1 | check_conservation: false |
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2 | require_initialization: true |
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3 | instances: |
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4 | zenithAngle: |
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5 | model: ersem/zenith_angle |
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6 | light: |
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7 | model: ersem/light_iop_ady |
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8 | parameters: |
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9 | a0w: 0.03 # absorption coefficient of clear water (1/m), default = 0.036 |
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10 | b0w: 0.0015 # backscatter coefficient of clear water (1/m), default = 0.0016 |
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11 | pEIR_eow: 0.5 # photosynthetically active fraction of shortwave radiation (-), default = 0.5 |
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12 | relax: 0.143 # relaxation towards satellite gelbstoff absorption (1/d), default=0.033 |
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13 | initialization: |
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14 | ADY: 0.05 |
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15 | N1: |
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16 | long_name: phosphate |
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17 | model: ersem/pelagic_base |
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18 | parameters: |
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19 | composition: p # elemental composition |
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20 | c0: 0.001 # background carbon concentration (mg C/m^3), default = 0.0 |
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21 | initialization: |
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22 | p: 0.4 # phosphorus (mmol P/m^3) |
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23 | N3: |
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24 | long_name: nitrate |
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25 | model: ersem/pelagic_base |
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26 | parameters: |
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27 | composition: n # elemental composition |
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28 | c0: 0.001 # background carbon concentration (mg C/m^3), default = 0.0 |
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29 | initialization: |
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30 | n: 8.0 # nitrogen (mmol N/m^3) |
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31 | N4: |
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32 | long_name: ammonium |
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33 | model: ersem/pelagic_base |
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34 | parameters: |
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35 | composition: n # elemental composition |
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36 | c0: 0.001 # background carbon concentration (mg C/m^3), default = 0.0 |
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37 | initialization: |
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38 | n: 0.1 # nitrogen (mmol N/m^3) |
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39 | N5: |
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40 | long_name: silicate |
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41 | model: ersem/pelagic_base |
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42 | parameters: |
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43 | composition: s # elemental composition |
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44 | s0: 0.0003 # background silicon concentration (mmol Si/m^3), default = 0.0 |
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45 | initialization: |
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46 | s: 4.5 # silicate (mmol Si/m^3) |
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47 | O2: |
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48 | long_name: oxygen |
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49 | model: ersem/oxygen |
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50 | parameters: |
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51 | ISWO2: 2 # saturation formulation (1: legacy ERSEM, 2: Weiss 1970) |
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52 | initialization: |
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53 | o: 300.0 # oxygen (mmol O_2/m^3) |
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54 | O3: |
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55 | long_name: carbonate |
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56 | model: ersem/carbonate |
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57 | parameters: |
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58 | iswCO2: 1 # carbonate system diagnostics (0: off, 1: on), default = 1 |
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59 | iswASFLUX: 1 # air-sea CO2 exchange (0: none, 1: Nightingale and Liss, 2: Wanninkhof 1992 without chemical enhancement, 3: Wanninkhof 1992 with chemical enhancement, 4: Wanninkhof 1999), default = 1 |
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60 | iswtalk: 5 # alkalinity formulation (1-4: from salinity and temperature, 5: dynamic alkalinity), default = 5 |
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61 | #iswbioalk: 1 |
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62 | initialization: |
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63 | c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3) |
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64 | R1: |
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65 | long_name: labile dissolved organic matter |
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66 | model: ersem/pelagic_base |
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67 | parameters: |
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68 | composition: cnp # elemental composition |
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69 | c0: 0.0034 # background carbon concentration (mg C/m^3), default = 0.0 |
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70 | initialization: |
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71 | c: 10.0 # carbon (mg C/m^3) |
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72 | n: 0.14 # nitrogen (mmol N/m^3) |
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73 | p: 0.01 # phosphorus (mmol P/m^3) |
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74 | R2: |
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75 | long_name: semi-labile dissolved organic matter |
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76 | model: ersem/pelagic_base |
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77 | parameters: |
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78 | composition: c # elemental composition |
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79 | c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0 |
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80 | initialization: |
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81 | c: 12.0 # carbon (mg C/m^3) |
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82 | R3: |
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83 | long_name: semi-refractory dissolved organic matter |
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84 | model: ersem/pelagic_base |
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85 | parameters: |
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86 | composition: c # elemental composition |
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87 | c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0 |
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88 | initialization: |
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89 | c: 12.0 # carbon (mg C/m^3) |
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90 | R4: |
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91 | long_name: small-size pom |
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92 | model: ersem/pelagic_base |
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93 | parameters: |
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94 | composition: cnpf # elemental composition |
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95 | rm: 1.0 # sinking velocity (m/d), default = 0.0 |
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96 | ndeposition: 2 # number of target pools where the sedimentation flux goes (-) |
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97 | qxc2: 0.1 |
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98 | qxn2: 0.1 |
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99 | qxp2: 0.06 |
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100 | c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0 |
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101 | initialization: |
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102 | c: 7.2 # carbon (mg C/m^3) |
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103 | n: 0.1 # nitrogen (mmol N/m^3) |
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104 | p: 0.007 # phosphorus (mmol P/m^3) |
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105 | coupling: |
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106 | deposition_target1: Q6 |
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107 | deposition_target2: Q7 |
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108 | R6: |
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109 | long_name: medium-size pom |
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110 | model: ersem/pelagic_base |
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111 | parameters: |
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112 | composition: cnpsf # elemental composition |
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113 | rm: 5.0 # sinking velocity (m/d), default = 0.0 |
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114 | ndeposition: 2 # number of target pools where the sedimentation flux goes (-) |
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115 | qxc2: 0.1 |
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116 | qxn2: 0.1 |
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117 | qxp2: 0.06 |
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118 | qxs2: 0.0 |
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119 | c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0 |
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120 | initialization: |
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121 | c: 17.0 # carbon (mg C/m^3) |
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122 | n: 0.24 # nitrogen (mmol N/m^3) |
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123 | p: 0.02 # phosphorus (mmol P/m^3) |
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124 | s: 0.1 # silicate (mmol Si/m^3) |
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125 | coupling: |
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126 | deposition_target1: Q6 |
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127 | deposition_target2: Q7 |
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128 | R8: |
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129 | long_name: large-size pom |
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130 | model: ersem/pelagic_base |
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131 | parameters: |
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132 | composition: cnps # elemental composition |
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133 | rm: 10.0 # sinking velocity (m/d), default = 0.0 |
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134 | ndeposition: 2 # number of target pools where the sedimentation flux goes (-) |
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135 | qxc2: 0.1 |
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136 | qxn2: 0.1 |
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137 | qxp2: 0.06 |
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138 | qxs2: 0.0 |
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139 | c0: 0.0033 # background carbon concentration (mg C/m^3), default = 0.0 |
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140 | initialization: |
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141 | c: 0.17 # carbon (mg C/m^3) |
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142 | n: 0.0024 # nitrogen (mmol N/m^3) |
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143 | p: 0.0002 # phosphorus (mmol P/m^3) |
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144 | s: 0.001 # silicate (mmol Si/m^3) |
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145 | coupling: |
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146 | deposition_target1: Q6 |
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147 | deposition_target2: Q7 |
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148 | Q1: |
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149 | long_name: benthic dissolved organic matter |
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150 | model: ersem/benthic_base |
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151 | parameters: |
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152 | composition: cnp |
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153 | remin: 0.1 |
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154 | pN3: 0.9 |
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155 | initialization: |
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156 | c: 0.001 |
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157 | n: 1.26e-05 |
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158 | p: 7.86e-07 |
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159 | coupling: |
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160 | O3c: O3/c |
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161 | N1p: N1/p |
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162 | N3n: N3/n |
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163 | N4n: N4/n |
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164 | Q6: |
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165 | long_name: benthic particulate organic matter |
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166 | model: ersem/benthic_base |
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167 | parameters: |
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168 | composition: cnpsf |
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169 | resuspension: true |
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170 | remin: 0.05 |
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171 | pN3: 0.9 |
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172 | initialization: |
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173 | c: 0.1 |
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174 | n: 0.00126 |
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175 | p: 7.86e-05 |
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176 | s: 0.001 |
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177 | coupling: |
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178 | O3c: O3/c |
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179 | N1p: N1/p |
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180 | N3n: N3/n |
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181 | N4n: N4/n |
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182 | N5s: N5/s |
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183 | RP: R6 |
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184 | Q7: |
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185 | long_name: benthic refractory matter |
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186 | model: ersem/benthic_base |
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187 | parameters: |
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188 | composition: cnp |
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189 | remin: 0.01 |
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190 | pN3: 0.9 |
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191 | initialization: |
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192 | c: 1.0e-01 |
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193 | n: 0.00126 |
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194 | p: 7.86e-05 |
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195 | coupling: |
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196 | O3c: O3/c |
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197 | N1p: N1/p |
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198 | N3n: N3/n |
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199 | N4n: N4/n |
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200 | B1: |
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201 | long_name: bacteria |
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202 | model: ersem/bacteria_docdyn |
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203 | parameters: |
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204 | iswBlim: 2 # nutrient limitation (1: minimum of inorganic and organic availability, 2: additive availability) |
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205 | q10: 2.0 # Q_10 temperature coefficient (-) |
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206 | chdo: 0.31 # Michaelis-Menten constant for oxygen limitation (-) |
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207 | chn: 0.5 # Michaelis-Menten constant for nitrate limitation (mmol N/m^3) |
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208 | chp: 0.1 # Michaelis-Menten constant for phosphate limitation (mmol P/m^3) |
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209 | sd: 0.05 # specific mortality at reference temperature (1/d) |
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210 | sum: 2.2 # maximum specific uptake at reference temperature (1/d) |
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211 | pu: 0.6 # efficiency at high oxygen levels (-) |
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212 | puo: 0.2 # efficiency at low oxygen levels (-) |
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213 | srs: 0.1 # specific rest respiration at reference temperature (1/d) |
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214 | sR1: 1.0 # maximum turn-over rate of DOM (1/d), default = 1.0 |
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215 | qpc: 0.0019 # maximum phosphorus to carbon ratio (mmol P/mg C) |
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216 | qnc: 0.0167 # maximum nitrogen to carbon ratio (mmol N/mg C) |
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217 | ur_O2: 0.1 # oxygen consumed per carbon respired (mmol O_2/mg C) |
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218 | sR1N1: 0.0 # mineralisation rate of labile dissolved organic phosphorus (1/d) |
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219 | sR1N4: 0.0 # mineralisation rate of labile dissolved organic nitrogen (1/d) |
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220 | fsink: 7e-05 # scavenging rate for iron (1/d) |
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221 | c0: 0.01 # background carbon concentration (mg C/m^3) |
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222 | nRP: 3 # number of substrates, default = 0 |
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223 | sRP1R1: 0.01 # remineralisation of substrate 1 to DOM (1/d) |
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224 | sRP2R1: 0.0025 # remineralisation of substrate 2 to DOM (1/d) |
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225 | sRP3R1: 0.001 # remineralisation of substrate 3 to DOM (1/d) |
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226 | rR2: 0.0075 # fraction of semi-labile DOC available to bacteria (-) |
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227 | rR3: 0.0025 # fraction of semi-refractory DOC available to bacteria (-) |
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228 | frR3: 0.3 # fraction of activity respiration converted to semi-refractory DOC (-) |
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229 | initialization: |
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230 | c: 15.7 # carbon (mg C/m^3) |
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231 | n: 0.26 # nitrogen (mmol N/m^3) |
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232 | p: 0.029 # phosphorus (mmol P/m^3) |
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233 | coupling: |
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234 | RP1: R4 |
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235 | RP2: R6 |
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236 | RP3: R8 |
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237 | N1p: N1/p # phosphate (mmol P/m^3) |
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238 | N4n: N4/n # ammonium (mmol N/m^3) |
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239 | R1c: R1/c # labile dissolved organic carbon (mg C/m^3) |
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240 | R1p: R1/p # labile dissolved organic phosphorus (mmol P/m^3) |
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241 | R1n: R1/n # labile dissolved organic nitrogen (mmol N/m^3) |
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242 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
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243 | R3c: R3/c # semi-refractory DOC (mg C/m^3) |
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244 | O3c: O3/c # carbon dioxide (mmol C/m^3) |
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245 | O2o: O2/o # oxygen (mmol O_2/m^3) |
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246 | pel_nit: |
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247 | long_name: pelagic nitrification |
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248 | model: ersem/nitrification |
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249 | parameters: |
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250 | q10: 2.0 # Q_10 temperature coefficient (-) |
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251 | ISWph: 1 # pH impact on nitrification (0: off, 1: on) |
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252 | sN4N3: 0.5 # specific nitrification rate (1/d) |
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253 | chN3o: 2700.0 # Michaelis-Menten constant for cubic oxygen dependence of nitrification ((mmol O_2/m^3)^3) |
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254 | chN4n: 0.5 # Michaelis-Menten constant for cubic ammonium dependence of nitrification ((mmol N/m^3)^3), default = 0.0 |
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255 | coupling: |
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256 | N3n: N3/n # nitrate (mmol N/m^3) |
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257 | N4n: N4/n # ammonium (mmol N/m^3) |
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258 | O2o: O2/o # oxygen (mmol O_2/m^3) |
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259 | P1: |
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260 | long_name: diatoms |
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261 | model: ersem/primary_producer |
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262 | parameters: |
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263 | sum: 1.375 # maximum specific productivity at reference temperature (1/d) |
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264 | q10: 2.0 # Q_10 temperature coefficient (-) |
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265 | srs: 0.04 # specific rest respiration at reference temperature (1/d) |
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266 | pu_ea: 0.2 # excreted fraction of primary production (-) |
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267 | pu_ra: 0.2 # respired fraction of primary production (-) |
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268 | qnlc: 0.0042 # minimum nitrogen to carbon ratio (mmol N/mg C) |
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269 | qplc: 0.0001 # minimum phosphorus to carbon ratio (mmol P/mg C) |
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270 | xqcp: 1.0 # threshold for phosphorus limitation (relative to Redfield ratio) (-) |
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271 | xqcn: 1.0 # threshold for nitrogen limitation (relative to Redfield ratio) (-) |
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272 | xqp: 2.0 # maximum phosphorus to carbon ratio (relative to Redfield ratio) (-) |
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273 | xqn: 1.075 # maximum nitrogen to carbon ratio (relative to Redfield ratio) (-) |
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274 | qun3: 0.0025 # nitrate affinity (m^3/mg C/d) |
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275 | qun4: 0.0025 # ammonium affinity (m^3/mg C/d) |
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276 | qurp: 0.003 # phosphate affinity (m^3/mg C/d) |
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277 | snplux: 1.0 # specific tendency of luxury uptake of nutrients towards maximum quota (1/d), default = 1.0 |
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278 | use_Si: true # use silicate, default = false |
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279 | qsc: 0.0118 # maximum silicate to carbon ratio (mmol Si/mg C) |
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280 | chs: 0.2 # Michaelis-Menten constant for silicate limitation (mmol/m^3) |
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281 | sdo: 0.05 # 1.1 of minimal specific lysis rate (1/d) |
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282 | alpha: 4.0 # initial slope of PI-curve (mg C m^2/mg Chl/W/d) |
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283 | beta: 0.07 # photoinhibition parameter (mg C m^2/mg Chl/W/d) |
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284 | phim: 0.06 # maximum effective chlorophyll to carbon photosynthesis ratio (mg Chl/mg C) |
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285 | Limnut: 1 # nitrogen-phosphorus colimitation formulation (0: geometric mean, 1: minimum, 2: harmonic mean) |
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286 | docdyn: true # use dynamic ratio of labile to semi-labile DOM production, default = false |
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287 | uB1c_O2: 0.11 # oxygen produced per unit of carbon fixed (mmol O_2/mg C) |
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288 | urB1_O2: 0.1 # oxygen consumed per unit of carbon respired (mmol O_2/mg C) |
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289 | iopABS: 0.007 # specific shortwave absorption (m^2/mg Chl), default = 0.008 |
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290 | iopBBS: 0.00048 # specific shortwave backscatter (m^2/mg Chl), default = 0.003 |
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291 | c0: 0.0001 # background carbon concentration (mg C/m^3), default = 0.0 |
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292 | resm: 5.0 # maximum nutrient-limitation-induced sinking velocity (m/d), default = 0.0 |
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293 | esni: 0.7 # level of nutrient limitation below which sinking commences (-) |
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294 | cenh: false # enable atmospheric CO2 influence on photosynthesis, default = false |
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295 | ndeposition: 3 # number of target pools for sedimentation, default = 1 |
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296 | qxc2: 0.2 # fraction of carbon sinking into deposition target 2 (-) |
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297 | qxc3: 0.005 # fraction of carbon sinking into deposition target 3 (-) |
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298 | qxn2: 0.2 # fraction of nitrogen sinking into deposition target 2 (-) |
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299 | qxn3: 0.005 # fraction of nitrogen sinking into deposition target 3 (-) |
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300 | qxp2: 0.24 # fraction of phosphorus sinking into deposition target 2 (-) |
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301 | qxp3: 0.003 # fraction of phosphorus sinking into deposition target 3 (-) |
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302 | qxs2: 0.0 # fraction of silicate sinking into deposition target 2 (-) |
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303 | qxs3: 0.0 # fraction of silicate sinking into deposition target 3 (-) |
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304 | initialization: |
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305 | c: 8.0 # carbon (mg C/m^3) |
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306 | n: 0.1114 # nitrogen (mmol N/m^3) |
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307 | p: 0.009 # phosphorus (mmol P/m^3) |
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308 | s: 0.128 # silicate (mmol Si/m^3) |
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309 | Chl: 0.4 # chlorophyll a (mg/m^3) |
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310 | coupling: |
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311 | RP: R6 |
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312 | deposition_target1: Q6 |
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313 | deposition_target2: Q1 |
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314 | deposition_target3: Q7 |
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315 | N1p: N1/p # phosphate (mmol P/m^3) |
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316 | N3n: N3/n # nitrate (mmol N/m^3) |
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317 | N4n: N4/n # ammonium (mmol N/m^3) |
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318 | N5s: N5/s # silicate (mmol Si/m^3) |
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319 | R1c: R1/c # dissolved organic carbon (mg C/m^3) |
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320 | R1p: R1/p # dissolved organic phosphorus (mmol P/m^3) |
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321 | R1n: R1/n # dissolved organic nitrogen (mmol N/m^3) |
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322 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
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323 | O2o: O2/o # oxygen (mmol O_2/m^3) |
---|
324 | O3c: O3/c # carbon dioxide (mmol C/m^3) |
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325 | P2: |
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326 | long_name: nanophytoplankton |
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327 | model: ersem/primary_producer |
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328 | parameters: |
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329 | sum: 1.625 # maximum specific productivity at reference temperature (1/d) |
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330 | q10: 2.0 # Q_10 temperature coefficient (-) |
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331 | srs: 0.04 # specific rest respiration at reference temperature (1/d) |
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332 | pu_ea: 0.2 # excreted fraction of primary production (-) |
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333 | pu_ra: 0.2 # respired fraction of primary production (-) |
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334 | qnlc: 0.005 # minimum nitrogen to carbon ratio (mmol N/mg C) |
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335 | qplc: 0.000225 # minimum phosphorus to carbon ratio (mmol P/mg C) |
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336 | xqcp: 1.0 # threshold for phosphorus limitation (relative to Redfield ratio) (-) |
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337 | xqcn: 1.0 # threshold for nitrogen limitation (relative to Redfield ratio) (-) |
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338 | xqp: 2.0 # maximum phosphorus to carbon ratio (relative to Redfield ratio) (-) |
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339 | xqn: 1.075 # maximum nitrogen to carbon ratio (relative to Redfield ratio) (-) |
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340 | qun3: 0.004 # nitrate affinity (m^3/mg C/d) |
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341 | qun4: 0.004 # ammonium affinity (m^3/mg C/d) |
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342 | qurp: 0.004 # phosphate affinity (m^3/mg C/d) |
---|
343 | snplux: 1.0 # specific tendency of luxury uptake of nutrients towards maximum quota (1/d), default = 1.0 |
---|
344 | use_Si: false # use silicate, default = false |
---|
345 | sdo: 0.05 # 1.1 of minimal specific lysis rate (1/d) |
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346 | alpha: 5.0 # initial slope of PI-curve (mg C m^2/mg Chl/W/d) |
---|
347 | beta: 0.1 # photoinhibition parameter (mg C m^2/mg Chl/W/d) |
---|
348 | phim: 0.025 # maximum effective chlorophyll to carbon photosynthesis ratio (mg Chl/mg C) |
---|
349 | Limnut: 1 # nitrogen-phosphorus colimitation formulation (0: geometric mean, 1: minimum, 2: harmonic mean) |
---|
350 | docdyn: true # use dynamic ratio of labile to semi-labile DOM production, default = false |
---|
351 | uB1c_O2: 0.11 # oxygen produced per unit of carbon fixed (mmol O_2/mg C) |
---|
352 | urB1_O2: 0.1 # oxygen consumed per unit of carbon respired (mmol O_2/mg C) |
---|
353 | iopABS: 0.0041 # specific shortwave absorption (m^2/mg Chl), default = 0.008 |
---|
354 | iopBBS: 0.003 # specific shortwave backscatter (m^2/mg Chl), default = 0.003 |
---|
355 | c0: 0.001 # background carbon concentration (mg C/m^3), default = 0.0 |
---|
356 | calcify: true # calcify, default = false |
---|
357 | resm: 0.0 # maximum nutrient-limitation-induced sinking velocity (m/d), default = 0.0 |
---|
358 | esni: 0.7 # level of nutrient limitation below which sinking commences (-) |
---|
359 | cenh: false # enable atmospheric CO2 influence on photosynthesis, default = false |
---|
360 | ndeposition: 3 # number of target pools for sedimentation, default = 1 |
---|
361 | qxc2: 0.5 # fraction of carbon sinking into deposition target 2 (-) |
---|
362 | qxc3: 0.05 # fraction of carbon sinking into deposition target 3 (-) |
---|
363 | qxn2: 0.5 # fraction of nitrogen sinking into deposition target 2 (-) |
---|
364 | qxn3: 0.05 # fraction of nitrogen sinking into deposition target 3 (-) |
---|
365 | qxp2: 0.6 # fraction of phosphorus sinking into deposition target 2 (-) |
---|
366 | qxp3: 0.03 # fraction of phosphorus sinking into deposition target 3 (-) |
---|
367 | initialization: |
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368 | c: 5.9 # carbon (mg C/m^3) |
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369 | n: 0.0926 # nitrogen (mmol N/m^3) |
---|
370 | p: 0.0036 # phosphorus (mmol P/m^3) |
---|
371 | Chl: 0.3 # chlorophyll a (mg/m^3) |
---|
372 | coupling: |
---|
373 | RP: R4 |
---|
374 | deposition_target1: Q6 |
---|
375 | deposition_target2: Q1 |
---|
376 | deposition_target3: Q7 |
---|
377 | N1p: N1/p # phosphate (mmol P/m^3) |
---|
378 | N3n: N3/n # nitrate (mmol N/m^3) |
---|
379 | N4n: N4/n # ammonium (mmol N/m^3) |
---|
380 | R1c: R1/c # dissolved organic carbon (mg C/m^3) |
---|
381 | R1p: R1/p # dissolved organic phosphorus (mmol P/m^3) |
---|
382 | R1n: R1/n # dissolved organic nitrogen (mmol N/m^3) |
---|
383 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
---|
384 | O2o: O2/o # oxygen (mmol O_2/m^3) |
---|
385 | O3c: O3/c # carbon dioxide (mmol C/m^3) |
---|
386 | RainR: L2/RainR # rain ratio (PIC : POC) (-) |
---|
387 | L2c: L2/c # free calcite (mg C/m^3) |
---|
388 | P3: |
---|
389 | long_name: picophytoplankton |
---|
390 | model: ersem/primary_producer |
---|
391 | parameters: |
---|
392 | sum: 2.0 # maximum specific productivity at reference temperature (1/d) |
---|
393 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
394 | srs: 0.045 # specific rest respiration at reference temperature (1/d) |
---|
395 | pu_ea: 0.2 # excreted fraction of primary production (-) |
---|
396 | pu_ra: 0.2 # respired fraction of primary production (-) |
---|
397 | qnlc: 0.006 # minimum nitrogen to carbon ratio (mmol N/mg C) |
---|
398 | qplc: 0.00035 # minimum phosphorus to carbon ratio (mmol P/mg C) |
---|
399 | xqcp: 1.0 # threshold for phosphorus limitation (relative to Redfield ratio) (-) |
---|
400 | xqcn: 1.0 # threshold for nitrogen limitation (relative to Redfield ratio) (-) |
---|
401 | xqp: 1.5 # maximum phosphorus to carbon ratio (relative to Redfield ratio) (-) |
---|
402 | xqn: 1.05 # maximum nitrogen to carbon ratio (relative to Redfield ratio) (-) |
---|
403 | qun3: 0.006 # nitrate affinity (m^3/mg C/d) |
---|
404 | qun4: 0.007 # ammonium affinity (m^3/mg C/d) |
---|
405 | qurp: 0.006 # phosphate affinity (m^3/mg C/d) |
---|
406 | snplux: 1.0 # specific tendency of luxuary uptake of nutrients towards maximum quoata (1/d) |
---|
407 | use_Si: false # use silicate, default = false |
---|
408 | sdo: 0.055 # 1.1 of minimal specific lysis rate (1/d) |
---|
409 | alpha: 6.0 # initial slope of PI-curve (mg C m^2/mg Chl/W/d) |
---|
410 | beta: 0.12 # photoinhibition parameter (mg C m^2/mg Chl/W/d) |
---|
411 | phim: 0.015 # maximum effective chlorophyll to carbon photosynthesis ratio (mg Chl/mg C) |
---|
412 | Limnut: 1 # nitrogen-phosphorus colimitation formulation (0: geometric mean, 1: minimum, 2: harmonic mean) |
---|
413 | docdyn: true # use dynamic ratio of labile to semi-labile DOM production, default = false |
---|
414 | uB1c_O2: 0.11 # oxygen produced per unit of carbon fixed (mmol O_2/mg C) |
---|
415 | urB1_O2: 0.1 # oxygen consumed per unit of carbon respired (mmol O_2/mg C) |
---|
416 | iopABS: 0.023 # specific shortwave absorption (m^2/mg Chl), default = 0.008 |
---|
417 | iopBBS: 0.003 # specific shortwave backscatter (m^2/mg Chl), default = 0.003 |
---|
418 | c0: 0.0088 # background carbon concentration (mg C/m^3), default = 0.0 |
---|
419 | resm: 0.0 # maximum nutrient-limitation-induced sinking velocity (m/d), default = 0.0 |
---|
420 | esni: 0.7 # level of nutrient limitation below which sinking commences (-) |
---|
421 | cenh: false # enable atmospheric CO2 influence on photosynthesis, default = false |
---|
422 | ndeposition: 3 # number of target pools for sedimentation, default = 1 |
---|
423 | qxc2: 0.5 # fraction of carbon sinking into deposition target 2 (-) |
---|
424 | qxc3: 0.05 # fraction of carbon sinking into deposition target 3 (-) |
---|
425 | qxn2: 0.5 # fraction of nitrogen sinking into deposition target 2 (-) |
---|
426 | qxn3: 0.05 # fraction of nitrogen sinking into deposition target 3 (-) |
---|
427 | qxp2: 0.6 # fraction of phosphorus sinking into deposition target 2 (-) |
---|
428 | qxp3: 0.03 # fraction of phosphorus sinking into deposition target 3 (-) |
---|
429 | initialization: |
---|
430 | c: 5.9 # carbon (mg C/m^3) |
---|
431 | n: 0.0926 # nitrogen (mmol N/m^3) |
---|
432 | p: 0.0036 # phosphorus (mmol P/m^3) |
---|
433 | Chl: 0.3 # chlorophyll a (mg/m^3) |
---|
434 | coupling: |
---|
435 | RP: R4 |
---|
436 | deposition_target1: Q6 |
---|
437 | deposition_target2: Q1 |
---|
438 | deposition_target3: Q7 |
---|
439 | N1p: N1/p # phosphate (mmol P/m^3) |
---|
440 | N3n: N3/n # nitrate (mmol N/m^3) |
---|
441 | N4n: N4/n # ammonium (mmol N/m^3) |
---|
442 | R1c: R1/c # dissolved organic carbon (mg C/m^3) |
---|
443 | R1p: R1/p # dissolved organic phosphorus (mmol P/m^3) |
---|
444 | R1n: R1/n # dissolved organic nitrogen (mmol N/m^3) |
---|
445 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
---|
446 | O2o: O2/o # oxygen (mmol O_2/m^3) |
---|
447 | O3c: O3/c # carbon dioxide (mmol C/m^3) |
---|
448 | P4: |
---|
449 | long_name: microphytoplankton |
---|
450 | model: ersem/primary_producer |
---|
451 | parameters: |
---|
452 | sum: 1.125 # maximum specific productivity at reference temperature (1/d) |
---|
453 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
454 | srs: 0.035 # specific rest respiration at reference temperature (1/d) |
---|
455 | pu_ea: 0.2 # excreted fraction of primary production (-) |
---|
456 | pu_ra: 0.2 # respired fraction of primary production (-) |
---|
457 | qnlc: 0.0042 # minimum nitrogen to carbon ratio (mmol N/mg C) |
---|
458 | qplc: 0.0001 # minimum phosphorus to carbon ratio (mmol P/mg C) |
---|
459 | xqcp: 1.0 # threshold for phosphorus limitation (relative to Redfield ratio) (-) |
---|
460 | xqcn: 1.0 # threshold for nitrogen limitation (relative to Redfield ratio) (-) |
---|
461 | xqp: 2.7 # maximum phosphorus to carbon ratio (relative to Redfield ratio) (-) |
---|
462 | xqn: 1.1 # maximum nitrogen to carbon ratio (relative to Redfield ratio) (-) |
---|
463 | qun3: 0.002 # nitrate affinity (m^3/mg C/d) |
---|
464 | qun4: 0.002 # ammonium affinity (m^3/mg C/d) |
---|
465 | qurp: 0.002 # phosphate affinity (m^3/mg C/d) |
---|
466 | snplux: 1.0 # specific tendency of luxuary uptake of nutrients towards maximum quoata (1/d) |
---|
467 | use_Si: false # use silicate, default = false |
---|
468 | sdo: 0.045 # 1.1 of minimal specific lysis rate (1/d) |
---|
469 | alpha: 3.0 # initial slope of PI-curve (mg C m^2/mg Chl/W/d) |
---|
470 | beta: 0.06 # photoinhibition parameter (mg C m^2/mg Chl/W/d) |
---|
471 | phim: 0.045 # maximum effective chlorophyll to carbon photosynthesis ratio (mg Chl/mg C) |
---|
472 | Limnut: 1 # nitrogen-phosphorus colimitation formulation (0: geometric mean, 1: minimum, 2: harmonic mean) |
---|
473 | docdyn: true # use dynamic ratio of labile to semi-labile DOM production, default = false |
---|
474 | uB1c_O2: 0.11 # oxygen produced per unit of carbon fixed (mmol O_2/mg C) |
---|
475 | urB1_O2: 0.1 # oxygen consumed per unit of carbon respired (mmol O_2/mg C) |
---|
476 | iopABS: 0.008 # specific shortwave absorption (m^2/mg Chl), default = 0.008 |
---|
477 | iopBBS: 0.00048 # specific shortwave backscatter (m^2/mg Chl), default = 0.003 |
---|
478 | c0: 0.0001 # background carbon concentration (mg C/m^3), default = 0.0 |
---|
479 | resm: 5.0 # maximum nutrient-limitation-induced sinking velocity (m/d), default = 0.0 |
---|
480 | esni: 0.7 # level of nutrient limitation below which sinking commences (-) |
---|
481 | cenh: false # enable atmospheric CO2 influence on photosynthesis, default = false |
---|
482 | ndeposition: 3 # number of target pools for sedimentation, default = 1 |
---|
483 | qxc2: 0.5 # fraction of carbon sinking into deposition target 2 (-) |
---|
484 | qxc3: 0.05 # fraction of carbon sinking into deposition target 3 (-) |
---|
485 | qxn2: 0.5 # fraction of nitrogen sinking into deposition target 2 (-) |
---|
486 | qxn3: 0.05 # fraction of nitrogen sinking into deposition target 3 (-) |
---|
487 | qxp2: 0.6 # fraction of phosphorus sinking into deposition target 2 (-) |
---|
488 | qxp3: 0.03 # fraction of phosphorus sinking into deposition target 3 (-) |
---|
489 | initialization: |
---|
490 | c: 5.9 # carbon (mg C/m^3) |
---|
491 | n: 0.0926 # nitrogen (mmol N/m^3) |
---|
492 | p: 0.0036 # phosphorus (mmol P/m^3) |
---|
493 | Chl: 0.3 # chlorophyll a (mg/m^3) |
---|
494 | coupling: |
---|
495 | RP: R6 |
---|
496 | deposition_target1: Q6 |
---|
497 | deposition_target2: Q1 |
---|
498 | deposition_target3: Q7 |
---|
499 | N1p: N1/p # phosphate (mmol P/m^3) |
---|
500 | N3n: N3/n # nitrate (mmol N/m^3) |
---|
501 | N4n: N4/n # ammonium (mmol N/m^3) |
---|
502 | R1c: R1/c # dissolved organic carbon (mg C/m^3) |
---|
503 | R1p: R1/p # dissolved organic phosphorus (mmol P/m^3) |
---|
504 | R1n: R1/n # dissolved organic nitrogen (mmol N/m^3) |
---|
505 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
---|
506 | O2o: O2/o # oxygen (mmol O_2/m^3) |
---|
507 | O3c: O3/c # carbon dioxide (mmol C/m^3) |
---|
508 | Z4: |
---|
509 | long_name: mesozooplankton |
---|
510 | model: ersem/mesozooplankton |
---|
511 | parameters: |
---|
512 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
513 | minfood: 12.0 # Michaelis-Menten constant to perceive food (mg C/m^3) |
---|
514 | chuc: 36.0 # Michaelis-Menten constant for food uptake (mg C/m^3) |
---|
515 | sum: 1.0 # maximum specific uptake at reference temperature (1/d) |
---|
516 | pu: 0.6 # assimilation efficiency (-) |
---|
517 | pu_ea: 0.5 # fraction of unassimilated prey that is excreted (not respired) (-) |
---|
518 | pu_eaR: 0.9 # fraction of unassimilated detritus that is excreted (not respired) (-) |
---|
519 | pe_R1: 0.5 # dissolved fraction of excreted/dying matter (-) |
---|
520 | srs: 0.015 # specific rest respiration at reference temperature (1/d) |
---|
521 | sd: 0.05 # basal mortality (1/d) |
---|
522 | sdo: 0.2 # maximum mortality due to oxygen limitation (1/d) |
---|
523 | chro: 7.81 # Michaelis-Menten constant for oxygen limitation (-) |
---|
524 | qpc: 0.000786 # phosphorus to carbon ratio (mmol P/mg C) |
---|
525 | qnc: 0.0126 # nitrogen to carbon ratio (mmol N/mg C) |
---|
526 | Minprey: 300.0 # food threshold for overwintering state (mg C/m^2) |
---|
527 | repw: 0.0025 # specific overwintering respiration (1/d) |
---|
528 | mort: 0.0025 # specific overwintering mortality (1/d) |
---|
529 | R1R2: 1.0 # labile fraction of produced dissolved organic carbon (-) |
---|
530 | xR1p: 1.2 # transfer of phosphorus to DOM, relative to POM (-), default = 0.0 |
---|
531 | xR1n: 1.0 # transfer of nitrogen to DOM, relative to POM (-), default = 0.0 |
---|
532 | urB1_O2: 0.1 # oxygen consumed per carbon respired (mmol O_2/mg C) |
---|
533 | gutdiss: 0.5 # fraction of prey calcite that dissolves after ingestion (-) |
---|
534 | c0: 0.0033 # background concentration (mg C/m^3) |
---|
535 | nprey: 9 # number of prey types, default = 0 |
---|
536 | suprey1: 0.15 # relative affinity for prey type 1 (-) |
---|
537 | suprey2: 0.05 # relative affinity for prey type 2 (-) |
---|
538 | suprey3: 0.0 # relative affinity for prey type 3 (-) |
---|
539 | suprey4: 0.15 # relative affinity for prey type 4 (-) |
---|
540 | suprey5: 0.25 # relative affinity for prey type 5 (-) |
---|
541 | suprey6: 0.25 # relative affinity for prey type 6 (-) |
---|
542 | suprey7: 0.05 # relative affinity for prey type 7 (-) |
---|
543 | suprey8: 0.0 # relative affinity for prey type 8 (-) |
---|
544 | suprey9: 0.1 # relative affinity for prey type 9 (-) |
---|
545 | prey9ispom: true # prey type 9 is detritus, default = false |
---|
546 | initialization: |
---|
547 | c: 1.2 # carbon (mg C/m^3) |
---|
548 | coupling: |
---|
549 | prey1: P1 |
---|
550 | prey2: P2 |
---|
551 | prey3: P3 |
---|
552 | prey4: P4 |
---|
553 | prey5: Z4 |
---|
554 | prey6: Z5 |
---|
555 | prey7: Z6 |
---|
556 | prey8: B1 |
---|
557 | prey9: R6 |
---|
558 | RP: R8 |
---|
559 | N1p: N1/p # phosphate (mmol P/m^3) |
---|
560 | N4n: N4/n # ammonium (mmol N/m^3) |
---|
561 | R1c: R1/c # dissolved organic carbon (mg C/m^3) |
---|
562 | R1p: R1/p # dissolved organic phosphorus (mmol P/m^3) |
---|
563 | R1n: R1/n # dissolved organic nitrogen (mmol N/m^3) |
---|
564 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
---|
565 | O2o: O2/o # oxygen source (mmol O_2/m^3) |
---|
566 | O3c: O3/c # carbon dioxide sink (mmol C/m^3) |
---|
567 | L2c: L2/c # calcite (mg C/m^3) |
---|
568 | Z5: |
---|
569 | long_name: microzooplankton |
---|
570 | model: ersem/microzooplankton |
---|
571 | parameters: |
---|
572 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
573 | minfood: 12.0 # Michaelis-Menten constant to perceive food (mg C/m^3) |
---|
574 | chuc: 32.0 # Michaelis-Menten constant for food uptake (mg C/m^3) |
---|
575 | sum: 1.25 # maximum specific uptake at reference temperature (1/d) |
---|
576 | pu: 0.5 # assimilation efficiency (-) |
---|
577 | pu_ea: 0.5 # fraction of unassimilated prey that is excreted (not respired) (-) |
---|
578 | pe_R1: 0.5 # dissolved fraction of excreted/dying matter (-) |
---|
579 | srs: 0.02 # specific rest respiration at reference temperature (1/d) |
---|
580 | sd: 0.05 # basal mortality (1/d) |
---|
581 | sdo: 0.25 # maximum mortality due to oxygen limitation (1/d) |
---|
582 | chro: 7.81 # Michaelis-Menten constant for oxygen limitation (-) |
---|
583 | qpc: 0.001 # maximum phosphorus to carbon ratio (mmol P/mg C) |
---|
584 | qnc: 0.0167 # maximum nitrogen to carbon ratio (mmol N/mg C) |
---|
585 | stempp: 0.5 # specific excretion rate of excess phosphorus (1/d) |
---|
586 | stempn: 0.5 # specific excretion rate of excess nitrogen (1/d) |
---|
587 | R1R2: 1.0 # labile fraction of produced dissolved organic carbon (-) |
---|
588 | xR1p: 1.2 # transfer of phosphorus to DOM, relative to POM (-), default = 1.0 |
---|
589 | xR1n: 1.0 # transfer of nitrogen to DOM, relative to POM (-), default = 1.0 |
---|
590 | urB1_O2: 0.1 # oxygen consumed per carbon respired (mmol O_2/mg C) |
---|
591 | gutdiss: 0.5 # fraction of prey calcite that dissolves after ingestion (-) |
---|
592 | c0: 0.0033 # background concentration (mg C/m^3) |
---|
593 | nprey: 7 # number of prey types, default = 0 |
---|
594 | suprey1: 0.1 # relative affinity for prey type 1 (-) |
---|
595 | suprey2: 0.15 # relative affinity for prey type 2 (-) |
---|
596 | suprey3: 0.15 # relative affinity for prey type 3 (-) |
---|
597 | suprey4: 0.15 # relative affinity for prey type 4 (-) |
---|
598 | suprey5: 0.1 # relative affinity for prey type 5 (-) |
---|
599 | suprey6: 0.15 # relative affinity for prey type 6 (-) |
---|
600 | suprey7: 0.2 # relative affinity for prey type 7 (-) |
---|
601 | initialization: |
---|
602 | c: 7.2 # carbon (mg C/m^3) |
---|
603 | n: 0.12 # nitrogen (mmol N/m^3) |
---|
604 | p: 0.0113 # phosphorus (mmol P/m^3) |
---|
605 | coupling: |
---|
606 | prey1: B1 |
---|
607 | prey2: P1 |
---|
608 | prey3: P2 |
---|
609 | prey4: P3 |
---|
610 | prey5: P4 |
---|
611 | prey6: Z5 |
---|
612 | prey7: Z6 |
---|
613 | RP: R6 |
---|
614 | N1p: N1/p # phosphate (mmol P/m^3) |
---|
615 | N4n: N4/n # ammonium (mmol N/m^3) |
---|
616 | R1c: R1/c # dissolved organic carbon (mg C/m^3) |
---|
617 | R1p: R1/p # dissolved organic phosphorus (mmol P/m^3) |
---|
618 | R1n: R1/n # dissolved organic nitrogen (mmol N/m^3) |
---|
619 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
---|
620 | O2o: O2/o # oxygen source (mmol O_2/m^3) |
---|
621 | O3c: O3/c # carbon dioxide sink (mmol C/m^3) |
---|
622 | L2c: L2/c # calcite (mg C/m^3) |
---|
623 | Z6: |
---|
624 | long_name: nanoflagellates |
---|
625 | model: ersem/microzooplankton |
---|
626 | parameters: |
---|
627 | q10: 2.0 # Q_10 temperature coefficient (-) |
---|
628 | minfood: 12.0 # Michaelis-Menten constant to perceive food (mg C/m^3) |
---|
629 | chuc: 28.0 # Michaelis-Menten constant for food uptake (mg C/m^3) |
---|
630 | sum: 1.5 # maximum specific uptake at reference temperature (1/d) |
---|
631 | pu: 0.4 # assimilation efficiency (-) |
---|
632 | pu_ea: 0.5 # fraction of unassimilated prey that is excreted (not respired) (-) |
---|
633 | pe_R1: 0.5 # dissolved fraction of excreted/dying matter (-) |
---|
634 | srs: 0.025 # specific rest respiration at reference temperature (1/d) |
---|
635 | sd: 0.05 # basal mortality (1/d) |
---|
636 | sdo: 0.3 # maximum mortality due to oxygen limitation (1/d) |
---|
637 | chro: 7.81 # Michaelis-Menten constant for oxygen limitation (-) |
---|
638 | qpc: 0.001 # maximum phosphorus to carbon ratio (mmol P/mg C) |
---|
639 | qnc: 0.0167 # maximum nitrogen to carbon ratio (mmol N/mg C) |
---|
640 | stempp: 0.5 # specific excretion rate of excess phosphorus (1/d) |
---|
641 | stempn: 0.5 # specific excretion rate of excess nitrogen (1/d) |
---|
642 | R1R2: 1.0 # labile fraction of produced dissolved organic carbon (-) |
---|
643 | xR1p: 1.2 # transfer of phosphorus to DOM, relative to POM (-), default = 1.0 |
---|
644 | xR1n: 1.0 # transfer of nitrogen to DOM, relative to POM (-), default = 1.0 |
---|
645 | urB1_O2: 0.1 # oxygen consumed per carbon respired (mmol O_2/mg C) |
---|
646 | gutdiss: 0.5 # fraction of prey calcite that dissolves after ingestion (-) |
---|
647 | c0: 0.0033 # background concentration (mg C/m^3) |
---|
648 | nprey: 4 # number of prey types, default = 0 |
---|
649 | suprey1: 0.45 # relative affinity for prey type 1 (-) |
---|
650 | suprey2: 0.15 # relative affinity for prey type 2 (-) |
---|
651 | suprey3: 0.25 # relative affinity for prey type 3 (-) |
---|
652 | suprey4: 0.15 # relative affinity for prey type 4 (-) |
---|
653 | initialization: |
---|
654 | c: 2.421 # carbon (mg C/m^3) |
---|
655 | n: 0.0505 # nitrogen (mmol N/m^3) |
---|
656 | p: 0.047 # phosphorus (mmol P/m^3) |
---|
657 | coupling: |
---|
658 | prey1: B1 |
---|
659 | prey2: P2 |
---|
660 | prey3: P3 |
---|
661 | prey4: Z6 |
---|
662 | RP: R4 |
---|
663 | N1p: N1/p # phosphate (mmol P/m^3) |
---|
664 | N4n: N4/n # ammonium (mmol N/m^3) |
---|
665 | R1c: R1/c # dissolved organic carbon (mg C/m^3) |
---|
666 | R1p: R1/p # dissolved organic phosphorus (mmol P/m^3) |
---|
667 | R1n: R1/n # dissolved organic nitrogen (mmol N/m^3) |
---|
668 | R2c: R2/c # semi-labile dissolved organic carbon (mg C/m^3) |
---|
669 | RPs: R6/s # particulate organic silicate (mmol Si/m^3) |
---|
670 | O2o: O2/o # oxygen source (mmol O_2/m^3) |
---|
671 | O3c: O3/c # carbon dioxide sink (mmol C/m^3) |
---|
672 | L2c: L2/c # calcite (mg C/m^3) |
---|
673 | L2: |
---|
674 | long_name: calcite |
---|
675 | model: ersem/calcification |
---|
676 | parameters: |
---|
677 | iswcal: 1 # calcification/dissolution dependence on calcite saturation (1: power law, 2: hyperbolic) |
---|
678 | ncalc: 0.81 # power of the calcification law (Ridgwell et al. 2007, mineral calcite) (-) |
---|
679 | ndiss: 2.22 # power of the dissolution law (Keir 1980) (-) |
---|
680 | Rain0: 0.6 # maximum rain ratio from PISCES (-) |
---|
681 | sedL2: 10.0 # sinking velocity (m/d) |
---|
682 | sL2O3: 0.03 # maximum specific dissolution rate (1/d), default = 1.0 |
---|
683 | c0: 1e-05 # background concentration (mg C/m^3), default = 0.0 |
---|
684 | ndeposition: 1 # number of target pools for sedimentation, default = 1 |
---|
685 | initialization: |
---|
686 | c: 0.05 # carbon (mg C/m^3) |
---|
687 | coupling: |
---|
688 | deposition_target1: bL2 |
---|
689 | om_cal: O3/Om_cal # calcite saturation (-) |
---|
690 | O3c: O3/c # total dissolved inorganic carbon (mmol C/m^3) |
---|
691 | bL2: |
---|
692 | long_name: benthic calcite |
---|
693 | model: ersem/benthic_base |
---|
694 | parameters: |
---|
695 | composition: c # elemental composition |
---|
696 | remin: 0.05 # remineralisation rate (1/d), default = 0.0 |
---|
697 | c0: 1.e-05 # background value for benthic calcite |
---|
698 | initialization: |
---|
699 | c: 0.05 # carbon (mg C/m^2) |
---|
700 | coupling: |
---|
701 | O3c: O3/c # dissolved inorganic carbon (mmol/m^3) |
---|
702 | #Inputs: |
---|
703 | pco2a: |
---|
704 | model: horizontal_constant |
---|
705 | parameters: |
---|
706 | value: 385 |
---|
707 | standard_name: mole_fraction_of_carbon_dioxide_in_air |
---|
708 | N3_flux: |
---|
709 | model: external_surface_flux |
---|
710 | coupling: |
---|
711 | target: N3/n |
---|
712 | N4_flux: |
---|
713 | model: external_surface_flux |
---|
714 | coupling: |
---|
715 | target: N4/n |
---|
716 | #Diagnostics: |
---|
717 | PON: |
---|
718 | long_name: particulate organic nitrogen |
---|
719 | model: weighted_sum |
---|
720 | parameters: |
---|
721 | n: 11 |
---|
722 | weight5: 0.0126 |
---|
723 | coupling: |
---|
724 | term1: P1/n |
---|
725 | term2: P2/n |
---|
726 | term3: P3/n |
---|
727 | term4: P4/n |
---|
728 | term5: Z4/c |
---|
729 | term6: Z5/n |
---|
730 | term7: Z6/n |
---|
731 | term8: B1/n |
---|
732 | term9: R4/n |
---|
733 | term10: R6/n |
---|
734 | term11: R8/n |
---|
735 | POP: |
---|
736 | long_name: particulate organic phosphorus |
---|
737 | model: weighted_sum |
---|
738 | parameters: |
---|
739 | n: 11 |
---|
740 | weight5: 0.000786 |
---|
741 | coupling: |
---|
742 | term1: P1/p |
---|
743 | term2: P2/p |
---|
744 | term3: P3/p |
---|
745 | term4: P4/p |
---|
746 | term5: Z4/c |
---|
747 | term6: Z5/p |
---|
748 | term7: Z6/p |
---|
749 | term8: B1/p |
---|
750 | term9: R4/p |
---|
751 | term10: R6/p |
---|
752 | term11: R8/p |
---|
753 | POSi: |
---|
754 | model: weighted_sum |
---|
755 | parameters: |
---|
756 | n: 3 |
---|
757 | coupling: |
---|
758 | term1: P1/s |
---|
759 | term2: R6/s |
---|
760 | term3: R8/s |
---|
761 | P1_fPIRIc: |
---|
762 | long_name: diatom loss to organic carbon |
---|
763 | model: weighted_sum |
---|
764 | parameters: |
---|
765 | n: 3 |
---|
766 | coupling: |
---|
767 | term1: P1/fPIR1c |
---|
768 | term2: P1/fPIR2c |
---|
769 | term3: P1/fPIRPc |
---|
770 | P2_fPIRIc: |
---|
771 | long_name: nanophytoplankton loss to organic carbon |
---|
772 | model: weighted_sum |
---|
773 | parameters: |
---|
774 | n: 3 |
---|
775 | coupling: |
---|
776 | term1: P2/fPIR1c |
---|
777 | term2: P2/fPIR2c |
---|
778 | term3: P2/fPIRPc |
---|
779 | P3_fPIRIc: |
---|
780 | long_name: picophytoplankton loss to organic carbon |
---|
781 | model: weighted_sum |
---|
782 | parameters: |
---|
783 | n: 3 |
---|
784 | coupling: |
---|
785 | term1: P3/fPIR1c |
---|
786 | term2: P3/fPIR2c |
---|
787 | term3: P3/fPIRPc |
---|
788 | P4_fPIRIc: |
---|
789 | long_name: microphytoplankton loss to organic carbon |
---|
790 | model: weighted_sum |
---|
791 | parameters: |
---|
792 | n: 3 |
---|
793 | coupling: |
---|
794 | term1: P4/fPIR1c |
---|
795 | term2: P4/fPIR2c |
---|
796 | term3: P4/fPIRPc |
---|
797 | phytoplankton_loss_to_labile_DOC: |
---|
798 | long_name: phytoplankton loss to labile dissolved organic carbon |
---|
799 | model: weighted_sum |
---|
800 | parameters: |
---|
801 | n: 4 |
---|
802 | coupling: |
---|
803 | term1: P1/fPIR1c |
---|
804 | term2: P2/fPIR1c |
---|
805 | term3: P3/fPIR1c |
---|
806 | term4: P4/fPIR1c |
---|
807 | phytoplankton_loss_to_labile_DON: |
---|
808 | long_name: phytoplankton loss to labile dissolved organic nitrogen |
---|
809 | model: weighted_sum |
---|
810 | parameters: |
---|
811 | n: 4 |
---|
812 | coupling: |
---|
813 | term1: P1/fPIR1n |
---|
814 | term2: P2/fPIR1n |
---|
815 | term3: P3/fPIR1n |
---|
816 | term4: P4/fPIR1n |
---|
817 | phytoplankton_loss_to_labile_DOP: |
---|
818 | long_name: phytoplankton loss to labile dissolved organic phosphorus |
---|
819 | model: weighted_sum |
---|
820 | parameters: |
---|
821 | n: 4 |
---|
822 | coupling: |
---|
823 | term1: P1/fPIR1p |
---|
824 | term2: P2/fPIR1p |
---|
825 | term3: P3/fPIR1p |
---|
826 | term4: P4/fPIR1p |
---|
827 | phytoplankton_loss_to_non_labile_DOC: |
---|
828 | long_name: phytoplankton loss to non-labile dissolved organic carbon |
---|
829 | model: weighted_sum |
---|
830 | parameters: |
---|
831 | n: 4 |
---|
832 | coupling: |
---|
833 | term1: P1/fPIR2c |
---|
834 | term2: P2/fPIR2c |
---|
835 | term3: P3/fPIR2c |
---|
836 | term4: P4/fPIR2c |
---|
837 | phytoplankton_loss_to_POC: |
---|
838 | long_name: phytoplankton loss to particulate organic carbon |
---|
839 | model: weighted_sum |
---|
840 | parameters: |
---|
841 | n: 4 |
---|
842 | coupling: |
---|
843 | term1: P1/fPIRPc |
---|
844 | term2: P2/fPIRPc |
---|
845 | term3: P3/fPIRPc |
---|
846 | term4: P4/fPIRPc |
---|
847 | phytoplankton_loss_to_PON: |
---|
848 | long_name: phytoplankton loss to particulate organic nitrogen |
---|
849 | model: weighted_sum |
---|
850 | parameters: |
---|
851 | n: 4 |
---|
852 | coupling: |
---|
853 | term1: P1/fPIRPn |
---|
854 | term2: P2/fPIRPn |
---|
855 | term3: P3/fPIRPn |
---|
856 | term4: P4/fPIRPn |
---|
857 | phytoplankton_loss_to_POP: |
---|
858 | long_name: phytoplankton loss to particulate organic phosphorus |
---|
859 | model: weighted_sum |
---|
860 | parameters: |
---|
861 | n: 4 |
---|
862 | coupling: |
---|
863 | term1: P1/fPIRPp |
---|
864 | term2: P2/fPIRPp |
---|
865 | term3: P3/fPIRPp |
---|
866 | term4: P4/fPIRPp |
---|
867 | phytoplankton_uptake_oxN: |
---|
868 | long_name: phytoplankton uptake of oxidized nitrogen |
---|
869 | model: weighted_sum |
---|
870 | parameters: |
---|
871 | n: 4 |
---|
872 | coupling: |
---|
873 | term1: P1/fN3PIn |
---|
874 | term2: P2/fN3PIn |
---|
875 | term3: P3/fN3PIn |
---|
876 | term4: P4/fN3PIn |
---|
877 | phytoplankton_uptake_redN: |
---|
878 | long_name: phytoplankton uptake of reduced nitrogen |
---|
879 | model: weighted_sum |
---|
880 | parameters: |
---|
881 | n: 4 |
---|
882 | coupling: |
---|
883 | term1: P1/fN4PIn |
---|
884 | term2: P2/fN4PIn |
---|
885 | term3: P3/fN4PIn |
---|
886 | term4: P4/fN4PIn |
---|
887 | phytoplankton_uptake_DIP: |
---|
888 | long_name: phytoplankton uptake of dissolved inorganic phosphorus |
---|
889 | model: weighted_sum |
---|
890 | parameters: |
---|
891 | n: 4 |
---|
892 | coupling: |
---|
893 | term1: P1/fN1PIp |
---|
894 | term2: P2/fN1PIp |
---|
895 | term3: P3/fN1PIp |
---|
896 | term4: P4/fN1PIp |
---|
897 | Z4_fphytoc: |
---|
898 | long_name: mesozooplankton grazing of phytoplankton carbon |
---|
899 | model: weighted_sum |
---|
900 | parameters: |
---|
901 | n: 4 |
---|
902 | coupling: |
---|
903 | term1: Z4/fprey1c |
---|
904 | term2: Z4/fprey2c |
---|
905 | term3: Z4/fprey3c |
---|
906 | term4: Z4/fprey4c |
---|
907 | Z4_fphyton: |
---|
908 | long_name: mesozooplankton grazing of phytoplankton nitrogen |
---|
909 | model: weighted_sum |
---|
910 | parameters: |
---|
911 | n: 4 |
---|
912 | coupling: |
---|
913 | term1: Z4/fprey1n |
---|
914 | term2: Z4/fprey2n |
---|
915 | term3: Z4/fprey3n |
---|
916 | term4: Z4/fprey4n |
---|
917 | Z4_fphytop: |
---|
918 | long_name: mesozooplankton grazing of phytoplankton phosphorus |
---|
919 | model: weighted_sum |
---|
920 | parameters: |
---|
921 | n: 4 |
---|
922 | coupling: |
---|
923 | term1: Z4/fprey1p |
---|
924 | term2: Z4/fprey2p |
---|
925 | term3: Z4/fprey3p |
---|
926 | term4: Z4/fprey4p |
---|
927 | Z4_fzooc: |
---|
928 | long_name: mesozooplankton predation of phytoplankton carbon |
---|
929 | model: weighted_sum |
---|
930 | parameters: |
---|
931 | n: 3 |
---|
932 | coupling: |
---|
933 | term1: Z4/fprey5c |
---|
934 | term2: Z4/fprey6c |
---|
935 | term3: Z4/fprey7c |
---|
936 | Z4_fzoon: |
---|
937 | long_name: mesozooplankton predation of phytoplankton nitrogen |
---|
938 | model: weighted_sum |
---|
939 | parameters: |
---|
940 | n: 3 |
---|
941 | coupling: |
---|
942 | term1: Z4/fprey5n |
---|
943 | term2: Z4/fprey6n |
---|
944 | term3: Z4/fprey7n |
---|
945 | Z4_fzoop: |
---|
946 | long_name: mesozooplankton predation of zooplankton phosphorus |
---|
947 | model: weighted_sum |
---|
948 | parameters: |
---|
949 | n: 3 |
---|
950 | coupling: |
---|
951 | term1: Z4/fprey5p |
---|
952 | term2: Z4/fprey6p |
---|
953 | term3: Z4/fprey7p |
---|
954 | Z5_fphytoc: |
---|
955 | long_name: microzooplankton grazing of phytoplankton carbon |
---|
956 | model: weighted_sum |
---|
957 | parameters: |
---|
958 | n: 4 |
---|
959 | coupling: |
---|
960 | term1: Z5/fprey2c |
---|
961 | term2: Z5/fprey3c |
---|
962 | term3: Z5/fprey4c |
---|
963 | term4: Z5/fprey5c |
---|
964 | Z5_fphyton: |
---|
965 | long_name: microzooplankton grazing of phytoplankton nitrogen |
---|
966 | model: weighted_sum |
---|
967 | parameters: |
---|
968 | n: 4 |
---|
969 | coupling: |
---|
970 | term1: Z5/fprey2n |
---|
971 | term2: Z5/fprey3n |
---|
972 | term3: Z5/fprey4n |
---|
973 | term4: Z5/fprey5n |
---|
974 | Z5_fphytop: |
---|
975 | long_name: microzooplankton grazing of phytoplankton phosphorus |
---|
976 | model: weighted_sum |
---|
977 | parameters: |
---|
978 | n: 4 |
---|
979 | coupling: |
---|
980 | term1: Z5/fprey2p |
---|
981 | term2: Z5/fprey3p |
---|
982 | term3: Z5/fprey4p |
---|
983 | term4: Z5/fprey5p |
---|
984 | Z5_fzooc: |
---|
985 | long_name: microzooplankton predation of zooplankton carbon |
---|
986 | model: weighted_sum |
---|
987 | parameters: |
---|
988 | n: 2 |
---|
989 | coupling: |
---|
990 | term1: Z5/fprey6c |
---|
991 | term2: Z5/fprey7c |
---|
992 | Z5_fzoon: |
---|
993 | long_name: microzooplankton predation of zooplankton nitrogen |
---|
994 | model: weighted_sum |
---|
995 | parameters: |
---|
996 | n: 2 |
---|
997 | coupling: |
---|
998 | term1: Z5/fprey6n |
---|
999 | term2: Z5/fprey7n |
---|
1000 | Z5_fzoop: |
---|
1001 | long_name: microzooplankton predation of zooplankton phosphorus |
---|
1002 | model: weighted_sum |
---|
1003 | parameters: |
---|
1004 | n: 2 |
---|
1005 | coupling: |
---|
1006 | term1: Z5/fprey6p |
---|
1007 | term2: Z5/fprey7p |
---|
1008 | Z6_fphytoc: |
---|
1009 | long_name: heterotrophic flagellate grazing of phytoplankton carbon |
---|
1010 | model: weighted_sum |
---|
1011 | parameters: |
---|
1012 | n: 2 |
---|
1013 | coupling: |
---|
1014 | term1: Z6/fprey2c |
---|
1015 | term2: Z6/fprey3c |
---|
1016 | Z6_fphyton: |
---|
1017 | long_name: heterotrophic flagellate grazing of phytoplankton nitrogen |
---|
1018 | model: weighted_sum |
---|
1019 | parameters: |
---|
1020 | n: 2 |
---|
1021 | coupling: |
---|
1022 | term1: Z6/fprey2n |
---|
1023 | term2: Z6/fprey3n |
---|
1024 | Z6_fphytop: |
---|
1025 | long_name: heterotrophic flagellate grazing of phytoplankton phosphorus |
---|
1026 | model: weighted_sum |
---|
1027 | parameters: |
---|
1028 | n: 2 |
---|
1029 | coupling: |
---|
1030 | term1: Z6/fprey2p |
---|
1031 | term2: Z6/fprey3p |
---|
1032 | total_microzooplankton_loss_to_POC: |
---|
1033 | long_name: total microzooplankton loss to particulate organic carbon |
---|
1034 | model: weighted_sum |
---|
1035 | parameters: |
---|
1036 | n: 2 |
---|
1037 | coupling: |
---|
1038 | term1: Z5/fZIRPc |
---|
1039 | term2: Z6/fZIRPc |
---|
1040 | total_microzooplankton_loss_to_PON: |
---|
1041 | long_name: total microzooplankton loss to particulate organic nitrogen |
---|
1042 | model: weighted_sum |
---|
1043 | parameters: |
---|
1044 | n: 2 |
---|
1045 | coupling: |
---|
1046 | term1: Z5/fZIRPn |
---|
1047 | term2: Z6/fZIRPn |
---|
1048 | total_microzooplankton_loss_to_POP: |
---|
1049 | long_name: total microzooplankton loss to particulate organic phosphorus |
---|
1050 | model: weighted_sum |
---|
1051 | parameters: |
---|
1052 | n: 2 |
---|
1053 | coupling: |
---|
1054 | term1: Z5/fZIRPp |
---|
1055 | term2: Z6/fZIRPp |
---|
1056 | total_microzooplankton_loss_to_DOC: |
---|
1057 | long_name: total microzooplankton loss to dissolved organic carbon |
---|
1058 | model: weighted_sum |
---|
1059 | parameters: |
---|
1060 | n: 2 |
---|
1061 | coupling: |
---|
1062 | term1: Z5/fZIRDc |
---|
1063 | term2: Z6/fZIRDc |
---|
1064 | total_microzooplankton_loss_to_DON: |
---|
1065 | long_name: total microzooplankton loss to dissolved organic nitrogen |
---|
1066 | model: weighted_sum |
---|
1067 | parameters: |
---|
1068 | n: 2 |
---|
1069 | coupling: |
---|
1070 | term1: Z5/fZIRDn |
---|
1071 | term2: Z6/fZIRDn |
---|
1072 | total_microzooplankton_loss_to_DOP: |
---|
1073 | long_name: total microzooplankton loss to dissolved organic phosphorus |
---|
1074 | model: weighted_sum |
---|
1075 | parameters: |
---|
1076 | n: 2 |
---|
1077 | coupling: |
---|
1078 | term1: Z5/fZIRDp |
---|
1079 | term2: Z6/fZIRDp |
---|
1080 | total_microzooplankton_respiration: |
---|
1081 | long_name: total microzooplankton respiration |
---|
1082 | model: weighted_sum |
---|
1083 | parameters: |
---|
1084 | n: 2 |
---|
1085 | coupling: |
---|
1086 | term1: Z5/fZIO3c |
---|
1087 | term2: Z6/fZIO3c |
---|
1088 | total_microzooplankton_loss_to_DIN: |
---|
1089 | long_name: total microzooplankton loss to dissolved inorganic nitrogen |
---|
1090 | model: weighted_sum |
---|
1091 | parameters: |
---|
1092 | n: 2 |
---|
1093 | coupling: |
---|
1094 | term1: Z5/fZINIn |
---|
1095 | term2: Z6/fZINIn |
---|
1096 | total_microzooplankton_loss_to_DIP: |
---|
1097 | long_name: total microzooplankton loss to dissolved inorganic phosphorus |
---|
1098 | model: weighted_sum |
---|
1099 | parameters: |
---|
1100 | n: 2 |
---|
1101 | coupling: |
---|
1102 | term1: Z5/fZINIp |
---|
1103 | term2: Z6/fZINIp |
---|
1104 | gross_calcification_rate: |
---|
1105 | long_name: gross calcification rate |
---|
1106 | model: weighted_sum |
---|
1107 | parameters: |
---|
1108 | n: 4 |
---|
1109 | coupling: |
---|
1110 | term1: P2/calcification |
---|
1111 | term2: Z4/calcification |
---|
1112 | term3: Z5/calcification |
---|
1113 | term4: Z6/calcification |
---|
1114 | ben_PON: |
---|
1115 | long_name: benthic particulate organic nitrogen |
---|
1116 | model: horizontal_weighted_sum |
---|
1117 | parameters: |
---|
1118 | n: 2 |
---|
1119 | coupling: |
---|
1120 | term1: Q6/n |
---|
1121 | term2: Q7/n |
---|
1122 | ben_POP: |
---|
1123 | long_name: benthic particulate organic phosphate |
---|
1124 | model: horizontal_weighted_sum |
---|
1125 | parameters: |
---|
1126 | n: 2 |
---|
1127 | coupling: |
---|
1128 | term1: Q6/p |
---|
1129 | term2: Q7/p |
---|
1130 | Q6_remins: |
---|
1131 | long_name: benthic remineralisation of silicate |
---|
1132 | model: horizontal_weighted_sum |
---|
1133 | parameters: |
---|
1134 | n: 1 |
---|
1135 | weight1: 0.007 |
---|
1136 | coupling: |
---|
1137 | term1: Q6/s |
---|
1138 | net_PelBen_POC: |
---|
1139 | long_name: flux of particulate organic carbon from pelagic to benthos |
---|
1140 | model: horizontal_weighted_sum |
---|
1141 | parameters: |
---|
1142 | n: 13 |
---|
1143 | weight13: -1. |
---|
1144 | coupling: |
---|
1145 | term1: R4/dep1c |
---|
1146 | term2: R4/dep2c |
---|
1147 | term3: R6/dep1c |
---|
1148 | term4: R6/dep2c |
---|
1149 | term5: R8/dep1c |
---|
1150 | term6: R8/dep2c |
---|
1151 | term7: P1/dep1c |
---|
1152 | term8: P1/dep2c |
---|
1153 | term9: P1/dep3c |
---|
1154 | term10: P4/dep1c |
---|
1155 | term11: P4/dep2c |
---|
1156 | term12: P4/dep3c |
---|
1157 | term13: Q6/resuspension_flux_c |
---|
1158 | net_PelBen_PON: |
---|
1159 | long_name: flux of particulate organic nitrogen from pelagic to benthos |
---|
1160 | model: horizontal_weighted_sum |
---|
1161 | parameters: |
---|
1162 | n: 13 |
---|
1163 | weight13: -1. |
---|
1164 | coupling: |
---|
1165 | term1: R4/dep1n |
---|
1166 | term2: R4/dep2n |
---|
1167 | term3: R6/dep1n |
---|
1168 | term4: R6/dep2n |
---|
1169 | term5: R8/dep1n |
---|
1170 | term6: R8/dep2n |
---|
1171 | term7: P1/dep1n |
---|
1172 | term8: P1/dep2n |
---|
1173 | term9: P1/dep3n |
---|
1174 | term10: P4/dep1n |
---|
1175 | term11: P4/dep2n |
---|
1176 | term12: P4/dep3n |
---|
1177 | term13: Q6/resuspension_flux_n |
---|
1178 | net_PelBen_POP: |
---|
1179 | long_name: flux of particulate organic phosphorus from pelagic to benthos |
---|
1180 | model: horizontal_weighted_sum |
---|
1181 | parameters: |
---|
1182 | n: 13 |
---|
1183 | weight13: -1. |
---|
1184 | coupling: |
---|
1185 | term1: R4/dep1p |
---|
1186 | term2: R4/dep2p |
---|
1187 | term3: R6/dep1p |
---|
1188 | term4: R6/dep2p |
---|
1189 | term5: R8/dep1p |
---|
1190 | term6: R8/dep2p |
---|
1191 | term7: P1/dep1p |
---|
1192 | term8: P1/dep2p |
---|
1193 | term9: P1/dep3p |
---|
1194 | term10: P4/dep1p |
---|
1195 | term11: P4/dep2p |
---|
1196 | term12: P4/dep3p |
---|
1197 | term13: Q6/resuspension_flux_p |
---|
1198 | net_PelBen_POSi: |
---|
1199 | long_name: flux of particulate organic silicate from pelagic to benthos |
---|
1200 | model: horizontal_weighted_sum |
---|
1201 | parameters: |
---|
1202 | n: 4 |
---|
1203 | weight4: -1. |
---|
1204 | coupling: |
---|
1205 | term1: R6/dep1s |
---|
1206 | term2: R8/dep1s |
---|
1207 | term3: P1/dep1s |
---|
1208 | term4: Q6/resuspension_flux_s |
---|