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CHANGES in NEMO/releases/r4.0/r4.0.2 – NEMO

source: NEMO/releases/r4.0/r4.0.2/CHANGES @ 14548

Last change on this file since 14548 was 14488, checked in by nicolasmartin, 3 years ago

Add CHANGES
Logs:

  • release-4.0.2 : svn log -r 12577:12376 ^/NEMO/releases/release-4.0.2@12577
  • release-4.0-HEAD: svn log -r 12375:12375 ^/NEMO/releases/release-4.0-HEAD@12375
  • trunk : svn log -r 12374:11698 ^/NEMO/trunk@12374

Diff: svn diff --summarize --ignore-properties . ^/NEMO/releases/release-4.0.1 | sort -k2
File size: 29.3 KB
Line 
1#######
2Commits
3#######
4
5------------------------------------------------------------------------
6r12389 | smueller | 2020-02-14 17:56:54 +0100 (ven., 14 févr. 2020) | 5 lines
7
8Pinning of revision numbers in externals definitions and adjustments of the documentation (version numbers, download URL, etc.) for the latest point release of NEMO version 4.0
9
10These changes should have been made in NEMO/releases/release-4.0-HEAD prior to creating the tag NEMO/releases/release-4.0.2.
11
12
13------------------------------------------------------------------------
14r12376 | acc | 2020-02-12 15:06:23 +0100 (mer., 12 févr. 2020) | 1 line
15
16Immediate tag copy of 4.0-HEAD as release-4.0.2. From now on point releases (such as this) should remain unchanged. Bug fixes or additions in response to tickets should be done on the 4.0-HEAD branch and a new point release made when appropriate
17------------------------------------------------------------------------
18r12375 | acc | 2020-02-12 15:00:13 +0100 (mer., 12 févr. 2020) | 1 line
19
20Copied trunk@12367 to releases/release-4.0-HEAD before merging in 2019 developments
21------------------------------------------------------------------------
22r12367 | clem | 2020-02-11 19:37:34 +0100 (mar., 11 févr. 2020) | 1 line
23
24solve ticket #2380
25------------------------------------------------------------------------
26r12366 | jchanut | 2020-02-11 12:17:24 +0100 (mar., 11 févr. 2020) | 2 lines
27
28#2317, revert to the correct sign for asselin term on e3t and runoffs
29
30------------------------------------------------------------------------
31r12337 | cetlod | 2020-01-27 14:47:23 +0100 (lun., 27 janv. 2020) | 1 line
32
33trunk : defining ice transport component on U/V grid ; otherwise grid transformation fails when trying to compute strait
34------------------------------------------------------------------------
35r12331 | cetlod | 2020-01-17 09:00:10 +0100 (ven., 17 janv. 2020) | 1 line
36
37trunk : Minor changes on grid_def
38------------------------------------------------------------------------
39r12300 | cetlod | 2020-01-06 09:31:02 +0100 (lun., 06 janv. 2020) | 1 line
40
41Minor fix on CFC to avoid bad interpolation
42------------------------------------------------------------------------
43r12296 | mathiot | 2019-12-30 20:34:01 +0100 (lun., 30 déc. 2019) | 1 line
44
45fix #2360
46------------------------------------------------------------------------
47r12294 | mathiot | 2019-12-30 19:46:59 +0100 (lun., 30 déc. 2019) | 1 line
48
49fix #2359
50------------------------------------------------------------------------
51r12292 | mathiot | 2019-12-30 18:07:45 +0100 (lun., 30 déc. 2019) | 1 line
52
53fix #2358
54------------------------------------------------------------------------
55r12291 | mathiot | 2019-12-30 17:43:47 +0100 (lun., 30 déc. 2019) | 1 line
56
57fix icb reproducibility into the trunk (ticket #2238)
58------------------------------------------------------------------------
59r12288 | smasson | 2019-12-26 16:22:36 +0100 (jeu., 26 déc. 2019) | 1 line
60
61trunk : minor bugfix/cleaning
62------------------------------------------------------------------------
63r12284 | cetlod | 2019-12-23 12:05:58 +0100 (lun., 23 déc. 2019) | 1 line
64
65trunk:give the right unit to ocean carbon flux
66------------------------------------------------------------------------
67r12283 | cetlod | 2019-12-23 11:40:48 +0100 (lun., 23 déc. 2019) | 1 line
68
69trunk:revert some changes done in sbccpl.F90
70------------------------------------------------------------------------
71r12280 | cetlod | 2019-12-21 11:42:44 +0100 (sam., 21 déc. 2019) | 1 line
72
73bugfix in trunk : initialise local array in PISCES, see ticket #2357
74------------------------------------------------------------------------
75r12279 | jchanut | 2019-12-20 14:36:15 +0100 (ven., 20 déc. 2019) | 2 lines
76
77#2317, changes for LFRA freshwater correction
78
79------------------------------------------------------------------------
80r12278 | cetlod | 2019-12-20 13:41:08 +0100 (ven., 20 déc. 2019) | 1 line
81
82trunk : minor correction in use of diaptr
83------------------------------------------------------------------------
84r12277 | cetlod | 2019-12-20 12:54:47 +0100 (ven., 20 déc. 2019) | 1 line
85
86trunk : Minor corrections
87------------------------------------------------------------------------
88r12276 | cetlod | 2019-12-20 12:14:26 +0100 (ven., 20 déc. 2019) | 1 line
89
90trunk : merge in some cmip6 diagnostics into the trunk before copying it to release-4.0.2(-head). SETTE tests are OK and the is no difference with the revision 12248
91------------------------------------------------------------------------
92r12248 | smasson | 2019-12-13 17:33:53 +0100 (ven., 13 déc. 2019) | 1 line
93
94trunk : clean useless warnings in fldread
95------------------------------------------------------------------------
96r12232 | cetlod | 2019-12-13 09:25:14 +0100 (ven., 13 déc. 2019) | 1 line
97
98trunk : bugfixes on grazing diagnostics, see ticket #2260
99------------------------------------------------------------------------
100r12230 | smasson | 2019-12-12 18:15:21 +0100 (jeu., 12 déc. 2019) | 1 line
101
102trunk: missing part in supressing diatmb, see #1759
103------------------------------------------------------------------------
104r12214 | smasson | 2019-12-12 16:46:06 +0100 (jeu., 12 déc. 2019) | 1 line
105
106trunk: put back 1 line accidentally deleted by [12206]
107------------------------------------------------------------------------
108r12213 | smasson | 2019-12-12 16:32:02 +0100 (jeu., 12 déc. 2019) | 1 line
109
110trunk: update xml files to define missing grids, see #2255
111------------------------------------------------------------------------
112r12208 | smasson | 2019-12-12 12:20:21 +0100 (jeu., 12 déc. 2019) | 1 line
113
114trunk: move back cpp_AGRIF_DEMO and cpp_VORTEX mofified by [12206]
115------------------------------------------------------------------------
116r12206 | smasson | 2019-12-12 12:14:55 +0100 (jeu., 12 déc. 2019) | 1 line
117
118trunk: supress diatmb as it was bugged and already coded in diawri, see #1759
119------------------------------------------------------------------------
120r12201 | smasson | 2019-12-12 09:51:33 +0100 (jeu., 12 déc. 2019) | 1 line
121
122trunk: correct [12194], see #2265
123------------------------------------------------------------------------
124r12198 | smasson | 2019-12-12 09:16:14 +0100 (jeu., 12 déc. 2019) | 1 line
125
126trunk: bugfix in ldf_slp_triad, see #1928
127------------------------------------------------------------------------
128r12197 | clem | 2019-12-12 00:46:12 +0100 (jeu., 12 déc. 2019) | 1 line
129
130correct ticket #2349
131------------------------------------------------------------------------
132r12196 | smasson | 2019-12-11 18:13:20 +0100 (mer., 11 déc. 2019) | 1 line
133
134trunk: limit bottom slope to 1/2*e3/e1 in ldf_slp, see #1180
135------------------------------------------------------------------------
136r12194 | smasson | 2019-12-11 17:21:56 +0100 (mer., 11 déc. 2019) | 1 line
137
138trunk: minor bugfix in ldfdyn, see #2265
139------------------------------------------------------------------------
140r12171 | smasson | 2019-12-11 10:36:23 +0100 (mer., 11 déc. 2019) | 1 line
141
142trunk: minor cleaning in sbccpl, see #2313
143------------------------------------------------------------------------
144r12168 | smasson | 2019-12-11 10:16:47 +0100 (mer., 11 déc. 2019) | 1 line
145
146trunk: minor bugfix in sbcrfn, see #2340
147------------------------------------------------------------------------
148r12158 | jchanut | 2019-12-10 16:33:19 +0100 (mar., 10 déc. 2019) | 2 lines
149
150#2130, correct initial day if not starting at 00Z
151
152------------------------------------------------------------------------
153r12148 | smasson | 2019-12-10 14:59:27 +0100 (mar., 10 déc. 2019) | 1 line
154
155trunk: minor bugfix in bdyvol, see #2345
156------------------------------------------------------------------------
157r12142 | smasson | 2019-12-10 12:50:13 +0100 (mar., 10 déc. 2019) | 1 line
158
159trunk: minor bugfix in bdyini, see #2342
160------------------------------------------------------------------------
161r12141 | smasson | 2019-12-10 12:43:20 +0100 (mar., 10 déc. 2019) | 1 line
162
163trunk: minor bugfix in divhor, see #2347
164------------------------------------------------------------------------
165r12138 | smasson | 2019-12-10 12:26:06 +0100 (mar., 10 déc. 2019) | 1 line
166
167trunk: minor AGRIF bugfix, see #2322
168------------------------------------------------------------------------
169r12137 | smasson | 2019-12-10 12:23:47 +0100 (mar., 10 déc. 2019) | 1 line
170
171trunk: missing part of commit [12132]
172------------------------------------------------------------------------
173r12136 | cetlod | 2019-12-10 11:57:36 +0100 (mar., 10 déc. 2019) | 1 line
174
175TOP updates
176------------------------------------------------------------------------
177r12132 | smasson | 2019-12-10 11:38:28 +0100 (mar., 10 déc. 2019) | 1 line
178
179trunk: coupling interface bugfixes, part 1
180------------------------------------------------------------------------
181r12121 | cetlod | 2019-12-09 12:19:22 +0100 (lun., 09 déc. 2019) | 1 line
182
183trunk:revert commit on changeset 12025
184------------------------------------------------------------------------
185r12072 | jchanut | 2019-12-05 16:07:50 +0100 (jeu., 05 déc. 2019) | 2 lines
186
187#2346, correct lbc call for depths
188
189------------------------------------------------------------------------
190r12055 | jchanut | 2019-12-04 17:20:14 +0100 (mer., 04 déc. 2019) | 2 lines
191
192#2327
193
194------------------------------------------------------------------------
195r12052 | jchanut | 2019-12-04 16:59:19 +0100 (mer., 04 déc. 2019) | 2 lines
196
197#2335, add missing lbc call with wad
198
199------------------------------------------------------------------------
200r12049 | jchanut | 2019-12-04 16:36:36 +0100 (mer., 04 déc. 2019) | 2 lines
201
202#2334, bdy init from initial T/S
203
204------------------------------------------------------------------------
205r12026 | davestorkey | 2019-12-02 15:54:57 +0100 (lun., 02 déc. 2019) | 4 lines
206
207Small bug fixes to to initial Euler timestep and OFF timestepping to ensure
208bit comparison the IMMERSE_first_steps branch with the trunk.
209Tickets #2310, #2311, #2343 apply.
210
211------------------------------------------------------------------------
212r12025 | cetlod | 2019-12-02 14:41:09 +0100 (lun., 02 déc. 2019) | 1 line
213
214Put back original namelist ice values of trunk revision 11640
215------------------------------------------------------------------------
216r11993 | cetlod | 2019-11-28 11:20:53 +0100 (jeu., 28 nov. 2019) | 1 line
217
218trunk : undo bad commit. Oups
219------------------------------------------------------------------------
220r11989 | cetlod | 2019-11-27 16:13:52 +0100 (mer., 27 nov. 2019) | 1 line
221
222cmip6 diag : finalisation of CMIP6 diags implementation
223------------------------------------------------------------------------
224r11907 | nicolasmartin | 2019-11-14 18:15:03 +0100 (jeu., 14 nov. 2019) | 2 lines
225
226Implementation of syntax highlighting for inline code
227
228------------------------------------------------------------------------
229r11899 | smasson | 2019-11-13 18:14:14 +0100 (mer., 13 nov. 2019) | 1 line
230
231trunk: bugfix in usrdef_nam.F90 for CANAL test case
232------------------------------------------------------------------------
233r11891 | smasson | 2019-11-12 16:17:18 +0100 (mar., 12 nov. 2019) | 1 line
234
235trunk: bugfix of [11879], see #2230
236------------------------------------------------------------------------
237r11879 | smasson | 2019-11-08 21:36:58 +0100 (ven., 08 nov. 2019) | 1 line
238
239trunk: fix in bdydta, same results but prevents that all subdomains read all bdy
240------------------------------------------------------------------------
241r11848 | jchanut | 2019-11-04 11:48:01 +0100 (lun., 04 nov. 2019) | 2 lines
242
2431) Correct typo in OVERFLOW namelists 2) add implicit vertical advection in default namelist (so that it runs with 4th order advection)
244
245------------------------------------------------------------------------
246r11821 | acc | 2019-10-29 11:08:08 +0100 (mar., 29 oct. 2019) | 1 line
247
248Small correction to trcbdy.F90. This fixes #2324
249------------------------------------------------------------------------
250r11818 | jchanut | 2019-10-29 10:23:50 +0100 (mar., 29 oct. 2019) | 2 lines
251
252Fixes to compile with gcc 9.2
253
254------------------------------------------------------------------------
255r11814 | smasson | 2019-10-28 11:18:41 +0100 (lun., 28 oct. 2019) | 1 line
256
257trunk: fix typo in namsbc_cpl
258------------------------------------------------------------------------
259r11812 | smasson | 2019-10-28 11:14:40 +0100 (lun., 28 oct. 2019) | 1 line
260
261trunk: add missing USE phycst in icedyn_adv_pra, needed when not using key_iomput
262------------------------------------------------------------------------
263r11793 | jchanut | 2019-10-25 12:25:20 +0200 (ven., 25 oct. 2019) | 2 lines
264
265#2321, missing init for online vertical interpolation of bdy data
266
267------------------------------------------------------------------------
268r11792 | gsamson | 2019-10-25 12:16:21 +0200 (ven., 25 oct. 2019) | 1 line
269
270update namelist_ice_cfg in AGRIF_DEMO cfg as in ORCA2_ICE_PISCES cfg to pass AGRIF-ORCA2 corruption tests in SETTE
271------------------------------------------------------------------------
272r11780 | nicolasmartin | 2019-10-23 18:08:23 +0200 (mer., 23 oct. 2019) | 3 lines
273
274Define fortran as the default language for code highlighting
275So we only have to define the language in a `code-block` directive for others.
276
277------------------------------------------------------------------------
278r11761 | nicolasmartin | 2019-10-22 12:02:46 +0200 (mar., 22 oct. 2019) | 2 lines
279
280Create ''unpub'' folder for unpublished READMEs (displayed with `make drafthtml`)
281
282------------------------------------------------------------------------
283r11759 | nicolasmartin | 2019-10-21 18:24:58 +0200 (lun., 21 oct. 2019) | 2 lines
284
285Review README for data assimilation
286
287------------------------------------------------------------------------
288r11754 | nicolasmartin | 2019-10-21 16:25:22 +0200 (lun., 21 oct. 2019) | 2 lines
289
290Review README for coupling
291
292------------------------------------------------------------------------
293r11753 | nicolasmartin | 2019-10-21 16:21:17 +0200 (lun., 21 oct. 2019) | 2 lines
294
295Review README for AGRIF
296
297------------------------------------------------------------------------
298r11752 | nicolasmartin | 2019-10-21 16:08:43 +0200 (lun., 21 oct. 2019) | 2 lines
299
300Improve the view of todo items by adding the list in the TOC tree
301
302------------------------------------------------------------------------
303r11747 | nicolasmartin | 2019-10-21 15:21:48 +0200 (lun., 21 oct. 2019) | 2 lines
304
305Review README for diagnostics
306
307------------------------------------------------------------------------
308r11745 | nicolasmartin | 2019-10-21 15:00:40 +0200 (lun., 21 oct. 2019) | 2 lines
309
310Create symbolic link ''setup.rst'' to ''README'' in `./src/OCE/USR`
311
312------------------------------------------------------------------------
313r11743 | nicolasmartin | 2019-10-21 14:57:14 +0200 (lun., 21 oct. 2019) | 2 lines
314
315Review README for configuration setup
316
317------------------------------------------------------------------------
318r11735 | nicolasmartin | 2019-10-18 19:50:58 +0200 (ven., 18 oct. 2019) | 2 lines
319
320Review README for test cases (a gif file mentioned to illustrate CANAL is missing)
321
322------------------------------------------------------------------------
323r11734 | nicolasmartin | 2019-10-18 18:46:26 +0200 (ven., 18 oct. 2019) | 2 lines
324
325Review README for reference confgiurations
326
327------------------------------------------------------------------------
328r11732 | clem | 2019-10-18 18:10:30 +0200 (ven., 18 oct. 2019) | 1 line
329
330update trunk from #11730
331------------------------------------------------------------------------
332r11731 | clem | 2019-10-18 18:06:28 +0200 (ven., 18 oct. 2019) | 1 line
333
334update trunk from #11729
335------------------------------------------------------------------------
336r11727 | nicolasmartin | 2019-10-18 17:19:36 +0200 (ven., 18 oct. 2019) | 2 lines
337
338Crop caption for AGRIF_DEMO illustration
339
340------------------------------------------------------------------------
341r11725 | nicolasmartin | 2019-10-18 16:38:13 +0200 (ven., 18 oct. 2019) | 2 lines
342
343Add NOAA picture of PAPA ocean station
344
345------------------------------------------------------------------------
346r11724 | nicolasmartin | 2019-10-18 16:34:50 +0200 (ven., 18 oct. 2019) | 2 lines
347
348Add image of AMM domain bathymetry extract from Enda's reference paper
349
350------------------------------------------------------------------------
351r11723 | nicolasmartin | 2019-10-18 14:33:36 +0200 (ven., 18 oct. 2019) | 2 lines
352
353Review of INSTALL.rst
354
355------------------------------------------------------------------------
356r11718 | nicolasmartin | 2019-10-18 12:03:11 +0200 (ven., 18 oct. 2019) | 3 lines
357
358Rename symlinks to rst files
359Shortening the internal link syntax with :doc: and making it much readable
360
361------------------------------------------------------------------------
362r11713 | nicolasmartin | 2019-10-17 17:49:19 +0200 (jeu., 17 oct. 2019) | 12 lines
363
364Revamp TOP README and implement a TODO list
365Review `tracers.rst` by adding snippets of source files
366Add ''drafthtml'' target for Makefile related to ''draft'' building tag for sphinx-build to
367display todo items at the top of the guide homepage
368
369Misc:
370- Use dedicated `:file:` role instead of ```...``` for file or directory
371- Update BibTeX entries of NEMO reference publications by using `:title:` role
372- Dump of `RELEASE_NOTES.rst`
373- New file `todos.rst` to list all items declared with `todo` directive
374- Modify `conf.py` to add a conditional test for ''draft'' tag
375
376------------------------------------------------------------------------
377r11711 | nicolasmartin | 2019-10-17 12:06:25 +0200 (jeu., 17 oct. 2019) | 2 lines
378
379Remove external definition to bibtool.rsc for trunk and 4.0.1
380
381------------------------------------------------------------------------
382r11708 | nicolasmartin | 2019-10-16 11:13:01 +0200 (mer., 16 oct. 2019) | 2 lines
383
384z
385
386------------------------------------------------------------------------
387r11707 | nicolasmartin | 2019-10-16 11:05:06 +0200 (mer., 16 oct. 2019) | 4 lines
388
389Review of the rst content
390In short, new `citations.rst` to have a distinct page for NEMO references and
391an update of the global directives
392
393------------------------------------------------------------------------
394r11706 | nicolasmartin | 2019-10-16 10:51:40 +0200 (mer., 16 oct. 2019) | 5 lines
395
396Update files to be compliant with Python 3 (Python 2 no longer available)
397The compilation of the guide is no longer easy with Python 2 with the need of virtual env to
398downgrade some dependencies. \\
399Last but not least, Python 2 support will expire by the end of the year.
400
401------------------------------------------------------------------------
402r11703 | nicolasmartin | 2019-10-14 18:33:28 +0200 (lun., 14 oct. 2019) | 2 lines
403
404Update as well the manual namelists
405
406------------------------------------------------------------------------
407r11702 | nicolasmartin | 2019-10-14 17:51:45 +0200 (lun., 14 oct. 2019) | 2 lines
408
409Restore default path for FontAwesome using in the manual compilation
410
411------------------------------------------------------------------------
412
413#######
414Changes
415#######
416
417M       cfgs/AGRIF_DEMO/cpp_AGRIF_DEMO.fcm
418M       cfgs/AGRIF_DEMO/EXPREF/1_context_nemo.xml
419M       cfgs/AGRIF_DEMO/EXPREF/1_namelist_cfg
420M       cfgs/AGRIF_DEMO/EXPREF/2_context_nemo.xml
421M       cfgs/AGRIF_DEMO/EXPREF/2_namelist_cfg
422M       cfgs/AGRIF_DEMO/EXPREF/3_context_nemo.xml
423M       cfgs/AGRIF_DEMO/EXPREF/3_namelist_cfg
424D       cfgs/AGRIF_DEMO/EXPREF/axis_def_nemo.xml
425M       cfgs/AGRIF_DEMO/EXPREF/context_nemo.xml
426M       cfgs/AGRIF_DEMO/EXPREF/namelist_cfg
427M       cfgs/AGRIF_DEMO/EXPREF/namelist_ice_cfg
428A       cfgs/AGRIF_DEMO/MY_SRC
429M       cfgs/AGRIF_DEMO/README.rst
430D       cfgs/AMM12/EXPREF/axis_def_nemo.xml
431M       cfgs/AMM12/EXPREF/context_nemo.xml
432M       cfgs/AMM12/EXPREF/file_def_nemo-oce.xml
433M       cfgs/AMM12/EXPREF/namelist_cfg
434D       cfgs/C1D_PAPA/EXPREF/axis_def_nemo.xml
435M       cfgs/C1D_PAPA/EXPREF/context_nemo.xml
436M       cfgs/C1D_PAPA/EXPREF/namelist_cfg
437D       cfgs/GYRE_BFM/EXPREF/axis_def_nemo.xml
438M       cfgs/GYRE_BFM/EXPREF/context_nemo.xml
439M       cfgs/GYRE_BFM/EXPREF/namelist_cfg
440D       cfgs/GYRE_PISCES/EXPREF/axis_def_nemo.xml
441M       cfgs/GYRE_PISCES/EXPREF/context_nemo.xml
442M       cfgs/GYRE_PISCES/EXPREF/namelist_cfg
443D       cfgs/ORCA2_ICE_PISCES/EXPREF/axis_def_nemo.xml
444M       cfgs/ORCA2_ICE_PISCES/EXPREF/context_nemo.xml
445M       cfgs/ORCA2_ICE_PISCES/EXPREF/file_def_nemo-ice.xml
446M       cfgs/ORCA2_ICE_PISCES/EXPREF/file_def_nemo-oce.xml
447M       cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_cfg
448M       cfgs/ORCA2_ICE_PISCES/EXPREF/namelist_ice_cfg
449A       cfgs/ORCA2_ICE_PISCES/MY_SRC
450D       cfgs/ORCA2_OFF_PISCES/EXPREF/axis_def_nemo.xml
451M       cfgs/ORCA2_OFF_PISCES/EXPREF/context_nemo.xml
452D       cfgs/ORCA2_OFF_PISCES/EXPREF/file_def_nemo-pisces.xml
453A       cfgs/ORCA2_OFF_PISCES/EXPREF/file_def_nemo.xml
454M       cfgs/ORCA2_OFF_PISCES/EXPREF/namelist_cfg
455D       cfgs/ORCA2_OFF_TRC/EXPREF/axis_def_nemo.xml
456M       cfgs/ORCA2_OFF_TRC/EXPREF/context_nemo.xml
457D       cfgs/ORCA2_OFF_TRC/EXPREF/file_def_nemo-innerttrc.xml
458A       cfgs/ORCA2_OFF_TRC/EXPREF/file_def_nemo.xml
459M       cfgs/ORCA2_OFF_TRC/EXPREF/namelist_cfg
460D       cfgs/ORCA2_SAS_ICE/EXPREF/axis_def_nemo.xml
461M       cfgs/ORCA2_SAS_ICE/EXPREF/context_nemo.xml
462M       cfgs/ORCA2_SAS_ICE/EXPREF/namelist_cfg
463A       cfgs/ORCA2_SAS_ICE/MY_SRC
464M       cfgs/README.rst
465D       cfgs/SHARED/axis_def_nemo.xml
466M       cfgs/SHARED/domain_def_nemo.xml
467M       cfgs/SHARED/field_def_nemo-ice.xml
468M       cfgs/SHARED/field_def_nemo-oce.xml
469M       cfgs/SHARED/field_def_nemo-pisces.xml
470M       cfgs/SHARED/grid_def_nemo.xml
471M       cfgs/SHARED/namelist_ice_ref
472M       cfgs/SHARED/namelist_ref
473M       cfgs/SHARED/README.rst
474D       cfgs/SPITZ12/EXPREF/axis_def_nemo.xml
475M       cfgs/SPITZ12/EXPREF/context_nemo.xml
476M       cfgs/SPITZ12/EXPREF/namelist_cfg
477M       cfgs/SPITZ12/EXPREF/namelist_ice_cfg
478A       cfgs/SPITZ12/MY_SRC
479M       CHANGES
480D       CHANGES.rst
481M       CONTRIBUTING.rst
482M       doc/latex/global/document.tex
483M       doc/latex/global/frontpage.tex
484M       doc/latex/global/latexmk.pl
485M       doc/latex/global/new_cmds.tex
486M       doc/latex/global/packages.tex
487M       doc/latex/global/styles.tex
488M       doc/latex/NEMO/subfiles/apdx_triads.tex
489M       doc/latex/NEMO/subfiles/chap_DIA.tex
490M       doc/latex/NEMO/subfiles/chap_OBS.tex
491M       doc/latex/NEMO/subfiles/chap_ZDF.tex
492M       doc/latex/SI3/namelists/namdyn_adv
493M       doc/latex/TOP/subfiles/model_description.tex
494M       doc/manual_build.sh
495M       doc/namelists/nambdy
496M       doc/namelists/nambdy_dta
497M       doc/namelists/namberg
498M       doc/namelists/namc1d_uvd
499M       doc/namelists/namdia
500M       doc/namelists/nam_diadct
501M       doc/namelists/nam_diaharm
502A       doc/namelists/nam_diatmb
503M       doc/namelists/namdta_dyn
504M       doc/namelists/namdyn
505M       doc/namelists/namdyn_adv
506M       doc/namelists/namini
507M       doc/namelists/nammpp
508M       doc/namelists/namobs
509M       doc/namelists/nampisatm
510M       doc/namelists/nampisopt
511M       doc/namelists/nampissbc
512M       doc/namelists/namrun
513M       doc/namelists/namsbc
514M       doc/namelists/namsbc_apr
515M       doc/namelists/namsbc_blk
516M       doc/namelists/namsbc_flx
517M       doc/namelists/namsbc_isf
518M       doc/namelists/namsbc_rnf
519M       doc/namelists/namsbc_sas
520M       doc/namelists/namsbc_ssr
521M       doc/namelists/namsbc_wave
522M       doc/namelists/namtra_qsr
523M       doc/namelists/namtrc_dta
524M       doc/namelists/namtsd
525M       doc/README.rst
526M       doc/rst/Makefile
527M       doc/rst/README.rst
528M       doc/rst/requirements.txt
529D       doc/rst/source/acro.rst
530D       doc/rst/source/cfgs.bib
531D       doc/rst/source/cfgs.rst
532D       doc/rst/source/changes.rst
533D       doc/rst/source/cite.rst
534A       doc/rst/source/coarsening.rst
535A       doc/rst/source/configurations.bib
536A       doc/rst/source/configurations.rst
537M       doc/rst/source/conf.py
538D       doc/rst/source/contrib.rst
539A       doc/rst/source/contributing.rst
540A       doc/rst/source/coupling.rst
541D       doc/rst/source/cplg.rst
542D       doc/rst/source/da.rst
543A       doc/rst/source/data_assimilation.rst
544A       doc/rst/source/definitions.rst
545A       doc/rst/source/diagnostics.rst
546D       doc/rst/source/diags.rst
547D       doc/rst/source/docutils.conf
548M       doc/rst/source/global.rst
549D       doc/rst/source/guide.rst
550A       doc/rst/source/NEMO_guide.rst
551D       doc/rst/source/ref.bib
552A       doc/rst/source/references.bib
553A       doc/rst/source/release_notes.rst
554M       doc/rst/source/setup.rst
555D       doc/rst/source/_static/AGRIF_DEMO_no_cap.jpg
556D       doc/rst/source/_static/AMM_domain.png
557D       doc/rst/source/_static/Papa2015.jpg
558M       doc/rst/source/_static/style.css
559A       doc/rst/source/test_cases.bib
560A       doc/rst/source/test_cases.rst
561D       doc/rst/source/tests.bib
562D       doc/rst/source/tests.rst
563D       doc/rst/source/todos.rst
564D       doc/rst/source/unpub
565D       doc/rst/source/unpub/crs.rst
566D       doc/rst/source/unpub/doc.rst
567D       doc/rst/source/unpub/src.rst
568M       doc/tools/check_pkg.py
569M       doc/tools/shr_func.sh
570M       INSTALL.rst
571M       README.rst
572M       REFERENCES.bib
573A       RELEASE_NOTES.rst
574M       src/ICE/icedyn_adv.F90
575M       src/ICE/icedyn_adv_pra.F90
576M       src/ICE/icedyn_adv_umx.F90
577M       src/ICE/icedyn_rdgrft.F90
578M       src/ICE/iceitd.F90
579M       src/ICE/icevar.F90
580M       src/NST/agrif_user.F90
581M       src/OCE/ASM/README.rst
582M       src/OCE/BDY/bdydta.F90
583M       src/OCE/BDY/bdyini.F90
584M       src/OCE/BDY/bdyvol.F90
585M       src/OCE/CRS/README.rst
586M       src/OCE/DIA/diaar5.F90
587M       src/OCE/DIA/diahth.F90
588M       src/OCE/DIA/diaptr.F90
589A       src/OCE/DIA/diatmb.F90
590M       src/OCE/DIA/diawri.F90
591M       src/OCE/DOM/daymod.F90
592M       src/OCE/DYN/divhor.F90
593M       src/OCE/DYN/dynnxt.F90
594M       src/OCE/DYN/dynspg_ts.F90
595M       src/OCE/DYN/dynzdf.F90
596M       src/OCE/FLO/flodom.F90
597M       src/OCE/FLO/flowri.F90
598M       src/OCE/ICB/icbthm.F90
599M       src/OCE/IOM/iom.F90
600M       src/OCE/LDF/ldfdyn.F90
601M       src/OCE/LDF/ldfslp.F90
602M       src/OCE/LDF/ldftra.F90
603M       src/OCE/nemogcm.F90
604M       src/OCE/OBS/README.rst
605M       src/OCE/SBC/cpl_oasis3.F90
606M       src/OCE/SBC/fldread.F90
607M       src/OCE/SBC/README.rst
608M       src/OCE/SBC/sbcblk.F90
609M       src/OCE/SBC/sbccpl.F90
610M       src/OCE/SBC/sbcisf.F90
611M       src/OCE/SBC/sbcmod.F90
612M       src/OCE/SBC/sbc_oce.F90
613M       src/OCE/SBC/sbcrnf.F90
614M       src/OCE/SBC/sbcssr.F90
615M       src/OCE/step.F90
616M       src/OCE/TRA/eosbn2.F90
617M       src/OCE/TRA/traadv_cen.F90
618M       src/OCE/TRA/traadv.F90
619M       src/OCE/TRA/traadv_fct.F90
620M       src/OCE/TRA/traadv_mus.F90
621M       src/OCE/TRA/traadv_qck.F90
622M       src/OCE/TRA/traadv_ubs.F90
623M       src/OCE/TRA/trabbc.F90
624M       src/OCE/TRA/traldf_iso.F90
625M       src/OCE/TRA/traldf_lap_blp.F90
626M       src/OCE/TRA/traldf_triad.F90
627M       src/OCE/TRA/tranxt.F90
628D       src/OCE/USR/README.rst
629A       src/OCE/USR/README-setup-configs
630M       src/OFF/nemogcm.F90
631D       src/README.rst
632M       src/SAS/README.rst
633M       src/TOP/CFC/trcsms_cfc.F90
634M       src/TOP/PISCES/P4Z/p4zfechem.F90
635M       src/TOP/PISCES/P4Z/p4zflx.F90
636M       src/TOP/PISCES/P4Z/p4zligand.F90
637M       src/TOP/PISCES/P4Z/p4zlim.F90
638M       src/TOP/PISCES/P4Z/p4zlys.F90
639M       src/TOP/PISCES/P4Z/p4zmeso.F90
640M       src/TOP/PISCES/P4Z/p4zmicro.F90
641M       src/TOP/PISCES/P4Z/p4zopt.F90
642M       src/TOP/PISCES/P4Z/p4zprod.F90
643M       src/TOP/PISCES/P4Z/p4zrem.F90
644M       src/TOP/PISCES/P4Z/p4zsed.F90
645M       src/TOP/PISCES/P4Z/p4zsink.F90
646M       src/TOP/PISCES/P4Z/p4zsms.F90
647M       src/TOP/PISCES/P4Z/p5zlim.F90
648M       src/TOP/PISCES/P4Z/p5zmeso.F90
649M       src/TOP/PISCES/P4Z/p5zmicro.F90
650M       src/TOP/PISCES/P4Z/p5zprod.F90
651M       src/TOP/README.rst
652M       src/TOP/trcbdy.F90
653M       src/TOP/trcini.F90
654M       src/TOP/trcstp.F90
655M       src/TOP/trcwri.F90
656M       src/TOP/TRP/trcnxt.F90
657D       tests/CANAL/EXPREF/axis_def_nemo.xml
658M       tests/CANAL/EXPREF/context_nemo.xml
659M       tests/CANAL/EXPREF/field_def_nemo-oce.xml
660M       tests/CANAL/EXPREF/namelist_cfg
661M       tests/CANAL/MY_SRC/diawri.F90
662M       tests/CANAL/MY_SRC/usrdef_nam.F90
663D       tests/ICE_ADV1D/EXPREF/axis_def_nemo.xml
664M       tests/ICE_ADV1D/EXPREF/context_nemo.xml
665M       tests/ICE_ADV1D/EXPREF/namelist_cfg
666M       tests/ICE_ADV1D/EXPREF/namelist_cfg_120pts
667M       tests/ICE_ADV1D/EXPREF/namelist_cfg_240pts
668M       tests/ICE_ADV1D/EXPREF/namelist_cfg_60pts
669D       tests/ICE_ADV2D/EXPREF/axis_def_nemo.xml
670M       tests/ICE_ADV2D/EXPREF/context_nemo.xml
671M       tests/ICE_ADV2D/EXPREF/namelist_cfg
672M       tests/ICE_AGRIF/EXPREF/1_namelist_cfg
673D       tests/ICE_AGRIF/EXPREF/axis_def_nemo.xml
674M       tests/ICE_AGRIF/EXPREF/context_nemo.xml
675M       tests/ICE_AGRIF/EXPREF/namelist_cfg
676D       tests/ISOMIP/EXPREF/axis_def_nemo.xml
677M       tests/ISOMIP/EXPREF/context_nemo.xml
678M       tests/ISOMIP/EXPREF/namelist_cfg
679D       tests/LOCK_EXCHANGE/EXPREF/axis_def_nemo.xml
680M       tests/LOCK_EXCHANGE/EXPREF/context_nemo.xml
681M       tests/LOCK_EXCHANGE/EXPREF/namelist_FCT2_flux_ubs_cfg
682D       tests/OVERFLOW/EXPREF/axis_def_nemo.xml
683M       tests/OVERFLOW/EXPREF/context_nemo.xml
684M       tests/OVERFLOW/EXPREF/namelist_sco_FCT2_flux_cen-ahm1000_cfg
685M       tests/OVERFLOW/EXPREF/namelist_sco_FCT2_flux_ubs_cfg
686M       tests/OVERFLOW/EXPREF/namelist_sco_FCT4_flux_ubs_cfg
687M       tests/OVERFLOW/EXPREF/namelist_zps_FCT2_flux_ubs_cfg
688M       tests/OVERFLOW/EXPREF/namelist_zps_FCT4_flux_ubs_cfg
689M       tests/OVERFLOW/EXPREF/namelist_zps_FCT4_vect_een_cfg
690M       tests/README.rst
691M       tests/VORTEX/cpp_VORTEX.fcm
692M       tests/VORTEX/EXPREF/1_context_nemo.xml
693M       tests/VORTEX/EXPREF/1_namelist_cfg
694D       tests/VORTEX/EXPREF/axis_def_nemo.xml
695M       tests/VORTEX/EXPREF/context_nemo.xml
696M       tests/VORTEX/EXPREF/namelist_cfg
697D       tests/WAD/EXPREF/axis_def_nemo.xml
698M       tests/WAD/EXPREF/context_nemo.xml
699M       tests/WAD/EXPREF/namelist_cfg
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