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iom.F90 @ 14643

Last change on this file since 14643 was 14643, checked in by dancopsey, 3 years ago
Output timing information
File size: 129.8 KB

Rev	Line
[544]	1	MODULE iom
[9019]	2	!!======================================================================
[544]	3	!! * MODULE iom *
	4	!! Input/Output manager : Library to read input files
[9019]	5	!!======================================================================
[3764]	6	!! History : 2.0 ! 2005-12 (J. Belier) Original code
	7	!! 2.0 ! 2006-02 (S. Masson) Adaptation to NEMO
	8	!! 3.0 ! 2007-07 (D. Storkey) Changes to iom_gettime
	9	!! 3.4 ! 2012-12 (R. Bourdalle-Badie and G. Reffray) add C1D case
[6140]	10	!! 3.6 ! 2014-15 DIMG format removed
[7646]	11	!! 3.6 ! 2015-15 (J. Harle) Added procedure to read REAL attributes
[9019]	12	!! 4.0 ! 2017-11 (M. Andrejczuk) Extend IOM interface to write any 3D fields
	13	!!----------------------------------------------------------------------
[544]	14
[9019]	15	!!----------------------------------------------------------------------
[544]	16	!! iom_open : open a file read only
	17	!! iom_close : close a file or all files opened by iom
	18	!! iom_get : read a field (interfaced to several routines)
	19	!! iom_varid : get the id of a variable in a file
	20	!! iom_rstput : write a field in a restart file (interfaced to several routines)
[9019]	21	!!----------------------------------------------------------------------
[544]	22	USE dom_oce ! ocean space and time domain
[3764]	23	USE c1d ! 1D vertical configuration
[3294]	24	USE flo_oce ! floats module declarations
[679]	25	USE lbclnk ! lateal boundary condition / mpp exchanges
[544]	26	USE iom_def ! iom variables definitions
	27	USE iom_nf90 ! NetCDF format with native NetCDF library
[2715]	28	USE in_out_manager ! I/O manager
	29	USE lib_mpp ! MPP library
[1412]	30	#if defined key_iomput
[9019]	31	USE sbc_oce , ONLY : nn_fsbc ! ocean space and time domain
	32	USE trc_oce , ONLY : nn_dttrc ! !: frequency of step on passive tracers
	33	USE icb_oce , ONLY : nclasses, class_num ! !: iceberg classes
[9570]	34	#if defined key_si3
[9019]	35	USE ice , ONLY : jpl
[4691]	36	#endif
[1725]	37	USE domngb ! ocean space and time domain
	38	USE phycst ! physical constants
	39	USE dianam ! build name of file
[3695]	40	USE xios
[1359]	41	# endif
[4148]	42	USE ioipsl, ONLY : ju2ymds ! for calendar
[4152]	43	USE crs ! Grid coarsening
[10222]	44	#if defined key_top
	45	USE trc, ONLY : profsed
	46	#endif
[9367]	47	USE lib_fortran
	48	USE diurnal_bulk, ONLY : ln_diurnal_only, ln_diurnal
[14643]	49	USE timing
[1359]	50
[544]	51	IMPLICIT NONE
[556]	52	PUBLIC ! must be public to be able to access iom_def through iom
[550]	53
[1457]	54	#if defined key_iomput
[1725]	55	LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .TRUE. !: iom_put flag
[1457]	56	#else
	57	LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .FALSE. !: iom_put flag
	58	#endif
[12276]	59	PUBLIC iom_init, iom_swap, iom_open, iom_close, iom_setkt, iom_varid, iom_get, iom_get_var
[10522]	60	PUBLIC iom_chkatt, iom_getatt, iom_putatt, iom_getszuld, iom_rstput, iom_delay_rst, iom_put
[11536]	61	PUBLIC iom_use, iom_context_finalize, iom_miss_val
[544]	62
[752]	63	PRIVATE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d
	64	PRIVATE iom_g0d, iom_g1d, iom_g2d, iom_g3d, iom_get_123d
[12276]	65	PRIVATE iom_p1d, iom_p2d, iom_p3d, iom_p4d
[1412]	66	#if defined key_iomput
[4148]	67	PRIVATE iom_set_domain_attr, iom_set_axis_attr, iom_set_field_attr, iom_set_file_attr, iom_get_file_attr, iom_set_grid_attr
[5363]	68	PRIVATE set_grid, set_grid_bounds, set_scalar, set_xmlatt, set_mooring, iom_update_file_name, iom_sdate
[9367]	69	PRIVATE iom_set_rst_context, iom_set_rstw_active, iom_set_rstr_active
[1359]	70	# endif
[9535]	71	PUBLIC iom_set_rstw_var_active, iom_set_rstw_core, iom_set_rst_vars
[752]	72
[544]	73	INTERFACE iom_get
[550]	74	MODULE PROCEDURE iom_g0d, iom_g1d, iom_g2d, iom_g3d
[544]	75	END INTERFACE
[2528]	76	INTERFACE iom_getatt
[10425]	77	MODULE PROCEDURE iom_g0d_iatt, iom_g1d_iatt, iom_g0d_ratt, iom_g1d_ratt, iom_g0d_catt
[2528]	78	END INTERFACE
[7646]	79	INTERFACE iom_putatt
[10425]	80	MODULE PROCEDURE iom_p0d_iatt, iom_p1d_iatt, iom_p0d_ratt, iom_p1d_ratt, iom_p0d_catt
[7646]	81	END INTERFACE
[544]	82	INTERFACE iom_rstput
[550]	83	MODULE PROCEDURE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d
[544]	84	END INTERFACE
[9802]	85	INTERFACE iom_put
[12276]	86	MODULE PROCEDURE iom_p0d, iom_p1d, iom_p2d, iom_p3d, iom_p4d
[9802]	87	END INTERFACE iom_put
	88
[544]	89	!!----------------------------------------------------------------------
[9598]	90	!! NEMO/OCE 4.0 , NEMO Consortium (2018)
[1152]	91	!! $Id$
[10068]	92	!! Software governed by the CeCILL license (see ./LICENSE)
[544]	93	!!----------------------------------------------------------------------
	94	CONTAINS
	95
[9903]	96	SUBROUTINE iom_init( cdname, fname, ld_tmppatch )
[1359]	97	!!----------------------------------------------------------------------
	98	!! * ROUTINE *
	99	!!
	100	!! ** Purpose :
	101	!!
	102	!!----------------------------------------------------------------------
[9903]	103	CHARACTER(len=*), INTENT(in) :: cdname
[9367]	104	CHARACTER(len=*), OPTIONAL, INTENT(in) :: fname
[9903]	105	LOGICAL , OPTIONAL, INTENT(in) :: ld_tmppatch
[1412]	106	#if defined key_iomput
[9019]	107	!
[7646]	108	TYPE(xios_duration) :: dtime = xios_duration(0, 0, 0, 0, 0, 0)
	109	TYPE(xios_date) :: start_date
[9367]	110	CHARACTER(len=lc) :: clname
[12276]	111	INTEGER :: irefyear, irefmonth, irefday
[12598]	112	INTEGER :: ji
[9367]	113	LOGICAL :: llrst_context ! is context related to restart
[5415]	114	!
[7646]	115	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zt_bnds, zw_bnds
[9903]	116	LOGICAL :: ll_tmppatch = .TRUE. !: seb: patch before we remove periodicity
	117	INTEGER :: nldi_save, nlei_save !: and close boundaries in output files
	118	INTEGER :: nldj_save, nlej_save !:
[1359]	119	!!----------------------------------------------------------------------
[9019]	120	!
[9802]	121	! seb: patch before we remove periodicity and close boundaries in output files
[9903]	122	IF( PRESENT(ld_tmppatch) ) THEN ; ll_tmppatch = ld_tmppatch
	123	ELSE ; ll_tmppatch = .TRUE.
	124	ENDIF
	125	IF ( ll_tmppatch ) THEN
[9802]	126	nldi_save = nldi ; nlei_save = nlei
	127	nldj_save = nldj ; nlej_save = nlej
	128	IF( nimpp == 1 ) nldi = 1
	129	IF( nimpp + jpi - 1 == jpiglo ) nlei = jpi
	130	IF( njmpp == 1 ) nldj = 1
	131	IF( njmpp + jpj - 1 == jpjglo ) nlej = jpj
	132	ENDIF
	133	!
[7646]	134	ALLOCATE( zt_bnds(2,jpk), zw_bnds(2,jpk) )
[9019]	135	!
[4152]	136	clname = cdname
	137	IF( TRIM(Agrif_CFixed()) /= '0' ) clname = TRIM(Agrif_CFixed())//"_"//TRIM(cdname)
[9570]	138	CALL xios_context_initialize(TRIM(clname), mpi_comm_oce)
[4152]	139	CALL iom_swap( cdname )
[9367]	140	llrst_context = (TRIM(cdname) == TRIM(crxios_context) .OR. TRIM(cdname) == TRIM(cwxios_context))
[1359]	141
[7646]	142	! Calendar type is now defined in xml file
[12276]	143	IF (.NOT.(xios_getvar('ref_year' ,irefyear ))) irefyear = 1900
	144	IF (.NOT.(xios_getvar('ref_month',irefmonth))) irefmonth = 01
	145	IF (.NOT.(xios_getvar('ref_day' ,irefday ))) irefday = 01
	146
[1725]	147	SELECT CASE ( nleapy ) ! Choose calendar for IOIPSL
[12276]	148	CASE ( 1) ; CALL xios_define_calendar( TYPE = "Gregorian", time_origin = xios_date(irefyear,irefmonth,irefday,00,00,00), &
[7646]	149	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
[12276]	150	CASE ( 0) ; CALL xios_define_calendar( TYPE = "NoLeap" , time_origin = xios_date(irefyear,irefmonth,irefday,00,00,00), &
[7646]	151	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
[12276]	152	CASE (30) ; CALL xios_define_calendar( TYPE = "D360" , time_origin = xios_date(irefyear,irefmonth,irefday,00,00,00), &
[7646]	153	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
[1725]	154	END SELECT
[1359]	155
	156	! horizontal grid definition
[9367]	157	IF(.NOT.llrst_context) CALL set_scalar
[9019]	158	!
[5407]	159	IF( TRIM(cdname) == TRIM(cxios_context) ) THEN
[9984]	160	CALL set_grid( "T", glamt, gphit, .FALSE., .FALSE. )
	161	CALL set_grid( "U", glamu, gphiu, .FALSE., .FALSE. )
	162	CALL set_grid( "V", glamv, gphiv, .FALSE., .FALSE. )
	163	CALL set_grid( "W", glamt, gphit, .FALSE., .FALSE. )
[5385]	164	CALL set_grid_znl( gphit )
[5415]	165	!
	166	IF( ln_cfmeta ) THEN ! Add additional grid metadata
[5836]	167	CALL iom_set_domain_attr("grid_T", area = e1e2t(nldi:nlei, nldj:nlej))
	168	CALL iom_set_domain_attr("grid_U", area = e1e2u(nldi:nlei, nldj:nlej))
	169	CALL iom_set_domain_attr("grid_V", area = e1e2v(nldi:nlei, nldj:nlej))
	170	CALL iom_set_domain_attr("grid_W", area = e1e2t(nldi:nlei, nldj:nlej))
[5415]	171	CALL set_grid_bounds( "T", glamf, gphif, glamt, gphit )
	172	CALL set_grid_bounds( "U", glamv, gphiv, glamu, gphiu )
	173	CALL set_grid_bounds( "V", glamu, gphiu, glamv, gphiv )
	174	CALL set_grid_bounds( "W", glamf, gphif, glamt, gphit )
	175	ENDIF
[4152]	176	ENDIF
[9019]	177	!
[5407]	178	IF( TRIM(cdname) == TRIM(cxios_context)//"_crs" ) THEN
[4152]	179	CALL dom_grid_crs ! Save the parent grid information & Switch to coarse grid domain
	180	!
[9984]	181	CALL set_grid( "T", glamt_crs, gphit_crs, .FALSE., .FALSE. )
	182	CALL set_grid( "U", glamu_crs, gphiu_crs, .FALSE., .FALSE. )
	183	CALL set_grid( "V", glamv_crs, gphiv_crs, .FALSE., .FALSE. )
	184	CALL set_grid( "W", glamt_crs, gphit_crs, .FALSE., .FALSE. )
[5385]	185	CALL set_grid_znl( gphit_crs )
[4152]	186	!
	187	CALL dom_grid_glo ! Return to parent grid domain
[5415]	188	!
[9367]	189	IF( ln_cfmeta .AND. .NOT. llrst_context) THEN ! Add additional grid metadata
[5415]	190	CALL iom_set_domain_attr("grid_T", area = e1e2t_crs(nldi:nlei, nldj:nlej))
	191	CALL iom_set_domain_attr("grid_U", area = e1u_crs(nldi:nlei, nldj:nlej) * e2u_crs(nldi:nlei, nldj:nlej))
	192	CALL iom_set_domain_attr("grid_V", area = e1v_crs(nldi:nlei, nldj:nlej) * e2v_crs(nldi:nlei, nldj:nlej))
	193	CALL iom_set_domain_attr("grid_W", area = e1e2t_crs(nldi:nlei, nldj:nlej))
	194	CALL set_grid_bounds( "T", glamf_crs, gphif_crs, glamt_crs, gphit_crs )
	195	CALL set_grid_bounds( "U", glamv_crs, gphiv_crs, glamu_crs, gphiu_crs )
	196	CALL set_grid_bounds( "V", glamu_crs, gphiu_crs, glamv_crs, gphiv_crs )
	197	CALL set_grid_bounds( "W", glamf_crs, gphif_crs, glamt_crs, gphit_crs )
	198	ENDIF
[4152]	199	ENDIF
[9019]	200	!
[1359]	201	! vertical grid definition
[9367]	202	IF(.NOT.llrst_context) THEN
[10222]	203	CALL iom_set_axis_attr( "deptht", paxis = gdept_1d )
	204	CALL iom_set_axis_attr( "depthu", paxis = gdept_1d )
	205	CALL iom_set_axis_attr( "depthv", paxis = gdept_1d )
	206	CALL iom_set_axis_attr( "depthw", paxis = gdepw_1d )
[9367]	207
	208	! Add vertical grid bounds
	209	zt_bnds(2,: ) = gdept_1d(:)
[12598]	210	zt_bnds(1,2:jpk ) = gdept_1d(1:jpkm1)
[9367]	211	zt_bnds(1,1 ) = gdept_1d(1) - e3w_1d(1)
	212	zw_bnds(1,: ) = gdepw_1d(:)
[12598]	213	zw_bnds(2,1:jpkm1 ) = gdepw_1d(2:jpk)
[9367]	214	zw_bnds(2,jpk: ) = gdepw_1d(jpk) + e3t_1d(jpk)
[10361]	215	CALL iom_set_axis_attr( "deptht", bounds=zw_bnds )
	216	CALL iom_set_axis_attr( "depthu", bounds=zw_bnds )
	217	CALL iom_set_axis_attr( "depthv", bounds=zw_bnds )
	218	CALL iom_set_axis_attr( "depthw", bounds=zt_bnds )
[9580]	219	CALL iom_set_axis_attr( "nfloat", (/ (REAL(ji,wp), ji=1,jpnfl) /) )
[9570]	220	# if defined key_si3
[9367]	221	CALL iom_set_axis_attr( "ncatice", (/ (REAL(ji,wp), ji=1,jpl) /) )
	222	! SIMIP diagnostics (4 main arctic straits)
	223	CALL iom_set_axis_attr( "nstrait", (/ (REAL(ji,wp), ji=1,4) /) )
[9019]	224	# endif
[10222]	225	#if defined key_top
[10817]	226	IF( ALLOCATED(profsed) ) CALL iom_set_axis_attr( "profsed", paxis = profsed )
[10222]	227	#endif
[9367]	228	CALL iom_set_axis_attr( "icbcla", class_num )
[10817]	229	CALL iom_set_axis_attr( "iax_20C", (/ REAL(20,wp) /) ) ! strange syntaxe and idea...
[12276]	230	CALL iom_set_axis_attr( "iax_26C", (/ REAL(26,wp) /) ) ! strange syntaxe and idea...
[10817]	231	CALL iom_set_axis_attr( "iax_28C", (/ REAL(28,wp) /) ) ! strange syntaxe and idea...
[12276]	232	CALL iom_set_axis_attr( "basin" , (/ (REAL(ji,wp), ji=1,5) /) )
[9367]	233	ENDIF
	234	!
[1725]	235	! automatic definitions of some of the xml attributs
[9367]	236	IF( TRIM(cdname) == TRIM(crxios_context) ) THEN
	237	!set names of the fields in restart file IF using XIOS to read data
[9984]	238	CALL iom_set_rst_context(.TRUE.)
[9367]	239	CALL iom_set_rst_vars(rst_rfields)
	240	!set which fields are to be read from restart file
	241	CALL iom_set_rstr_active()
	242	ELSE IF( TRIM(cdname) == TRIM(cwxios_context) ) THEN
	243	!set names of the fields in restart file IF using XIOS to write data
[9984]	244	CALL iom_set_rst_context(.FALSE.)
[9367]	245	CALL iom_set_rst_vars(rst_wfields)
	246	!set which fields are to be written to a restart file
	247	CALL iom_set_rstw_active(fname)
	248	ELSE
	249	CALL set_xmlatt
	250	ENDIF
[9019]	251	!
[1359]	252	! end file definition
[4148]	253	dtime%second = rdt
[9019]	254	CALL xios_set_timestep( dtime )
[4148]	255	CALL xios_close_context_definition()
[9019]	256	CALL xios_update_calendar( 0 )
	257	!
[7646]	258	DEALLOCATE( zt_bnds, zw_bnds )
[9019]	259	!
[9903]	260	IF ( ll_tmppatch ) THEN
[9802]	261	nldi = nldi_save ; nlei = nlei_save
	262	nldj = nldj_save ; nlej = nlej_save
	263	ENDIF
[1359]	264	#endif
[9019]	265	!
[1359]	266	END SUBROUTINE iom_init
	267
[9367]	268	SUBROUTINE iom_set_rstw_var_active(field)
	269	!!---------------------------------------------------------------------
	270	!! * SUBROUTINE iom_set_rstw_var_active *
	271	!!
	272	!! ** Purpose : enable variable in restart file when writing with XIOS
	273	!!---------------------------------------------------------------------
	274	CHARACTER(len = *), INTENT(IN) :: field
	275	INTEGER :: i
	276	LOGICAL :: llis_set
[9535]	277	CHARACTER(LEN=256) :: clinfo ! info character
[1359]	278
[9535]	279	#if defined key_iomput
[9367]	280	llis_set = .FALSE.
	281
	282	DO i = 1, max_rst_fields
	283	IF(TRIM(rst_wfields(i)%vname) == field) THEN
	284	rst_wfields(i)%active = .TRUE.
	285	llis_set = .TRUE.
	286	EXIT
	287	ENDIF
	288	ENDDO
	289	!Warn if variable is not in defined in rst_wfields
	290	IF(.NOT.llis_set) THEN
[10425]	291	WRITE(ctmp1,*) 'iom_set_rstw_var_active: variable ', field ,' is available for writing but not defined'
	292	CALL ctl_stop( 'iom_set_rstw_var_active:', ctmp1 )
[9367]	293	ENDIF
[9535]	294	#else
[9536]	295	clinfo = 'iom_set_rstw_var_active: key_iomput is needed to use XIOS restart read/write functionality'
	296	CALL ctl_stop('STOP', TRIM(clinfo))
[9535]	297	#endif
[9367]	298
	299	END SUBROUTINE iom_set_rstw_var_active
	300
	301	SUBROUTINE iom_set_rstr_active()
	302	!!---------------------------------------------------------------------
	303	!! * SUBROUTINE iom_set_rstr_active *
	304	!!
	305	!! ** Purpose : define file name in XIOS context for reading restart file,
	306	!! enable variables present in restart file for reading with XIOS
	307	!!---------------------------------------------------------------------
	308
	309	!sets enabled = .TRUE. for each field in restart file
	310	CHARACTER(len=256) :: rst_file
[9535]	311
	312	#if defined key_iomput
[9367]	313	TYPE(xios_field) :: field_hdl
	314	TYPE(xios_file) :: file_hdl
	315	TYPE(xios_filegroup) :: filegroup_hdl
	316	INTEGER :: i
	317	CHARACTER(lc) :: clpath
	318
	319	clpath = TRIM(cn_ocerst_indir)
	320	IF( clpath(LEN_TRIM(clpath):) /= '/' ) clpath = TRIM(clpath) // '/'
	321	IF( TRIM(Agrif_CFixed()) == '0' ) THEN
	322	rst_file = TRIM(clpath)//TRIM(cn_ocerst_in)
	323	ELSE
[13297]	324	rst_file = TRIM(clpath)//TRIM(Agrif_CFixed())//'_'//TRIM(cn_ocerst_in)
[9367]	325	ENDIF
	326	!set name of the restart file and enable available fields
	327	if(lwp) WRITE(numout,*) 'Setting restart filename (for XIOS) to: ',rst_file
	328	CALL xios_get_handle("file_definition", filegroup_hdl )
	329	CALL xios_add_child(filegroup_hdl, file_hdl, 'rrestart')
	330	CALL xios_set_file_attr( "rrestart", name=trim(rst_file), type="one_file", &
	331	par_access="collective", enabled=.TRUE., mode="read", &
	332	output_freq=xios_timestep)
	333	!define variables for restart context
	334	DO i = 1, max_rst_fields
	335	IF( TRIM(rst_rfields(i)%vname) /= "NO_NAME") THEN
	336	IF( iom_varid( numror, TRIM(rst_rfields(i)%vname), ldstop = .FALSE. ) > 0 ) THEN
	337	CALL xios_add_child(file_hdl, field_hdl, TRIM(rst_rfields(i)%vname))
	338	SELECT CASE (TRIM(rst_rfields(i)%grid))
	339	CASE ("grid_N_3D")
	340	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(rst_rfields(i)%vname), &
	341	domain_ref="grid_N", axis_ref="nav_lev", operation = "instant")
	342	CASE ("grid_N")
	343	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(rst_rfields(i)%vname), &
	344	domain_ref="grid_N", operation = "instant")
	345	CASE ("grid_vector")
	346	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(rst_rfields(i)%vname), &
	347	axis_ref="nav_lev", operation = "instant")
	348	CASE ("grid_scalar")
	349	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(rst_rfields(i)%vname), &
	350	scalar_ref = "grid_scalar", operation = "instant")
	351	END SELECT
	352	IF(lwp) WRITE(numout,*) 'XIOS read: ', TRIM(rst_rfields(i)%vname), ' enabled in ', TRIM(rst_file)
	353	ENDIF
	354	ENDIF
	355	END DO
[9535]	356	#endif
[9367]	357	END SUBROUTINE iom_set_rstr_active
	358
	359	SUBROUTINE iom_set_rstw_core(cdmdl)
	360	!!---------------------------------------------------------------------
	361	!! * SUBROUTINE iom_set_rstw_core *
	362	!!
	363	!! ** Purpose : set variables which are always in restart file
	364	!!---------------------------------------------------------------------
	365	CHARACTER (len=*), INTENT (IN) :: cdmdl ! model OPA or SAS
[9535]	366	CHARACTER(LEN=256) :: clinfo ! info character
	367	#if defined key_iomput
[9367]	368	IF(cdmdl == "OPA") THEN
	369	!from restart.F90
	370	CALL iom_set_rstw_var_active("rdt")
	371	IF ( .NOT. ln_diurnal_only ) THEN
	372	CALL iom_set_rstw_var_active('ub' )
	373	CALL iom_set_rstw_var_active('vb' )
	374	CALL iom_set_rstw_var_active('tb' )
	375	CALL iom_set_rstw_var_active('sb' )
	376	CALL iom_set_rstw_var_active('sshb')
	377	!
	378	CALL iom_set_rstw_var_active('un' )
	379	CALL iom_set_rstw_var_active('vn' )
	380	CALL iom_set_rstw_var_active('tn' )
	381	CALL iom_set_rstw_var_active('sn' )
	382	CALL iom_set_rstw_var_active('sshn')
	383	CALL iom_set_rstw_var_active('rhop')
	384	! extra variable needed for the ice sheet coupling
	385	IF ( ln_iscpl ) THEN
	386	CALL iom_set_rstw_var_active('tmask')
	387	CALL iom_set_rstw_var_active('umask')
	388	CALL iom_set_rstw_var_active('vmask')
	389	CALL iom_set_rstw_var_active('smask')
	390	CALL iom_set_rstw_var_active('e3t_n')
	391	CALL iom_set_rstw_var_active('e3u_n')
	392	CALL iom_set_rstw_var_active('e3v_n')
	393	CALL iom_set_rstw_var_active('gdepw_n')
	394	END IF
	395	ENDIF
	396	IF(ln_diurnal) CALL iom_set_rstw_var_active('Dsst')
	397	!from trasbc.F90
	398	CALL iom_set_rstw_var_active('sbc_hc_b')
	399	CALL iom_set_rstw_var_active('sbc_sc_b')
	400	ENDIF
[9535]	401	#else
[9536]	402	clinfo = 'iom_set_rstw_core: key_iomput is needed to use XIOS restart read/write functionality'
	403	CALL ctl_stop('STOP', TRIM(clinfo))
[9535]	404	#endif
[9367]	405	END SUBROUTINE iom_set_rstw_core
	406
	407	SUBROUTINE iom_set_rst_vars(fields)
	408	!!---------------------------------------------------------------------
[9535]	409	!! * SUBROUTINE iom_set_rst_vars *
[9367]	410	!!
	411	!! ** Purpose : Fill array fields with the information about all
	412	!! possible variables and corresponding grids definition
	413	!! for reading/writing restart with XIOS
	414	!!---------------------------------------------------------------------
	415	TYPE(RST_FIELD), INTENT(INOUT) :: fields(max_rst_fields)
[9535]	416	INTEGER :: i
[9367]	417
	418	i = 0
	419	i = i + 1; fields(i)%vname="rdt"; fields(i)%grid="grid_scalar"
	420	i = i + 1; fields(i)%vname="un"; fields(i)%grid="grid_N_3D"
	421	i = i + 1; fields(i)%vname="ub"; fields(i)%grid="grid_N_3D"
	422	i = i + 1; fields(i)%vname="vn"; fields(i)%grid="grid_N_3D"
	423	i = i + 1; fields(i)%vname="vb"; fields(i)%grid="grid_N_3D"
	424	i = i + 1; fields(i)%vname="tn"; fields(i)%grid="grid_N_3D"
	425	i = i + 1; fields(i)%vname="tb"; fields(i)%grid="grid_N_3D"
	426	i = i + 1; fields(i)%vname="sn"; fields(i)%grid="grid_N_3D"
	427	i = i + 1; fields(i)%vname="sb"; fields(i)%grid="grid_N_3D"
	428	i = i + 1; fields(i)%vname="sshn"; fields(i)%grid="grid_N"
	429	i = i + 1; fields(i)%vname="sshb"; fields(i)%grid="grid_N"
	430	i = i + 1; fields(i)%vname="rhop"; fields(i)%grid="grid_N_3D"
	431	i = i + 1; fields(i)%vname="kt"; fields(i)%grid="grid_scalar"
	432	i = i + 1; fields(i)%vname="ndastp"; fields(i)%grid="grid_scalar"
	433	i = i + 1; fields(i)%vname="adatrj"; fields(i)%grid="grid_scalar"
	434	i = i + 1; fields(i)%vname="utau_b"; fields(i)%grid="grid_N"
	435	i = i + 1; fields(i)%vname="vtau_b"; fields(i)%grid="grid_N"
	436	i = i + 1; fields(i)%vname="qns_b"; fields(i)%grid="grid_N"
	437	i = i + 1; fields(i)%vname="emp_b"; fields(i)%grid="grid_N"
	438	i = i + 1; fields(i)%vname="sfx_b"; fields(i)%grid="grid_N"
	439	i = i + 1; fields(i)%vname="en" ; fields(i)%grid="grid_N_3D"
	440	i = i + 1; fields(i)%vname="avt_k"; fields(i)%grid="grid_N_3D"
	441	i = i + 1; fields(i)%vname="avm_k"; fields(i)%grid="grid_N_3D"
	442	i = i + 1; fields(i)%vname="dissl"; fields(i)%grid="grid_N_3D"
	443	i = i + 1; fields(i)%vname="sbc_hc_b"; fields(i)%grid="grid_N"
	444	i = i + 1; fields(i)%vname="sbc_sc_b"; fields(i)%grid="grid_N"
	445	i = i + 1; fields(i)%vname="qsr_hc_b"; fields(i)%grid="grid_N_3D"
	446	i = i + 1; fields(i)%vname="fraqsr_1lev"; fields(i)%grid="grid_N"
	447	i = i + 1; fields(i)%vname="greenland_icesheet_mass"
	448	fields(i)%grid="grid_scalar"
	449	i = i + 1; fields(i)%vname="greenland_icesheet_timelapsed"
	450	fields(i)%grid="grid_scalar"
	451	i = i + 1; fields(i)%vname="greenland_icesheet_mass_roc"
	452	fields(i)%grid="grid_scalar"
	453	i = i + 1; fields(i)%vname="antarctica_icesheet_mass"
	454	fields(i)%grid="grid_scalar"
	455	i = i + 1; fields(i)%vname="antarctica_icesheet_timelapsed"
	456	fields(i)%grid="grid_scalar"
	457	i = i + 1; fields(i)%vname="antarctica_icesheet_mass_roc"
	458	fields(i)%grid="grid_scalar"
	459	i = i + 1; fields(i)%vname="frc_v"; fields(i)%grid="grid_scalar"
	460	i = i + 1; fields(i)%vname="frc_t"; fields(i)%grid="grid_scalar"
	461	i = i + 1; fields(i)%vname="frc_s"; fields(i)%grid="grid_scalar"
	462	i = i + 1; fields(i)%vname="frc_wn_t"; fields(i)%grid="grid_scalar"
	463	i = i + 1; fields(i)%vname="frc_wn_s"; fields(i)%grid="grid_scalar"
	464	i = i + 1; fields(i)%vname="ssh_ini"; fields(i)%grid="grid_N"
	465	i = i + 1; fields(i)%vname="e3t_ini"; fields(i)%grid="grid_N_3D"
	466	i = i + 1; fields(i)%vname="hc_loc_ini"; fields(i)%grid="grid_N_3D"
	467	i = i + 1; fields(i)%vname="sc_loc_ini"; fields(i)%grid="grid_N_3D"
	468	i = i + 1; fields(i)%vname="ssh_hc_loc_ini"; fields(i)%grid="grid_N"
	469	i = i + 1; fields(i)%vname="ssh_sc_loc_ini"; fields(i)%grid="grid_N"
	470	i = i + 1; fields(i)%vname="tilde_e3t_b"; fields(i)%grid="grid_N"
	471	i = i + 1; fields(i)%vname="tilde_e3t_n"; fields(i)%grid="grid_N"
	472	i = i + 1; fields(i)%vname="hdiv_lf"; fields(i)%grid="grid_N"
	473	i = i + 1; fields(i)%vname="ub2_b"; fields(i)%grid="grid_N"
	474	i = i + 1; fields(i)%vname="vb2_b"; fields(i)%grid="grid_N"
	475	i = i + 1; fields(i)%vname="sshbb_e"; fields(i)%grid="grid_N"
	476	i = i + 1; fields(i)%vname="ubb_e"; fields(i)%grid="grid_N"
	477	i = i + 1; fields(i)%vname="vbb_e"; fields(i)%grid="grid_N"
	478	i = i + 1; fields(i)%vname="sshb_e"; fields(i)%grid="grid_N"
	479	i = i + 1; fields(i)%vname="ub_e"; fields(i)%grid="grid_N"
	480	i = i + 1; fields(i)%vname="vb_e"; fields(i)%grid="grid_N"
	481	i = i + 1; fields(i)%vname="fwf_isf_b"; fields(i)%grid="grid_N"
	482	i = i + 1; fields(i)%vname="isf_sc_b"; fields(i)%grid="grid_N"
	483	i = i + 1; fields(i)%vname="isf_hc_b"; fields(i)%grid="grid_N"
	484	i = i + 1; fields(i)%vname="ssh_ibb"; fields(i)%grid="grid_N"
	485	i = i + 1; fields(i)%vname="rnf_b"; fields(i)%grid="grid_N"
	486	i = i + 1; fields(i)%vname="rnf_hc_b"; fields(i)%grid="grid_N"
	487	i = i + 1; fields(i)%vname="rnf_sc_b"; fields(i)%grid="grid_N"
	488	i = i + 1; fields(i)%vname="nn_fsbc"; fields(i)%grid="grid_scalar"
	489	i = i + 1; fields(i)%vname="ssu_m"; fields(i)%grid="grid_N"
	490	i = i + 1; fields(i)%vname="ssv_m"; fields(i)%grid="grid_N"
	491	i = i + 1; fields(i)%vname="sst_m"; fields(i)%grid="grid_N"
	492	i = i + 1; fields(i)%vname="sss_m"; fields(i)%grid="grid_N"
	493	i = i + 1; fields(i)%vname="ssh_m"; fields(i)%grid="grid_N"
	494	i = i + 1; fields(i)%vname="e3t_m"; fields(i)%grid="grid_N"
	495	i = i + 1; fields(i)%vname="frq_m"; fields(i)%grid="grid_N"
	496	i = i + 1; fields(i)%vname="avmb"; fields(i)%grid="grid_vector"
	497	i = i + 1; fields(i)%vname="avtb"; fields(i)%grid="grid_vector"
	498	i = i + 1; fields(i)%vname="ub2_i_b"; fields(i)%grid="grid_N"
	499	i = i + 1; fields(i)%vname="vb2_i_b"; fields(i)%grid="grid_N"
	500	i = i + 1; fields(i)%vname="ntime"; fields(i)%grid="grid_scalar"
	501	i = i + 1; fields(i)%vname="Dsst"; fields(i)%grid="grid_scalar"
	502	i = i + 1; fields(i)%vname="tmask"; fields(i)%grid="grid_N_3D"
	503	i = i + 1; fields(i)%vname="umask"; fields(i)%grid="grid_N_3D"
	504	i = i + 1; fields(i)%vname="vmask"; fields(i)%grid="grid_N_3D"
	505	i = i + 1; fields(i)%vname="smask"; fields(i)%grid="grid_N_3D"
	506	i = i + 1; fields(i)%vname="gdepw_n"; fields(i)%grid="grid_N_3D"
	507	i = i + 1; fields(i)%vname="e3t_n"; fields(i)%grid="grid_N_3D"
	508	i = i + 1; fields(i)%vname="e3u_n"; fields(i)%grid="grid_N_3D"
	509	i = i + 1; fields(i)%vname="e3v_n"; fields(i)%grid="grid_N_3D"
	510	i = i + 1; fields(i)%vname="surf_ini"; fields(i)%grid="grid_N"
	511	i = i + 1; fields(i)%vname="e3t_b"; fields(i)%grid="grid_N_3D"
	512	i = i + 1; fields(i)%vname="hmxl_n"; fields(i)%grid="grid_N_3D"
	513	i = i + 1; fields(i)%vname="un_bf"; fields(i)%grid="grid_N"
	514	i = i + 1; fields(i)%vname="vn_bf"; fields(i)%grid="grid_N"
	515	i = i + 1; fields(i)%vname="hbl"; fields(i)%grid="grid_N"
	516	i = i + 1; fields(i)%vname="hbli"; fields(i)%grid="grid_N"
	517	i = i + 1; fields(i)%vname="wn"; fields(i)%grid="grid_N_3D"
[13280]	518	i = i + 1; fields(i)%vname="a_fwb_b"; fields(i)%grid="grid_scalar"
	519	i = i + 1; fields(i)%vname="a_fwb"; fields(i)%grid="grid_scalar"
[9367]	520
	521	IF( i-1 > max_rst_fields) THEN
[10425]	522	WRITE(ctmp1,*) 'E R R O R : iom_set_rst_vars SIZE of RST_FIELD array is too small'
	523	CALL ctl_stop( 'iom_set_rst_vars:', ctmp1 )
[9367]	524	ENDIF
	525	END SUBROUTINE iom_set_rst_vars
	526
	527
	528	SUBROUTINE iom_set_rstw_active(cdrst_file)
	529	!!---------------------------------------------------------------------
[9535]	530	!! * SUBROUTINE iom_set_rstw_active *
[9367]	531	!!
	532	!! ** Purpose : define file name in XIOS context for writing restart
	533	!! enable variables present in restart file for writing
	534	!!---------------------------------------------------------------------
	535	!sets enabled = .TRUE. for each field in restart file
	536	CHARACTER(len=*) :: cdrst_file
	537	#if defined key_iomput
	538	TYPE(xios_field) :: field_hdl
	539	TYPE(xios_file) :: file_hdl
	540	TYPE(xios_filegroup) :: filegroup_hdl
	541	INTEGER :: i
	542	CHARACTER(lc) :: clpath
	543
	544	!set name of the restart file and enable available fields
	545	IF(lwp) WRITE(numout,*) 'Setting restart filename (for XIOS write) to: ',cdrst_file
	546	CALL xios_get_handle("file_definition", filegroup_hdl )
	547	CALL xios_add_child(filegroup_hdl, file_hdl, 'wrestart')
	548	IF(nxioso.eq.1) THEN
	549	CALL xios_set_file_attr( "wrestart", type="one_file", enabled=.TRUE.,&
	550	mode="write", output_freq=xios_timestep)
	551	if(lwp) write(numout,*) 'OPEN ', trim(cdrst_file), ' in one_file mode'
	552	ELSE
	553	CALL xios_set_file_attr( "wrestart", type="multiple_file", enabled=.TRUE.,&
	554	mode="write", output_freq=xios_timestep)
	555	if(lwp) write(numout,*) 'OPEN ', trim(cdrst_file), ' in multiple_file mode'
	556	ENDIF
	557	CALL xios_set_file_attr( "wrestart", name=trim(cdrst_file))
	558	!define fields for restart context
	559	DO i = 1, max_rst_fields
	560	IF( rst_wfields(i)%active ) THEN
	561	CALL xios_add_child(file_hdl, field_hdl, TRIM(rst_wfields(i)%vname))
	562	SELECT CASE (TRIM(rst_wfields(i)%grid))
	563	CASE ("grid_N_3D")
	564	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(rst_wfields(i)%vname), &
	565	domain_ref="grid_N", axis_ref="nav_lev", prec = 8, operation = "instant")
	566	CASE ("grid_N")
	567	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(rst_wfields(i)%vname), &
	568	domain_ref="grid_N", prec = 8, operation = "instant")
	569	CASE ("grid_vector")
	570	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(rst_wfields(i)%vname), &
	571	axis_ref="nav_lev", prec = 8, operation = "instant")
	572	CASE ("grid_scalar")
	573	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(rst_wfields(i)%vname), &
	574	scalar_ref = "grid_scalar", prec = 8, operation = "instant")
	575	END SELECT
	576	ENDIF
	577	END DO
	578	#endif
	579	END SUBROUTINE iom_set_rstw_active
	580
[9984]	581	SUBROUTINE iom_set_rst_context(ld_rstr)
[9367]	582	!!---------------------------------------------------------------------
[9535]	583	!! * SUBROUTINE iom_set_rst_context *
[9367]	584	!!
	585	!! ** Purpose : Define domain, axis and grid for restart (read/write)
	586	!! context
	587	!!
	588	!!---------------------------------------------------------------------
[9984]	589	LOGICAL, INTENT(IN) :: ld_rstr
	590	!ld_rstr is true for restart context. There is no need to define grid for
	591	!restart read, because it's read from file
[9367]	592	#if defined key_iomput
	593	TYPE(xios_domaingroup) :: domaingroup_hdl
	594	TYPE(xios_domain) :: domain_hdl
	595	TYPE(xios_axisgroup) :: axisgroup_hdl
	596	TYPE(xios_axis) :: axis_hdl
	597	TYPE(xios_scalar) :: scalar_hdl
	598	TYPE(xios_scalargroup) :: scalargroup_hdl
	599
	600	CALL xios_get_handle("domain_definition",domaingroup_hdl)
	601	CALL xios_add_child(domaingroup_hdl, domain_hdl, "grid_N")
[9984]	602	CALL set_grid("N", glamt, gphit, .TRUE., ld_rstr)
[9367]	603
	604	CALL xios_get_handle("axis_definition",axisgroup_hdl)
	605	CALL xios_add_child(axisgroup_hdl, axis_hdl, "nav_lev")
	606	!AGRIF fails to compile when unit= is in call to xios_set_axis_attr
	607	! CALL xios_set_axis_attr( "nav_lev", long_name="Vertical levels", unit="m", positive="down")
	608	CALL xios_set_axis_attr( "nav_lev", long_name="Vertical levels in meters", positive="down")
	609	CALL iom_set_axis_attr( "nav_lev", paxis = gdept_1d )
	610
	611	CALL xios_get_handle("scalar_definition", scalargroup_hdl)
	612	CALL xios_add_child(scalargroup_hdl, scalar_hdl, "grid_scalar")
	613	#endif
	614	END SUBROUTINE iom_set_rst_context
	615
[4152]	616	SUBROUTINE iom_swap( cdname )
[1793]	617	!!---------------------------------------------------------------------
	618	!! * SUBROUTINE iom_swap *
	619	!!
	620	!! ** Purpose : swap context between different agrif grid for xmlio_server
	621	!!---------------------------------------------------------------------
[4152]	622	CHARACTER(len=*), INTENT(in) :: cdname
[1793]	623	#if defined key_iomput
[3695]	624	TYPE(xios_context) :: nemo_hdl
[1793]	625
[4152]	626	IF( TRIM(Agrif_CFixed()) == '0' ) THEN
	627	CALL xios_get_handle(TRIM(cdname),nemo_hdl)
	628	ELSE
	629	CALL xios_get_handle(TRIM(Agrif_CFixed())//"_"//TRIM(cdname),nemo_hdl)
	630	ENDIF
	631	!
	632	CALL xios_set_current_context(nemo_hdl)
[1793]	633	#endif
[4152]	634	!
[1793]	635	END SUBROUTINE iom_swap
	636
	637
[10425]	638	SUBROUTINE iom_open( cdname, kiomid, ldwrt, kdom, ldstop, ldiof, kdlev )
[544]	639	!!---------------------------------------------------------------------
	640	!! * SUBROUTINE iom_open *
	641	!!
	642	!! ** Purpose : open an input file (return 0 if not found)
	643	!!---------------------------------------------------------------------
	644	CHARACTER(len=*), INTENT(in ) :: cdname ! File name
	645	INTEGER , INTENT( out) :: kiomid ! iom identifier of the opened file
	646	LOGICAL , INTENT(in ), OPTIONAL :: ldwrt ! open in write modeb (default = .FALSE.)
	647	INTEGER , INTENT(in ), OPTIONAL :: kdom ! Type of domain to be written (default = jpdom_local_noovlap)
[679]	648	LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if open to read a non-existing file (default = .TRUE.)
[1319]	649	LOGICAL , INTENT(in ), OPTIONAL :: ldiof ! Interp On the Fly, needed for AGRIF (default = .FALSE.)
[9019]	650	INTEGER , INTENT(in ), OPTIONAL :: kdlev ! number of vertical levels
	651	!
[4148]	652	CHARACTER(LEN=256) :: clname ! the name of the file based on cdname [[+clcpu]+clcpu]
	653	CHARACTER(LEN=256) :: cltmpn ! tempory name to store clname (in writting mode)
[6140]	654	CHARACTER(LEN=10) :: clsuffix ! ".nc"
[550]	655	CHARACTER(LEN=15) :: clcpu ! the cpu number (max jpmax_digits digits)
[4148]	656	CHARACTER(LEN=256) :: clinfo ! info character
[544]	657	LOGICAL :: llok ! check the existence
[679]	658	LOGICAL :: llwrt ! local definition of ldwrt
[1200]	659	LOGICAL :: llnoov ! local definition to read overlap
[679]	660	LOGICAL :: llstop ! local definition of ldstop
[1319]	661	LOGICAL :: lliof ! local definition of ldiof
[544]	662	INTEGER :: icnt ! counter for digits in clcpu (max = jpmax_digits)
	663	INTEGER :: iln, ils ! lengths of character
	664	INTEGER :: idom ! type of domain
	665	INTEGER :: istop !
	666	INTEGER, DIMENSION(2,5) :: idompar ! domain parameters:
	667	! local number of points for x,y dimensions
	668	! position of first local point for x,y dimensions
	669	! position of last local point for x,y dimensions
	670	! start halo size for x,y dimensions
	671	! end halo size for x,y dimensions
	672	!---------------------------------------------------------------------
	673	! Initializations and control
	674	! =============
[1341]	675	kiomid = -1
[544]	676	clinfo = ' iom_open ~~~ '
	677	istop = nstop
	678	! if iom_open is called for the first time: initialize iom_file(:)%nfid to 0
	679	! (could be done when defining iom_file in f95 but not in f90)
[1441]	680	IF( Agrif_Root() ) THEN
	681	IF( iom_open_init == 0 ) THEN
	682	iom_file(:)%nfid = 0
	683	iom_open_init = 1
	684	ENDIF
[1409]	685	ENDIF
[544]	686	! do we read or write the file?
	687	IF( PRESENT(ldwrt) ) THEN ; llwrt = ldwrt
	688	ELSE ; llwrt = .FALSE.
	689	ENDIF
[679]	690	! do we call ctl_stop if we try to open a non-existing file in read mode?
	691	IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
	692	ELSE ; llstop = .TRUE.
	693	ENDIF
[1319]	694	! are we using interpolation on the fly?
	695	IF( PRESENT(ldiof) ) THEN ; lliof = ldiof
	696	ELSE ; lliof = .FALSE.
	697	ENDIF
[1200]	698	! do we read the overlap
	699	! ugly patch SM+JMM+RB to overwrite global definition in some cases
[10016]	700	llnoov = (jpni * jpnj ) == jpnij .AND. .NOT. lk_agrif
[544]	701	! create the file name by added, if needed, TRIM(Agrif_CFixed()) and TRIM(clsuffix)
	702	! =============
	703	clname = trim(cdname)
[1319]	704	IF ( .NOT. Agrif_Root() .AND. .NOT. lliof ) THEN
[11554]	705	!FUS iln = INDEX(clname,'/')
	706	iln = INDEX(clname,'/',BACK=.true.) ! FUS: to insert the nest index at the right location within the string, the last / has to be found (search from the right to left)
[1200]	707	cltmpn = clname(1:iln)
	708	clname = clname(iln+1:LEN_TRIM(clname))
	709	clname=TRIM(cltmpn)//TRIM(Agrif_CFixed())//'_'//TRIM(clname)
	710	ENDIF
[544]	711	! which suffix should we use?
[10425]	712	clsuffix = '.nc'
[544]	713	! Add the suffix if needed
	714	iln = LEN_TRIM(clname)
	715	ils = LEN_TRIM(clsuffix)
[742]	716	IF( iln <= ils .OR. INDEX( TRIM(clname), TRIM(clsuffix), back = .TRUE. ) /= iln - ils + 1 ) &
	717	& clname = TRIM(clname)//TRIM(clsuffix)
[544]	718	cltmpn = clname ! store this name
	719	! try to find if the file to be opened already exist
	720	! =============
	721	INQUIRE( FILE = clname, EXIST = llok )
	722	IF( .NOT.llok ) THEN
	723	! we try to add the cpu number to the name
[6140]	724	WRITE(clcpu,*) narea-1
	725
[544]	726	clcpu = TRIM(ADJUSTL(clcpu))
[679]	727	iln = INDEX(clname,TRIM(clsuffix), back = .TRUE.)
[544]	728	clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
	729	icnt = 0
	730	INQUIRE( FILE = clname, EXIST = llok )
	731	! we try different formats for the cpu number by adding 0
	732	DO WHILE( .NOT.llok .AND. icnt < jpmax_digits )
	733	clcpu = "0"//trim(clcpu)
	734	clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
	735	INQUIRE( FILE = clname, EXIST = llok )
	736	icnt = icnt + 1
	737	END DO
[9367]	738	ELSE
	739	lxios_sini = .TRUE.
[544]	740	ENDIF
[679]	741	IF( llwrt ) THEN
	742	! check the domain definition
	743	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	744	! idom = jpdom_local_noovlap ! default definition
[1200]	745	IF( llnoov ) THEN ; idom = jpdom_local_noovlap ! default definition
	746	ELSE ; idom = jpdom_local_full ! default definition
[679]	747	ENDIF
	748	IF( PRESENT(kdom) ) idom = kdom
	749	! create the domain informations
	750	! =============
	751	SELECT CASE (idom)
	752	CASE (jpdom_local_full)
	753	idompar(:,1) = (/ jpi , jpj /)
	754	idompar(:,2) = (/ nimpp , njmpp /)
	755	idompar(:,3) = (/ nimpp + jpi - 1 , njmpp + jpj - 1 /)
	756	idompar(:,4) = (/ nldi - 1 , nldj - 1 /)
	757	idompar(:,5) = (/ jpi - nlei , jpj - nlej /)
	758	CASE (jpdom_local_noextra)
	759	idompar(:,1) = (/ nlci , nlcj /)
	760	idompar(:,2) = (/ nimpp , njmpp /)
	761	idompar(:,3) = (/ nimpp + nlci - 1, njmpp + nlcj - 1 /)
	762	idompar(:,4) = (/ nldi - 1 , nldj - 1 /)
	763	idompar(:,5) = (/ nlci - nlei , nlcj - nlej /)
	764	CASE (jpdom_local_noovlap)
	765	idompar(:,1) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
	766	idompar(:,2) = (/ nimpp + nldi - 1, njmpp + nldj - 1 /)
	767	idompar(:,3) = (/ nimpp + nlei - 1, njmpp + nlej - 1 /)
	768	idompar(:,4) = (/ 0 , 0 /)
	769	idompar(:,5) = (/ 0 , 0 /)
	770	CASE DEFAULT
	771	CALL ctl_stop( TRIM(clinfo), 'wrong value of kdom, only jpdom_local* cases are accepted' )
	772	END SELECT
	773	ENDIF
[6140]	774	! Open the NetCDF file
[544]	775	! =============
	776	! do we have some free file identifier?
	777	IF( MINVAL(iom_file(:)%nfid) /= 0 ) &
[679]	778	& CALL ctl_stop( TRIM(clinfo), 'No more free file identifier', 'increase jpmax_files in iom_def' )
	779	! if no file was found...
	780	IF( .NOT. llok ) THEN
	781	IF( .NOT. llwrt ) THEN ! we are in read mode
	782	IF( llstop ) THEN ; CALL ctl_stop( TRIM(clinfo), 'File '//TRIM(cltmpn)//'* not found' )
	783	ELSE ; istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
	784	ENDIF
	785	ELSE ! we are in write mode so we
	786	clname = cltmpn ! get back the file name without the cpu number
	787	ENDIF
[2586]	788	ELSE
	789	IF( llwrt .AND. .NOT. ln_clobber ) THEN ! we stop as we want to write in a new file
	790	CALL ctl_stop( TRIM(clinfo), 'We want to write in a new file but '//TRIM(clname)//' already exists...' )
	791	istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
[4650]	792	ELSEIF( llwrt ) THEN ! the file exists and we are in write mode with permission to
	793	clname = cltmpn ! overwrite so get back the file name without the cpu number
[2586]	794	ENDIF
[679]	795	ENDIF
[544]	796	IF( istop == nstop ) THEN ! no error within this routine
[10425]	797	CALL iom_nf90_open( clname, kiomid, llwrt, llok, idompar, kdlev = kdlev )
[544]	798	ENDIF
	799	!
	800	END SUBROUTINE iom_open
	801
	802
	803	SUBROUTINE iom_close( kiomid )
	804	!!--------------------------------------------------------------------
	805	!! * SUBROUTINE iom_close *
	806	!!
	807	!! ** Purpose : close an input file, or all files opened by iom
	808	!!--------------------------------------------------------------------
[1131]	809	INTEGER, INTENT(inout), OPTIONAL :: kiomid ! iom identifier of the file to be closed
	810	! ! return 0 when file is properly closed
	811	! ! No argument: all files opened by iom are closed
[544]	812
	813	INTEGER :: jf ! dummy loop indices
	814	INTEGER :: i_s, i_e ! temporary integer
	815	CHARACTER(LEN=100) :: clinfo ! info character
	816	!---------------------------------------------------------------------
	817	!
[12283]	818	IF( iom_open_init == 0 ) RETURN ! avoid to use iom_file(jf)%nfid that us not yet initialized
	819	!
[544]	820	clinfo = ' iom_close ~~~ '
	821	IF( PRESENT(kiomid) ) THEN
	822	i_s = kiomid
	823	i_e = kiomid
	824	ELSE
	825	i_s = 1
	826	i_e = jpmax_files
	827	ENDIF
	828
	829	IF( i_s > 0 ) THEN
	830	DO jf = i_s, i_e
	831	IF( iom_file(jf)%nfid > 0 ) THEN
[10425]	832	CALL iom_nf90_close( jf )
[1131]	833	iom_file(jf)%nfid = 0 ! free the id
	834	IF( PRESENT(kiomid) ) kiomid = 0 ! return 0 as id to specify that the file was closed
[679]	835	IF(lwp) WRITE(numout,*) TRIM(clinfo)//' close file: '//TRIM(iom_file(jf)%name)//' ok'
[544]	836	ELSEIF( PRESENT(kiomid) ) THEN
	837	WRITE(ctmp1,*) '--->', kiomid
	838	CALL ctl_stop( TRIM(clinfo)//' Invalid file identifier', ctmp1 )
	839	ENDIF
	840	END DO
	841	ENDIF
	842	!
	843	END SUBROUTINE iom_close
	844
	845
[11536]	846	FUNCTION iom_varid ( kiomid, cdvar, kdimsz, kndims, lduld, ldstop )
[544]	847	!!-----------------------------------------------------------------------
	848	!! * FUNCTION iom_varid *
	849	!!
	850	!! ** Purpose : get the id of a variable in a file (return 0 if not found)
	851	!!-----------------------------------------------------------------------
	852	INTEGER , INTENT(in ) :: kiomid ! file Identifier
	853	CHARACTER(len=*) , INTENT(in ) :: cdvar ! name of the variable
[9540]	854	INTEGER, DIMENSION(:), INTENT( out), OPTIONAL :: kdimsz ! size of each dimension
[11536]	855	INTEGER , INTENT( out), OPTIONAL :: kndims ! number of dimensions
	856	LOGICAL , INTENT( out), OPTIONAL :: lduld ! true if the last dimension is unlimited (time)
[745]	857	LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if looking for non-existing variable (default = .TRUE.)
[544]	858	!
	859	INTEGER :: iom_varid, iiv, i_nvd
	860	LOGICAL :: ll_fnd
	861	CHARACTER(LEN=100) :: clinfo ! info character
[745]	862	LOGICAL :: llstop ! local definition of ldstop
[544]	863	!!-----------------------------------------------------------------------
	864	iom_varid = 0 ! default definition
[745]	865	! do we call ctl_stop if we look for non-existing variable?
	866	IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
	867	ELSE ; llstop = .TRUE.
	868	ENDIF
[544]	869	!
	870	IF( kiomid > 0 ) THEN
[679]	871	clinfo = 'iom_varid, file: '//trim(iom_file(kiomid)%name)//', var: '//trim(cdvar)
[544]	872	IF( iom_file(kiomid)%nfid == 0 ) THEN
	873	CALL ctl_stop( trim(clinfo), 'the file is not open' )
	874	ELSE
	875	ll_fnd = .FALSE.
	876	iiv = 0
	877	!
	878	DO WHILE ( .NOT.ll_fnd .AND. iiv < iom_file(kiomid)%nvars )
	879	iiv = iiv + 1
	880	ll_fnd = ( TRIM(cdvar) == TRIM(iom_file(kiomid)%cn_var(iiv)) )
	881	END DO
	882	!
	883	IF( .NOT.ll_fnd ) THEN
	884	iiv = iiv + 1
	885	IF( iiv <= jpmax_vars ) THEN
[11536]	886	iom_varid = iom_nf90_varid( kiomid, cdvar, iiv, kdimsz, kndims, lduld )
[544]	887	ELSE
	888	CALL ctl_stop( trim(clinfo), 'Too many variables in the file '//iom_file(kiomid)%name, &
[10425]	889	& 'increase the parameter jpmax_vars')
[544]	890	ENDIF
[745]	891	IF( llstop .AND. iom_varid == -1 ) CALL ctl_stop( TRIM(clinfo)//' not found' )
[544]	892	ELSE
	893	iom_varid = iiv
	894	IF( PRESENT(kdimsz) ) THEN
	895	i_nvd = iom_file(kiomid)%ndims(iiv)
[9540]	896	IF( i_nvd <= size(kdimsz) ) THEN
	897	kdimsz(1:i_nvd) = iom_file(kiomid)%dimsz(1:i_nvd,iiv)
[544]	898	ELSE
	899	WRITE(ctmp1,*) i_nvd, size(kdimsz)
	900	CALL ctl_stop( trim(clinfo), 'error in kdimsz size'//trim(ctmp1) )
	901	ENDIF
	902	ENDIF
[4205]	903	IF( PRESENT(kndims) ) kndims = iom_file(kiomid)%ndims(iiv)
[11536]	904	IF( PRESENT( lduld) ) lduld = iom_file(kiomid)%luld( iiv)
[544]	905	ENDIF
	906	ENDIF
	907	ENDIF
	908	!
	909	END FUNCTION iom_varid
	910
	911
	912	!!----------------------------------------------------------------------
	913	!! INTERFACE iom_get
	914	!!----------------------------------------------------------------------
[9367]	915	SUBROUTINE iom_g0d( kiomid, cdvar, pvar, ktime, ldxios )
[544]	916	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	917	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	918	REAL(wp) , INTENT( out) :: pvar ! read field
[4245]	919	INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
[9367]	920	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! use xios to read restart
[544]	921	!
[4245]	922	INTEGER :: idvar ! variable id
	923	INTEGER :: idmspc ! number of spatial dimensions
	924	INTEGER , DIMENSION(1) :: itime ! record number
	925	CHARACTER(LEN=100) :: clinfo ! info character
	926	CHARACTER(LEN=100) :: clname ! file name
	927	CHARACTER(LEN=1) :: cldmspc !
[9367]	928	LOGICAL :: llxios
[544]	929	!
[9367]	930	llxios = .FALSE.
	931	IF( PRESENT(ldxios) ) llxios = ldxios
	932
	933	IF(.NOT.llxios) THEN ! read data using default library
	934	itime = 1
	935	IF( PRESENT(ktime) ) itime = ktime
	936	!
	937	clname = iom_file(kiomid)%name
	938	clinfo = ' iom_g0d, file: '//trim(clname)//', var: '//trim(cdvar)
	939	!
	940	IF( kiomid > 0 ) THEN
	941	idvar = iom_varid( kiomid, cdvar )
	942	IF( iom_file(kiomid)%nfid > 0 .AND. idvar > 0 ) THEN
	943	idmspc = iom_file ( kiomid )%ndims( idvar )
	944	IF( iom_file(kiomid)%luld(idvar) ) idmspc = idmspc - 1
	945	WRITE(cldmspc , fmt='(i1)') idmspc
	946	IF( idmspc > 0 ) CALL ctl_stop( TRIM(clinfo), 'When reading to a 0D array, we do not accept data', &
	947	& 'with 1 or more spatial dimensions: '//cldmspc//' were found.' , &
	948	& 'Use ncwa -a to suppress the unnecessary dimensions' )
[10425]	949	CALL iom_nf90_get( kiomid, idvar, pvar, itime )
[9367]	950	ENDIF
[679]	951	ENDIF
[9367]	952	ELSE
[9535]	953	#if defined key_iomput
[9367]	954	IF(lwp) WRITE(numout,*) 'XIOS RST READ (0D): ', trim(cdvar)
	955	CALL iom_swap( TRIM(crxios_context) )
	956	CALL xios_recv_field( trim(cdvar), pvar)
	957	CALL iom_swap( TRIM(cxios_context) )
[9535]	958	#else
[10425]	959	WRITE(ctmp1,*) 'Can not use XIOS in iom_g0d, file: '//trim(clname)//', var:'//trim(cdvar)
	960	CALL ctl_stop( 'iom_g0d', ctmp1 )
[9535]	961	#endif
[679]	962	ENDIF
[550]	963	END SUBROUTINE iom_g0d
[544]	964
[9367]	965	SUBROUTINE iom_g1d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, ldxios )
[544]	966	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	967	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	968	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	969	REAL(wp) , INTENT( out), DIMENSION(:) :: pvar ! read field
	970	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	971	INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kstart ! start axis position of the reading
	972	INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kcount ! number of points in each axis
[9367]	973	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	974	!
[679]	975	IF( kiomid > 0 ) THEN
	976	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r1d=pvar, &
[9367]	977	& ktime=ktime, kstart=kstart, kcount=kcount, &
	978	& ldxios=ldxios )
[679]	979	ENDIF
[550]	980	END SUBROUTINE iom_g1d
[544]	981
[9367]	982	SUBROUTINE iom_g2d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, lrowattr, ldxios)
[544]	983	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	984	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	985	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	986	REAL(wp) , INTENT( out), DIMENSION(:,:) :: pvar ! read field
	987	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	988	INTEGER , INTENT(in ), DIMENSION(2) , OPTIONAL :: kstart ! start axis position of the reading
	989	INTEGER , INTENT(in ), DIMENSION(2) , OPTIONAL :: kcount ! number of points in each axis
[5118]	990	LOGICAL , INTENT(in ) , OPTIONAL :: lrowattr ! logical flag telling iom_get to
	991	! look for and use a file attribute
	992	! called open_ocean_jstart to set the start
	993	! value for the 2nd dimension (netcdf only)
[9367]	994	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	995	!
[679]	996	IF( kiomid > 0 ) THEN
	997	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r2d=pvar, &
[5118]	998	& ktime=ktime, kstart=kstart, kcount=kcount, &
[9367]	999	& lrowattr=lrowattr, ldxios=ldxios)
[679]	1000	ENDIF
[550]	1001	END SUBROUTINE iom_g2d
[544]	1002
[9367]	1003	SUBROUTINE iom_g3d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, lrowattr, ldxios )
[544]	1004	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1005	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	1006	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	1007	REAL(wp) , INTENT( out), DIMENSION(:,:,:) :: pvar ! read field
	1008	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	1009	INTEGER , INTENT(in ), DIMENSION(3) , OPTIONAL :: kstart ! start axis position of the reading
	1010	INTEGER , INTENT(in ), DIMENSION(3) , OPTIONAL :: kcount ! number of points in each axis
[5118]	1011	LOGICAL , INTENT(in ) , OPTIONAL :: lrowattr ! logical flag telling iom_get to
	1012	! look for and use a file attribute
	1013	! called open_ocean_jstart to set the start
	1014	! value for the 2nd dimension (netcdf only)
[9367]	1015	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	1016	!
[679]	1017	IF( kiomid > 0 ) THEN
	1018	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r3d=pvar, &
[5118]	1019	& ktime=ktime, kstart=kstart, kcount=kcount, &
[9367]	1020	& lrowattr=lrowattr, ldxios=ldxios )
[679]	1021	ENDIF
[550]	1022	END SUBROUTINE iom_g3d
[544]	1023	!!----------------------------------------------------------------------
	1024
	1025	SUBROUTINE iom_get_123d( kiomid, kdom , cdvar , &
[679]	1026	& pv_r1d, pv_r2d, pv_r3d, &
[5118]	1027	& ktime , kstart, kcount, &
[9367]	1028	& lrowattr, ldxios )
[544]	1029	!!-----------------------------------------------------------------------
	1030	!! * ROUTINE iom_get_123d *
	1031	!!
	1032	!! ** Purpose : read a 1D/2D/3D variable
	1033	!!
	1034	!! ** Method : read ONE record at each CALL
	1035	!!-----------------------------------------------------------------------
	1036	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1037	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	1038	CHARACTER(len=*) , INTENT(in ) :: cdvar ! Name of the variable
	1039	REAL(wp), DIMENSION(:) , INTENT( out), OPTIONAL :: pv_r1d ! read field (1D case)
	1040	REAL(wp), DIMENSION(:,:) , INTENT( out), OPTIONAL :: pv_r2d ! read field (2D case)
	1041	REAL(wp), DIMENSION(:,:,:) , INTENT( out), OPTIONAL :: pv_r3d ! read field (3D case)
	1042	INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
	1043	INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kstart ! start position of the reading in each axis
	1044	INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kcount ! number of points to be read in each axis
[5118]	1045	LOGICAL , INTENT(in ), OPTIONAL :: lrowattr ! logical flag telling iom_get to
[9367]	1046	! look for and use a file attribute
	1047	! called open_ocean_jstart to set the start
	1048	! value for the 2nd dimension (netcdf only)
	1049	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! use XIOS to read restart
[544]	1050	!
[9367]	1051	LOGICAL :: llxios ! local definition for XIOS read
[1200]	1052	LOGICAL :: llnoov ! local definition to read overlap
[5118]	1053	LOGICAL :: luse_jattr ! local definition to read open_ocean_jstart file attribute
	1054	INTEGER :: jstartrow ! start point for 2nd dimension optionally set by file attribute
[544]	1055	INTEGER :: jl ! loop on number of dimension
	1056	INTEGER :: idom ! type of domain
	1057	INTEGER :: idvar ! id of the variable
	1058	INTEGER :: inbdim ! number of dimensions of the variable
	1059	INTEGER :: idmspc ! number of spatial dimensions
	1060	INTEGER :: itime ! record number
	1061	INTEGER :: istop ! temporary value of nstop
[679]	1062	INTEGER :: ix1, ix2, iy1, iy2 ! subdomain indexes
	1063	INTEGER :: ji, jj ! loop counters
[5118]	1064	INTEGER :: irankpv !
[679]	1065	INTEGER :: ind1, ind2 ! substring index
[544]	1066	INTEGER, DIMENSION(jpmax_dims) :: istart ! starting point to read for each axis
	1067	INTEGER, DIMENSION(jpmax_dims) :: icnt ! number of value to read along each axis
	1068	INTEGER, DIMENSION(jpmax_dims) :: idimsz ! size of the dimensions of the variable
[679]	1069	INTEGER, DIMENSION(jpmax_dims) :: ishape ! size of the dimensions of the variable
[544]	1070	REAL(wp) :: zscf, zofs ! sacle_factor and add_offset
	1071	INTEGER :: itmp ! temporary integer
[4148]	1072	CHARACTER(LEN=256) :: clinfo ! info character
	1073	CHARACTER(LEN=256) :: clname ! file name
[679]	1074	CHARACTER(LEN=1) :: clrankpv, cldmspc !
[6140]	1075	LOGICAL :: ll_depth_spec ! T => if kstart, kcount present then only use values for 3rd spatial dimension.
[9019]	1076	INTEGER :: inlev ! number of levels for 3D data
[9367]	1077	REAL(wp) :: gma, gmi
[544]	1078	!---------------------------------------------------------------------
	1079	!
[9019]	1080	inlev = -1
	1081	IF( PRESENT(pv_r3d) ) inlev = SIZE(pv_r3d, 3)
[9367]	1082	!
	1083	llxios = .FALSE.
	1084	if(PRESENT(ldxios)) llxios = ldxios
	1085	idvar = iom_varid( kiomid, cdvar )
[544]	1086	idom = kdom
[9367]	1087	!
	1088	IF(.NOT.llxios) THEN
	1089	clname = iom_file(kiomid)%name ! esier to read
	1090	clinfo = ' iom_get_123d, file: '//trim(clname)//', var: '//trim(cdvar)
	1091	! local definition of the domain ?
	1092	! do we read the overlap
	1093	! ugly patch SM+JMM+RB to overwrite global definition in some cases
	1094	llnoov = (jpni * jpnj ) == jpnij .AND. .NOT. lk_agrif
	1095	! check kcount and kstart optionals parameters...
	1096	IF( PRESENT(kcount) .AND. (.NOT. PRESENT(kstart)) ) CALL ctl_stop(trim(clinfo), 'kcount present needs kstart present')
	1097	IF( PRESENT(kstart) .AND. (.NOT. PRESENT(kcount)) ) CALL ctl_stop(trim(clinfo), 'kstart present needs kcount present')
	1098	IF( PRESENT(kstart) .AND. idom /= jpdom_unknown .AND. idom /= jpdom_autoglo_xy ) &
	1099	& CALL ctl_stop(trim(clinfo), 'kstart present needs kdom = jpdom_unknown or kdom = jpdom_autoglo_xy')
[544]	1100
[9367]	1101	luse_jattr = .false.
	1102	IF( PRESENT(lrowattr) ) THEN
	1103	IF( lrowattr .AND. idom /= jpdom_data ) CALL ctl_stop(trim(clinfo), 'lrowattr present and true needs kdom = jpdom_data')
	1104	IF( lrowattr .AND. idom == jpdom_data ) luse_jattr = .true.
[6140]	1105	ENDIF
[679]	1106
[9367]	1107	! Search for the variable in the data base (eventually actualize data)
	1108	istop = nstop
[544]	1109	!
[9367]	1110	IF( idvar > 0 ) THEN
	1111	! to write iom_file(kiomid)%dimsz in a shorter way !
	1112	idimsz(:) = iom_file(kiomid)%dimsz(:, idvar)
	1113	inbdim = iom_file(kiomid)%ndims(idvar) ! number of dimensions in the file
	1114	idmspc = inbdim ! number of spatial dimensions in the file
	1115	IF( iom_file(kiomid)%luld(idvar) ) idmspc = inbdim - 1
	1116	IF( idmspc > 3 ) CALL ctl_stop(trim(clinfo), 'the file has more than 3 spatial dimensions this case is not coded...')
	1117	!
	1118	! update idom definition...
	1119	! Identify the domain in case of jpdom_auto(glo/dta) definition
	1120	IF( idom == jpdom_autoglo_xy ) THEN
	1121	ll_depth_spec = .TRUE.
	1122	idom = jpdom_autoglo
	1123	ELSE
	1124	ll_depth_spec = .FALSE.
	1125	ENDIF
	1126	IF( idom == jpdom_autoglo .OR. idom == jpdom_autodta ) THEN
	1127	IF( idom == jpdom_autoglo ) THEN ; idom = jpdom_global
	1128	ELSE ; idom = jpdom_data
[544]	1129	ENDIF
[9367]	1130	ind1 = INDEX( clname, '_', back = .TRUE. ) + 1
	1131	ind2 = INDEX( clname, '.', back = .TRUE. ) - 1
	1132	IF( ind2 > ind1 ) THEN ; IF( VERIFY( clname(ind1:ind2), '0123456789' ) == 0 ) idom = jpdom_local ; ENDIF
	1133	ENDIF
	1134	! Identify the domain in case of jpdom_local definition
	1135	IF( idom == jpdom_local ) THEN
	1136	IF( idimsz(1) == jpi .AND. idimsz(2) == jpj ) THEN ; idom = jpdom_local_full
	1137	ELSEIF( idimsz(1) == nlci .AND. idimsz(2) == nlcj ) THEN ; idom = jpdom_local_noextra
	1138	ELSEIF( idimsz(1) == (nlei - nldi + 1) .AND. idimsz(2) == (nlej - nldj + 1) ) THEN ; idom = jpdom_local_noovlap
	1139	ELSE ; CALL ctl_stop( trim(clinfo), 'impossible to identify the local domain' )
	1140	ENDIF
	1141	ENDIF
	1142	!
	1143	! check the consistency between input array and data rank in the file
	1144	!
	1145	! initializations
	1146	itime = 1
	1147	IF( PRESENT(ktime) ) itime = ktime
	1148	!
	1149	irankpv = 1 * COUNT( (/PRESENT(pv_r1d)/) ) + 2 * COUNT( (/PRESENT(pv_r2d)/) ) + 3 * COUNT( (/PRESENT(pv_r3d)/) )
	1150	WRITE(clrankpv, fmt='(i1)') irankpv
	1151	WRITE(cldmspc , fmt='(i1)') idmspc
	1152	!
	1153	IF( idmspc < irankpv ) THEN
	1154	CALL ctl_stop( TRIM(clinfo), 'The file has only '//cldmspc//' spatial dimension', &
	1155	& 'it is impossible to read a '//clrankpv//'D array from this file...' )
	1156	ELSEIF( idmspc == irankpv ) THEN
	1157	IF( PRESENT(pv_r1d) .AND. idom /= jpdom_unknown ) &
	1158	& CALL ctl_stop( TRIM(clinfo), 'case not coded...You must use jpdom_unknown' )
	1159	ELSEIF( idmspc > irankpv ) THEN
	1160	IF( PRESENT(pv_r2d) .AND. itime == 1 .AND. idimsz(3) == 1 .AND. idmspc == 3 ) THEN
	1161	CALL ctl_warn( trim(clinfo), '2D array but 3 spatial dimensions for the data...' , &
	1162	& 'As the size of the z dimension is 1 and as we try to read the first record, ', &
	1163	& 'we accept this case, even if there is a possible mix-up between z and time dimension' )
	1164	idmspc = idmspc - 1
	1165	ELSE
	1166	CALL ctl_stop( TRIM(clinfo), 'To keep iom lisibility, when reading a '//clrankpv//'D array,' , &
	1167	& 'we do not accept data with '//cldmspc//' spatial dimensions', &
	1168	& 'Use ncwa -a to suppress the unnecessary dimensions' )
	1169	ENDIF
	1170	ENDIF
	1171	!
	1172	! definition of istart and icnt
	1173	!
	1174	icnt (:) = 1
	1175	istart(:) = 1
	1176	istart(idmspc+1) = itime
	1177
	1178	IF( PRESENT(kstart) .AND. .NOT. ll_depth_spec ) THEN
	1179	istart(1:idmspc) = kstart(1:idmspc)
	1180	icnt (1:idmspc) = kcount(1:idmspc)
	1181	ELSE
	1182	IF(idom == jpdom_unknown ) THEN
	1183	icnt(1:idmspc) = idimsz(1:idmspc)
	1184	ELSE
	1185	IF( .NOT. PRESENT(pv_r1d) ) THEN ! not a 1D array
	1186	IF( idom == jpdom_data ) THEN
	1187	jstartrow = 1
	1188	IF( luse_jattr ) THEN
	1189	CALL iom_getatt(kiomid, 'open_ocean_jstart', jstartrow ) ! -999 is returned if the attribute is not found
	1190	jstartrow = MAX(1,jstartrow)
	1191	ENDIF
	1192	istart(1:2) = (/ mig(1), mjg(1) + jstartrow - 1 /) ! icnt(1:2) done below
	1193	ELSEIF( idom == jpdom_global ) THEN ; istart(1:2) = (/ nimpp , njmpp /) ! icnt(1:2) done below
[5118]	1194	ENDIF
[9367]	1195	! we do not read the overlap -> we start to read at nldi, nldj
[679]	1196	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1197	! IF( idom /= jpdom_local_noovlap ) istart(1:2) = istart(1:2) + (/ nldi - 1, nldj - 1 /)
[9367]	1198	IF( llnoov .AND. idom /= jpdom_local_noovlap ) istart(1:2) = istart(1:2) + (/ nldi - 1, nldj - 1 /)
[679]	1199	! we do not read the overlap and the extra-halos -> from nldi to nlei and from nldj to nlej
	1200	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1201	! icnt(1:2) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
[9367]	1202	IF( llnoov ) THEN ; icnt(1:2) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
	1203	ELSE ; icnt(1:2) = (/ nlci , nlcj /)
[544]	1204	ENDIF
[9367]	1205	IF( PRESENT(pv_r3d) ) THEN
	1206	IF( idom == jpdom_data ) THEN ; icnt(3) = inlev
	1207	ELSEIF( ll_depth_spec .AND. PRESENT(kstart) ) THEN ; istart(3) = kstart(3) ; icnt(3) = kcount(3)
	1208	ELSE ; icnt(3) = inlev
	1209	ENDIF
	1210	ENDIF
[544]	1211	ENDIF
	1212	ENDIF
[679]	1213	ENDIF
[544]	1214
[9367]	1215	! check that istart and icnt can be used with this file
	1216	!-
	1217	DO jl = 1, jpmax_dims
	1218	itmp = istart(jl)+icnt(jl)-1
	1219	IF( itmp > idimsz(jl) .AND. idimsz(jl) /= 0 ) THEN
	1220	WRITE( ctmp1, FMT="('(istart(', i1, ') + icnt(', i1, ') - 1) = ', i5)" ) jl, jl, itmp
	1221	WRITE( ctmp2, FMT="(' is larger than idimsz(', i1,') = ', i5)" ) jl, idimsz(jl)
	1222	CALL ctl_stop( trim(clinfo), 'start and count too big regarding to the size of the data, ', ctmp1, ctmp2 )
	1223	ENDIF
	1224	END DO
[544]	1225
[9367]	1226	! check that icnt matches the input array
	1227	!-
	1228	IF( idom == jpdom_unknown ) THEN
	1229	IF( irankpv == 1 ) ishape(1:1) = SHAPE(pv_r1d)
	1230	IF( irankpv == 2 ) ishape(1:2) = SHAPE(pv_r2d)
	1231	IF( irankpv == 3 ) ishape(1:3) = SHAPE(pv_r3d)
	1232	ctmp1 = 'd'
	1233	ELSE
	1234	IF( irankpv == 2 ) THEN
[679]	1235	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1236	! ishape(1:2) = SHAPE(pv_r2d(nldi:nlei,nldj:nlej )) ; ctmp1 = 'd(nldi:nlei,nldj:nlej)'
[9367]	1237	IF( llnoov ) THEN ; ishape(1:2)=SHAPE(pv_r2d(nldi:nlei,nldj:nlej )) ; ctmp1='d(nldi:nlei,nldj:nlej)'
	1238	ELSE ; ishape(1:2)=SHAPE(pv_r2d(1 :nlci,1 :nlcj )) ; ctmp1='d(1:nlci,1:nlcj)'
	1239	ENDIF
[544]	1240	ENDIF
[9367]	1241	IF( irankpv == 3 ) THEN
[679]	1242	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1243	! ishape(1:3) = SHAPE(pv_r3d(nldi:nlei,nldj:nlej,:)) ; ctmp1 = 'd(nldi:nlei,nldj:nlej,:)'
[9367]	1244	IF( llnoov ) THEN ; ishape(1:3)=SHAPE(pv_r3d(nldi:nlei,nldj:nlej,:)) ; ctmp1='d(nldi:nlei,nldj:nlej,:)'
	1245	ELSE ; ishape(1:3)=SHAPE(pv_r3d(1 :nlci,1 :nlcj,:)) ; ctmp1='d(1:nlci,1:nlcj,:)'
	1246	ENDIF
[544]	1247	ENDIF
[679]	1248	ENDIF
	1249
[9367]	1250	DO jl = 1, irankpv
	1251	WRITE( ctmp2, FMT="(', ', i1,'): ', i5,' /= icnt(', i1,'):', i5)" ) jl, ishape(jl), jl, icnt(jl)
	1252	IF( ishape(jl) /= icnt(jl) ) CALL ctl_stop( TRIM(clinfo), 'size(pv_r'//clrankpv//TRIM(ctmp1)//TRIM(ctmp2) )
	1253	END DO
[679]	1254
[9367]	1255	ENDIF
[544]	1256
[9367]	1257	! read the data
	1258	!-
	1259	IF( idvar > 0 .AND. istop == nstop ) THEN ! no additional errors until this point...
	1260	!
[679]	1261	! find the right index of the array to be read
	1262	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1263	! IF( idom /= jpdom_unknown ) THEN ; ix1 = nldi ; ix2 = nlei ; iy1 = nldj ; iy2 = nlej
	1264	! ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1265	! ENDIF
[9367]	1266	IF( llnoov ) THEN
	1267	IF( idom /= jpdom_unknown ) THEN ; ix1 = nldi ; ix2 = nlei ; iy1 = nldj ; iy2 = nlej
	1268	ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1269	ENDIF
	1270	ELSE
	1271	IF( idom /= jpdom_unknown ) THEN ; ix1 = 1 ; ix2 = nlci ; iy1 = 1 ; iy2 = nlcj
	1272	ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1273	ENDIF
[679]	1274	ENDIF
	1275
[10425]	1276	CALL iom_nf90_get( kiomid, idvar, inbdim, istart, icnt, ix1, ix2, iy1, iy2, pv_r1d, pv_r2d, pv_r3d )
[679]	1277
[9367]	1278	IF( istop == nstop ) THEN ! no additional errors until this point...
	1279	IF(lwp) WRITE(numout,"(10x,' read ',a,' (rec: ',i6,') in ',a,' ok')") TRIM(cdvar), itime, TRIM(iom_file(kiomid)%name)
	1280
	1281	!--- overlap areas and extra hallows (mpp)
	1282	IF( PRESENT(pv_r2d) .AND. idom /= jpdom_unknown ) THEN
[11536]	1283	CALL lbc_lnk( 'iom', pv_r2d,'Z', -999., kfillmode = jpfillnothing )
[9367]	1284	ELSEIF( PRESENT(pv_r3d) .AND. idom /= jpdom_unknown ) THEN
	1285	! this if could be simplified with the new lbc_lnk that works with any size of the 3rd dimension
	1286	IF( icnt(3) == inlev ) THEN
[11536]	1287	CALL lbc_lnk( 'iom', pv_r3d,'Z', -999., kfillmode = jpfillnothing )
[9367]	1288	ELSE ! put some arbitrary value (a call to lbc_lnk will be done later...)
	1289	DO jj = nlcj+1, jpj ; pv_r3d(1:nlci, jj, :) = pv_r3d(1:nlci, nlej, :) ; END DO
	1290	DO ji = nlci+1, jpi ; pv_r3d(ji , : , :) = pv_r3d(nlei , : , :) ; END DO
	1291	ENDIF
[679]	1292	ENDIF
[9367]	1293	!
	1294	ELSE
	1295	! return if istop == nstop is false
	1296	RETURN
[679]	1297	ENDIF
[9367]	1298	ELSE
	1299	! return if statment idvar > 0 .AND. istop == nstop is false
	1300	RETURN
	1301	ENDIF
	1302	!
	1303	ELSE ! read using XIOS. Only if KEY_IOMPUT is defined
	1304	#if defined key_iomput
	1305	!would be good to be able to check which context is active and swap only if current is not restart
	1306	CALL iom_swap( TRIM(crxios_context) )
	1307	IF( PRESENT(pv_r3d) ) THEN
[9535]	1308	pv_r3d(:, :, :) = 0.
[9367]	1309	if(lwp) write(numout,*) 'XIOS RST READ (3D): ',trim(cdvar)
	1310	CALL xios_recv_field( trim(cdvar), pv_r3d)
	1311	IF(idom /= jpdom_unknown ) then
[11536]	1312	CALL lbc_lnk( 'iom', pv_r3d,'Z', -999., kfillmode = jpfillnothing)
[679]	1313	ENDIF
[9367]	1314	ELSEIF( PRESENT(pv_r2d) ) THEN
[9535]	1315	pv_r2d(:, :) = 0.
[9367]	1316	if(lwp) write(numout,*) 'XIOS RST READ (2D): ', trim(cdvar)
	1317	CALL xios_recv_field( trim(cdvar), pv_r2d)
	1318	IF(idom /= jpdom_unknown ) THEN
[11536]	1319	CALL lbc_lnk('iom', pv_r2d,'Z',-999., kfillmode = jpfillnothing)
[9367]	1320	ENDIF
	1321	ELSEIF( PRESENT(pv_r1d) ) THEN
[9535]	1322	pv_r1d(:) = 0.
[9367]	1323	if(lwp) write(numout,*) 'XIOS RST READ (1D): ', trim(cdvar)
	1324	CALL xios_recv_field( trim(cdvar), pv_r1d)
[544]	1325	ENDIF
[9367]	1326	CALL iom_swap( TRIM(cxios_context) )
	1327	#else
	1328	istop = istop + 1
	1329	clinfo = 'Can not use XIOS in iom_get_123d, file: '//trim(clname)//', var:'//trim(cdvar)
	1330	#endif
[544]	1331	ENDIF
[9367]	1332	!some final adjustments
	1333	! C1D case : always call lbc_lnk to replicate the central value over the whole 3X3 domain
[10425]	1334	IF( lk_c1d .AND. PRESENT(pv_r2d) ) CALL lbc_lnk( 'iom', pv_r2d,'Z',1. )
	1335	IF( lk_c1d .AND. PRESENT(pv_r3d) ) CALL lbc_lnk( 'iom', pv_r3d,'Z',1. )
[9367]	1336
	1337	!--- Apply scale_factor and offset
	1338	zscf = iom_file(kiomid)%scf(idvar) ! scale factor
	1339	zofs = iom_file(kiomid)%ofs(idvar) ! offset
	1340	IF( PRESENT(pv_r1d) ) THEN
	1341	IF( zscf /= 1. ) pv_r1d(:) = pv_r1d(:) * zscf
	1342	IF( zofs /= 0. ) pv_r1d(:) = pv_r1d(:) + zofs
	1343	ELSEIF( PRESENT(pv_r2d) ) THEN
	1344	IF( zscf /= 1.) pv_r2d(:,:) = pv_r2d(:,:) * zscf
	1345	IF( zofs /= 0.) pv_r2d(:,:) = pv_r2d(:,:) + zofs
	1346	ELSEIF( PRESENT(pv_r3d) ) THEN
	1347	IF( zscf /= 1.) pv_r3d(:,:,:) = pv_r3d(:,:,:) * zscf
	1348	IF( zofs /= 0.) pv_r3d(:,:,:) = pv_r3d(:,:,:) + zofs
	1349	ENDIF
[544]	1350	!
	1351	END SUBROUTINE iom_get_123d
	1352
[12276]	1353	SUBROUTINE iom_get_var( cdname, z2d)
	1354	CHARACTER(LEN=*), INTENT(in ) :: cdname
	1355	REAL(wp), DIMENSION(jpi,jpj) :: z2d
	1356	#if defined key_iomput
	1357	IF( xios_field_is_active( cdname, at_current_timestep_arg = .TRUE. ) ) THEN
	1358	z2d(:,:) = 0._wp
	1359	CALL xios_recv_field( cdname, z2d)
	1360	ENDIF
	1361	#else
	1362	IF( .FALSE. ) WRITE(numout,*) cdname, z2d ! useless test to avoid compilation warnings
	1363	#endif
	1364	END SUBROUTINE iom_get_var
[544]	1365
[12276]	1366
[10522]	1367	FUNCTION iom_getszuld ( kiomid )
	1368	!!-----------------------------------------------------------------------
	1369	!! * FUNCTION iom_getszuld *
[544]	1370	!!
[10522]	1371	!! ** Purpose : get the size of the unlimited dimension in a file
	1372	!! (return -1 if not found)
	1373	!!-----------------------------------------------------------------------
	1374	INTEGER, INTENT(in ) :: kiomid ! file Identifier
[544]	1375	!
[10522]	1376	INTEGER :: iom_getszuld
	1377	!!-----------------------------------------------------------------------
	1378	iom_getszuld = -1
[679]	1379	IF( kiomid > 0 ) THEN
[10523]	1380	IF( iom_file(kiomid)%iduld > 0 ) iom_getszuld = iom_file(kiomid)%lenuld
[544]	1381	ENDIF
[10522]	1382	END FUNCTION iom_getszuld
	1383
[544]	1384
	1385	!!----------------------------------------------------------------------
[10425]	1386	!! INTERFACE iom_chkatt
[2528]	1387	!!----------------------------------------------------------------------
[10425]	1388	SUBROUTINE iom_chkatt( kiomid, cdatt, llok, ksize, cdvar )
[2528]	1389	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1390	CHARACTER(len=*), INTENT(in ) :: cdatt ! Name of the attribute
[10425]	1391	LOGICAL , INTENT( out) :: llok ! Error code
	1392	INTEGER , INTENT( out), OPTIONAL :: ksize ! Size of the attribute array
[7646]	1393	CHARACTER(len=*), INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[2528]	1394	!
	1395	IF( kiomid > 0 ) THEN
[10425]	1396	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_chkatt( kiomid, cdatt, llok, ksize=ksize, cdvar=cdvar )
[2528]	1397	ENDIF
[10425]	1398	!
	1399	END SUBROUTINE iom_chkatt
	1400
	1401	!!----------------------------------------------------------------------
	1402	!! INTERFACE iom_getatt
	1403	!!----------------------------------------------------------------------
	1404	SUBROUTINE iom_g0d_iatt( kiomid, cdatt, katt0d, cdvar )
	1405	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1406	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1407	INTEGER , INTENT( out) :: katt0d ! read field
	1408	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1409	!
	1410	IF( kiomid > 0 ) THEN
	1411	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, katt0d = katt0d, cdvar=cdvar )
	1412	ENDIF
[7646]	1413	END SUBROUTINE iom_g0d_iatt
[2528]	1414
[10425]	1415	SUBROUTINE iom_g1d_iatt( kiomid, cdatt, katt1d, cdvar )
	1416	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1417	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1418	INTEGER, DIMENSION(:) , INTENT( out) :: katt1d ! read field
	1419	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1420	!
	1421	IF( kiomid > 0 ) THEN
[10425]	1422	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, katt1d = katt1d, cdvar=cdvar )
[7646]	1423	ENDIF
[10425]	1424	END SUBROUTINE iom_g1d_iatt
	1425
	1426	SUBROUTINE iom_g0d_ratt( kiomid, cdatt, patt0d, cdvar )
	1427	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1428	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1429	REAL(wp) , INTENT( out) :: patt0d ! read field
	1430	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1431	!
	1432	IF( kiomid > 0 ) THEN
	1433	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, patt0d = patt0d, cdvar=cdvar )
	1434	ENDIF
[7646]	1435	END SUBROUTINE iom_g0d_ratt
[2528]	1436
[10425]	1437	SUBROUTINE iom_g1d_ratt( kiomid, cdatt, patt1d, cdvar )
	1438	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1439	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1440	REAL(wp), DIMENSION(:), INTENT( out) :: patt1d ! read field
	1441	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1442	!
	1443	IF( kiomid > 0 ) THEN
[10425]	1444	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, patt1d = patt1d, cdvar=cdvar )
[7646]	1445	ENDIF
[10425]	1446	END SUBROUTINE iom_g1d_ratt
	1447
	1448	SUBROUTINE iom_g0d_catt( kiomid, cdatt, cdatt0d, cdvar )
	1449	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1450	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1451	CHARACTER(len=*) , INTENT( out) :: cdatt0d ! read field
	1452	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1453	!
	1454	IF( kiomid > 0 ) THEN
	1455	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, cdatt0d = cdatt0d, cdvar=cdvar )
	1456	ENDIF
[7646]	1457	END SUBROUTINE iom_g0d_catt
	1458
[10425]	1459
[2528]	1460	!!----------------------------------------------------------------------
[7646]	1461	!! INTERFACE iom_putatt
	1462	!!----------------------------------------------------------------------
[10425]	1463	SUBROUTINE iom_p0d_iatt( kiomid, cdatt, katt0d, cdvar )
	1464	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1465	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1466	INTEGER , INTENT(in ) :: katt0d ! written field
	1467	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1468	!
	1469	IF( kiomid > 0 ) THEN
[10425]	1470	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, katt0d = katt0d, cdvar=cdvar )
[7646]	1471	ENDIF
	1472	END SUBROUTINE iom_p0d_iatt
	1473
[10425]	1474	SUBROUTINE iom_p1d_iatt( kiomid, cdatt, katt1d, cdvar )
	1475	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1476	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1477	INTEGER, DIMENSION(:) , INTENT(in ) :: katt1d ! written field
	1478	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1479	!
	1480	IF( kiomid > 0 ) THEN
[10425]	1481	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, katt1d = katt1d, cdvar=cdvar )
[7646]	1482	ENDIF
[10425]	1483	END SUBROUTINE iom_p1d_iatt
	1484
	1485	SUBROUTINE iom_p0d_ratt( kiomid, cdatt, patt0d, cdvar )
	1486	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1487	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1488	REAL(wp) , INTENT(in ) :: patt0d ! written field
	1489	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1490	!
	1491	IF( kiomid > 0 ) THEN
	1492	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, patt0d = patt0d, cdvar=cdvar )
	1493	ENDIF
[7646]	1494	END SUBROUTINE iom_p0d_ratt
	1495
[10425]	1496	SUBROUTINE iom_p1d_ratt( kiomid, cdatt, patt1d, cdvar )
	1497	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1498	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1499	REAL(wp), DIMENSION(:), INTENT(in ) :: patt1d ! written field
	1500	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1501	!
	1502	IF( kiomid > 0 ) THEN
[10425]	1503	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, patt1d = patt1d, cdvar=cdvar )
[7646]	1504	ENDIF
[10425]	1505	END SUBROUTINE iom_p1d_ratt
	1506
	1507	SUBROUTINE iom_p0d_catt( kiomid, cdatt, cdatt0d, cdvar )
	1508	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1509	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1510	CHARACTER(len=*) , INTENT(in ) :: cdatt0d ! written field
	1511	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1512	!
	1513	IF( kiomid > 0 ) THEN
	1514	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, cdatt0d = cdatt0d, cdvar=cdvar )
	1515	ENDIF
[7646]	1516	END SUBROUTINE iom_p0d_catt
	1517
[10425]	1518
[7646]	1519	!!----------------------------------------------------------------------
[544]	1520	!! INTERFACE iom_rstput
	1521	!!----------------------------------------------------------------------
[9367]	1522	SUBROUTINE iom_rp0d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1523	INTEGER , INTENT(in) :: kt ! ocean time-step
	1524	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1525	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1526	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[556]	1527	REAL(wp) , INTENT(in) :: pvar ! written field
[544]	1528	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1529	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1530	LOGICAL :: llx ! local xios write flag
[544]	1531	INTEGER :: ivid ! variable id
[14643]	1532
	1533	IF (ln_timing) CALL timing_start('iom_rst_put')
[9367]	1534
	1535	llx = .FALSE.
	1536	IF(PRESENT(ldxios)) llx = ldxios
	1537	IF( llx ) THEN
	1538	#ifdef key_iomput
	1539	IF( kt == kwrite ) THEN
	1540	IF(lwp) write(numout,*) 'RESTART: write (XIOS 0D) ',trim(cdvar)
	1541	CALL xios_send_field(trim(cdvar), pvar)
	1542	ENDIF
	1543	#endif
	1544	ELSE
	1545	IF( kiomid > 0 ) THEN
	1546	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1547	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1548	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r0d = pvar )
[9367]	1549	ENDIF
[679]	1550	ENDIF
	1551	ENDIF
[14643]	1552	IF (ln_timing) CALL timing_stop('iom_rst_put')
[550]	1553	END SUBROUTINE iom_rp0d
[544]	1554
[9367]	1555	SUBROUTINE iom_rp1d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1556	INTEGER , INTENT(in) :: kt ! ocean time-step
	1557	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1558	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1559	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1560	REAL(wp) , INTENT(in), DIMENSION( :) :: pvar ! written field
[544]	1561	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1562	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1563	LOGICAL :: llx ! local xios write flag
[544]	1564	INTEGER :: ivid ! variable id
[9367]	1565
[14643]	1566	IF (ln_timing) CALL timing_start('iom_rst_put')
[9367]	1567	llx = .FALSE.
	1568	IF(PRESENT(ldxios)) llx = ldxios
	1569	IF( llx ) THEN
	1570	#ifdef key_iomput
	1571	IF( kt == kwrite ) THEN
	1572	IF(lwp) write(numout,*) 'RESTART: write (XIOS 1D) ',trim(cdvar)
	1573	CALL xios_send_field(trim(cdvar), pvar)
	1574	ENDIF
	1575	#endif
	1576	ELSE
	1577	IF( kiomid > 0 ) THEN
	1578	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1579	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1580	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r1d = pvar )
[9367]	1581	ENDIF
[679]	1582	ENDIF
	1583	ENDIF
[14643]	1584	IF (ln_timing) CALL timing_stop('iom_rst_put')
[550]	1585	END SUBROUTINE iom_rp1d
[544]	1586
[9367]	1587	SUBROUTINE iom_rp2d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1588	INTEGER , INTENT(in) :: kt ! ocean time-step
	1589	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1590	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1591	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1592	REAL(wp) , INTENT(in), DIMENSION(:, : ) :: pvar ! written field
[544]	1593	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1594	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1595	LOGICAL :: llx
[544]	1596	INTEGER :: ivid ! variable id
[9367]	1597
[14643]	1598	IF (ln_timing) CALL timing_start('iom_rst_put')
[9367]	1599	llx = .FALSE.
	1600	IF(PRESENT(ldxios)) llx = ldxios
	1601	IF( llx ) THEN
	1602	#ifdef key_iomput
	1603	IF( kt == kwrite ) THEN
	1604	IF(lwp) write(numout,*) 'RESTART: write (XIOS 2D) ',trim(cdvar)
	1605	CALL xios_send_field(trim(cdvar), pvar)
	1606	ENDIF
	1607	#endif
	1608	ELSE
	1609	IF( kiomid > 0 ) THEN
	1610	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1611	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1612	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r2d = pvar )
[9367]	1613	ENDIF
[679]	1614	ENDIF
	1615	ENDIF
[14643]	1616	IF (ln_timing) CALL timing_stop('iom_rst_put')
[550]	1617	END SUBROUTINE iom_rp2d
[544]	1618
[9367]	1619	SUBROUTINE iom_rp3d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1620	INTEGER , INTENT(in) :: kt ! ocean time-step
	1621	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1622	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1623	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1624	REAL(wp) , INTENT(in), DIMENSION(:,:,:) :: pvar ! written field
[544]	1625	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1626	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1627	LOGICAL :: llx ! local xios write flag
[544]	1628	INTEGER :: ivid ! variable id
[9367]	1629
[14643]	1630	IF (ln_timing) CALL timing_start('iom_rst_put')
[9367]	1631	llx = .FALSE.
	1632	IF(PRESENT(ldxios)) llx = ldxios
	1633	IF( llx ) THEN
	1634	#ifdef key_iomput
	1635	IF( kt == kwrite ) THEN
	1636	IF(lwp) write(numout,*) 'RESTART: write (XIOS 3D) ',trim(cdvar)
	1637	CALL xios_send_field(trim(cdvar), pvar)
	1638	ENDIF
	1639	#endif
	1640	ELSE
	1641	IF( kiomid > 0 ) THEN
	1642	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1643	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1644	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r3d = pvar )
[9367]	1645	ENDIF
[679]	1646	ENDIF
	1647	ENDIF
[14643]	1648	IF (ln_timing) CALL timing_stop('iom_rst_put')
[550]	1649	END SUBROUTINE iom_rp3d
[1359]	1650
	1651
[10425]	1652	SUBROUTINE iom_delay_rst( cdaction, cdcpnt, kncid )
	1653	!!---------------------------------------------------------------------
	1654	!! Routine iom_delay_rst: used read/write restart related to mpp_delay
	1655	!!
	1656	!!---------------------------------------------------------------------
	1657	CHARACTER(len=*), INTENT(in ) :: cdaction !
	1658	CHARACTER(len=*), INTENT(in ) :: cdcpnt
	1659	INTEGER , INTENT(in ) :: kncid
	1660	!
	1661	INTEGER :: ji
	1662	INTEGER :: indim
	1663	LOGICAL :: llattexist
	1664	REAL(wp), ALLOCATABLE, DIMENSION(:) :: zreal1d
	1665	!!---------------------------------------------------------------------
	1666	!
	1667	! ===================================
	1668	IF( TRIM(cdaction) == 'READ' ) THEN ! read restart related to mpp_delay !
	1669	! ===================================
	1670	DO ji = 1, nbdelay
	1671	IF ( c_delaycpnt(ji) == cdcpnt ) THEN
	1672	CALL iom_chkatt( kncid, 'DELAY_'//c_delaylist(ji), llattexist, indim )
	1673	IF( llattexist ) THEN
	1674	ALLOCATE( todelay(ji)%z1d(indim) )
	1675	CALL iom_getatt( kncid, 'DELAY_'//c_delaylist(ji), todelay(ji)%z1d(:) )
	1676	ndelayid(ji) = 0 ! set to 0 to specify that the value was read in the restart
	1677	ENDIF
	1678	ENDIF
	1679	END DO
	1680	! ====================================
	1681	ELSE ! write restart related to mpp_delay !
	1682	! ====================================
	1683	DO ji = 1, nbdelay ! save only ocean delayed global communication variables
	1684	IF ( c_delaycpnt(ji) == cdcpnt ) THEN
	1685	IF( ASSOCIATED(todelay(ji)%z1d) ) THEN
	1686	CALL mpp_delay_rcv(ji) ! make sure %z1d is received
	1687	CALL iom_putatt( kncid, 'DELAY_'//c_delaylist(ji), todelay(ji)%z1d(:) )
	1688	ENDIF
	1689	ENDIF
	1690	END DO
	1691	!
	1692	ENDIF
	1693
	1694	END SUBROUTINE iom_delay_rst
	1695
	1696
	1697
[544]	1698	!!----------------------------------------------------------------------
[1457]	1699	!! INTERFACE iom_put
[1359]	1700	!!----------------------------------------------------------------------
[1738]	1701	SUBROUTINE iom_p0d( cdname, pfield0d )
	1702	CHARACTER(LEN=*), INTENT(in) :: cdname
	1703	REAL(wp) , INTENT(in) :: pfield0d
[11536]	1704	!! REAL(wp) , DIMENSION(jpi,jpj) :: zz ! masson
[1738]	1705	#if defined key_iomput
[11536]	1706	!!clem zz(:,:)=pfield0d
	1707	!!clem CALL xios_send_field(cdname, zz)
	1708	CALL xios_send_field(cdname, (/pfield0d/))
[1738]	1709	#else
	1710	IF( .FALSE. ) WRITE(numout,*) cdname, pfield0d ! useless test to avoid compilation warnings
	1711	#endif
	1712	END SUBROUTINE iom_p0d
	1713
[3294]	1714	SUBROUTINE iom_p1d( cdname, pfield1d )
	1715	CHARACTER(LEN=*) , INTENT(in) :: cdname
	1716	REAL(wp), DIMENSION(:), INTENT(in) :: pfield1d
	1717	#if defined key_iomput
[3695]	1718	CALL xios_send_field( cdname, RESHAPE( (/pfield1d/), (/1,1,SIZE(pfield1d)/) ) )
[3294]	1719	#else
	1720	IF( .FALSE. ) WRITE(numout,*) cdname, pfield1d ! useless test to avoid compilation warnings
	1721	#endif
	1722	END SUBROUTINE iom_p1d
	1723
[1359]	1724	SUBROUTINE iom_p2d( cdname, pfield2d )
	1725	CHARACTER(LEN=*) , INTENT(in) :: cdname
[2715]	1726	REAL(wp), DIMENSION(:,:), INTENT(in) :: pfield2d
[1412]	1727	#if defined key_iomput
[3695]	1728	CALL xios_send_field(cdname, pfield2d)
[1520]	1729	#else
	1730	IF( .FALSE. ) WRITE(numout,*) cdname, pfield2d ! useless test to avoid compilation warnings
[1359]	1731	#endif
	1732	END SUBROUTINE iom_p2d
[544]	1733
[1359]	1734	SUBROUTINE iom_p3d( cdname, pfield3d )
	1735	CHARACTER(LEN=*) , INTENT(in) :: cdname
[2715]	1736	REAL(wp), DIMENSION(:,:,:), INTENT(in) :: pfield3d
[1412]	1737	#if defined key_iomput
[9019]	1738	CALL xios_send_field( cdname, pfield3d )
[1520]	1739	#else
	1740	IF( .FALSE. ) WRITE(numout,*) cdname, pfield3d ! useless test to avoid compilation warnings
[1359]	1741	#endif
	1742	END SUBROUTINE iom_p3d
[544]	1743
[12276]	1744	SUBROUTINE iom_p4d( cdname, pfield4d )
	1745	CHARACTER(LEN=*) , INTENT(in) :: cdname
	1746	REAL(wp), DIMENSION(:,:,:,:), INTENT(in) :: pfield4d
[1412]	1747	#if defined key_iomput
[12276]	1748	CALL xios_send_field(cdname, pfield4d)
	1749	#else
	1750	IF( .FALSE. ) WRITE(numout,*) cdname, pfield4d ! useless test to avoid compilation warnings
	1751	#endif
	1752	END SUBROUTINE iom_p4d
	1753
	1754
	1755	#if defined key_iomput
[9019]	1756	!!----------------------------------------------------------------------
[9802]	1757	!! 'key_iomput' XIOS interface
[9019]	1758	!!----------------------------------------------------------------------
[1359]	1759
[9930]	1760	SUBROUTINE iom_set_domain_attr( cdid, ni_glo, nj_glo, ibegin, jbegin, ni, nj, &
[5363]	1761	& data_dim, data_ibegin, data_ni, data_jbegin, data_nj, lonvalue, latvalue, mask, &
[5415]	1762	& nvertex, bounds_lon, bounds_lat, area )
[9019]	1763	!!----------------------------------------------------------------------
	1764	!!----------------------------------------------------------------------
	1765	CHARACTER(LEN=*) , INTENT(in) :: cdid
	1766	INTEGER , OPTIONAL, INTENT(in) :: ni_glo, nj_glo, ibegin, jbegin, ni, nj
	1767	INTEGER , OPTIONAL, INTENT(in) :: data_dim, data_ibegin, data_ni, data_jbegin, data_nj
[9930]	1768	INTEGER , OPTIONAL, INTENT(in) :: nvertex
[9019]	1769	REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: lonvalue, latvalue
	1770	REAL(wp), DIMENSION(:,:), OPTIONAL, INTENT(in) :: bounds_lon, bounds_lat, area
	1771	LOGICAL , DIMENSION(:) , OPTIONAL, INTENT(in) :: mask
	1772	!!----------------------------------------------------------------------
	1773	!
	1774	IF( xios_is_valid_domain (cdid) ) THEN
[4148]	1775	CALL xios_set_domain_attr ( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
	1776	& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
[7646]	1777	& lonvalue_1D=lonvalue, latvalue_1D=latvalue, mask_1D=mask, nvertex=nvertex, bounds_lon_1D=bounds_lon, &
	1778	& bounds_lat_1D=bounds_lat, area=area, type='curvilinear')
[9367]	1779	ENDIF
[9019]	1780	IF( xios_is_valid_domaingroup(cdid) ) THEN
[4148]	1781	CALL xios_set_domaingroup_attr( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
	1782	& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
[7646]	1783	& lonvalue_1D=lonvalue, latvalue_1D=latvalue, mask_1D=mask, nvertex=nvertex, bounds_lon_1D=bounds_lon, &
	1784	& bounds_lat_1D=bounds_lat, area=area, type='curvilinear' )
[3695]	1785	ENDIF
[9019]	1786	!
[4148]	1787	CALL xios_solve_inheritance()
[9019]	1788	!
[3695]	1789	END SUBROUTINE iom_set_domain_attr
	1790
	1791
[9019]	1792	SUBROUTINE iom_set_zoom_domain_attr( cdid, ibegin, jbegin, ni, nj )
	1793	!!----------------------------------------------------------------------
	1794	!!----------------------------------------------------------------------
[9930]	1795	CHARACTER(LEN=*), INTENT(in) :: cdid
	1796	INTEGER , INTENT(in) :: ibegin, jbegin, ni, nj
	1797	!
	1798	TYPE(xios_gridgroup) :: gridgroup_hdl
	1799	TYPE(xios_grid) :: grid_hdl
	1800	TYPE(xios_domain) :: domain_hdl
	1801	TYPE(xios_axis) :: axis_hdl
	1802	CHARACTER(LEN=64) :: cldomrefid ! domain_ref name
	1803	CHARACTER(len=1) :: cl1 ! last character of this name
[9019]	1804	!!----------------------------------------------------------------------
[9930]	1805	!
	1806	IF( xios_is_valid_zoom_domain(cdid) ) THEN
	1807	! define the zoom_domain attributs
	1808	CALL xios_set_zoom_domain_attr( cdid, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj )
	1809	! define a new 2D grid with this new domain
	1810	CALL xios_get_handle("grid_definition", gridgroup_hdl )
	1811	CALL xios_add_child(gridgroup_hdl, grid_hdl, TRIM(cdid)//'_2D' ) ! add a new 2D grid to grid_definition
	1812	CALL xios_add_child(grid_hdl, domain_hdl, TRIM(cdid) ) ! add its domain
	1813	! define a new 3D grid with this new domain
	1814	CALL xios_add_child(gridgroup_hdl, grid_hdl, TRIM(cdid)//'_3D' ) ! add a new 3D grid to grid_definition
	1815	CALL xios_add_child(grid_hdl, domain_hdl, TRIM(cdid) ) ! add its domain
	1816	! vertical axis
	1817	cl1 = cdid(LEN_TRIM(cdid):) ! last letter of cdid
	1818	cl1 = CHAR(ICHAR(cl1)+32) ! from upper to lower case
	1819	CALL xios_add_child(grid_hdl, axis_hdl, 'depth'//cl1) ! add its axis
	1820	ENDIF
	1821	!
[7646]	1822	END SUBROUTINE iom_set_zoom_domain_attr
	1823
	1824
[5415]	1825	SUBROUTINE iom_set_axis_attr( cdid, paxis, bounds )
[9019]	1826	!!----------------------------------------------------------------------
	1827	!!----------------------------------------------------------------------
[4148]	1828	CHARACTER(LEN=*) , INTENT(in) :: cdid
[5415]	1829	REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: paxis
	1830	REAL(wp), DIMENSION(:,:), OPTIONAL, INTENT(in) :: bounds
[9019]	1831	!!----------------------------------------------------------------------
	1832	IF( PRESENT(paxis) ) THEN
	1833	IF( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, n_glo=SIZE(paxis), value=paxis )
	1834	IF( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, n_glo=SIZE(paxis), value=paxis )
[5415]	1835	ENDIF
[9019]	1836	IF( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, bounds=bounds )
	1837	IF( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, bounds=bounds )
[4148]	1838	CALL xios_solve_inheritance()
[3737]	1839	END SUBROUTINE iom_set_axis_attr
	1840
	1841
[4148]	1842	SUBROUTINE iom_set_field_attr( cdid, freq_op, freq_offset )
[9019]	1843	!!----------------------------------------------------------------------
	1844	!!----------------------------------------------------------------------
	1845	CHARACTER(LEN=*) , INTENT(in) :: cdid
	1846	TYPE(xios_duration), OPTIONAL, INTENT(in) :: freq_op
	1847	TYPE(xios_duration), OPTIONAL, INTENT(in) :: freq_offset
	1848	!!----------------------------------------------------------------------
	1849	IF( xios_is_valid_field (cdid) ) CALL xios_set_field_attr ( cdid, freq_op=freq_op, freq_offset=freq_offset )
	1850	IF( xios_is_valid_fieldgroup(cdid) ) CALL xios_set_fieldgroup_attr( cdid, freq_op=freq_op, freq_offset=freq_offset )
[4148]	1851	CALL xios_solve_inheritance()
[3695]	1852	END SUBROUTINE iom_set_field_attr
	1853
	1854
[4148]	1855	SUBROUTINE iom_set_file_attr( cdid, name, name_suffix )
[9019]	1856	!!----------------------------------------------------------------------
	1857	!!----------------------------------------------------------------------
[4148]	1858	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3695]	1859	CHARACTER(LEN=*),OPTIONAL , INTENT(in) :: name, name_suffix
[9019]	1860	!!----------------------------------------------------------------------
	1861	IF( xios_is_valid_file (cdid) ) CALL xios_set_file_attr ( cdid, name=name, name_suffix=name_suffix )
	1862	IF( xios_is_valid_filegroup(cdid) ) CALL xios_set_filegroup_attr( cdid, name=name, name_suffix=name_suffix )
[4148]	1863	CALL xios_solve_inheritance()
[3771]	1864	END SUBROUTINE iom_set_file_attr
[3695]	1865
	1866
[4148]	1867	SUBROUTINE iom_get_file_attr( cdid, name, name_suffix, output_freq )
[9019]	1868	!!----------------------------------------------------------------------
	1869	!!----------------------------------------------------------------------
[4148]	1870	CHARACTER(LEN=*) , INTENT(in ) :: cdid
[7646]	1871	CHARACTER(LEN=*),OPTIONAL , INTENT(out) :: name, name_suffix
	1872	TYPE(xios_duration), OPTIONAL , INTENT(out) :: output_freq
[4148]	1873	LOGICAL :: llexist1,llexist2,llexist3
	1874	!---------------------------------------------------------------------
	1875	IF( PRESENT( name ) ) name = '' ! default values
	1876	IF( PRESENT( name_suffix ) ) name_suffix = ''
[7646]	1877	IF( PRESENT( output_freq ) ) output_freq = xios_duration(0,0,0,0,0,0)
[9019]	1878	IF( xios_is_valid_file (cdid) ) THEN
[4148]	1879	CALL xios_solve_inheritance()
	1880	CALL xios_is_defined_file_attr ( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
	1881	IF(llexist1) CALL xios_get_file_attr ( cdid, name = name )
	1882	IF(llexist2) CALL xios_get_file_attr ( cdid, name_suffix = name_suffix )
	1883	IF(llexist3) CALL xios_get_file_attr ( cdid, output_freq = output_freq )
	1884	ENDIF
[9019]	1885	IF( xios_is_valid_filegroup(cdid) ) THEN
[4148]	1886	CALL xios_solve_inheritance()
	1887	CALL xios_is_defined_filegroup_attr( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
	1888	IF(llexist1) CALL xios_get_filegroup_attr( cdid, name = name )
	1889	IF(llexist2) CALL xios_get_filegroup_attr( cdid, name_suffix = name_suffix )
	1890	IF(llexist3) CALL xios_get_filegroup_attr( cdid, output_freq = output_freq )
	1891	ENDIF
	1892	END SUBROUTINE iom_get_file_attr
	1893
	1894
	1895	SUBROUTINE iom_set_grid_attr( cdid, mask )
[9019]	1896	!!----------------------------------------------------------------------
	1897	!!----------------------------------------------------------------------
[4148]	1898	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3771]	1899	LOGICAL, DIMENSION(:,:,:), OPTIONAL, INTENT(in) :: mask
[9019]	1900	!!----------------------------------------------------------------------
	1901	IF( xios_is_valid_grid (cdid) ) CALL xios_set_grid_attr ( cdid, mask_3D=mask )
	1902	IF( xios_is_valid_gridgroup(cdid) ) CALL xios_set_gridgroup_attr( cdid, mask_3D=mask )
[4148]	1903	CALL xios_solve_inheritance()
[3771]	1904	END SUBROUTINE iom_set_grid_attr
[3695]	1905
[4152]	1906	SUBROUTINE iom_setkt( kt, cdname )
[9019]	1907	!!----------------------------------------------------------------------
	1908	!!----------------------------------------------------------------------
[4152]	1909	INTEGER , INTENT(in) :: kt
	1910	CHARACTER(LEN=*), INTENT(in) :: cdname
[9019]	1911	!!----------------------------------------------------------------------
[4152]	1912	CALL iom_swap( cdname ) ! swap to cdname context
	1913	CALL xios_update_calendar(kt)
[9019]	1914	IF( cdname /= TRIM(cxios_context) ) CALL iom_swap( TRIM(cxios_context) ) ! return back to nemo context
[4152]	1915	END SUBROUTINE iom_setkt
[3695]	1916
[4152]	1917	SUBROUTINE iom_context_finalize( cdname )
[9019]	1918	!!----------------------------------------------------------------------
	1919	!!----------------------------------------------------------------------
[4152]	1920	CHARACTER(LEN=*), INTENT(in) :: cdname
[9367]	1921	CHARACTER(LEN=120) :: clname
[9019]	1922	!!----------------------------------------------------------------------
[9367]	1923	clname = cdname
	1924	IF( TRIM(Agrif_CFixed()) .NE. '0' ) clname = TRIM(Agrif_CFixed())//"_"//clname
	1925	IF( xios_is_valid_context(clname) ) THEN
[4990]	1926	CALL iom_swap( cdname ) ! swap to cdname context
	1927	CALL xios_context_finalize() ! finalize the context
[5407]	1928	IF( cdname /= TRIM(cxios_context) ) CALL iom_swap( TRIM(cxios_context) ) ! return back to nemo context
[4990]	1929	ENDIF
[9367]	1930	!
[4152]	1931	END SUBROUTINE iom_context_finalize
	1932
	1933
[9984]	1934	SUBROUTINE set_grid( cdgrd, plon, plat, ldxios, ldrxios )
[1359]	1935	!!----------------------------------------------------------------------
[4148]	1936	!! * ROUTINE set_grid *
[1359]	1937	!!
[1725]	1938	!! ** Purpose : define horizontal grids
[1359]	1939	!!----------------------------------------------------------------------
[3771]	1940	CHARACTER(LEN=1) , INTENT(in) :: cdgrd
[1359]	1941	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plon
	1942	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plat
[3771]	1943	!
[9019]	1944	INTEGER :: ni, nj
[3771]	1945	REAL(wp), DIMENSION(jpi,jpj,jpk) :: zmask
[9984]	1946	LOGICAL, INTENT(IN) :: ldxios, ldrxios
[9019]	1947	!!----------------------------------------------------------------------
	1948	!
	1949	ni = nlei-nldi+1
	1950	nj = nlej-nldj+1
	1951	!
[7646]	1952	CALL iom_set_domain_attr("grid_"//cdgrd, ni_glo=jpiglo, nj_glo=jpjglo, ibegin=nimpp+nldi-2, jbegin=njmpp+nldj-2, ni=ni, nj=nj)
[3771]	1953	CALL iom_set_domain_attr("grid_"//cdgrd, data_dim=2, data_ibegin = 1-nldi, data_ni = jpi, data_jbegin = 1-nldj, data_nj = jpj)
[9984]	1954	!don't define lon and lat for restart reading context.
	1955	IF ( .NOT.ldrxios ) &
	1956	CALL iom_set_domain_attr("grid_"//cdgrd, lonvalue = RESHAPE(plon(nldi:nlei, nldj:nlej),(/ ni*nj /)), &
[3771]	1957	& latvalue = RESHAPE(plat(nldi:nlei, nldj:nlej),(/ ni*nj /)))
[9019]	1958	!
[9367]	1959	IF ( ln_mskland .AND. (.NOT.ldxios) ) THEN
[3771]	1960	! mask land points, keep values on coast line -> specific mask for U, V and W points
	1961	SELECT CASE ( cdgrd )
	1962	CASE('T') ; zmask(:,:,:) = tmask(:,:,:)
[10425]	1963	CASE('U') ; zmask(2:jpim1,:,:) = tmask(2:jpim1,:,:) + tmask(3:jpi,:,:) ; CALL lbc_lnk( 'iom', zmask, 'U', 1. )
	1964	CASE('V') ; zmask(:,2:jpjm1,:) = tmask(:,2:jpjm1,:) + tmask(:,3:jpj,:) ; CALL lbc_lnk( 'iom', zmask, 'V', 1. )
[3771]	1965	CASE('W') ; zmask(:,:,2:jpk ) = tmask(:,:,1:jpkm1) + tmask(:,:,2:jpk) ; zmask(:,:,1) = tmask(:,:,1)
	1966	END SELECT
	1967	!
[7646]	1968	CALL iom_set_domain_attr( "grid_"//cdgrd , mask = RESHAPE(zmask(nldi:nlei,nldj:nlej,1),(/ni*nj /)) /= 0. )
[4148]	1969	CALL iom_set_grid_attr ( "grid_"//cdgrd//"_3D", mask = RESHAPE(zmask(nldi:nlei,nldj:nlej,:),(/ni,nj,jpk/)) /= 0. )
[3771]	1970	ENDIF
[9019]	1971	!
[1359]	1972	END SUBROUTINE set_grid
	1973
[1725]	1974
[5415]	1975	SUBROUTINE set_grid_bounds( cdgrd, plon_cnr, plat_cnr, plon_pnt, plat_pnt )
[5363]	1976	!!----------------------------------------------------------------------
	1977	!! * ROUTINE set_grid_bounds *
	1978	!!
	1979	!! ** Purpose : define horizontal grid corners
	1980	!!
	1981	!!----------------------------------------------------------------------
[9019]	1982	CHARACTER(LEN=1) , INTENT(in) :: cdgrd
	1983	REAL(wp), DIMENSION(jpi,jpj) , INTENT(in) :: plon_cnr, plat_cnr ! Lat/lon coord. of a contiguous vertex of cell (i,j)
	1984	REAL(wp), DIMENSION(jpi,jpj), OPTIONAL, INTENT(in) :: plon_pnt, plat_pnt ! Lat/lon coord. of the point of cell (i,j)
[5363]	1985	!
[9019]	1986	INTEGER :: ji, jj, jn, ni, nj
	1987	INTEGER :: icnr, jcnr ! Offset such that the vertex coordinate (i+icnr,j+jcnr)
	1988	! ! represents the bottom-left corner of cell (i,j)
	1989	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: z_bnds ! Lat/lon coordinates of the vertices of cell (i,j)
	1990	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: z_fld ! Working array to determine where to rotate cells
	1991	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: z_rot ! Lat/lon working array for rotation of cells
	1992	!!----------------------------------------------------------------------
[5415]	1993	!
[9019]	1994	ALLOCATE( z_bnds(4,jpi,jpj,2), z_fld(jpi,jpj), z_rot(4,2) )
[5363]	1995	!
[5415]	1996	! Offset of coordinate representing bottom-left corner
[5363]	1997	SELECT CASE ( TRIM(cdgrd) )
[9019]	1998	CASE ('T', 'W') ; icnr = -1 ; jcnr = -1
	1999	CASE ('U') ; icnr = 0 ; jcnr = -1
	2000	CASE ('V') ; icnr = -1 ; jcnr = 0
[5363]	2001	END SELECT
[9019]	2002	!
	2003	ni = nlei-nldi+1 ! Dimensions of subdomain interior
	2004	nj = nlej-nldj+1
	2005	!
[5363]	2006	z_fld(:,:) = 1._wp
[10425]	2007	CALL lbc_lnk( 'iom', z_fld, cdgrd, -1. ) ! Working array for location of northfold
[9019]	2008	!
[5363]	2009	! Cell vertices that can be defined
	2010	DO jj = 2, jpjm1
	2011	DO ji = 2, jpim1
[5415]	2012	z_bnds(1,ji,jj,1) = plat_cnr(ji+icnr, jj+jcnr ) ! Bottom-left
	2013	z_bnds(2,ji,jj,1) = plat_cnr(ji+icnr+1,jj+jcnr ) ! Bottom-right
	2014	z_bnds(3,ji,jj,1) = plat_cnr(ji+icnr+1,jj+jcnr+1) ! Top-right
	2015	z_bnds(4,ji,jj,1) = plat_cnr(ji+icnr, jj+jcnr+1) ! Top-left
	2016	z_bnds(1,ji,jj,2) = plon_cnr(ji+icnr, jj+jcnr ) ! Bottom-left
	2017	z_bnds(2,ji,jj,2) = plon_cnr(ji+icnr+1,jj+jcnr ) ! Bottom-right
	2018	z_bnds(3,ji,jj,2) = plon_cnr(ji+icnr+1,jj+jcnr+1) ! Top-right
	2019	z_bnds(4,ji,jj,2) = plon_cnr(ji+icnr, jj+jcnr+1) ! Top-left
[5363]	2020	END DO
	2021	END DO
[9019]	2022	!
[5363]	2023	! Cell vertices on boundries
	2024	DO jn = 1, 4
[11536]	2025	CALL lbc_lnk( 'iom', z_bnds(jn,:,:,1), cdgrd, 1., pfillval=999._wp )
	2026	CALL lbc_lnk( 'iom', z_bnds(jn,:,:,2), cdgrd, 1., pfillval=999._wp )
[5363]	2027	END DO
[9019]	2028	!
[5415]	2029	! Zero-size cells at closed boundaries if cell points provided,
	2030	! otherwise they are closed cells with unrealistic bounds
	2031	IF( PRESENT(plon_pnt) .AND. PRESENT(plat_pnt) ) THEN
	2032	IF( (nbondi == -1 .OR. nbondi == 2) .AND. .NOT. (jperio == 1 .OR. jperio == 4 .OR. jperio == 6) ) THEN
	2033	DO jn = 1, 4 ! (West or jpni = 1), closed E-W
	2034	z_bnds(jn,1,:,1) = plat_pnt(1,:) ; z_bnds(jn,1,:,2) = plon_pnt(1,:)
	2035	END DO
	2036	ENDIF
	2037	IF( (nbondi == 1 .OR. nbondi == 2) .AND. .NOT. (jperio == 1 .OR. jperio == 4 .OR. jperio == 6) ) THEN
	2038	DO jn = 1, 4 ! (East or jpni = 1), closed E-W
	2039	z_bnds(jn,nlci,:,1) = plat_pnt(nlci,:) ; z_bnds(jn,nlci,:,2) = plon_pnt(nlci,:)
	2040	END DO
	2041	ENDIF
	2042	IF( nbondj == -1 .OR. (nbondj == 2 .AND. jperio /= 2) ) THEN
	2043	DO jn = 1, 4 ! South or (jpnj = 1, not symmetric)
	2044	z_bnds(jn,:,1,1) = plat_pnt(:,1) ; z_bnds(jn,:,1,2) = plon_pnt(:,1)
	2045	END DO
	2046	ENDIF
	2047	IF( (nbondj == 1 .OR. nbondj == 2) .AND. jperio < 3 ) THEN
	2048	DO jn = 1, 4 ! (North or jpnj = 1), no north fold
	2049	z_bnds(jn,:,nlcj,1) = plat_pnt(:,nlcj) ; z_bnds(jn,:,nlcj,2) = plon_pnt(:,nlcj)
	2050	END DO
	2051	ENDIF
[5363]	2052	ENDIF
[9019]	2053	!
	2054	IF( (nbondj == 1 .OR. nbondj == 2) .AND. jperio >= 3 ) THEN ! Rotate cells at the north fold
[5363]	2055	DO jj = 1, jpj
	2056	DO ji = 1, jpi
	2057	IF( z_fld(ji,jj) == -1. ) THEN
	2058	z_rot(1,:) = z_bnds(3,ji,jj,:) ; z_rot(2,:) = z_bnds(4,ji,jj,:)
	2059	z_rot(3,:) = z_bnds(1,ji,jj,:) ; z_rot(4,:) = z_bnds(2,ji,jj,:)
	2060	z_bnds(:,ji,jj,:) = z_rot(:,:)
	2061	ENDIF
	2062	END DO
	2063	END DO
[9019]	2064	ELSE IF( nbondj == 2 .AND. jperio == 2 ) THEN ! Invert cells at the symmetric equator
[5363]	2065	DO ji = 1, jpi
	2066	z_rot(1:2,:) = z_bnds(3:4,ji,1,:)
	2067	z_rot(3:4,:) = z_bnds(1:2,ji,1,:)
	2068	z_bnds(:,ji,1,:) = z_rot(:,:)
	2069	END DO
	2070	ENDIF
[9019]	2071	!
[5363]	2072	CALL iom_set_domain_attr("grid_"//cdgrd, bounds_lat = RESHAPE(z_bnds(:,nldi:nlei,nldj:nlej,1),(/ 4,ni*nj /)), &
[9019]	2073	& bounds_lon = RESHAPE(z_bnds(:,nldi:nlei,nldj:nlej,2),(/ 4,ni*nj /)), nvertex=4 )
	2074	!
[5415]	2075	DEALLOCATE( z_bnds, z_fld, z_rot )
[9019]	2076	!
[5363]	2077	END SUBROUTINE set_grid_bounds
	2078
	2079
[5385]	2080	SUBROUTINE set_grid_znl( plat )
	2081	!!----------------------------------------------------------------------
	2082	!! * ROUTINE set_grid_znl *
	2083	!!
	2084	!! ** Purpose : define grids for zonal mean
	2085	!!
	2086	!!----------------------------------------------------------------------
	2087	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plat
	2088	!
[9019]	2089	INTEGER :: ni, nj, ix, iy
[5385]	2090	REAL(wp), DIMENSION(:), ALLOCATABLE :: zlon
[9019]	2091	!!----------------------------------------------------------------------
	2092	!
	2093	ni=nlei-nldi+1 ! define zonal mean domain (jpj*jpk)
	2094	nj=nlej-nldj+1
	2095	ALLOCATE( zlon(ni*nj) ) ; zlon(:) = 0._wp
	2096	!
[12276]	2097	! CALL dom_ngb( -168.53, 65.03, ix, iy, 'T' ) ! i-line that passes through Bering Strait: Reference latitude (used in plots)
	2098	CALL dom_ngb( 180., 90., ix, iy, 'T' ) ! i-line that passes near the North Pole : Reference latitude (used in plots)
[7646]	2099	CALL iom_set_domain_attr("gznl", ni_glo=jpiglo, nj_glo=jpjglo, ibegin=nimpp+nldi-2, jbegin=njmpp+nldj-2, ni=ni, nj=nj)
[5385]	2100	CALL iom_set_domain_attr("gznl", data_dim=2, data_ibegin = 1-nldi, data_ni = jpi, data_jbegin = 1-nldj, data_nj = jpj)
	2101	CALL iom_set_domain_attr("gznl", lonvalue = zlon, &
	2102	& latvalue = RESHAPE(plat(nldi:nlei, nldj:nlej),(/ ni*nj /)))
[12276]	2103	CALL iom_set_zoom_domain_attr("ptr", ibegin=ix-1, jbegin=0, ni=1, nj=jpjglo)
[5385]	2104	!
	2105	CALL iom_update_file_name('ptr')
	2106	!
	2107	END SUBROUTINE set_grid_znl
	2108
[9019]	2109
[1738]	2110	SUBROUTINE set_scalar
	2111	!!----------------------------------------------------------------------
[4148]	2112	!! * ROUTINE set_scalar *
[1738]	2113	!!
	2114	!! ** Purpose : define fake grids for scalar point
	2115	!!
	2116	!!----------------------------------------------------------------------
[5426]	2117	REAL(wp), DIMENSION(1) :: zz = 1.
[1738]	2118	!!----------------------------------------------------------------------
[9019]	2119	!
[7646]	2120	CALL iom_set_domain_attr('scalarpoint', ni_glo=jpnij, nj_glo=1, ibegin=narea-1, jbegin=0, ni=1, nj=1)
[5426]	2121	CALL iom_set_domain_attr('scalarpoint', data_dim=2, data_ibegin = 1, data_ni = 1, data_jbegin = 1, data_nj = 1)
[9019]	2122	!
	2123	zz = REAL( narea, wp )
[5426]	2124	CALL iom_set_domain_attr('scalarpoint', lonvalue=zz, latvalue=zz)
[9019]	2125	!
[1738]	2126	END SUBROUTINE set_scalar
	2127
	2128
[1725]	2129	SUBROUTINE set_xmlatt
	2130	!!----------------------------------------------------------------------
[4148]	2131	!! * ROUTINE set_xmlatt *
[1725]	2132	!!
	2133	!! ** Purpose : automatic definitions of some of the xml attributs...
	2134	!!
	2135	!!----------------------------------------------------------------------
	2136	CHARACTER(len=1),DIMENSION( 3) :: clgrd ! suffix name
[4148]	2137	CHARACTER(len=256) :: clsuff ! suffix name
[1725]	2138	CHARACTER(len=1) :: cl1 ! 1 character
[5003]	2139	CHARACTER(len=2) :: cl2 ! 2 characters
	2140	CHARACTER(len=3) :: cl3 ! 3 characters
[4148]	2141	INTEGER :: ji, jg ! loop counters
[1725]	2142	INTEGER :: ix, iy ! i-,j- index
	2143	REAL(wp) ,DIMENSION(11) :: zlontao ! longitudes of tao moorings
	2144	REAL(wp) ,DIMENSION( 7) :: zlattao ! latitudes of tao moorings
	2145	REAL(wp) ,DIMENSION( 4) :: zlonrama ! longitudes of rama moorings
	2146	REAL(wp) ,DIMENSION(11) :: zlatrama ! latitudes of rama moorings
	2147	REAL(wp) ,DIMENSION( 3) :: zlonpira ! longitudes of pirata moorings
	2148	REAL(wp) ,DIMENSION( 9) :: zlatpira ! latitudes of pirata moorings
[7646]	2149	TYPE(xios_duration) :: f_op, f_of
[1725]	2150	!!----------------------------------------------------------------------
	2151	!
	2152	! frequency of the call of iom_put (attribut: freq_op)
[9019]	2153	f_op%timestep = 1 ; f_of%timestep = 0 ; CALL iom_set_field_attr('field_definition', freq_op=f_op, freq_offset=f_of)
	2154	f_op%timestep = 2 ; f_of%timestep = 0 ; CALL iom_set_field_attr('trendT_even' , freq_op=f_op, freq_offset=f_of)
	2155	f_op%timestep = 2 ; f_of%timestep = -1 ; CALL iom_set_field_attr('trendT_odd' , freq_op=f_op, freq_offset=f_of)
	2156	f_op%timestep = nn_fsbc ; f_of%timestep = 0 ; CALL iom_set_field_attr('SBC' , freq_op=f_op, freq_offset=f_of)
	2157	f_op%timestep = nn_fsbc ; f_of%timestep = 0 ; CALL iom_set_field_attr('SBC_scalar' , freq_op=f_op, freq_offset=f_of)
	2158	f_op%timestep = nn_dttrc ; f_of%timestep = 0 ; CALL iom_set_field_attr('ptrc_T' , freq_op=f_op, freq_offset=f_of)
	2159	f_op%timestep = nn_dttrc ; f_of%timestep = 0 ; CALL iom_set_field_attr('diad_T' , freq_op=f_op, freq_offset=f_of)
[7646]	2160
[1725]	2161	! output file names (attribut: name)
[4148]	2162	DO ji = 1, 9
	2163	WRITE(cl1,'(i1)') ji
	2164	CALL iom_update_file_name('file'//cl1)
[1725]	2165	END DO
[4148]	2166	DO ji = 1, 99
	2167	WRITE(cl2,'(i2.2)') ji
	2168	CALL iom_update_file_name('file'//cl2)
	2169	END DO
[5003]	2170	DO ji = 1, 999
	2171	WRITE(cl3,'(i3.3)') ji
	2172	CALL iom_update_file_name('file'//cl3)
	2173	END DO
[1725]	2174
	2175	! Zooms...
	2176	clgrd = (/ 'T', 'U', 'W' /)
	2177	DO jg = 1, SIZE(clgrd) ! grid type
	2178	cl1 = clgrd(jg)
	2179	! Equatorial section (attributs: jbegin, ni, name_suffix)
	2180	CALL dom_ngb( 0., 0., ix, iy, cl1 )
[9930]	2181	CALL iom_set_zoom_domain_attr('Eq'//cl1, ibegin=0, jbegin=iy-1, ni=jpiglo, nj=1 )
[4148]	2182	CALL iom_get_file_attr ('Eq'//cl1, name_suffix = clsuff )
	2183	CALL iom_set_file_attr ('Eq'//cl1, name_suffix = TRIM(clsuff)//'_Eq')
	2184	CALL iom_update_file_name('Eq'//cl1)
[1725]	2185	END DO
	2186	! TAO moorings (attributs: ibegin, jbegin, name_suffix)
	2187	zlontao = (/ 137.0, 147.0, 156.0, 165.0, -180.0, -170.0, -155.0, -140.0, -125.0, -110.0, -95.0 /)
	2188	zlattao = (/ -8.0, -5.0, -2.0, 0.0, 2.0, 5.0, 8.0 /)
	2189	CALL set_mooring( zlontao, zlattao )
	2190	! RAMA moorings (attributs: ibegin, jbegin, name_suffix)
	2191	zlonrama = (/ 55.0, 67.0, 80.5, 90.0 /)
	2192	zlatrama = (/ -16.0, -12.0, -8.0, -4.0, -1.5, 0.0, 1.5, 4.0, 8.0, 12.0, 15.0 /)
	2193	CALL set_mooring( zlonrama, zlatrama )
	2194	! PIRATA moorings (attributs: ibegin, jbegin, name_suffix)
	2195	zlonpira = (/ -38.0, -23.0, -10.0 /)
	2196	zlatpira = (/ -19.0, -14.0, -8.0, 0.0, 4.0, 8.0, 12.0, 15.0, 20.0 /)
	2197	CALL set_mooring( zlonpira, zlatpira )
[9019]	2198	!
[1725]	2199	END SUBROUTINE set_xmlatt
	2200
	2201
[9019]	2202	SUBROUTINE set_mooring( plon, plat )
[1725]	2203	!!----------------------------------------------------------------------
[4148]	2204	!! * ROUTINE set_mooring *
[1725]	2205	!!
	2206	!! ** Purpose : automatic definitions of moorings xml attributs...
	2207	!!
	2208	!!----------------------------------------------------------------------
[9019]	2209	REAL(wp), DIMENSION(:), INTENT(in) :: plon, plat ! longitudes/latitudes oft the mooring
[1725]	2210	!
	2211	!!$ CHARACTER(len=1),DIMENSION(4) :: clgrd = (/ 'T', 'U', 'V', 'W' /) ! suffix name
	2212	CHARACTER(len=1),DIMENSION(1) :: clgrd = (/ 'T' /) ! suffix name
[4148]	2213	CHARACTER(len=256) :: clname ! file name
	2214	CHARACTER(len=256) :: clsuff ! suffix name
[1725]	2215	CHARACTER(len=1) :: cl1 ! 1 character
	2216	CHARACTER(len=6) :: clon,clat ! name of longitude, latitude
	2217	INTEGER :: ji, jj, jg ! loop counters
	2218	INTEGER :: ix, iy ! i-,j- index
	2219	REAL(wp) :: zlon, zlat
	2220	!!----------------------------------------------------------------------
	2221	DO jg = 1, SIZE(clgrd)
	2222	cl1 = clgrd(jg)
	2223	DO ji = 1, SIZE(plon)
	2224	DO jj = 1, SIZE(plat)
	2225	zlon = plon(ji)
	2226	zlat = plat(jj)
	2227	! modifications for RAMA moorings
	2228	IF( zlon == 67. .AND. zlat == 15. ) zlon = 65.
	2229	IF( zlon == 90. .AND. zlat <= -4. ) zlon = 95.
	2230	IF( zlon == 95. .AND. zlat == -4. ) zlat = -5.
	2231	! modifications for PIRATA moorings
	2232	IF( zlon == -38. .AND. zlat == -19. ) zlon = -34.
	2233	IF( zlon == -38. .AND. zlat == -14. ) zlon = -32.
	2234	IF( zlon == -38. .AND. zlat == -8. ) zlon = -30.
	2235	IF( zlon == -38. .AND. zlat == 0. ) zlon = -35.
	2236	IF( zlon == -23. .AND. zlat == 20. ) zlat = 21.
	2237	IF( zlon == -10. .AND. zlat == -14. ) zlat = -10.
	2238	IF( zlon == -10. .AND. zlat == -8. ) zlat = -6.
	2239	IF( zlon == -10. .AND. zlat == 4. ) THEN ; zlon = 0. ; zlat = 0. ; ENDIF
	2240	CALL dom_ngb( zlon, zlat, ix, iy, cl1 )
	2241	IF( zlon >= 0. ) THEN
	2242	IF( zlon == REAL(NINT(zlon), wp) ) THEN ; WRITE(clon, '(i3, a)') NINT( zlon), 'e'
	2243	ELSE ; WRITE(clon, '(f5.1,a)') zlon , 'e'
	2244	ENDIF
	2245	ELSE
	2246	IF( zlon == REAL(NINT(zlon), wp) ) THEN ; WRITE(clon, '(i3, a)') NINT(-zlon), 'w'
	2247	ELSE ; WRITE(clon, '(f5.1,a)') -zlon , 'w'
	2248	ENDIF
	2249	ENDIF
	2250	IF( zlat >= 0. ) THEN
	2251	IF( zlat == REAL(NINT(zlat), wp) ) THEN ; WRITE(clat, '(i2, a)') NINT( zlat), 'n'
	2252	ELSE ; WRITE(clat, '(f4.1,a)') zlat , 'n'
	2253	ENDIF
	2254	ELSE
	2255	IF( zlat == REAL(NINT(zlat), wp) ) THEN ; WRITE(clat, '(i2, a)') NINT(-zlat), 's'
	2256	ELSE ; WRITE(clat, '(f4.1,a)') -zlat , 's'
	2257	ENDIF
	2258	ENDIF
	2259	clname = TRIM(ADJUSTL(clat))//TRIM(ADJUSTL(clon))
[9930]	2260	CALL iom_set_zoom_domain_attr(TRIM(clname)//cl1, ibegin= ix-1, jbegin= iy-1, ni=1, nj=1)
[7646]	2261
[4148]	2262	CALL iom_get_file_attr (TRIM(clname)//cl1, name_suffix = clsuff )
	2263	CALL iom_set_file_attr (TRIM(clname)//cl1, name_suffix = TRIM(clsuff)//'_'//TRIM(clname))
	2264	CALL iom_update_file_name(TRIM(clname)//cl1)
[1725]	2265	END DO
	2266	END DO
	2267	END DO
	2268
	2269	END SUBROUTINE set_mooring
	2270
[4148]	2271
	2272	SUBROUTINE iom_update_file_name( cdid )
	2273	!!----------------------------------------------------------------------
	2274	!! * ROUTINE iom_update_file_name *
	2275	!!
	2276	!! ** Purpose :
	2277	!!
	2278	!!----------------------------------------------------------------------
	2279	CHARACTER(LEN=*) , INTENT(in) :: cdid
	2280	!
	2281	CHARACTER(LEN=256) :: clname
	2282	CHARACTER(LEN=20) :: clfreq
	2283	CHARACTER(LEN=20) :: cldate
[11554]	2284	CHARACTER(LEN=256) :: cltmpn !FUS needed for correct path with AGRIF
	2285	INTEGER :: iln !FUS needed for correct path with AGRIF
[4148]	2286	INTEGER :: idx
	2287	INTEGER :: jn
	2288	INTEGER :: itrlen
	2289	INTEGER :: iyear, imonth, iday, isec
	2290	REAL(wp) :: zsec
	2291	LOGICAL :: llexist
[7646]	2292	TYPE(xios_duration) :: output_freq
[4148]	2293	!!----------------------------------------------------------------------
[9019]	2294	!
	2295	DO jn = 1, 2
	2296	!
[7646]	2297	output_freq = xios_duration(0,0,0,0,0,0)
	2298	IF( jn == 1 ) CALL iom_get_file_attr( cdid, name = clname, output_freq = output_freq )
[4148]	2299	IF( jn == 2 ) CALL iom_get_file_attr( cdid, name_suffix = clname )
[9019]	2300	!
[4148]	2301	IF ( TRIM(clname) /= '' ) THEN
[9019]	2302	!
[4148]	2303	idx = INDEX(clname,'@expname@') + INDEX(clname,'@EXPNAME@')
	2304	DO WHILE ( idx /= 0 )
	2305	clname = clname(1:idx-1)//TRIM(cexper)//clname(idx+9:LEN_TRIM(clname))
	2306	idx = INDEX(clname,'@expname@') + INDEX(clname,'@EXPNAME@')
	2307	END DO
[9019]	2308	!
[4148]	2309	idx = INDEX(clname,'@freq@') + INDEX(clname,'@FREQ@')
	2310	DO WHILE ( idx /= 0 )
[7646]	2311	IF ( output_freq%timestep /= 0) THEN
	2312	WRITE(clfreq,'(I18,A2)')INT(output_freq%timestep),'ts'
	2313	itrlen = LEN_TRIM(ADJUSTL(clfreq))
[7764]	2314	ELSE IF ( output_freq%second /= 0 ) THEN
	2315	WRITE(clfreq,'(I19,A1)')INT(output_freq%second),'s'
	2316	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2317	ELSE IF ( output_freq%minute /= 0 ) THEN
[7768]	2318	WRITE(clfreq,'(I18,A2)')INT(output_freq%minute),'mi'
[7764]	2319	itrlen = LEN_TRIM(ADJUSTL(clfreq))
[7646]	2320	ELSE IF ( output_freq%hour /= 0 ) THEN
	2321	WRITE(clfreq,'(I19,A1)')INT(output_freq%hour),'h'
	2322	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2323	ELSE IF ( output_freq%day /= 0 ) THEN
	2324	WRITE(clfreq,'(I19,A1)')INT(output_freq%day),'d'
	2325	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2326	ELSE IF ( output_freq%month /= 0 ) THEN
	2327	WRITE(clfreq,'(I19,A1)')INT(output_freq%month),'m'
	2328	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2329	ELSE IF ( output_freq%year /= 0 ) THEN
	2330	WRITE(clfreq,'(I19,A1)')INT(output_freq%year),'y'
	2331	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2332	ELSE
[4148]	2333	CALL ctl_stop('error in the name of file id '//TRIM(cdid), &
	2334	& ' attribute output_freq is undefined -> cannot replace @freq@ in '//TRIM(clname) )
[7646]	2335	ENDIF
	2336	clname = clname(1:idx-1)//TRIM(ADJUSTL(clfreq))//clname(idx+6:LEN_TRIM(clname))
	2337	idx = INDEX(clname,'@freq@') + INDEX(clname,'@FREQ@')
[4148]	2338	END DO
[9019]	2339	!
[4148]	2340	idx = INDEX(clname,'@startdate@') + INDEX(clname,'@STARTDATE@')
	2341	DO WHILE ( idx /= 0 )
[6140]	2342	cldate = iom_sdate( fjulday - rdt / rday )
[4148]	2343	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+11:LEN_TRIM(clname))
	2344	idx = INDEX(clname,'@startdate@') + INDEX(clname,'@STARTDATE@')
	2345	END DO
[9019]	2346	!
[4148]	2347	idx = INDEX(clname,'@startdatefull@') + INDEX(clname,'@STARTDATEFULL@')
	2348	DO WHILE ( idx /= 0 )
[6140]	2349	cldate = iom_sdate( fjulday - rdt / rday, ldfull = .TRUE. )
[4148]	2350	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+15:LEN_TRIM(clname))
	2351	idx = INDEX(clname,'@startdatefull@') + INDEX(clname,'@STARTDATEFULL@')
	2352	END DO
[9019]	2353	!
[4148]	2354	idx = INDEX(clname,'@enddate@') + INDEX(clname,'@ENDDATE@')
	2355	DO WHILE ( idx /= 0 )
[6140]	2356	cldate = iom_sdate( fjulday + rdt / rday * REAL( nitend - nit000, wp ), ld24 = .TRUE. )
[4148]	2357	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+9:LEN_TRIM(clname))
	2358	idx = INDEX(clname,'@enddate@') + INDEX(clname,'@ENDDATE@')
	2359	END DO
[9019]	2360	!
[4148]	2361	idx = INDEX(clname,'@enddatefull@') + INDEX(clname,'@ENDDATEFULL@')
	2362	DO WHILE ( idx /= 0 )
[6140]	2363	cldate = iom_sdate( fjulday + rdt / rday * REAL( nitend - nit000, wp ), ld24 = .TRUE., ldfull = .TRUE. )
[4148]	2364	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+13:LEN_TRIM(clname))
	2365	idx = INDEX(clname,'@enddatefull@') + INDEX(clname,'@ENDDATEFULL@')
	2366	END DO
[9019]	2367	!
[11554]	2368	!FUS IF( jn == 1 .AND. TRIM(Agrif_CFixed()) /= '0' ) clname = TRIM(Agrif_CFixed())//"_"//TRIM(clname)
	2369	!FUS see comment line 700
	2370	IF( jn == 1 .AND. TRIM(Agrif_CFixed()) /= '0' ) THEN
	2371	iln = INDEX(clname,'/',BACK=.true.)
	2372	cltmpn = clname(1:iln)
	2373	clname = clname(iln+1:LEN_TRIM(clname))
	2374	clname = TRIM(cltmpn)//TRIM(Agrif_CFixed())//'_'//TRIM(clname)
	2375	ENDIF
	2376	!FUS
[4148]	2377	IF( jn == 1 ) CALL iom_set_file_attr( cdid, name = clname )
	2378	IF( jn == 2 ) CALL iom_set_file_attr( cdid, name_suffix = clname )
[9019]	2379	!
[4148]	2380	ENDIF
[9019]	2381	!
[4148]	2382	END DO
[9019]	2383	!
[4148]	2384	END SUBROUTINE iom_update_file_name
	2385
	2386
	2387	FUNCTION iom_sdate( pjday, ld24, ldfull )
	2388	!!----------------------------------------------------------------------
	2389	!! * ROUTINE iom_sdate *
	2390	!!
	2391	!! ** Purpose : send back the date corresponding to the given julian day
	2392	!!----------------------------------------------------------------------
[9019]	2393	REAL(wp), INTENT(in ) :: pjday ! julian day
	2394	LOGICAL , INTENT(in ), OPTIONAL :: ld24 ! true to force 24:00 instead of 00:00
	2395	LOGICAL , INTENT(in ), OPTIONAL :: ldfull ! true to get the compleate date: yyyymmdd_hh:mm:ss
[4148]	2396	!
	2397	CHARACTER(LEN=20) :: iom_sdate
	2398	CHARACTER(LEN=50) :: clfmt ! format used to write the date
	2399	INTEGER :: iyear, imonth, iday, ihour, iminute, isec
	2400	REAL(wp) :: zsec
	2401	LOGICAL :: ll24, llfull
[9019]	2402	!!----------------------------------------------------------------------
[4148]	2403	!
	2404	IF( PRESENT(ld24) ) THEN ; ll24 = ld24
	2405	ELSE ; ll24 = .FALSE.
	2406	ENDIF
[9019]	2407	!
[4148]	2408	IF( PRESENT(ldfull) ) THEN ; llfull = ldfull
	2409	ELSE ; llfull = .FALSE.
	2410	ENDIF
[9019]	2411	!
[4148]	2412	CALL ju2ymds( pjday, iyear, imonth, iday, zsec )
	2413	isec = NINT(zsec)
[9019]	2414	!
[4148]	2415	IF ( ll24 .AND. isec == 0 ) THEN ! 00:00 of the next day -> move to 24:00 of the current day
	2416	CALL ju2ymds( pjday - 1., iyear, imonth, iday, zsec )
	2417	isec = 86400
	2418	ENDIF
[9019]	2419	!
[4148]	2420	IF( iyear < 10000 ) THEN ; clfmt = "i4.4,2i2.2" ! format used to write the date
	2421	ELSE ; WRITE(clfmt, "('i',i1,',2i2.2')") INT(LOG10(REAL(iyear,wp))) + 1
	2422	ENDIF
[9019]	2423	!
[5656]	2424	!$AGRIF_DO_NOT_TREAT
[9019]	2425	! needed in the conv
[4148]	2426	IF( llfull ) THEN
	2427	clfmt = TRIM(clfmt)//",'_',i2.2,':',i2.2,':',i2.2"
	2428	ihour = isec / 3600
	2429	isec = MOD(isec, 3600)
	2430	iminute = isec / 60
	2431	isec = MOD(isec, 60)
	2432	WRITE(iom_sdate, '('//TRIM(clfmt)//')') iyear, imonth, iday, ihour, iminute, isec ! date of the end of run
	2433	ELSE
	2434	WRITE(iom_sdate, '('//TRIM(clfmt)//')') iyear, imonth, iday ! date of the end of run
	2435	ENDIF
[5656]	2436	!$AGRIF_END_DO_NOT_TREAT
[9019]	2437	!
[4148]	2438	END FUNCTION iom_sdate
	2439
[1359]	2440	#else
[9019]	2441	!!----------------------------------------------------------------------
	2442	!! NOT 'key_iomput' a few dummy routines
	2443	!!----------------------------------------------------------------------
[4152]	2444	SUBROUTINE iom_setkt( kt, cdname )
	2445	INTEGER , INTENT(in):: kt
	2446	CHARACTER(LEN=*), INTENT(in) :: cdname
	2447	IF( .FALSE. ) WRITE(numout,*) kt, cdname ! useless test to avoid compilation warnings
[1359]	2448	END SUBROUTINE iom_setkt
	2449
[4152]	2450	SUBROUTINE iom_context_finalize( cdname )
	2451	CHARACTER(LEN=*), INTENT(in) :: cdname
	2452	IF( .FALSE. ) WRITE(numout,*) cdname ! useless test to avoid compilation warnings
	2453	END SUBROUTINE iom_context_finalize
	2454
[1359]	2455	#endif
[4689]	2456
	2457	LOGICAL FUNCTION iom_use( cdname )
	2458	CHARACTER(LEN=*), INTENT(in) :: cdname
	2459	#if defined key_iomput
	2460	iom_use = xios_field_is_active( cdname )
	2461	#else
	2462	iom_use = .FALSE.
	2463	#endif
	2464	END FUNCTION iom_use
[11536]	2465
	2466	SUBROUTINE iom_miss_val( cdname, pmiss_val )
	2467	CHARACTER(LEN=*), INTENT(in ) :: cdname
	2468	REAL(wp) , INTENT(out) :: pmiss_val
	2469	#if defined key_iomput
	2470	! get missing value
	2471	CALL xios_get_field_attr( cdname, default_value = pmiss_val )
	2472	#else
	2473	IF( .FALSE. ) WRITE(numout,*) cdname, pmiss_val ! useless test to avoid compilation warnings
[12859]	2474	IF( .FALSE. ) pmiss_val = 0._wp ! useless assignment to avoid compilation warnings
[11536]	2475	#endif
	2476	END SUBROUTINE iom_miss_val
	2477
[544]	2478	!!======================================================================
	2479	END MODULE iom

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source: NEMO/branches/UKMO/NEMO_4.0.4_icesheet_and_river_coupling/src/OCE/IOM/iom.F90 @ 14643

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