1 | #!/bin/bash |
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2 | |
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3 | INPUTPATH="/work/n01/n01/momme/AMM7-INPUTS" |
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4 | RUNPATH="/work/n01/n01/momme/AMM7" |
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5 | CONFIGPATH="$HOME"/git/NEMO-shelf/NEMOGCM/CONFIG/AMM7_FABM_ERSEM |
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6 | |
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7 | #prepare folders for annual atmospheric and lateral forcings: |
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8 | |
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9 | mkdir -p "$RUNPATH"/fluxes |
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10 | rm -rf "$RUNPATH"/fluxes/flx_y????.nc |
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11 | rm -rf "$RUNPATH"/fluxes/met_y????.nc |
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12 | rm -rf "$RUNPATH"/fluxes/strd_y????.nc |
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13 | rm -rf "$RUNPATH"/fluxes/ssrd24_y????.nc |
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14 | |
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15 | mkdir -p "$RUNPATH"/bdy |
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16 | |
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17 | #namelists: |
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18 | #rsync -a "$CONFIGPATH"/EXP00/namelist*_cfg.template $RUNPATH/ |
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19 | #rsync -a "$CONFIGPATH"/EXP00/namelist*_ref $RUNPATH/ |
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20 | #rsync -a "$CONFIGPATH"/EXP00/namelist*_ref $RUNPATH/ |
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21 | #rsync -a "$CONFIGPATH"/EXP00/iodef.xml $RUNPATH/ |
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22 | #rsync -a "$CONFIGPATH"/EXP00/domain_def.xml $RUNPATH/ |
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23 | #rsync -a "$CONFIGPATH"/EXP00/field_def.xml $RUNPATH/ |
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24 | |
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25 | #atmospheric deposition: |
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26 | |
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27 | #ln -sf "$INPUTPATH"/AtmosphericDeposition/AMM7_atn_weights.nc "$RUNPATH"/ |
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28 | #ln -sf "$INPUTPATH"/AtmosphericDeposition/EMEP_atmosnuts_1980_2009.nc "$RUNPATH"/ |
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29 | # |
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30 | #grid: |
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31 | #ln -sf "$INPUTPATH"/GRID/coordinates.nc "$RUNPATH"/ |
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32 | ln -sf "$INPUTPATH"/GRID/AMM7_coordinates.nc "$RUNPATH"/coordinates.nc |
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33 | ln -sf "$INPUTPATH"/GRID/coordinates.bdy.nc "$RUNPATH"/ |
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34 | ln -sf "$INPUTPATH"/GRID/coordinates.skagbdy.nc "$RUNPATH"/ |
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35 | ln -sf "$INPUTPATH"/GRID/bathy_meter.nc "$RUNPATH"/ |
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36 | |
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37 | #Light: |
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38 | ln -sf "$INPUTPATH"/Light/AMM7-ADY-broadband.nc "$RUNPATH/" |
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39 | ln -sf "$INPUTPATH"/Light/kd490.nc "$RUNPATH/" |
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40 | |
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41 | #interpolation weigths for surface flux forcing: |
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42 | ln -sf "$INPUTPATH"/FLUXES/weights_erai_amm7_bicubic.nc "$RUNPATH"/fluxes/ |
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43 | ln -sf "$INPUTPATH"/FLUXES/weights_erai_amm7_bilin.nc "$RUNPATH"/fluxes/ |
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44 | ln -sf "$INPUTPATH"/FLUXES/CUT_ERAI_LSM.nc "$RUNPATH"/fluxes/ |
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45 | |
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46 | #lateral boundaries from climatology: |
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47 | ln -sf "$INPUTPATH"/BDY/amm7skagbdy_trc.lowP.nc "$RUNPATH"/amm7skagbdy_trc.nc |
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48 | #ln -sf "$INPUTPATH"/BDY/amm7bdy_trc.nc "$RUNPATH"/ |
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49 | ln -sf "$INPUTPATH"/BDY/amm7bdy_trc.lowP.nc "$RUNPATH"/amm7bdy_trc.nc |
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50 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_K1_grid_T.nc "$RUNPATH"/bdy/ |
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51 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_K1_grid_U.nc "$RUNPATH"/bdy/ |
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52 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_K1_grid_V.nc "$RUNPATH"/bdy/ |
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53 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_K2_grid_T.nc "$RUNPATH"/bdy/ |
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54 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_K2_grid_U.nc "$RUNPATH"/bdy/ |
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55 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_K2_grid_V.nc "$RUNPATH"/bdy/ |
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56 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_L2_grid_T.nc "$RUNPATH"/bdy/ |
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57 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_L2_grid_U.nc "$RUNPATH"/bdy/ |
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58 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_L2_grid_V.nc "$RUNPATH"/bdy/ |
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59 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_M2_grid_T.nc "$RUNPATH"/bdy/ |
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60 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_M2_grid_U.nc "$RUNPATH"/bdy/ |
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61 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_M2_grid_V.nc "$RUNPATH"/bdy/ |
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62 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_M4_grid_T.nc "$RUNPATH"/bdy/ |
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63 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_M4_grid_U.nc "$RUNPATH"/bdy/ |
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64 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_M4_grid_V.nc "$RUNPATH"/bdy/ |
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65 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_MU2_grid_T.nc "$RUNPATH"/bdy/ |
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66 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_MU2_grid_U.nc "$RUNPATH"/bdy/ |
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67 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_MU2_grid_V.nc "$RUNPATH"/bdy/ |
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68 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_2N2_grid_T.nc "$RUNPATH"/bdy/ |
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69 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_2N2_grid_U.nc "$RUNPATH"/bdy/ |
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70 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_2N2_grid_V.nc "$RUNPATH"/bdy/ |
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71 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_N2_grid_T.nc "$RUNPATH"/bdy/ |
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72 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_N2_grid_U.nc "$RUNPATH"/bdy/ |
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73 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_N2_grid_V.nc "$RUNPATH"/bdy/ |
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74 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_NU2_grid_T.nc "$RUNPATH"/bdy/ |
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75 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_NU2_grid_U.nc "$RUNPATH"/bdy/ |
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76 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_NU2_grid_V.nc "$RUNPATH"/bdy/ |
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77 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_O1_grid_T.nc "$RUNPATH"/bdy/ |
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78 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_O1_grid_U.nc "$RUNPATH"/bdy/ |
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79 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_O1_grid_V.nc "$RUNPATH"/bdy/ |
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80 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_P1_grid_T.nc "$RUNPATH"/bdy/ |
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81 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_P1_grid_U.nc "$RUNPATH"/bdy/ |
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82 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_P1_grid_V.nc "$RUNPATH"/bdy/ |
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83 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_Q1_grid_T.nc "$RUNPATH"/bdy/ |
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84 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_Q1_grid_U.nc "$RUNPATH"/bdy/ |
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85 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_Q1_grid_V.nc "$RUNPATH"/bdy/ |
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86 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_S1_grid_T.nc "$RUNPATH"/bdy/ |
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87 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_S1_grid_U.nc "$RUNPATH"/bdy/ |
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88 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_S1_grid_V.nc "$RUNPATH"/bdy/ |
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89 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_S2_grid_T.nc "$RUNPATH"/bdy/ |
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90 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_S2_grid_U.nc "$RUNPATH"/bdy/ |
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91 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_S2_grid_V.nc "$RUNPATH"/bdy/ |
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92 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_T2_grid_T.nc "$RUNPATH"/bdy/ |
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93 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_T2_grid_U.nc "$RUNPATH"/bdy/ |
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94 | ln -sf "$INPUTPATH"/BDY/amm7_bdytide_T2_grid_V.nc "$RUNPATH"/bdy/ |
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