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setUpConfiguration.sh in NEMO/branches/UKMO/AMM15_v3_6_STABLE_new_ersem/NEMOGCM/CONFIG/AMM7_FABM_ERSEM/EXP04 – NEMO

source: NEMO/branches/UKMO/AMM15_v3_6_STABLE_new_ersem/NEMOGCM/CONFIG/AMM7_FABM_ERSEM/EXP04/setUpConfiguration.sh @ 15814

Last change on this file since 15814 was 15480, checked in by jcastill, 3 years ago

Changes as in the git branch NEMO-FABMv1-ERSEM
  • Property svn:executable set to *
File size: 4.9 KB
Line 
1#!/bin/bash
2
3INPUTPATH="/work/n01/n01/momme/AMM7-INPUTS"
4RUNPATH="/work/n01/n01/momme/AMM7-v1"
5CONFIGPATH="$HOME"/git/NEMO-shelf/NEMOGCM/CONFIG/AMM7_FABM_ERSEM
6
7#prepare folders for annual atmospheric and lateral forcings:
8
9mkdir -p "$RUNPATH"/fluxes
10rm -rf "$RUNPATH"/fluxes/flx_y????.nc
11rm -rf "$RUNPATH"/fluxes/met_y????.nc
12rm -rf "$RUNPATH"/fluxes/strd_y????.nc
13rm -rf "$RUNPATH"/fluxes/ssrd24_y????.nc
14
15mkdir -p "$RUNPATH"/bdy
16
17#namelists:
18#rsync -a "$CONFIGPATH"/EXP00/namelist*_cfg.template $RUNPATH/
19#rsync -a "$CONFIGPATH"/EXP00/namelist*_ref $RUNPATH/
20#rsync -a "$CONFIGPATH"/EXP00/namelist*_ref $RUNPATH/
21#rsync -a "$CONFIGPATH"/EXP00/iodef.xml $RUNPATH/
22#rsync -a "$CONFIGPATH"/EXP00/domain_def.xml $RUNPATH/
23#rsync -a "$CONFIGPATH"/EXP00/field_def.xml $RUNPATH/
24
25#atmospheric deposition:
26
27#ln -sf "$INPUTPATH"/AtmosphericDeposition/AMM7_atn_weights.nc "$RUNPATH"/
28#ln -sf "$INPUTPATH"/AtmosphericDeposition/EMEP_atmosnuts_1980_2009.nc "$RUNPATH"/
29#
30
31#benthic topology:
32
33ln -sf "$INPUTPATH"/Topology/amm7_porosity.nc .
34ln -sf "$INPUTPATH"/Topology/amm7_permeability.nc .
35
36#grid:
37#ln -sf "$INPUTPATH"/GRID/coordinates.nc "$RUNPATH"/
38ln -sf "$INPUTPATH"/GRID/AMM7_coordinates.nc "$RUNPATH"/coordinates.nc
39ln -sf "$INPUTPATH"/GRID/coordinates.bdy.nc "$RUNPATH"/
40ln -sf "$INPUTPATH"/GRID/coordinates.skagbdy.nc "$RUNPATH"/
41ln -sf "$INPUTPATH"/GRID/bathy_meter.nc "$RUNPATH"/
42
43#Light:
44ln -sf "$INPUTPATH"/Light/AMM7-ADY-broadband.nc "$RUNPATH/"
45ln -sf "$INPUTPATH"/Light/kd490.nc "$RUNPATH/"
46
47#interpolation weigths for surface flux forcing:
48ln -sf "$INPUTPATH"/FLUXES/weights_erai_amm7_bicubic.nc "$RUNPATH"/fluxes/
49ln -sf "$INPUTPATH"/FLUXES/weights_erai_amm7_bilin.nc "$RUNPATH"/fluxes/
50ln -sf "$INPUTPATH"/FLUXES/CUT_ERAI_LSM.nc "$RUNPATH"/fluxes/
51
52#lateral boundaries from climatology:
53ln -sf "$INPUTPATH"/BDY/amm7skagbdy_trc.lowP.nc "$RUNPATH"/amm7skagbdy_trc.nc
54#ln -sf "$INPUTPATH"/BDY/amm7bdy_trc.nc "$RUNPATH"/
55ln -sf "$INPUTPATH"/BDY/amm7bdy_trc.lowP.nc "$RUNPATH"/amm7bdy_trc.nc
56ln -sf "$INPUTPATH"/BDY/amm7_bdytide_K1_grid_T.nc "$RUNPATH"/bdy/
57ln -sf "$INPUTPATH"/BDY/amm7_bdytide_K1_grid_U.nc "$RUNPATH"/bdy/
58ln -sf "$INPUTPATH"/BDY/amm7_bdytide_K1_grid_V.nc "$RUNPATH"/bdy/
59ln -sf "$INPUTPATH"/BDY/amm7_bdytide_K2_grid_T.nc "$RUNPATH"/bdy/
60ln -sf "$INPUTPATH"/BDY/amm7_bdytide_K2_grid_U.nc "$RUNPATH"/bdy/
61ln -sf "$INPUTPATH"/BDY/amm7_bdytide_K2_grid_V.nc "$RUNPATH"/bdy/
62ln -sf "$INPUTPATH"/BDY/amm7_bdytide_L2_grid_T.nc "$RUNPATH"/bdy/
63ln -sf "$INPUTPATH"/BDY/amm7_bdytide_L2_grid_U.nc "$RUNPATH"/bdy/
64ln -sf "$INPUTPATH"/BDY/amm7_bdytide_L2_grid_V.nc "$RUNPATH"/bdy/
65ln -sf "$INPUTPATH"/BDY/amm7_bdytide_M2_grid_T.nc "$RUNPATH"/bdy/
66ln -sf "$INPUTPATH"/BDY/amm7_bdytide_M2_grid_U.nc "$RUNPATH"/bdy/
67ln -sf "$INPUTPATH"/BDY/amm7_bdytide_M2_grid_V.nc "$RUNPATH"/bdy/
68ln -sf "$INPUTPATH"/BDY/amm7_bdytide_M4_grid_T.nc "$RUNPATH"/bdy/
69ln -sf "$INPUTPATH"/BDY/amm7_bdytide_M4_grid_U.nc "$RUNPATH"/bdy/
70ln -sf "$INPUTPATH"/BDY/amm7_bdytide_M4_grid_V.nc "$RUNPATH"/bdy/
71ln -sf "$INPUTPATH"/BDY/amm7_bdytide_MU2_grid_T.nc "$RUNPATH"/bdy/
72ln -sf "$INPUTPATH"/BDY/amm7_bdytide_MU2_grid_U.nc "$RUNPATH"/bdy/
73ln -sf "$INPUTPATH"/BDY/amm7_bdytide_MU2_grid_V.nc "$RUNPATH"/bdy/
74ln -sf "$INPUTPATH"/BDY/amm7_bdytide_2N2_grid_T.nc "$RUNPATH"/bdy/
75ln -sf "$INPUTPATH"/BDY/amm7_bdytide_2N2_grid_U.nc "$RUNPATH"/bdy/
76ln -sf "$INPUTPATH"/BDY/amm7_bdytide_2N2_grid_V.nc "$RUNPATH"/bdy/
77ln -sf "$INPUTPATH"/BDY/amm7_bdytide_N2_grid_T.nc "$RUNPATH"/bdy/
78ln -sf "$INPUTPATH"/BDY/amm7_bdytide_N2_grid_U.nc "$RUNPATH"/bdy/
79ln -sf "$INPUTPATH"/BDY/amm7_bdytide_N2_grid_V.nc "$RUNPATH"/bdy/
80ln -sf "$INPUTPATH"/BDY/amm7_bdytide_NU2_grid_T.nc "$RUNPATH"/bdy/
81ln -sf "$INPUTPATH"/BDY/amm7_bdytide_NU2_grid_U.nc "$RUNPATH"/bdy/
82ln -sf "$INPUTPATH"/BDY/amm7_bdytide_NU2_grid_V.nc "$RUNPATH"/bdy/
83ln -sf "$INPUTPATH"/BDY/amm7_bdytide_O1_grid_T.nc "$RUNPATH"/bdy/
84ln -sf "$INPUTPATH"/BDY/amm7_bdytide_O1_grid_U.nc "$RUNPATH"/bdy/
85ln -sf "$INPUTPATH"/BDY/amm7_bdytide_O1_grid_V.nc "$RUNPATH"/bdy/
86ln -sf "$INPUTPATH"/BDY/amm7_bdytide_P1_grid_T.nc "$RUNPATH"/bdy/
87ln -sf "$INPUTPATH"/BDY/amm7_bdytide_P1_grid_U.nc "$RUNPATH"/bdy/
88ln -sf "$INPUTPATH"/BDY/amm7_bdytide_P1_grid_V.nc "$RUNPATH"/bdy/
89ln -sf "$INPUTPATH"/BDY/amm7_bdytide_Q1_grid_T.nc "$RUNPATH"/bdy/
90ln -sf "$INPUTPATH"/BDY/amm7_bdytide_Q1_grid_U.nc "$RUNPATH"/bdy/
91ln -sf "$INPUTPATH"/BDY/amm7_bdytide_Q1_grid_V.nc "$RUNPATH"/bdy/
92ln -sf "$INPUTPATH"/BDY/amm7_bdytide_S1_grid_T.nc "$RUNPATH"/bdy/
93ln -sf "$INPUTPATH"/BDY/amm7_bdytide_S1_grid_U.nc "$RUNPATH"/bdy/
94ln -sf "$INPUTPATH"/BDY/amm7_bdytide_S1_grid_V.nc "$RUNPATH"/bdy/
95ln -sf "$INPUTPATH"/BDY/amm7_bdytide_S2_grid_T.nc "$RUNPATH"/bdy/
96ln -sf "$INPUTPATH"/BDY/amm7_bdytide_S2_grid_U.nc "$RUNPATH"/bdy/
97ln -sf "$INPUTPATH"/BDY/amm7_bdytide_S2_grid_V.nc "$RUNPATH"/bdy/
98ln -sf "$INPUTPATH"/BDY/amm7_bdytide_T2_grid_T.nc "$RUNPATH"/bdy/
99ln -sf "$INPUTPATH"/BDY/amm7_bdytide_T2_grid_U.nc "$RUNPATH"/bdy/
100ln -sf "$INPUTPATH"/BDY/amm7_bdytide_T2_grid_V.nc "$RUNPATH"/bdy/
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