1 | #!/bin/bash |
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2 | #! |
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3 | #BSUB -q poe_short |
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4 | #BSUB -n TOTAL_NPROCS |
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5 | #BSUB -a poe |
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6 | #BSUB -J NEMO_SETTE |
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7 | #BSUB -o poe.stdout.%J |
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8 | #BSUB -e poe.stderr.%J |
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9 | |
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10 | |
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11 | |
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12 | ############################################################### |
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13 | # Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these |
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14 | # (via sed operating on this template job file). |
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15 | # |
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16 | OCEANCORES=NPROCS |
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17 | XIOS_NUMPROCS=NXIOPROCS |
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18 | export SETTE_DIR=DEF_SETTE_DIR |
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19 | |
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20 | ############################################################### |
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21 | # |
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22 | # set up mpp computing environment |
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23 | # |
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24 | # Local settings for machine IBM Power6 (VARGAS at IDRIS France) |
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25 | # |
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26 | |
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27 | # export MPIRUN="mpirun -n $OCEANCORES" |
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28 | |
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29 | module load INTEL/intel_xe_2013 NETCDF/netcdf-4.3_parallel NETCDF/parallel-netcdf-1.3.1 HDF5/hdf5-1.8.11_parallel |
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30 | export MPIRUN="mpirun.lsf" |
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31 | |
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32 | export LD_LIBRARY_PATH=${XIOS}/lib:${LD_LIBRARY_PATH} |
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33 | |
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34 | XIOS_SERVER_PATHNAME="${XIOS}/bin/xios_server.exe" |
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35 | |
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36 | # |
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37 | # load sette functions (only post_test_tidyup needed) |
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38 | # |
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39 | . ${SETTE_DIR}/all_functions.sh |
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40 | |
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41 | |
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42 | # Don't remove neither change the following line |
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43 | # BODY |
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44 | |
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45 | # |
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46 | # These variables are needed by post_test_tidyup function in all_functions.sh |
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47 | # |
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48 | export EXE_DIR=DEF_EXE_DIR |
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49 | export INPUT_DIR=DEF_INPUT_DIR |
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50 | export CONFIG_DIR=DEF_CONFIG_DIR |
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51 | export NEMO_VALIDATION_DIR=DEF_NEMO_VALIDATION |
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52 | export NEW_CONF=DEF_NEW_CONF |
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53 | export CMP_NAM=DEF_CMP_NAM |
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54 | export TEST_NAME=DEF_TEST_NAME |
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55 | # |
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56 | # end of set up |
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57 | |
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58 | |
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59 | ############################################################### |
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60 | # |
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61 | # change to the working directory |
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62 | # |
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63 | cd ${EXE_DIR} |
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64 | |
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65 | # |
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66 | echo Running on host `hostname` |
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67 | echo Time is `date` |
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68 | echo Directory is `pwd` |
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69 | # |
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70 | # Run the parallel MPI executable |
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71 | # |
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72 | # echo "Running time ${MPIRUN} " $OCEANCORES " ./opa" |
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73 | # |
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74 | |
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75 | if [ MPI_FLAG == "yes" ]; then |
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76 | if [ $XIOS_NUMPROCS -eq 0 ]; then |
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77 | time ${MPIRUN} ./opa |
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78 | else |
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79 | |
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80 | export MP_PGMMODEL=mpmd |
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81 | export MP_CMDFILE=xioscmdfile |
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82 | rm xioscmdfile &> /dev/null |
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83 | touch xioscmdfile |
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84 | k=0 |
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85 | while (( k < $OCEANCORES )) ; do |
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86 | echo ./opa >> xioscmdfile |
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87 | k=`expr $k + 1` |
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88 | done |
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89 | k=0 |
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90 | while (( k < $XIOS_NUMPROCS )) ; do |
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91 | echo $XIOS_SERVER_PATHNAME >> xioscmdfile |
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92 | k=`expr $k + 1` |
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93 | done |
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94 | |
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95 | time ${MPIRUN} |
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96 | fi |
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97 | else |
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98 | time ./opa |
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99 | fi |
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100 | # |
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101 | post_test_tidyup |
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102 | |
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103 | # END_BODY |
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104 | # Don't remove neither change the previous line |
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105 | |
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106 | exit |
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