| 1 | #!/bin/bash |
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| 2 | # Command line arguments: |
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| 3 | # 1: simulation year |
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| 4 | # |
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| 5 | |
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| 6 | INPUTPATH="/work/n01/n01/momme/AMM7-INPUTS" |
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| 7 | RUNPATH="/work/n01/n01/momme/AMM7" |
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| 8 | |
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| 9 | yn=$1 |
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| 10 | yb=$(( $yn-1 )) |
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| 11 | ya=$(( $yn+1 )) |
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| 12 | |
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| 13 | #rivers: |
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| 14 | if [ $(( yn % 4)) -ne 0 -o $(( yn % 100)) -eq 0 -a $(( yn % 400)) -ne 0 ] |
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| 15 | then |
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| 16 | ln -sf "$INPUTPATH"/RIVERS/rivers.ersem.nc "$RUNPATH"/rivers.nc |
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| 17 | else |
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| 18 | ln -sf "$INPUTPATH"/RIVERS/rivers.ersem.leap.nc "$RUNPATH"/rivers.nc |
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| 19 | fi |
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| 20 | |
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| 21 | #prepare folders for annual atmospheric and lateral forcings: |
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| 22 | mkdir -p "$RUNPATH"/fluxes |
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| 23 | rm -rf "$RUNPATH"/fluxes/CUT_ERAI_INCLUDE_MSLP_y????m??d??.nc |
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| 24 | mkdir -p "$RUNPATH"/bdy |
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| 25 | rm -rf "$RUNPATH"/bdy/amm7*_y????m??d??.nc |
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| 26 | |
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| 27 | for y in $yb $yn $ya |
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| 28 | do |
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| 29 | #Atmospheric deposition of nutrients: |
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| 30 | ln -sf "$INPUTPATH"/AtmosphericDeposition/AMM7-EMEP-NDeposition."$y".nc "$RUNPATH"/AMM7-EMEP-NDeposition_y"$y".nc |
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| 31 | #ln -sf "$INPUTPATH"/AtmosphericDeposition/AMM7-EMEP-NDeposition."$y".nc "$RUNPATH"/AMM7-EMEP-NDeposition.nc |
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| 32 | |
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| 33 | #atmospheric forcings: |
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| 34 | ln -sf "$INPUTPATH"/FLUXES/CUT_ERAI_INCLUDE_MSLP_y"$y"m??d??.nc "$RUNPATH"/fluxes/ |
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| 35 | |
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| 36 | #lateral boundary conditions: |
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| 37 | ln -sf "$INPUTPATH"/BDY/amm7_bdyT_y"$y"m??d??.nc "$RUNPATH"/bdy |
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| 38 | #ln -sf "$INPUTPATH"/BDY/amm7_bdyU_y"$y"m??d??.nc "$RUNPATH"/bdy #only needed id full baroclinic velocity fields are required |
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| 39 | #ln -sf "$INPUTPATH"/BDY/amm7_bdyV_y"$y"m??d??.nc "$RUNPATH"/bdy |
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| 40 | ln -sf "$INPUTPATH"/BDY/amm7_bt_bdyT_y"$y"m??d??.nc "$RUNPATH"/bdy/ |
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| 41 | ln -sf "$INPUTPATH"/BDY/amm7_bt_bdyU_y"$y"m??d??.nc "$RUNPATH"/bdy/ |
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| 42 | ln -sf "$INPUTPATH"/BDY/amm7_bt_bdyV_y"$y"m??d??.nc "$RUNPATH"/bdy/ |
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| 43 | if [ $y -lt 1990 -o $y -gt 2009 ] |
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| 44 | then |
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| 45 | ln -sf "$INPUTPATH"/BDY/amm7skag_bdyT_m??d??.nc "$RUNPATH"/bdy |
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| 46 | #ln -sf "$INPUTPATH"/BDY/amm7skag_bdyU_m??d??.nc "$RUNPATH"/bdy #only needed if full baroclinic velocity fields are required |
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| 47 | #ln -sf "$INPUTPATH"/BDY/amm7skag_bdyV_m??d??.nc "$RUNPATH"/bdy |
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| 48 | ln -sf "$INPUTPATH"/BDY/amm7skag_bt_bdyT_m??d??.nc "$RUNPATH"/bdy/ |
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| 49 | ln -sf "$INPUTPATH"/BDY/amm7skag_bt_bdyU_m??d??.nc "$RUNPATH"/bdy/ |
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| 50 | ln -sf "$INPUTPATH"/BDY/amm7skag_bt_bdyV_m??d??.nc "$RUNPATH"/bdy/ |
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| 51 | else |
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| 52 | ln -sf "$INPUTPATH"/BDY/amm7skag_bdyT_y"$y"m??d??.nc "$RUNPATH"/bdy |
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| 53 | #ln -sf "$INPUTPATH"/BDY/amm7skag_bdyU_y"$y"m??d??.nc "$RUNPATH"/bdy #only needed if full baroclinic velocity fields are required |
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| 54 | #ln -sf "$INPUTPATH"/BDY/amm7skag_bdyV_y"$y"m??d??.nc "$RUNPATH"/bdy |
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| 55 | ln -sf "$INPUTPATH"/BDY/amm7skag_bt_bdyT_y"$y"m??d??.nc "$RUNPATH"/bdy/ |
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| 56 | ln -sf "$INPUTPATH"/BDY/amm7skag_bt_bdyU_y"$y"m??d??.nc "$RUNPATH"/bdy/ |
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| 57 | ln -sf "$INPUTPATH"/BDY/amm7skag_bt_bdyV_y"$y"m??d??.nc "$RUNPATH"/bdy/ |
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| 58 | fi |
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| 59 | done |
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