fprey2n |
---|
| 1622 | term3: Y3/fprey3n |
---|
| 1623 | Y3_fphytop: |
---|
| 1624 | long_name: benthic suspension feeder grazing of phytoplankton phosphorus |
---|
| 1625 | model: horizontal_weighted_sum |
---|
| 1626 | parameters: |
---|
| 1627 | n: 3 |
---|
| 1628 | coupling: |
---|
| 1629 | term1: Y3/fprey1p |
---|
| 1630 | term2: Y3/fprey2p |
---|
| 1631 | term3: Y3/fprey3p |
---|
| 1632 | Ymacro_fYG3c: |
---|
| 1633 | long_name: benthic macrofauna respiration |
---|
| 1634 | model: horizontal_weighted_sum |
---|
| 1635 | parameters: |
---|
| 1636 | n: 2 |
---|
| 1637 | coupling: |
---|
| 1638 | term1: Y2/fYG3c |
---|
| 1639 | term2: Y3/fYG3c |
---|
| 1640 | Ymacro_fYQPc: |
---|
| 1641 | long_name: benthic macrofauna loass to particulate organic carbon |
---|
| 1642 | model: horizontal_weighted_sum |
---|
| 1643 | parameters: |
---|
| 1644 | n: 2 |
---|
| 1645 | coupling: |
---|
| 1646 | term1: Y2/fYQPc |
---|
| 1647 | term2: Y3/fYQPc |
---|
| 1648 | Ymacro_fYQPn: |
---|
| 1649 | long_name: benthic macrofauna loass to particulate organic nitrogen |
---|
| 1650 | model: horizontal_weighted_sum |
---|
| 1651 | parameters: |
---|
| 1652 | n: 2 |
---|
| 1653 | coupling: |
---|
| 1654 | term1: Y2/fYQPn |
---|
| 1655 | term2: Y3/fYQPn |
---|
| 1656 | Ymacro_fYQPp: |
---|
| 1657 | long_name: benthic macrofauna loass to particulate organic phosphorus |
---|
| 1658 | model: horizontal_weighted_sum |
---|
| 1659 | parameters: |
---|
| 1660 | n: 2 |
---|
| 1661 | coupling: |
---|
| 1662 | term1: Y2/fYQPp |
---|
| 1663 | term2: Y3/fYQPp |
---|
| 1664 | Ymacro_fYKIn: |
---|
| 1665 | long_name: benthic macrofauna loass to dissolved inorganic nitrogen |
---|
| 1666 | model: horizontal_weighted_sum |
---|
| 1667 | parameters: |
---|
| 1668 | n: 2 |
---|
| 1669 | coupling: |
---|
| 1670 | term1: Y2/fYKIn |
---|
| 1671 | term2: Y3/fYKIn |
---|
| 1672 | Ymacro_fYK1p: |
---|
| 1673 | long_name: benthic macrofauna loass to dissolved inorganic phosphorus |
---|
| 1674 | model: horizontal_weighted_sum |
---|
| 1675 | parameters: |
---|
| 1676 | n: 2 |
---|
| 1677 | coupling: |
---|
| 1678 | term1: Y2/fYK1p |
---|
| 1679 | term2: Y3/fYK1p |
---|
| 1680 | Q6_remins: |
---|
| 1681 | long_name: benthic remineralisation of silicate |
---|
| 1682 | model: horizontal_weighted_sum |
---|
| 1683 | parameters: |
---|
| 1684 | n: 1 |
---|
| 1685 | weight1: 0.007 |
---|
| 1686 | coupling: |
---|
| 1687 | term1: Q6/s |
---|
| 1688 | net_PelBen_POC: |
---|
| 1689 | long_name: flux of particulate organic carbon from pelagic to benthos |
---|
| 1690 | model: horizontal_weighted_sum |
---|
| 1691 | parameters: |
---|
| 1692 | n: 17 |
---|
| 1693 | weight17: -1. |
---|
| 1694 | coupling: |
---|
| 1695 | term1: R4/dep1c |
---|
| 1696 | term2: R4/dep2c |
---|
| 1697 | term3: R6/dep1c |
---|
| 1698 | term4: R6/dep2c |
---|
| 1699 | term5: R8/dep1c |
---|
| 1700 | term6: R8/dep2c |
---|
| 1701 | term7: P1/dep1c |
---|
| 1702 | term8: P1/dep2c |
---|
| 1703 | term9: P1/dep3c |
---|
| 1704 | term10: P4/dep1c |
---|
| 1705 | term11: P4/dep2c |
---|
| 1706 | term12: P4/dep3c |
---|
| 1707 | term13: Y3/fprey1c |
---|
| 1708 | term14: Y3/fprey2c |
---|
| 1709 | term15: Y3/fprey3c |
---|
| 1710 | term16: Y3/fprey4c |
---|
| 1711 | term17: Q6/resuspension_flux_c |
---|
| 1712 | net_PelBen_PON: |
---|
| 1713 | long_name: flux of particulate organic nitrogen from pelagic to benthos |
---|
| 1714 | model: horizontal_weighted_sum |
---|
| 1715 | parameters: |
---|
| 1716 | n: 17 |
---|
| 1717 | weight17: -1. |
---|
| 1718 | coupling: |
---|
| 1719 | term1: R4/dep1n |
---|
| 1720 | term2: R4/dep2n |
---|
| 1721 | term3: R6/dep1n |
---|
| 1722 | term4: R6/dep2n |
---|
| 1723 | term5: R8/dep1n |
---|
| 1724 | term6: R8/dep2n |
---|
| 1725 | term7: P1/dep1n |
---|
| 1726 | term8: P1/dep2n |
---|
| 1727 | term9: P1/dep3n |
---|
| 1728 | term10: P4/dep1n |
---|
| 1729 | term11: P4/dep2n |
---|
| 1730 | term12: P4/dep3n |
---|
| 1731 | term13: Y3/fprey1n |
---|
| 1732 | term14: Y3/fprey2n |
---|
| 1733 | term15: Y3/fprey3n |
---|
| 1734 | term16: Y3/fprey4n |
---|
| 1735 | term17: Q6/resuspension_flux_n |
---|
| 1736 | net_PelBen_POP: |
---|
| 1737 | long_name: flux of particulate organic phosphorus from pelagic to benthos |
---|
| 1738 | model: horizontal_weighted_sum |
---|
| 1739 | parameters: |
---|
| 1740 | n: 17 |
---|
| 1741 | weight17: -1. |
---|
| 1742 | coupling: |
---|
| 1743 | term1: R4/dep1p |
---|
| 1744 | term2: R4/dep2p |
---|
| 1745 | term3: R6/dep1p |
---|
| 1746 | term4: R6/dep2p |
---|
| 1747 | term5: R8/dep1p |
---|
| 1748 | term6: R8/dep2p |
---|
| 1749 | term7: P1/dep1p |
---|
| 1750 | term8: P1/dep2p |
---|
| 1751 | term9: P1/dep3p |
---|
| 1752 | term10: P4/dep1p |
---|
| 1753 | term11: P4/dep2p |
---|
| 1754 | term12: P4/dep3p |
---|
| 1755 | term13: Y3/fprey1p |
---|
| 1756 | term14: Y3/fprey2p |
---|
| 1757 | term15: Y3/fprey3p |
---|
| 1758 | term16: Y3/fprey4p |
---|
| 1759 | term17: Q6/resuspension_flux_p |
---|
| 1760 | net_PelBen_POSi: |
---|
| 1761 | long_name: flux of particulate organic silicate from pelagic to benthos |
---|
| 1762 | model: horizontal_weighted_sum |
---|
| 1763 | parameters: |
---|
| 1764 | n: 6 |
---|
| 1765 | weight6: -1. |
---|
| 1766 | coupling: |
---|
| 1767 | term1: R6/dep1s |
---|
| 1768 | term2: R8/dep1s |
---|
| 1769 | term3: P1/dep1s |
---|
| 1770 | term4: Y3/fprey1s |
---|
| 1771 | term5: Y3/fprey4s |
---|
| 1772 | term6: Q6/resuspension_flux_s |
---|