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fabm.yaml

Last change on this file was 15480, checked in by jcastill, 3 years ago
Changes as in the git branch NEMO-FABMv1-ERSEM
File size: 63.4 KB

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1	check_conservation: false
2	require_initialization: true
3	instances:
4	zenithAngle:
5	model: ersem/zenith_angle
6	light:
7	model: ersem/light_iop_ady
8	parameters:
9	a0w: 0.03 # absorption coefficient of clear water (1/m), default = 0.036
10	b0w: 0.0015 # backscatter coefficient of clear water (1/m), default = 0.0016
11	pEIR_eow: 0.5 # photosynthetically active fraction of shortwave radiation (-), default = 0.5
12	relax: 0.143 # relaxation towards satellite gelbstoff absorption (1/d), default=0.033
13	initialization:
14	ADY: 0.05
15	N1:
16	long_name: phosphate
17	model: ersem/pelagic_base
18	parameters:
19	composition: p # elemental composition
20	c0: 0.001 # background carbon concentration (mg C/m^3), default = 0.0
21	initialization:
22	p: 0.4 # phosphorus (mmol P/m^3)
23	N3:
24	long_name: nitrate
25	model: ersem/pelagic_base
26	parameters:
27	composition: n # elemental composition
28	c0: 0.001 # background carbon concentration (mg C/m^3), default = 0.0
29	initialization:
30	n: 8.0 # nitrogen (mmol N/m^3)
31	N4:
32	long_name: ammonium
33	model: ersem/pelagic_base
34	parameters:
35	composition: n # elemental composition
36	c0: 0.001 # background carbon concentration (mg C/m^3), default = 0.0
37	initialization:
38	n: 0.1 # nitrogen (mmol N/m^3)
39	N5:
40	long_name: silicate
41	model: ersem/pelagic_base
42	parameters:
43	composition: s # elemental composition
44	s0: 0.0003 # background silicon concentration (mmol Si/m^3), default = 0.0
45	initialization:
46	s: 4.5 # silicate (mmol Si/m^3)
47	O2:
48	long_name: oxygen
49	model: ersem/oxygen
50	parameters:
51	ISWO2: 2 # saturation formulation (1: legacy ERSEM, 2: Weiss 1970)
52	initialization:
53	o: 300.0 # oxygen (mmol O_2/m^3)
54	O3:
55	long_name: carbonate
56	model: ersem/carbonate
57	parameters:
58	iswCO2: 1 # carbonate system diagnostics (0: off, 1: on), default = 1
59	iswASFLUX: 1 # air-sea CO2 exchange (0: none, 1: Nightingale and Liss, 2: Wanninkhof 1992 without chemical enhancement, 3: Wanninkhof 1992 with chemical enhancement, 4: Wanninkhof 1999), default = 1
60	iswtalk: 5 # alkalinity formulation (1-4: from salinity and temperature, 5: dynamic alkalinity), default = 5
61	#iswbioalk: 1
62	initialization:
63	c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3)
64	R1:
65	long_name: labile dissolved organic matter
66	model: ersem/pelagic_base
67	parameters:
68	composition: cnp # elemental composition
69	c0: 0.0034 # background carbon concentration (mg C/m^3), default = 0.0
70	initialization:
71	c: 10.0 # carbon (mg C/m^3)
72	n: 0.14 # nitrogen (mmol N/m^3)
73	p: 0.01 # phosphorus (mmol P/m^3)
74	R2:
75	long_name: semi-labile dissolved organic matter
76	model: ersem/pelagic_base
77	parameters:
78	composition: c # elemental composition
79	c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0
80	initialization:
81	c: 12.0 # carbon (mg C/m^3)
82	R3:
83	long_name: semi-refractory dissolved organic matter
84	model: ersem/pelagic_base
85	parameters:
86	composition: c # elemental composition
87	c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0
88	initialization:
89	c: 12.0 # carbon (mg C/m^3)
90	R4:
91	long_name: small-size pom
92	model: ersem/pelagic_base
93	parameters:
94	composition: cnpf # elemental composition
95	rm: 1.0 # sinking velocity (m/d), default = 0.0
96	ndeposition: 2 # number of target pools where the sedimentation flux goes (-)
97	qxc2: 0.1
98	qxn2: 0.1
99	qxp2: 0.06
100	c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0
101	initialization:
102	c: 7.2 # carbon (mg C/m^3)
103	n: 0.1 # nitrogen (mmol N/m^3)
104	p: 0.007 # phosphorus (mmol P/m^3)
105	coupling:
106	deposition_target1: Q6
107	deposition_target2: Q7
108	R6:
109	long_name: medium-size pom
110	model: ersem/pelagic_base
111	parameters:
112	composition: cnpsf # elemental composition
113	rm: 5.0 # sinking velocity (m/d), default = 0.0
114	ndeposition: 2 # number of target pools where the sedimentation flux goes (-)
115	qxc2: 0.1
116	qxn2: 0.1
117	qxp2: 0.06
118	qxs2: 0.0
119	c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0
120	initialization:
121	c: 17.0 # carbon (mg C/m^3)
122	n: 0.24 # nitrogen (mmol N/m^3)
123	p: 0.02 # phosphorus (mmol P/m^3)
124	s: 0.1 # silicate (mmol Si/m^3)
125	coupling:
126	deposition_target1: Q6
127	deposition_target2: Q7
128	R8:
129	long_name: large-size pom
130	model: ersem/pelagic_base
131	parameters:
132	composition: cnps # elemental composition
133	rm: 10.0 # sinking velocity (m/d), default = 0.0
134	ndeposition: 2 # number of target pools where the sedimentation flux goes (-)
135	qxc2: 0.1
136	qxn2: 0.1
137	qxp2: 0.06
138	qxs2: 0.0
139	c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0
140	initialization:
141	c: 0.17 # carbon (mg C/m^3)
142	n: 0.0024 # nitrogen (mmol N/m^3)
143	p: 0.0002 # phosphorus (mmol P/m^3)
144	s: 0.001 # silicate (mmol Si/m^3)
145	coupling:
146	deposition_target1: Q6
147	deposition_target2: Q7
148	Q1:
149	long_name: benthic dissolved organic matter
150	model: ersem/benthic_base
151	parameters:
152	composition: cnp
153	remin: 0.1
154	pN3: 0.9
155	initialization:
156	c: 0.001
157	n: 1.26e-05
158	p: 7.86e-07
159	coupling:
160	O3c: O3/c
161	N1p: N1/p
162	N3n: N3/n
163	N4n: N4/n
164	Q6:
165	long_name: benthic particulate organic matter
166	model: ersem/benthic_base
167	parameters:
168	composition: cnpsf
169	resuspension: true
170	remin: 0.05
171	pN3: 0.9
172	initialization:
173	c: 0.1
174	n: 0.00126
175	p: 7.86e-05
176	s: 0.001
177	coupling:
178	O3c: O3/c
179	N1p: N1/p
180	N3n: N3/n
181	N4n: N4/n
182	N5s: N5/s
183	RP: R6
184	Q7:
185	long_name: benthic refractory matter
186	model: ersem/benthic_base
187	parameters:
188	composition: cnp
189	remin: 0.01
190	pN3: 0.9
191	initialization:
192	c: 1.0e-01
193	n: 0.00126
194	p: 7.86e-05
195	coupling:
196	O3c: O3/c
197	N1p: N1/p
198	N3n: N3/n
199	N4n: N4/n
200	B1:
201	long_name: bacteria
202	model: ersem/bacteria_docdyn
203	parameters:
204	iswBlim: 2 # nutrient limitation (1: minimum of inorganic and organic availability, 2: additive availability)
205	q10: 2.0 # Q_10 temperature coefficient (-)
206	chdo: 0.31 # Michaelis-Menten constant for oxygen limitation (-)
207	chn: 0.5 # Michaelis-Menten constant for nitrate limitation (mmol N/m^3)
208	chp: 0.1 # Michaelis-Menten constant for phosphate limitation (mmol P/m^3)
209	sd: 0.05 # specific mortality at reference temperature (1/d)
210	sum: 2.2 # maximum specific uptake at reference temperature (1/d)
211	pu: 0.6 # efficiency at high oxygen levels (-)
212	puo: 0.2 # efficiency at low oxygen levels (-)
213	srs: 0.1 # specific rest respiration at reference temperature (1/d)
214	sR1: 1.0 # maximum turn-over rate of DOM (1/d), default = 1.0
215	qpc: 0.0019 # maximum phosphorus to carbon ratio (mmol P/mg C)
216	qnc: 0.0167 # maximum nitrogen to carbon ratio (mmol N/mg C)
217	ur_O2: 0.1 # oxygen consumed per carbon respired (mmol O_2/mg C)
218	sR1N1: 0.0 # mineralisation rate of labile dissolved organic phosphorus (1/d)
219	sR1N4: 0.0 # mineralisation rate of labile dissolved organic nitrogen (1/d)
220	fsink: 7e-05 # scavenging rate for iron (1/d)
221	c0: 0.01 # background carbon concentration (mg C/m^3)
222	nRP: 3 # number of substrates, default = 0
223	sRP1R1: 0.01 # remineralisation of substrate 1 to DOM (1/d)
224	sRP2R1: 0.0025 # remineralisation of substrate 2 to DOM (1/d)
225	sRP3R1: 0.001 # remineralisation of substrate 3 to DOM (1/d)
226	rR2: 0.0075 # fraction of semi-labile DOC available to bacteria (-)
227	rR3: 0.0025 # fraction of semi-refractory DOC available to bacteria (-)
228	frR3: 0.3 # fraction of activity respiration converted to semi-refractory DOC (-)
229	initialization:
230	c: 15.7 # carbon (mg C/m^3)
231	n: 0.26 # nitrogen (mmol N/m^3)
232	p: 0.029 # phosphorus (mmol P/m^3)
233	coupling:
234	RP1: R4
235	RP2: R6
236	RP3: R8
237	N1p: N1/p # phosphate (mmol P/m^3)
238	N4n: N4/n # ammonium (mmol N/m^3)
239	R1c: R1/c # labile dissolved organic carbon (mg C/m^3)
240	R1p: R1/p # labile dissolved organic phosphorus (mmol P/m^3)
241	R1n: R1/n # labile dissolved organic nitrogen (mmol N/m^3)
242	R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3)
243	R3c: R3/c # semi-refractory DOC (mg C/m^3)
244	O3c: O3/c # carbon dioxide (mmol C/m^3)
245	O2o: O2/o # oxygen (mmol O_2/m^3)
246	pel_nit:
247	long_name: pelagic nitrification
248	model: ersem/nitrification
249	parameters:
250	q10: 2.0 # Q_10 temperature coefficient (-)
251	ISWph: 1 # pH impact on nitrification (0: off, 1: on)
252	sN4N3: 0.5 # specific nitrification rate (1/d)
253	chN3o: 2700.0 # Michaelis-Menten constant for cubic oxygen dependence of nitrification ((mmol O_2/m^3)^3)
254	chN4n: 0.5 # Michaelis-Menten constant for cubic ammonium dependence of nitrification ((mmol N/m^3)^3), default = 0.0
255	coupling:
256	N3n: N3/n # nitrate (mmol N/m^3)
257	N4n: N4/n # ammonium (mmol N/m^3)
258	O2o: O2/o # oxygen (mmol O_2/m^3)
259	P1:
260	long_name: diatoms
261	model: ersem/primary_producer
262	parameters:
263	sum: 1.375 # maximum specific productivity at reference temperature (1/d)
264	q10: 2.0 # Q_10 temperature coefficient (-)
265	srs: 0.04 # specific rest respiration at reference temperature (1/d)
266	pu_ea: 0.2 # excreted fraction of primary production (-)
267	pu_ra: 0.2 # respired fraction of primary production (-)
268	qnlc: 0.0042 # minimum nitrogen to carbon ratio (mmol N/mg C)
269	qplc: 0.0001 # minimum phosphorus to carbon ratio (mmol P/mg C)
270	xqcp: 1.0 # threshold for phosphorus limitation (relative to Redfield ratio) (-)
271	xqcn: 1.0 # threshold for nitrogen limitation (relative to Redfield ratio) (-)
272	xqp: 2.0 # maximum phosphorus to carbon ratio (relative to Redfield ratio) (-)
273	xqn: 1.075 # maximum nitrogen to carbon ratio (relative to Redfield ratio) (-)
274	qun3: 0.0025 # nitrate affinity (m^3/mg C/d)
275	qun4: 0.0025 # ammonium affinity (m^3/mg C/d)
276	qurp: 0.003 # phosphate affinity (m^3/mg C/d)
277	snplux: 1.0 # specific tendency of luxury uptake of nutrients towards maximum quota (1/d), default = 1.0
278	use_Si: true # use silicate, default = false
279	qsc: 0.0118 # maximum silicate to carbon ratio (mmol Si/mg C)
280	chs: 0.2 # Michaelis-Menten constant for silicate limitation (mmol/m^3)
281	sdo: 0.05 # 1.1 of minimal specific lysis rate (1/d)
282	alpha: 4.0 # initial slope of PI-curve (mg C m^2/mg Chl/W/d)
283	beta: 0.07 # photoinhibition parameter (mg C m^2/mg Chl/W/d)
284	phim: 0.06 # maximum effective chlorophyll to carbon photosynthesis ratio (mg Chl/mg C)
285	Limnut: 1 # nitrogen-phosphorus colimitation formulation (0: geometric mean, 1: minimum, 2: harmonic mean)
286	docdyn: true # use dynamic ratio of labile to semi-labile DOM production, default = false
287	uB1c_O2: 0.11 # oxygen produced per unit of carbon fixed (mmol O_2/mg C)
288	urB1_O2: 0.1 # oxygen consumed per unit of carbon respired (mmol O_2/mg C)
289	iopABS: 0.007 # specific shortwave absorption (m^2/mg Chl), default = 0.008
290	iopBBS: 0.00048 # specific shortwave backscatter (m^2/mg Chl), default = 0.003
291	c0: 0.0001 # background carbon concentration (mg C/m^3), default = 0.0
292	resm: 5.0 # maximum nutrient-limitation-induced sinking velocity (m/d), default = 0.0
293	esni: 0.7 # level of nutrient limitation below which sinking commences (-)
294	cenh: false # enable atmospheric CO2 influence on photosynthesis, default = false
295	ndeposition: 3 # number of target pools for sedimentation, default = 1
296	qxc2: 0.2 # fraction of carbon sinking into deposition target 2 (-)
297	qxc3: 0.005 # fraction of carbon sinking into deposition target 3 (-)
298	qxn2: 0.2 # fraction of nitrogen sinking into deposition target 2 (-)
299	qxn3: 0.005 # fraction of nitrogen sinking into deposition target 3 (-)
300	qxp2: 0.24 # fraction of phosphorus sinking into deposition target 2 (-)
301	qxp3: 0.003 # fraction of phosphorus sinking into deposition target 3 (-)
302	qxs2: 0.0 # fraction of silicate sinking into deposition target 2 (-)
303	qxs3: 0.0 # fraction of silicate sinking into deposition target 3 (-)
304	initialization:
305	c: 8.0 # carbon (mg C/m^3)
306	n: 0.1114 # nitrogen (mmol N/m^3)
307	p: 0.009 # phosphorus (mmol P/m^3)
308	s: 0.128 # silicate (mmol Si/m^3)
309	Chl: 0.4 # chlorophyll a (mg/m^3)
310	coupling:
311	RP: R6
312	deposition_target1: Q6
313	deposition_target2: Q1
314	deposition_target3: Q7
315	N1p: N1/p # phosphate (mmol P/m^3)
316	N3n: N3/n # nitrate (mmol N/m^3)
317	N4n: N4/n # ammonium (mmol N/m^3)
318	N5s: N5/s # silicate (mmol Si/m^3)
319	R1c: R1/c # dissolved organic carbon (mg C/m^3)
320	R1p: R1/p # dissolved organic phosphorus (mmol P/m^3)
321	R1n: R1/n # dissolved organic nitrogen (mmol N/m^3)
322	R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3)
323	O2o: O2/o # oxygen (mmol O_2/m^3)
324	O3c: O3/c # carbon dioxide (mmol C/m^3)
325	P2:
326	long_name: nanophytoplankton
327	model: ersem/primary_producer
328	parameters:
329	sum: 1.625 # maximum specific productivity at reference temperature (1/d)
330	q10: 2.0 # Q_10 temperature coefficient (-)
331	srs: 0.04 # specific rest respiration at reference temperature (1/d)
332	pu_ea: 0.2 # excreted fraction of primary production (-)
333	pu_ra: 0.2 # respired fraction of primary production (-)
334	qnlc: 0.005 # minimum nitrogen to carbon ratio (mmol N/mg C)
335	qplc: 0.000225 # minimum phosphorus to carbon ratio (mmol P/mg C)
336	xqcp: 1.0 # threshold for phosphorus limitation (relative to Redfield ratio) (-)
337	xqcn: 1.0 # threshold for nitrogen limitation (relative to Redfield ratio) (-)
338	xqp: 2.0 # maximum phosphorus to carbon ratio (relative to Redfield ratio) (-)
339	xqn: 1.075 # maximum nitrogen to carbon ratio (relative to Redfield ratio) (-)
340	qun3: 0.004 # nitrate affinity (m^3/mg C/d)
341	qun4: 0.004 # ammonium affinity (m^3/mg C/d)
342	qurp: 0.004 # phosphate affinity (m^3/mg C/d)
343	snplux: 1.0 # specific tendency of luxury uptake of nutrients towards maximum quota (1/d), default = 1.0
344	use_Si: false # use silicate, default = false
345	sdo: 0.05 # 1.1 of minimal specific lysis rate (1/d)
346	alpha: 5.0 # initial slope of PI-curve (mg C m^2/mg Chl/W/d)
347	beta: 0.1 # photoinhibition parameter (mg C m^2/mg Chl/W/d)
348	phim: 0.025 # maximum effective chlorophyll to carbon photosynthesis ratio (mg Chl/mg C)
349	Limnut: 1 # nitrogen-phosphorus colimitation formulation (0: geometric mean, 1: minimum, 2: harmonic mean)
350	docdyn: true # use dynamic ratio of labile to semi-labile DOM production, default = false
351	uB1c_O2: 0.11 # oxygen produced per unit of carbon fixed (mmol O_2/mg C)
352	urB1_O2: 0.1 # oxygen consumed per unit of carbon respired (mmol O_2/mg C)
353	iopABS: 0.0041 # specific shortwave absorption (m^2/mg Chl), default = 0.008
354	iopBBS: 0.003 # specific shortwave backscatter (m^2/mg Chl), default = 0.003
355	c0: 0.001 # background carbon concentration (mg C/m^3), default = 0.0
356	calcify: true # calcify, default = false
357	resm: 0.0 # maximum nutrient-limitation-induced sinking velocity (m/d), default = 0.0
358	esni: 0.7 # level of nutrient limitation below which sinking commences (-)
359	cenh: false # enable atmospheric CO2 influence on photosynthesis, default = false
360	ndeposition: 3 # number of target pools for sedimentation, default = 1
361	qxc2: 0.5 # fraction of carbon sinking into deposition target 2 (-)
362	qxc3: 0.05 # fraction of carbon sinking into deposition target 3 (-)
363	qxn2: 0.5 # fraction of nitrogen sinking into deposition target 2 (-)
364	qxn3: 0.05 # fraction of nitrogen sinking into deposition target 3 (-)
365	qxp2: 0.6 # fraction of phosphorus sinking into deposition target 2 (-)
366	qxp3: 0.03 # fraction of phosphorus sinking into deposition target 3 (-)
367	initialization:
368	c: 5.9 # carbon (mg C/m^3)
369	n: 0.0926 # nitrogen (mmol N/m^3)
370	p: 0.0036 # phosphorus (mmol P/m^3)
371	Chl: 0.3 # chlorophyll a (mg/m^3)
372	coupling:
373	RP: R4
374	deposition_target1: Q6
375	deposition_target2: Q1
376	deposition_target3: Q7
377	N1p: N1/p # phosphate (mmol P/m^3)
378	N3n: N3/n # nitrate (mmol N/m^3)
379	N4n: N4/n # ammonium (mmol N/m^3)
380	R1c: R1/c # dissolved organic carbon (mg C/m^3)
381	R1p: R1/p # dissolved organic phosphorus (mmol P/m^3)
382	R1n: R1/n # dissolved organic nitrogen (mmol N/m^3)
383	R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3)
384	O2o: O2/o # oxygen (mmol O_2/m^3)
385	O3c: O3/c # carbon dioxide (mmol C/m^3)
386	RainR: L2/RainR # rain ratio (PIC : POC) (-)
387	L2c: L2/c # free calcite (mg C/m^3)
388	P3:
389	long_name: picophytoplankton
390	model: ersem/primary_producer
391	parameters:
392	sum: 2.0 # maximum specific productivity at reference temperature (1/d)
393	q10: 2.0 # Q_10 temperature coefficient (-)
394	srs: 0.045 # specific rest respiration at reference temperature (1/d)
395	pu_ea: 0.2 # excreted fraction of primary production (-)
396	pu_ra: 0.2 # respired fraction of primary production (-)
397	qnlc: 0.006 # minimum nitrogen to carbon ratio (mmol N/mg C)
398	qplc: 0.00035 # minimum phosphorus to carbon ratio (mmol P/mg C)
399	xqcp: 1.0 # threshold for phosphorus limitation (relative to Redfield ratio) (-)
400	xqcn: 1.0 # threshold for nitrogen limitation (relative to Redfield ratio) (-)
401	xqp: 1.5 # maximum phosphorus to carbon ratio (relative to Redfield ratio) (-)
402	xqn: 1.05 # maximum nitrogen to carbon ratio (relative to Redfield ratio) (-)
403	qun3: 0.006 # nitrate affinity (m^3/mg C/d)
404	qun4: 0.007 # ammonium affinity (m^3/mg C/d)
405	qurp: 0.006 # phosphate affinity (m^3/mg C/d)
406	snplux: 1.0 # specific tendency of luxuary uptake of nutrients towards maximum quoata (1/d)
407	use_Si: false # use silicate, default = false
408	sdo: 0.055 # 1.1 of minimal specific lysis rate (1/d)
409	alpha: 6.0 # initial slope of PI-curve (mg C m^2/mg Chl/W/d)
410	beta: 0.12 # photoinhibition parameter (mg C m^2/mg Chl/W/d)
411	phim: 0.015 # maximum effective chlorophyll to carbon photosynthesis ratio (mg Chl/mg C)
412	Limnut: 1 # nitrogen-phosphorus colimitation formulation (0: geometric mean, 1: minimum, 2: harmonic mean)
413	docdyn: true # use dynamic ratio of labile to semi-labile DOM production, default = false
414	uB1c_O2: 0.11 # oxygen produced per unit of carbon fixed (mmol O_2/mg C)
415	urB1_O2: 0.1 # oxygen consumed per unit of carbon respired (mmol O_2/mg C)
416	iopABS: 0.023 # specific shortwave absorption (m^2/mg Chl), default = 0.008
417	iopBBS: 0.003 # specific shortwave backscatter (m^2/mg Chl), default = 0.003
418	c0: 0.0088 # background carbon concentration (mg C/m^3), default = 0.0
419	resm: 0.0 # maximum nutrient-limitation-induced sinking velocity (m/d), default = 0.0
420	esni: 0.7 # level of nutrient limitation below which sinking commences (-)
421	cenh: false # enable atmospheric CO2 influence on photosynthesis, default = false
422	ndeposition: 3 # number of target pools for sedimentation, default = 1
423	qxc2: 0.5 # fraction of carbon sinking into deposition target 2 (-)
424	qxc3: 0.05 # fraction of carbon sinking into deposition target 3 (-)
425	qxn2: 0.5 # fraction of nitrogen sinking into deposition target 2 (-)
426	qxn3: 0.05 # fraction of nitrogen sinking into deposition target 3 (-)
427	qxp2: 0.6 # fraction of phosphorus sinking into deposition target 2 (-)
428	qxp3: 0.03 # fraction of phosphorus sinking into deposition target 3 (-)
429	initialization:
430	c: 5.9 # carbon (mg C/m^3)
431	n: 0.0926 # nitrogen (mmol N/m^3)
432	p: 0.0036 # phosphorus (mmol P/m^3)
433	Chl: 0.3 # chlorophyll a (mg/m^3)
434	coupling:
435	RP: R4
436	deposition_target1: Q6
437	deposition_target2: Q1
438	deposition_target3: Q7
439	N1p: N1/p # phosphate (mmol P/m^3)
440	N3n: N3/n # nitrate (mmol N/m^3)
441	N4n: N4/n # ammonium (mmol N/m^3)
442	R1c: R1/c # dissolved organic carbon (mg C/m^3)
443	R1p: R1/p # dissolved organic phosphorus (mmol P/m^3)
444	R1n: R1/n # dissolved organic nitrogen (mmol N/m^3)
445	R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3)
446	O2o: O2/o # oxygen (mmol O_2/m^3)
447	O3c: O3/c # carbon dioxide (mmol C/m^3)
448	P4:
449	long_name: microphytoplankton
450	model: ersem/primary_producer
451	parameters:
452	sum: 1.125 # maximum specific productivity at reference temperature (1/d)
453	q10: 2.0 # Q_10 temperature coefficient (-)
454	srs: 0.035 # specific rest respiration at reference temperature (1/d)
455	pu_ea: 0.2 # excreted fraction of primary production (-)
456	pu_ra: 0.2 # respired fraction of primary production (-)
457	qnlc: 0.0042 # minimum nitrogen to carbon ratio (mmol N/mg C)
458	qplc: 0.0001 # minimum phosphorus to carbon ratio (mmol P/mg C)
459	xqcp: 1.0 # threshold for phosphorus limitation (relative to Redfield ratio) (-)
460	xqcn: 1.0 # threshold for nitrogen limitation (relative to Redfield ratio) (-)
461	xqp: 2.7 # maximum phosphorus to carbon ratio (relative to Redfield ratio) (-)
462	xqn: 1.1 # maximum nitrogen to carbon ratio (relative to Redfield ratio) (-)
463	qun3: 0.002 # nitrate affinity (m^3/mg C/d)
464	qun4: 0.002 # ammonium affinity (m^3/mg C/d)
465	qurp: 0.002 # phosphate affinity (m^3/mg C/d)
466	snplux: 1.0 # specific tendency of luxuary uptake of nutrients towards maximum quoata (1/d)
467	use_Si: false # use silicate, default = false
468	sdo: 0.045 # 1.1 of minimal specific lysis rate (1/d)
469	alpha: 3.0 # initial slope of PI-curve (mg C m^2/mg Chl/W/d)
470	beta: 0.06 # photoinhibition parameter (mg C m^2/mg Chl/W/d)
471	phim: 0.045 # maximum effective chlorophyll to carbon photosynthesis ratio (mg Chl/mg C)
472	Limnut: 1 # nitrogen-phosphorus colimitation formulation (0: geometric mean, 1: minimum, 2: harmonic mean)
473	docdyn: true # use dynamic ratio of labile to semi-labile DOM production, default = false
474	uB1c_O2: 0.11 # oxygen produced per unit of carbon fixed (mmol O_2/mg C)
475	urB1_O2: 0.1 # oxygen consumed per unit of carbon respired (mmol O_2/mg C)
476	iopABS: 0.008 # specific shortwave absorption (m^2/mg Chl), default = 0.008
477	iopBBS: 0.00048 # specific shortwave backscatter (m^2/mg Chl), default = 0.003
478	c0: 0.0001 # background carbon concentration (mg C/m^3), default = 0.0
479	resm: 5.0 # maximum nutrient-limitation-induced sinking velocity (m/d), default = 0.0
480	esni: 0.7 # level of nutrient limitation below which sinking commences (-)
481	cenh: false # enable atmospheric CO2 influence on photosynthesis, default = false
482	ndeposition: 3 # number of target pools for sedimentation, default = 1
483	qxc2: 0.5 # fraction of carbon sinking into deposition target 2 (-)
484	qxc3: 0.05 # fraction of carbon sinking into deposition target 3 (-)
485	qxn2: 0.5 # fraction of nitrogen sinking into deposition target 2 (-)
486	qxn3: 0.05 # fraction of nitrogen sinking into deposition target 3 (-)
487	qxp2: 0.6 # fraction of phosphorus sinking into deposition target 2 (-)
488	qxp3: 0.03 # fraction of phosphorus sinking into deposition target 3 (-)
489	initialization:
490	c: 5.9 # carbon (mg C/m^3)
491	n: 0.0926 # nitrogen (mmol N/m^3)
492	p: 0.0036 # phosphorus (mmol P/m^3)
493	Chl: 0.3 # chlorophyll a (mg/m^3)
494	coupling:
495	RP: R6
496	deposition_target1: Q6
497	deposition_target2: Q1
498	deposition_target3: Q7
499	N1p: N1/p # phosphate (mmol P/m^3)
500	N3n: N3/n # nitrate (mmol N/m^3)
501	N4n: N4/n # ammonium (mmol N/m^3)
502	R1c: R1/c # dissolved organic carbon (mg C/m^3)
503	R1p: R1/p # dissolved organic phosphorus (mmol P/m^3)
504	R1n: R1/n # dissolved organic nitrogen (mmol N/m^3)
505	R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3)
506	O2o: O2/o # oxygen (mmol O_2/m^3)
507	O3c: O3/c # carbon dioxide (mmol C/m^3)
508	Z4:
509	long_name: mesozooplankton
510	model: ersem/mesozooplankton
511	parameters:
512	q10: 2.0 # Q_10 temperature coefficient (-)
513	minfood: 12.0 # Michaelis-Menten constant to perceive food (mg C/m^3)
514	chuc: 36.0 # Michaelis-Menten constant for food uptake (mg C/m^3)
515	sum: 1.0 # maximum specific uptake at reference temperature (1/d)
516	pu: 0.6 # assimilation efficiency (-)
517	pu_ea: 0.5 # fraction of unassimilated prey that is excreted (not respired) (-)
518	pu_eaR: 0.9 # fraction of unassimilated detritus that is excreted (not respired) (-)
519	pe_R1: 0.5 # dissolved fraction of excreted/dying matter (-)
520	srs: 0.015 # specific rest respiration at reference temperature (1/d)
521	sd: 0.05 # basal mortality (1/d)
522	sdo: 0.2 # maximum mortality due to oxygen limitation (1/d)
523	chro: 7.81 # Michaelis-Menten constant for oxygen limitation (-)
524	qpc: 0.000786 # phosphorus to carbon ratio (mmol P/mg C)
525	qnc: 0.0126 # nitrogen to carbon ratio (mmol N/mg C)
526	Minprey: 300.0 # food threshold for overwintering state (mg C/m^2)
527	repw: 0.0025 # specific overwintering respiration (1/d)
528	mort: 0.0025 # specific overwintering mortality (1/d)
529	R1R2: 1.0 # labile fraction of produced dissolved organic carbon (-)
530	xR1p: 1.2 # transfer of phosphorus to DOM, relative to POM (-), default = 0.0
531	xR1n: 1.0 # transfer of nitrogen to DOM, relative to POM (-), default = 0.0
532	urB1_O2: 0.1 # oxygen consumed per carbon respired (mmol O_2/mg C)
533	gutdiss: 0.5 # fraction of prey calcite that dissolves after ingestion (-)
534	c0: 0.0033 # background concentration (mg C/m^3)
535	nprey: 9 # number of prey types, default = 0
536	suprey1: 0.15 # relative affinity for prey type 1 (-)
537	suprey2: 0.05 # relative affinity for prey type 2 (-)
538	suprey3: 0.0 # relative affinity for prey type 3 (-)
539	suprey4: 0.15 # relative affinity for prey type 4 (-)
540	suprey5: 0.25 # relative affinity for prey type 5 (-)
541	suprey6: 0.25 # relative affinity for prey type 6 (-)
542	suprey7: 0.05 # relative affinity for prey type 7 (-)
543	suprey8: 0.0 # relative affinity for prey type 8 (-)
544	suprey9: 0.1 # relative affinity for prey type 9 (-)
545	prey9ispom: true # prey type 9 is detritus, default = false
546	initialization:
547	c: 1.2 # carbon (mg C/m^3)
548	coupling:
549	prey1: P1
550	prey2: P2
551	prey3: P3
552	prey4: P4
553	prey5: Z4
554	prey6: Z5
555	prey7: Z6
556	prey8: B1
557	prey9: R6
558	RP: R8
559	N1p: N1/p # phosphate (mmol P/m^3)
560	N4n: N4/n # ammonium (mmol N/m^3)
561	R1c: R1/c # dissolved organic carbon (mg C/m^3)
562	R1p: R1/p # dissolved organic phosphorus (mmol P/m^3)
563	R1n: R1/n # dissolved organic nitrogen (mmol N/m^3)
564	R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3)
565	O2o: O2/o # oxygen source (mmol O_2/m^3)
566	O3c: O3/c # carbon dioxide sink (mmol C/m^3)
567	L2c: L2/c # calcite (mg C/m^3)
568	Z5:
569	long_name: microzooplankton
570	model: ersem/microzooplankton
571	parameters:
572	q10: 2.0 # Q_10 temperature coefficient (-)
573	minfood: 12.0 # Michaelis-Menten constant to perceive food (mg C/m^3)
574	chuc: 32.0 # Michaelis-Menten constant for food uptake (mg C/m^3)
575	sum: 1.25 # maximum specific uptake at reference temperature (1/d)
576	pu: 0.5 # assimilation efficiency (-)
577	pu_ea: 0.5 # fraction of unassimilated prey that is excreted (not respired) (-)
578	pe_R1: 0.5 # dissolved fraction of excreted/dying matter (-)
579	srs: 0.02 # specific rest respiration at reference temperature (1/d)
580	sd: 0.05 # basal mortality (1/d)
581	sdo: 0.25 # maximum mortality due to oxygen limitation (1/d)
582	chro: 7.81 # Michaelis-Menten constant for oxygen limitation (-)
583	qpc: 0.001 # maximum phosphorus to carbon ratio (mmol P/mg C)
584	qnc: 0.0167 # maximum nitrogen to carbon ratio (mmol N/mg C)
585	stempp: 0.5 # specific excretion rate of excess phosphorus (1/d)
586	stempn: 0.5 # specific excretion rate of excess nitrogen (1/d)
587	R1R2: 1.0 # labile fraction of produced dissolved organic carbon (-)
588	xR1p: 1.2 # transfer of phosphorus to DOM, relative to POM (-), default = 1.0
589	xR1n: 1.0 # transfer of nitrogen to DOM, relative to POM (-), default = 1.0
590	urB1_O2: 0.1 # oxygen consumed per carbon respired (mmol O_2/mg C)
591	gutdiss: 0.5 # fraction of prey calcite that dissolves after ingestion (-)
592	c0: 0.0033 # background concentration (mg C/m^3)
593	nprey: 7 # number of prey types, default = 0
594	suprey1: 0.1 # relative affinity for prey type 1 (-)
595	suprey2: 0.15 # relative affinity for prey type 2 (-)
596	suprey3: 0.15 # relative affinity for prey type 3 (-)
597	suprey4: 0.15 # relative affinity for prey type 4 (-)
598	suprey5: 0.1 # relative affinity for prey type 5 (-)
599	suprey6: 0.15 # relative affinity for prey type 6 (-)
600	suprey7: 0.2 # relative affinity for prey type 7 (-)
601	initialization:
602	c: 7.2 # carbon (mg C/m^3)
603	n: 0.12 # nitrogen (mmol N/m^3)
604	p: 0.0113 # phosphorus (mmol P/m^3)
605	coupling:
606	prey1: B1
607	prey2: P1
608	prey3: P2
609	prey4: P3
610	prey5: P4
611	prey6: Z5
612	prey7: Z6
613	RP: R6
614	N1p: N1/p # phosphate (mmol P/m^3)
615	N4n: N4/n # ammonium (mmol N/m^3)
616	R1c: R1/c # dissolved organic carbon (mg C/m^3)
617	R1p: R1/p # dissolved organic phosphorus (mmol P/m^3)
618	R1n: R1/n # dissolved organic nitrogen (mmol N/m^3)
619	R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3)
620	O2o: O2/o # oxygen source (mmol O_2/m^3)
621	O3c: O3/c # carbon dioxide sink (mmol C/m^3)
622	L2c: L2/c # calcite (mg C/m^3)
623	Z6:
624	long_name: nanoflagellates
625	model: ersem/microzooplankton
626	parameters:
627	q10: 2.0 # Q_10 temperature coefficient (-)
628	minfood: 12.0 # Michaelis-Menten constant to perceive food (mg C/m^3)
629	chuc: 28.0 # Michaelis-Menten constant for food uptake (mg C/m^3)
630	sum: 1.5 # maximum specific uptake at reference temperature (1/d)
631	pu: 0.4 # assimilation efficiency (-)
632	pu_ea: 0.5 # fraction of unassimilated prey that is excreted (not respired) (-)
633	pe_R1: 0.5 # dissolved fraction of excreted/dying matter (-)
634	srs: 0.025 # specific rest respiration at reference temperature (1/d)
635	sd: 0.05 # basal mortality (1/d)
636	sdo: 0.3 # maximum mortality due to oxygen limitation (1/d)
637	chro: 7.81 # Michaelis-Menten constant for oxygen limitation (-)
638	qpc: 0.001 # maximum phosphorus to carbon ratio (mmol P/mg C)
639	qnc: 0.0167 # maximum nitrogen to carbon ratio (mmol N/mg C)
640	stempp: 0.5 # specific excretion rate of excess phosphorus (1/d)
641	stempn: 0.5 # specific excretion rate of excess nitrogen (1/d)
642	R1R2: 1.0 # labile fraction of produced dissolved organic carbon (-)
643	xR1p: 1.2 # transfer of phosphorus to DOM, relative to POM (-), default = 1.0
644	xR1n: 1.0 # transfer of nitrogen to DOM, relative to POM (-), default = 1.0
645	urB1_O2: 0.1 # oxygen consumed per carbon respired (mmol O_2/mg C)
646	gutdiss: 0.5 # fraction of prey calcite that dissolves after ingestion (-)
647	c0: 0.0033 # background concentration (mg C/m^3)
648	nprey: 4 # number of prey types, default = 0
649	suprey1: 0.45 # relative affinity for prey type 1 (-)
650	suprey2: 0.15 # relative affinity for prey type 2 (-)
651	suprey3: 0.25 # relative affinity for prey type 3 (-)
652	suprey4: 0.15 # relative affinity for prey type 4 (-)
653	initialization:
654	c: 2.421 # carbon (mg C/m^3)
655	n: 0.0505 # nitrogen (mmol N/m^3)
656	p: 0.047 # phosphorus (mmol P/m^3)
657	coupling:
658	prey1: B1
659	prey2: P2
660	prey3: P3
661	prey4: Z6
662	RP: R4
663	N1p: N1/p # phosphate (mmol P/m^3)
664	N4n: N4/n # ammonium (mmol N/m^3)
665	R1c: R1/c # dissolved organic carbon (mg C/m^3)
666	R1p: R1/p # dissolved organic phosphorus (mmol P/m^3)
667	R1n: R1/n # dissolved organic nitrogen (mmol N/m^3)
668	R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3)
669	RPs: R6/s # particulate organic silicate (mmol Si/m^3)
670	O2o: O2/o # oxygen source (mmol O_2/m^3)
671	O3c: O3/c # carbon dioxide sink (mmol C/m^3)
672	L2c: L2/c # calcite (mg C/m^3)
673	L2:
674	long_name: calcite
675	model: ersem/calcification
676	parameters:
677	iswcal: 1 # calcification/dissolution dependence on calcite saturation (1: power law, 2: hyperbolic)
678	ncalc: 0.81 # power of the calcification law (Ridgwell et al. 2007, mineral calcite) (-)
679	ndiss: 2.22 # power of the dissolution law (Keir 1980) (-)
680	Rain0: 0.6 # maximum rain ratio from PISCES (-)
681	sedL2: 10.0 # sinking velocity (m/d)
682	sL2O3: 0.03 # maximum specific dissolution rate (1/d), default = 1.0
683	c0: 1e-05 # background concentration (mg C/m^3), default = 0.0
684	ndeposition: 1 # number of target pools for sedimentation, default = 1
685	initialization:
686	c: 0.05 # carbon (mg C/m^3)
687	coupling:
688	deposition_target1: bL2
689	om_cal: O3/Om_cal # calcite saturation (-)
690	O3c: O3/c # total dissolved inorganic carbon (mmol C/m^3)
691	bL2:
692	long_name: benthic calcite
693	model: ersem/benthic_base
694	parameters:
695	composition: c # elemental composition
696	remin: 0.05 # remineralisation rate (1/d), default = 0.0
697	c0: 1.e-05 # background value for benthic calcite
698	initialization:
699	c: 0.05 # carbon (mg C/m^2)
700	coupling:
701	O3c: O3/c # dissolved inorganic carbon (mmol/m^3)
702	#Inputs:
703	pco2a:
704	model: horizontal_constant
705	parameters:
706	value: 385
707	standard_name: mole_fraction_of_carbon_dioxide_in_air
708	N3_flux:
709	model: external_surface_flux
710	coupling:
711	target: N3/n
712	N4_flux:
713	model: external_surface_flux
714	coupling:
715	target: N4/n
716	#Diagnostics:
717	PON:
718	long_name: particulate organic nitrogen
719	model: weighted_sum
720	parameters:
721	n: 11
722	weight5: 0.0126
723	coupling:
724	term1: P1/n
725	term2: P2/n
726	term3: P3/n
727	term4: P4/n
728	term5: Z4/c
729	term6: Z5/n
730	term7: Z6/n
731	term8: B1/n
732	term9: R4/n
733	term10: R6/n
734	term11: R8/n
735	POP:
736	long_name: particulate organic phosphorus
737	model: weighted_sum
738	parameters:
739	n: 11
740	weight5: 0.000786
741	coupling:
742	term1: P1/p
743	term2: P2/p
744	term3: P3/p
745	term4: P4/p
746	term5: Z4/c
747	term6: Z5/p
748	term7: Z6/p
749	term8: B1/p
750	term9: R4/p
751	term10: R6/p
752	term11: R8/p
753	POSi:
754	model: weighted_sum
755	parameters:
756	n: 3
757	coupling:
758	term1: P1/s
759	term2: R6/s
760	term3: R8/s
761	P1_fPIRIc:
762	long_name: diatom loss to organic carbon
763	model: weighted_sum
764	parameters:
765	n: 3
766	coupling:
767	term1: P1/fPIR1c
768	term2: P1/fPIR2c
769	term3: P1/fPIRPc
770	P2_fPIRIc:
771	long_name: nanophytoplankton loss to organic carbon
772	model: weighted_sum
773	parameters:
774	n: 3
775	coupling:
776	term1: P2/fPIR1c
777	term2: P2/fPIR2c
778	term3: P2/fPIRPc
779	P3_fPIRIc:
780	long_name: picophytoplankton loss to organic carbon
781	model: weighted_sum
782	parameters:
783	n: 3
784	coupling:
785	term1: P3/fPIR1c
786	term2: P3/fPIR2c
787	term3: P3/fPIRPc
788	P4_fPIRIc:
789	long_name: microphytoplankton loss to organic carbon
790	model: weighted_sum
791	parameters:
792	n: 3
793	coupling:
794	term1: P4/fPIR1c
795	term2: P4/fPIR2c
796	term3: P4/fPIRPc
797	phytoplankton_loss_to_labile_DOC:
798	long_name: phytoplankton loss to labile dissolved organic carbon
799	model: weighted_sum
800	parameters:
801	n: 4
802	coupling:
803	term1: P1/fPIR1c
804	term2: P2/fPIR1c
805	term3: P3/fPIR1c
806	term4: P4/fPIR1c
807	phytoplankton_loss_to_labile_DON:
808	long_name: phytoplankton loss to labile dissolved organic nitrogen
809	model: weighted_sum
810	parameters:
811	n: 4
812	coupling:
813	term1: P1/fPIR1n
814	term2: P2/fPIR1n
815	term3: P3/fPIR1n
816	term4: P4/fPIR1n
817	phytoplankton_loss_to_labile_DOP:
818	long_name: phytoplankton loss to labile dissolved organic phosphorus
819	model: weighted_sum
820	parameters:
821	n: 4
822	coupling:
823	term1: P1/fPIR1p
824	term2: P2/fPIR1p
825	term3: P3/fPIR1p
826	term4: P4/fPIR1p
827	phytoplankton_loss_to_non_labile_DOC:
828	long_name: phytoplankton loss to non-labile dissolved organic carbon
829	model: weighted_sum
830	parameters:
831	n: 4
832	coupling:
833	term1: P1/fPIR2c
834	term2: P2/fPIR2c
835	term3: P3/fPIR2c
836	term4: P4/fPIR2c
837	phytoplankton_loss_to_POC:
838	long_name: phytoplankton loss to particulate organic carbon
839	model: weighted_sum
840	parameters:
841	n: 4
842	coupling:
843	term1: P1/fPIRPc
844	term2: P2/fPIRPc
845	term3: P3/fPIRPc
846	term4: P4/fPIRPc
847	phytoplankton_loss_to_PON:
848	long_name: phytoplankton loss to particulate organic nitrogen
849	model: weighted_sum
850	parameters:
851	n: 4
852	coupling:
853	term1: P1/fPIRPn
854	term2: P2/fPIRPn
855	term3: P3/fPIRPn
856	term4: P4/fPIRPn
857	phytoplankton_loss_to_POP:
858	long_name: phytoplankton loss to particulate organic phosphorus
859	model: weighted_sum
860	parameters:
861	n: 4
862	coupling:
863	term1: P1/fPIRPp
864	term2: P2/fPIRPp
865	term3: P3/fPIRPp
866	term4: P4/fPIRPp
867	phytoplankton_uptake_oxN:
868	long_name: phytoplankton uptake of oxidized nitrogen
869	model: weighted_sum
870	parameters:
871	n: 4
872	coupling:
873	term1: P1/fN3PIn
874	term2: P2/fN3PIn
875	term3: P3/fN3PIn
876	term4: P4/fN3PIn
877	phytoplankton_uptake_redN:
878	long_name: phytoplankton uptake of reduced nitrogen
879	model: weighted_sum
880	parameters:
881	n: 4
882	coupling:
883	term1: P1/fN4PIn
884	term2: P2/fN4PIn
885	term3: P3/fN4PIn
886	term4: P4/fN4PIn
887	phytoplankton_uptake_DIP:
888	long_name: phytoplankton uptake of dissolved inorganic phosphorus
889	model: weighted_sum
890	parameters:
891	n: 4
892	coupling:
893	term1: P1/fN1PIp
894	term2: P2/fN1PIp
895	term3: P3/fN1PIp
896	term4: P4/fN1PIp
897	Z4_fphytoc:
898	long_name: mesozooplankton grazing of phytoplankton carbon
899	model: weighted_sum
900	parameters:
901	n: 4
902	coupling:
903	term1: Z4/fprey1c
904	term2: Z4/fprey2c
905	term3: Z4/fprey3c
906	term4: Z4/fprey4c
907	Z4_fphyton:
908	long_name: mesozooplankton grazing of phytoplankton nitrogen
909	model: weighted_sum
910	parameters:
911	n: 4
912	coupling:
913	term1: Z4/fprey1n
914	term2: Z4/fprey2n
915	term3: Z4/fprey3n
916	term4: Z4/fprey4n
917	Z4_fphytop:
918	long_name: mesozooplankton grazing of phytoplankton phosphorus
919	model: weighted_sum
920	parameters:
921	n: 4
922	coupling:
923	term1: Z4/fprey1p
924	term2: Z4/fprey2p
925	term3: Z4/fprey3p
926	term4: Z4/fprey4p
927	Z4_fzooc:
928	long_name: mesozooplankton predation of phytoplankton carbon
929	model: weighted_sum
930	parameters:
931	n: 3
932	coupling:
933	term1: Z4/fprey5c
934	term2: Z4/fprey6c
935	term3: Z4/fprey7c
936	Z4_fzoon:
937	long_name: mesozooplankton predation of phytoplankton nitrogen
938	model: weighted_sum
939	parameters:
940	n: 3
941	coupling:
942	term1: Z4/fprey5n
943	term2: Z4/fprey6n
944	term3: Z4/fprey7n
945	Z4_fzoop:
946	long_name: mesozooplankton predation of zooplankton phosphorus
947	model: weighted_sum
948	parameters:
949	n: 3
950	coupling:
951	term1: Z4/fprey5p
952	term2: Z4/fprey6p
953	term3: Z4/fprey7p
954	Z5_fphytoc:
955	long_name: microzooplankton grazing of phytoplankton carbon
956	model: weighted_sum
957	parameters:
958	n: 4
959	coupling:
960	term1: Z5/fprey2c
961	term2: Z5/fprey3c
962	term3: Z5/fprey4c
963	term4: Z5/fprey5c
964	Z5_fphyton:
965	long_name: microzooplankton grazing of phytoplankton nitrogen
966	model: weighted_sum
967	parameters:
968	n: 4
969	coupling:
970	term1: Z5/fprey2n
971	term2: Z5/fprey3n
972	term3: Z5/fprey4n
973	term4: Z5/fprey5n
974	Z5_fphytop:
975	long_name: microzooplankton grazing of phytoplankton phosphorus
976	model: weighted_sum
977	parameters:
978	n: 4
979	coupling:
980	term1: Z5/fprey2p
981	term2: Z5/fprey3p
982	term3: Z5/fprey4p
983	term4: Z5/fprey5p
984	Z5_fzooc:
985	long_name: microzooplankton predation of zooplankton carbon
986	model: weighted_sum
987	parameters:
988	n: 2
989	coupling:
990	term1: Z5/fprey6c
991	term2: Z5/fprey7c
992	Z5_fzoon:
993	long_name: microzooplankton predation of zooplankton nitrogen
994	model: weighted_sum
995	parameters:
996	n: 2
997	coupling:
998	term1: Z5/fprey6n
999	term2: Z5/fprey7n
1000	Z5_fzoop:
1001	long_name: microzooplankton predation of zooplankton phosphorus
1002	model: weighted_sum
1003	parameters:
1004	n: 2
1005	coupling:
1006	term1: Z5/fprey6p
1007	term2: Z5/fprey7p
1008	Z6_fphytoc:
1009	long_name: heterotrophic flagellate grazing of phytoplankton carbon
1010	model: weighted_sum
1011	parameters:
1012	n: 2
1013	coupling:
1014	term1: Z6/fprey2c
1015	term2: Z6/fprey3c
1016	Z6_fphyton:
1017	long_name: heterotrophic flagellate grazing of phytoplankton nitrogen
1018	model: weighted_sum
1019	parameters:
1020	n: 2
1021	coupling:
1022	term1: Z6/fprey2n
1023	term2: Z6/fprey3n
1024	Z6_fphytop:
1025	long_name: heterotrophic flagellate grazing of phytoplankton phosphorus
1026	model: weighted_sum
1027	parameters:
1028	n: 2
1029	coupling:
1030	term1: Z6/fprey2p
1031	term2: Z6/fprey3p
1032	total_microzooplankton_loss_to_POC:
1033	long_name: total microzooplankton loss to particulate organic carbon
1034	model: weighted_sum
1035	parameters:
1036	n: 2
1037	coupling:
1038	term1: Z5/fZIRPc
1039	term2: Z6/fZIRPc
1040	total_microzooplankton_loss_to_PON:
1041	long_name: total microzooplankton loss to particulate organic nitrogen
1042	model: weighted_sum
1043	parameters:
1044	n: 2
1045	coupling:
1046	term1: Z5/fZIRPn
1047	term2: Z6/fZIRPn
1048	total_microzooplankton_loss_to_POP:
1049	long_name: total microzooplankton loss to particulate organic phosphorus
1050	model: weighted_sum
1051	parameters:
1052	n: 2
1053	coupling:
1054	term1: Z5/fZIRPp
1055	term2: Z6/fZIRPp
1056	total_microzooplankton_loss_to_DOC:
1057	long_name: total microzooplankton loss to dissolved organic carbon
1058	model: weighted_sum
1059	parameters:
1060	n: 2
1061	coupling:
1062	term1: Z5/fZIRDc
1063	term2: Z6/fZIRDc
1064	total_microzooplankton_loss_to_DON:
1065	long_name: total microzooplankton loss to dissolved organic nitrogen
1066	model: weighted_sum
1067	parameters:
1068	n: 2
1069	coupling:
1070	term1: Z5/fZIRDn
1071	term2: Z6/fZIRDn
1072	total_microzooplankton_loss_to_DOP:
1073	long_name: total microzooplankton loss to dissolved organic phosphorus
1074	model: weighted_sum
1075	parameters:
1076	n: 2
1077	coupling:
1078	term1: Z5/fZIRDp
1079	term2: Z6/fZIRDp
1080	total_microzooplankton_respiration:
1081	long_name: total microzooplankton respiration
1082	model: weighted_sum
1083	parameters:
1084	n: 2
1085	coupling:
1086	term1: Z5/fZIO3c
1087	term2: Z6/fZIO3c
1088	total_microzooplankton_loss_to_DIN:
1089	long_name: total microzooplankton loss to dissolved inorganic nitrogen
1090	model: weighted_sum
1091	parameters:
1092	n: 2
1093	coupling:
1094	term1: Z5/fZINIn
1095	term2: Z6/fZINIn
1096	total_microzooplankton_loss_to_DIP:
1097	long_name: total microzooplankton loss to dissolved inorganic phosphorus
1098	model: weighted_sum
1099	parameters:
1100	n: 2
1101	coupling:
1102	term1: Z5/fZINIp
1103	term2: Z6/fZINIp
1104	gross_calcification_rate:
1105	long_name: gross calcification rate
1106	model: weighted_sum
1107	parameters:
1108	n: 4
1109	coupling:
1110	term1: P2/calcification
1111	term2: Z4/calcification
1112	term3: Z5/calcification
1113	term4: Z6/calcification
1114	ben_PON:
1115	long_name: benthic particulate organic nitrogen
1116	model: horizontal_weighted_sum
1117	parameters:
1118	n: 2
1119	coupling:
1120	term1: Q6/n
1121	term2: Q7/n
1122	ben_POP:
1123	long_name: benthic particulate organic phosphate
1124	model: horizontal_weighted_sum
1125	parameters:
1126	n: 2
1127	coupling:
1128	term1: Q6/p
1129	term2: Q7/p
1130	Q6_remins:
1131	long_name: benthic remineralisation of silicate
1132	model: horizontal_weighted_sum
1133	parameters:
1134	n: 1
1135	weight1: 0.007
1136	coupling:
1137	term1: Q6/s
1138	net_PelBen_POC:
1139	long_name: flux of particulate organic carbon from pelagic to benthos
1140	model: horizontal_weighted_sum
1141	parameters:
1142	n: 13
1143	weight13: -1.
1144	coupling:
1145	term1: R4/dep1c
1146	term2: R4/dep2c
1147	term3: R6/dep1c
1148	term4: R6/dep2c
1149	term5: R8/dep1c
1150	term6: R8/dep2c
1151	term7: P1/dep1c
1152	term8: P1/dep2c
1153	term9: P1/dep3c
1154	term10: P4/dep1c
1155	term11: P4/dep2c
1156	term12: P4/dep3c
1157	term13: Q6/resuspension_flux_c
1158	net_PelBen_PON:
1159	long_name: flux of particulate organic nitrogen from pelagic to benthos
1160	model: horizontal_weighted_sum
1161	parameters:
1162	n: 13
1163	weight13: -1.
1164	coupling:
1165	term1: R4/dep1n
1166	term2: R4/dep2n
1167	term3: R6/dep1n
1168	term4: R6/dep2n
1169	term5: R8/dep1n
1170	term6: R8/dep2n
1171	term7: P1/dep1n
1172	term8: P1/dep2n
1173	term9: P1/dep3n
1174	term10: P4/dep1n
1175	term11: P4/dep2n
1176	term12: P4/dep3n
1177	term13: Q6/resuspension_flux_n
1178	net_PelBen_POP:
1179	long_name: flux of particulate organic phosphorus from pelagic to benthos
1180	model: horizontal_weighted_sum
1181	parameters:
1182	n: 13
1183	weight13: -1.
1184	coupling:
1185	term1: R4/dep1p
1186	term2: R4/dep2p
1187	term3: R6/dep1p
1188	term4: R6/dep2p
1189	term5: R8/dep1p
1190	term6: R8/dep2p
1191	term7: P1/dep1p
1192	term8: P1/dep2p
1193	term9: P1/dep3p
1194	term10: P4/dep1p
1195	term11: P4/dep2p
1196	term12: P4/dep3p
1197	term13: Q6/resuspension_flux_p
1198	net_PelBen_POSi:
1199	long_name: flux of particulate organic silicate from pelagic to benthos
1200	model: horizontal_weighted_sum
1201	parameters:
1202	n: 4
1203	weight4: -1.
1204	coupling:
1205	term1: R6/dep1s
1206	term2: R8/dep1s
1207	term3: P1/dep1s
1208	term4: Q6/resuspension_flux_s

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source: NEMO/branches/UKMO/AMM15_v3_6_STABLE_new_ersem/NEMOGCM/CONFIG/ORCA2_LIM_FABM_ERSEM/EXP01/fabm.yaml

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