[2496] | 1 | MODULE nemogcm |
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[2442] | 2 | !!====================================================================== |
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[2496] | 3 | !! *** MODULE nemogcm *** |
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| 4 | !! Ocean system : NEMO GCM (ocean dynamics, on-line tracers, biochemistry and sea-ice) |
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[2442] | 5 | !!====================================================================== |
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[1593] | 6 | !! History : OPA ! 1990-10 (C. Levy, G. Madec) Original code |
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| 7 | !! 7.0 ! 1991-11 (M. Imbard, C. Levy, G. Madec) |
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[3764] | 8 | !! 7.1 ! 1993-03 (M. Imbard, C. Levy, G. Madec, O. Marti, M. Guyon, A. Lazar, |
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| 9 | !! P. Delecluse, C. Perigaud, G. Caniaux, B. Colot, C. Maes) release 7.1 |
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[1593] | 10 | !! - ! 1992-06 (L.Terray) coupling implementation |
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[3764] | 11 | !! - ! 1993-11 (M.A. Filiberti) IGLOO sea-ice |
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| 12 | !! 8.0 ! 1996-03 (M. Imbard, C. Levy, G. Madec, O. Marti, M. Guyon, A. Lazar, |
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[2104] | 13 | !! P. Delecluse, L.Terray, M.A. Filiberti, J. Vialar, A.M. Treguier, M. Levy) release 8.0 |
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[1593] | 14 | !! 8.1 ! 1997-06 (M. Imbard, G. Madec) |
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[9656] | 15 | !! 8.2 ! 1999-11 (M. Imbard, H. Goosse) sea-ice model |
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[3764] | 16 | !! ! 1999-12 (V. Thierry, A-M. Treguier, M. Imbard, M-A. Foujols) OPEN-MP |
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[1593] | 17 | !! ! 2000-07 (J-M Molines, M. Imbard) Open Boundary Conditions (CLIPPER) |
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| 18 | !! NEMO 1.0 ! 2002-08 (G. Madec) F90: Free form and modules |
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| 19 | !! - ! 2004-06 (R. Redler, NEC CCRLE, Germany) add OASIS[3/4] coupled interfaces |
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| 20 | !! - ! 2004-08 (C. Talandier) New trends organization |
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| 21 | !! - ! 2005-06 (C. Ethe) Add the 1D configuration possibility |
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| 22 | !! - ! 2005-11 (V. Garnier) Surface pressure gradient organization |
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| 23 | !! - ! 2006-03 (L. Debreu, C. Mazauric) Agrif implementation |
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| 24 | !! - ! 2006-04 (G. Madec, R. Benshila) Step reorganization |
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| 25 | !! - ! 2007-07 (J. Chanut, A. Sellar) Unstructured open boundaries (BDY) |
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| 26 | !! 3.2 ! 2009-08 (S. Masson) open/write in the listing file in mpp |
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[3764] | 27 | !! 3.3 ! 2010-05 (K. Mogensen, A. Weaver, M. Martin, D. Lea) Assimilation interface |
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[2236] | 28 | !! - ! 2010-10 (C. Ethe, G. Madec) reorganisation of initialisation phase |
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[3294] | 29 | !! 3.3.1! 2011-01 (A. R. Porter, STFC Daresbury) dynamical allocation |
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[5836] | 30 | !! - ! 2011-11 (C. Harris) decomposition changes for running with CICE |
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| 31 | !! 3.6 ! 2012-05 (C. Calone, J. Simeon, G. Madec, C. Ethe) Add grid coarsening |
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| 32 | !! - ! 2014-12 (G. Madec) remove KPP scheme and cross-land advection (cla) |
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[7646] | 33 | !! 4.0 ! 2016-10 (G. Madec, S. Flavoni) domain configuration / user defined interface |
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[1593] | 34 | !!---------------------------------------------------------------------- |
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[3] | 35 | |
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| 36 | !!---------------------------------------------------------------------- |
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[6140] | 37 | !! nemo_gcm : solve ocean dynamics, tracer, biogeochemistry and/or sea-ice |
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| 38 | !! nemo_init : initialization of the NEMO system |
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| 39 | !! nemo_ctl : initialisation of the contol print |
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| 40 | !! nemo_closefile: close remaining open files |
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| 41 | !! nemo_alloc : dynamical allocation |
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[3] | 42 | !!---------------------------------------------------------------------- |
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[6140] | 43 | USE step_oce ! module used in the ocean time stepping module (step.F90) |
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[7646] | 44 | USE phycst ! physical constant (par_cst routine) |
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| 45 | USE domain ! domain initialization (dom_init & dom_cfg routines) |
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[9161] | 46 | USE closea ! treatment of closed seas (for ln_closea) |
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[7646] | 47 | USE usrdef_nam ! user defined configuration |
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[12377] | 48 | USE tide_mod, ONLY : tide_init ! tidal components initialization (tide_init routine) |
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[9019] | 49 | USE bdy_oce, ONLY : ln_bdy |
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[6140] | 50 | USE bdyini ! open boundary cond. setting (bdy_init routine) |
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| 51 | USE istate ! initial state setting (istate_init routine) |
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| 52 | USE ldfdyn ! lateral viscosity setting (ldfdyn_init routine) |
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| 53 | USE ldftra ! lateral diffusivity setting (ldftra_init routine) |
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| 54 | USE trdini ! dyn/tra trends initialization (trd_init routine) |
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| 55 | USE asminc ! assimilation increments |
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| 56 | USE asmbkg ! writing out state trajectory |
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| 57 | USE diaptr ! poleward transports (dia_ptr_init routine) |
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| 58 | USE diadct ! sections transports (dia_dct_init routine) |
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| 59 | USE diaobs ! Observation diagnostics (dia_obs_init routine) |
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| 60 | USE diacfl ! CFL diagnostics (dia_cfl_init routine) |
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[12377] | 61 | USE diamlr ! IOM context management for multiple-linear-regression analysis |
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[6140] | 62 | USE step ! NEMO time-stepping (stp routine) |
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[12377] | 63 | USE isfstp ! ice shelf (isf_stp_init routine) |
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[6140] | 64 | USE icbini ! handle bergs, initialisation |
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| 65 | USE icbstp ! handle bergs, calving, themodynamics and transport |
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| 66 | USE cpl_oasis3 ! OASIS3 coupling |
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| 67 | USE c1d ! 1D configuration |
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| 68 | USE step_c1d ! Time stepping loop for the 1D configuration |
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| 69 | USE dyndmp ! Momentum damping |
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| 70 | USE stopar ! Stochastic param.: ??? |
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| 71 | USE stopts ! Stochastic param.: ??? |
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[12377] | 72 | USE diu_layers ! diurnal bulk SST and coolskin |
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[7646] | 73 | USE step_diu ! diurnal bulk SST timestepping (called from here if run offline) |
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| 74 | USE crsini ! initialise grid coarsening utility |
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[12214] | 75 | USE dia25h ! 25h mean output |
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[12377] | 76 | USE diadetide ! Weights computation for daily detiding of model diagnostics |
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[7646] | 77 | USE sbc_oce , ONLY : lk_oasis |
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| 78 | USE wet_dry ! Wetting and drying setting (wad_init routine) |
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[1594] | 79 | #if defined key_top |
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[6140] | 80 | USE trcini ! passive tracer initialisation |
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[1594] | 81 | #endif |
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[7646] | 82 | #if defined key_nemocice_decomp |
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| 83 | USE ice_domain_size, only: nx_global, ny_global |
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| 84 | #endif |
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| 85 | ! |
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[12641] | 86 | USE in_out_manager ! I/O manager |
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[6140] | 87 | USE lib_mpp ! distributed memory computing |
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[7646] | 88 | USE mppini ! shared/distributed memory setting (mpp_init routine) |
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[9213] | 89 | USE lbcnfd , ONLY : isendto, nsndto, nfsloop, nfeloop ! Setup of north fold exchanges |
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[7646] | 90 | USE lib_fortran ! Fortran utilities (allows no signed zero when 'key_nosignedzero' defined) |
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[1412] | 91 | #if defined key_iomput |
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[6140] | 92 | USE xios ! xIOserver |
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[1359] | 93 | #endif |
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[9780] | 94 | #if defined key_agrif |
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| 95 | USE agrif_all_update ! Master Agrif update |
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| 96 | #endif |
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[268] | 97 | |
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[2715] | 98 | IMPLICIT NONE |
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[3] | 99 | PRIVATE |
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| 100 | |
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[2496] | 101 | PUBLIC nemo_gcm ! called by model.F90 |
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| 102 | PUBLIC nemo_init ! needed by AGRIF |
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[3764] | 103 | PUBLIC nemo_alloc ! needed by TAM |
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[467] | 104 | |
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[2498] | 105 | CHARACTER(lc) :: cform_aaa="( /, 'AAAAAAAA', / ) " ! flag for output listing |
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[1593] | 106 | |
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[10425] | 107 | #if defined key_mpp_mpi |
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[11536] | 108 | ! need MPI_Wtime |
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[10425] | 109 | INCLUDE 'mpif.h' |
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| 110 | #endif |
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| 111 | |
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[3] | 112 | !!---------------------------------------------------------------------- |
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[9570] | 113 | !! NEMO/OCE 4.0 , NEMO Consortium (2018) |
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[2392] | 114 | !! $Id$ |
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[10068] | 115 | !! Software governed by the CeCILL license (see ./LICENSE) |
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[3] | 116 | !!---------------------------------------------------------------------- |
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| 117 | CONTAINS |
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| 118 | |
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[2496] | 119 | SUBROUTINE nemo_gcm |
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[3] | 120 | !!---------------------------------------------------------------------- |
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[2496] | 121 | !! *** ROUTINE nemo_gcm *** |
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[3] | 122 | !! |
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[3764] | 123 | !! ** Purpose : NEMO solves the primitive equations on an orthogonal |
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[1593] | 124 | !! curvilinear mesh on the sphere. |
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[3] | 125 | !! |
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| 126 | !! ** Method : - model general initialization |
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| 127 | !! - launch the time-stepping (stp routine) |
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[1593] | 128 | !! - finalize the run by closing files and communications |
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[3] | 129 | !! |
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[2715] | 130 | !! References : Madec, Delecluse, Imbard, and Levy, 1997: internal report, IPSL. |
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[1593] | 131 | !! Madec, 2008, internal report, IPSL. |
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[3] | 132 | !!---------------------------------------------------------------------- |
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[7646] | 133 | INTEGER :: istp ! time step index |
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[11536] | 134 | REAL(wp):: zstptiming ! elapsed time for 1 time step |
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[389] | 135 | !!---------------------------------------------------------------------- |
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[2382] | 136 | ! |
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[392] | 137 | #if defined key_agrif |
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[1593] | 138 | CALL Agrif_Init_Grids() ! AGRIF: set the meshes |
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[389] | 139 | #endif |
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[1593] | 140 | ! !-----------------------! |
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[2496] | 141 | CALL nemo_init !== Initialisations ==! |
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[1593] | 142 | ! !-----------------------! |
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[2715] | 143 | #if defined key_agrif |
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[12377] | 144 | Kbb_a = Nbb; Kmm_a = Nnn; Krhs_a = Nrhs ! agrif_oce module copies of time level indices |
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[13216] | 145 | CALL Agrif_Declare_Var ! " " " " " DYN/TRA |
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[2715] | 146 | # if defined key_top |
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[3680] | 147 | CALL Agrif_Declare_Var_top ! " " " " " TOP |
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[2715] | 148 | # endif |
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| 149 | #endif |
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[682] | 150 | ! check that all process are still there... If some process have an error, |
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| 151 | ! they will never enter in step and other processes will wait until the end of the cpu time! |
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[10425] | 152 | CALL mpp_max( 'nemogcm', nstop ) |
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[682] | 153 | |
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[1593] | 154 | IF(lwp) WRITE(numout,cform_aaa) ! Flag AAAAAAA |
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| 155 | |
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| 156 | ! !-----------------------! |
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| 157 | ! !== time stepping ==! |
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| 158 | ! !-----------------------! |
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[12489] | 159 | ! |
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| 160 | ! !== set the model time-step ==! |
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| 161 | ! |
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[900] | 162 | istp = nit000 |
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[9210] | 163 | ! |
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[2236] | 164 | #if defined key_c1d |
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[9210] | 165 | DO WHILE ( istp <= nitend .AND. nstop == 0 ) !== C1D time-stepping ==! |
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| 166 | CALL stp_c1d( istp ) |
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| 167 | istp = istp + 1 |
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| 168 | END DO |
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[2236] | 169 | #else |
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[9210] | 170 | ! |
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| 171 | # if defined key_agrif |
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| 172 | ! !== AGRIF time-stepping ==! |
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| 173 | CALL Agrif_Regrid() |
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[9213] | 174 | ! |
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[9780] | 175 | ! Recursive update from highest nested level to lowest: |
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[12377] | 176 | Kbb_a = Nbb; Kmm_a = Nnn; Krhs_a = Nrhs ! agrif_oce module copies of time level indices |
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[9780] | 177 | CALL Agrif_step_child_adj(Agrif_Update_All) |
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| 178 | ! |
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[9210] | 179 | DO WHILE( istp <= nitend .AND. nstop == 0 ) |
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| 180 | CALL stp |
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| 181 | istp = istp + 1 |
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| 182 | END DO |
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| 183 | ! |
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| 184 | # else |
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| 185 | ! |
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| 186 | IF( .NOT.ln_diurnal_only ) THEN !== Standard time-stepping ==! |
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| 187 | ! |
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| 188 | DO WHILE( istp <= nitend .AND. nstop == 0 ) |
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[11536] | 189 | |
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[10425] | 190 | ncom_stp = istp |
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[11536] | 191 | IF( ln_timing ) THEN |
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| 192 | zstptiming = MPI_Wtime() |
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| 193 | IF ( istp == ( nit000 + 1 ) ) elapsed_time = zstptiming |
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| 194 | IF ( istp == nitend ) elapsed_time = zstptiming - elapsed_time |
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| 195 | ENDIF |
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| 196 | |
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[9210] | 197 | CALL stp ( istp ) |
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[389] | 198 | istp = istp + 1 |
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[11536] | 199 | |
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| 200 | IF( lwp .AND. ln_timing ) WRITE(numtime,*) 'timing step ', istp-1, ' : ', MPI_Wtime() - zstptiming |
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| 201 | |
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[389] | 202 | END DO |
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[9210] | 203 | ! |
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| 204 | ELSE !== diurnal SST time-steeping only ==! |
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| 205 | ! |
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| 206 | DO WHILE( istp <= nitend .AND. nstop == 0 ) |
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| 207 | CALL stp_diurnal( istp ) ! time step only the diurnal SST |
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| 208 | istp = istp + 1 |
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| 209 | END DO |
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| 210 | ! |
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| 211 | ENDIF |
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| 212 | ! |
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| 213 | # endif |
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| 214 | ! |
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[2236] | 215 | #endif |
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[9210] | 216 | ! |
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[6140] | 217 | IF( ln_diaobs ) CALL dia_obs_wri |
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[3609] | 218 | ! |
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| 219 | IF( ln_icebergs ) CALL icb_end( nitend ) |
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[3764] | 220 | |
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[1593] | 221 | ! !------------------------! |
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| 222 | ! !== finalize the run ==! |
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| 223 | ! !------------------------! |
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[7646] | 224 | IF(lwp) WRITE(numout,cform_aaa) ! Flag AAAAAAA |
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[1593] | 225 | ! |
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[7646] | 226 | IF( nstop /= 0 .AND. lwp ) THEN ! error print |
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[11536] | 227 | WRITE(ctmp1,*) ' ==>>> nemo_gcm: a total of ', nstop, ' errors have been found' |
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[12933] | 228 | IF( ngrdstop > 0 ) THEN |
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| 229 | WRITE(ctmp9,'(i2)') ngrdstop |
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[13011] | 230 | WRITE(ctmp2,*) ' E R R O R detected in Agrif grid '//TRIM(ctmp9) |
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| 231 | WRITE(ctmp3,*) ' Look for "E R R O R" messages in all existing '//TRIM(ctmp9)//'_ocean_output* files' |
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| 232 | CALL ctl_stop( ' ', ctmp1, ' ', ctmp2, ' ', ctmp3 ) |
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[12933] | 233 | ELSE |
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[13011] | 234 | WRITE(ctmp2,*) ' Look for "E R R O R" messages in all existing ocean_output* files' |
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| 235 | CALL ctl_stop( ' ', ctmp1, ' ', ctmp2 ) |
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[12933] | 236 | ENDIF |
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[389] | 237 | ENDIF |
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[1593] | 238 | ! |
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[9124] | 239 | IF( ln_timing ) CALL timing_finalize |
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[3294] | 240 | ! |
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[2496] | 241 | CALL nemo_closefile |
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[4990] | 242 | ! |
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[3769] | 243 | #if defined key_iomput |
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[9210] | 244 | CALL xios_finalize ! end mpp communications with xios |
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| 245 | IF( lk_oasis ) CALL cpl_finalize ! end coupling and mpp communications with OASIS |
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[532] | 246 | #else |
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[9210] | 247 | IF ( lk_oasis ) THEN ; CALL cpl_finalize ! end coupling and mpp communications with OASIS |
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[13011] | 248 | ELSEIF( lk_mpp ) THEN ; CALL mppstop ! end mpp communications |
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[4990] | 249 | ENDIF |
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[532] | 250 | #endif |
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[900] | 251 | ! |
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[10436] | 252 | IF(lwm) THEN |
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| 253 | IF( nstop == 0 ) THEN ; STOP 0 |
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[11536] | 254 | ELSE ; STOP 123 |
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[10436] | 255 | ENDIF |
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[10425] | 256 | ENDIF |
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| 257 | ! |
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[2496] | 258 | END SUBROUTINE nemo_gcm |
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[389] | 259 | |
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| 260 | |
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[2496] | 261 | SUBROUTINE nemo_init |
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[389] | 262 | !!---------------------------------------------------------------------- |
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[2496] | 263 | !! *** ROUTINE nemo_init *** |
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[389] | 264 | !! |
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[2496] | 265 | !! ** Purpose : initialization of the NEMO GCM |
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[389] | 266 | !!---------------------------------------------------------------------- |
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[11536] | 267 | INTEGER :: ios, ilocal_comm ! local integers |
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[9213] | 268 | !! |
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[12377] | 269 | NAMELIST/namctl/ sn_cfctl, nn_print, nn_ictls, nn_ictle, & |
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[10570] | 270 | & nn_isplt , nn_jsplt, nn_jctls, nn_jctle, & |
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[9019] | 271 | & ln_timing, ln_diacfl |
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[9213] | 272 | NAMELIST/namcfg/ ln_read_cfg, cn_domcfg, ln_closea, ln_write_cfg, cn_domcfg_out, ln_use_jattr |
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[3] | 273 | !!---------------------------------------------------------------------- |
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[1593] | 274 | ! |
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[5407] | 275 | cxios_context = 'nemo' |
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[2496] | 276 | ! |
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[11536] | 277 | ! !-------------------------------------------------! |
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| 278 | ! ! set communicator & select the local rank ! |
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| 279 | ! ! must be done as soon as possible to get narea ! |
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| 280 | ! !-------------------------------------------------! |
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[1593] | 281 | ! |
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[1412] | 282 | #if defined key_iomput |
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[2200] | 283 | IF( Agrif_Root() ) THEN |
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[5407] | 284 | IF( lk_oasis ) THEN |
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[7646] | 285 | CALL cpl_init( "oceanx", ilocal_comm ) ! nemo local communicator given by oasis |
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[11536] | 286 | CALL xios_initialize( "not used" , local_comm =ilocal_comm ) ! send nemo communicator to xios |
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[4990] | 287 | ELSE |
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[11536] | 288 | CALL xios_initialize( "for_xios_mpi_id", return_comm=ilocal_comm ) ! nemo local communicator given by xios |
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[4990] | 289 | ENDIF |
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[2200] | 290 | ENDIF |
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[11536] | 291 | CALL mpp_start( ilocal_comm ) |
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[532] | 292 | #else |
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[5407] | 293 | IF( lk_oasis ) THEN |
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[4990] | 294 | IF( Agrif_Root() ) THEN |
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[7646] | 295 | CALL cpl_init( "oceanx", ilocal_comm ) ! nemo local communicator given by oasis |
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[4990] | 296 | ENDIF |
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[11536] | 297 | CALL mpp_start( ilocal_comm ) |
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[4990] | 298 | ELSE |
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[11536] | 299 | CALL mpp_start( ) |
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[2236] | 300 | ENDIF |
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[532] | 301 | #endif |
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[11536] | 302 | ! |
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| 303 | narea = mpprank + 1 ! mpprank: the rank of proc (0 --> mppsize -1 ) |
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| 304 | lwm = (narea == 1) ! control of output namelists |
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| 305 | ! |
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| 306 | ! !---------------------------------------------------------------! |
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| 307 | ! ! Open output files, reference and configuration namelist files ! |
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| 308 | ! !---------------------------------------------------------------! |
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| 309 | ! |
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| 310 | ! open ocean.output as soon as possible to get all output prints (including errors messages) |
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| 311 | IF( lwm ) CALL ctl_opn( numout, 'ocean.output', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. ) |
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| 312 | ! open reference and configuration namelist files |
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[12377] | 313 | CALL load_nml( numnam_ref, 'namelist_ref', -1, lwm ) |
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| 314 | CALL load_nml( numnam_cfg, 'namelist_cfg', -1, lwm ) |
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[11536] | 315 | IF( lwm ) CALL ctl_opn( numond, 'output.namelist.dyn', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. ) |
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| 316 | ! open /dev/null file to be able to supress output write easily |
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[12641] | 317 | IF( Agrif_Root() ) THEN |
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[11536] | 318 | CALL ctl_opn( numnul, '/dev/null', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. ) |
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[12641] | 319 | #ifdef key_agrif |
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| 320 | ELSE |
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| 321 | numnul = Agrif_Parent(numnul) |
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| 322 | #endif |
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| 323 | ENDIF |
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[11536] | 324 | ! !--------------------! |
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[12377] | 325 | ! ! Open listing units ! -> need sn_cfctl from namctl to define lwp |
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[11536] | 326 | ! !--------------------! |
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| 327 | ! |
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| 328 | READ ( numnam_ref, namctl, IOSTAT = ios, ERR = 901 ) |
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| 329 | 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namctl in reference namelist' ) |
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| 330 | READ ( numnam_cfg, namctl, IOSTAT = ios, ERR = 902 ) |
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| 331 | 902 IF( ios > 0 ) CALL ctl_nam ( ios , 'namctl in configuration namelist' ) |
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| 332 | ! |
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[12377] | 333 | ! finalize the definition of namctl variables |
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[12933] | 334 | IF( narea < sn_cfctl%procmin .OR. narea > sn_cfctl%procmax .OR. MOD( narea - sn_cfctl%procmin, sn_cfctl%procincr ) /= 0 ) & |
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| 335 | & CALL nemo_set_cfctl( sn_cfctl, .FALSE. ) |
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[11536] | 336 | ! |
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[12377] | 337 | lwp = (narea == 1) .OR. sn_cfctl%l_oceout ! control of all listing output print |
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| 338 | ! |
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[11536] | 339 | IF(lwp) THEN ! open listing units |
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[1593] | 340 | ! |
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[11536] | 341 | IF( .NOT. lwm ) & ! alreay opened for narea == 1 |
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| 342 | & CALL ctl_opn( numout, 'ocean.output', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE., narea ) |
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[1593] | 343 | ! |
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[1579] | 344 | WRITE(numout,*) |
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[11536] | 345 | WRITE(numout,*) ' CNRS - NERC - Met OFFICE - MERCATOR-ocean - CMCC' |
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[1593] | 346 | WRITE(numout,*) ' NEMO team' |
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[1579] | 347 | WRITE(numout,*) ' Ocean General Circulation Model' |
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[10510] | 348 | WRITE(numout,*) ' NEMO version 4.0 (2019) ' |
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[1579] | 349 | WRITE(numout,*) |
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[10510] | 350 | WRITE(numout,*) " ._ ._ ._ ._ ._ " |
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| 351 | WRITE(numout,*) " _.-._)`\_.-._)`\_.-._)`\_.-._)`\_.-._)`\_ " |
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[1579] | 352 | WRITE(numout,*) |
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[10510] | 353 | WRITE(numout,*) " o _, _, " |
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| 354 | WRITE(numout,*) " o .' ( .-' / " |
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| 355 | WRITE(numout,*) " o _/..._'. .' / " |
---|
| 356 | WRITE(numout,*) " ( o .-'` ` '-./ _.' " |
---|
| 357 | WRITE(numout,*) " ) ( o) ;= <_ ( " |
---|
| 358 | WRITE(numout,*) " ( '-.,\\__ __.-;`\ '. ) " |
---|
| 359 | WRITE(numout,*) " ) ) \) |`\ \) '. \ ( ( " |
---|
| 360 | WRITE(numout,*) " ( ( \_/ '-._\ ) ) " |
---|
[10583] | 361 | WRITE(numout,*) " ) ) jgs ` ( ( " |
---|
[10510] | 362 | WRITE(numout,*) " ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ " |
---|
| 363 | WRITE(numout,*) |
---|
[1593] | 364 | ! |
---|
[7646] | 365 | WRITE(numout,cform_aaa) ! Flag AAAAAAA |
---|
| 366 | ! |
---|
[473] | 367 | ENDIF |
---|
[10425] | 368 | ! |
---|
[11536] | 369 | IF(lwm) WRITE( numond, namctl ) |
---|
| 370 | ! |
---|
| 371 | ! !------------------------------------! |
---|
| 372 | ! ! Set global domain size parameters ! |
---|
| 373 | ! !------------------------------------! |
---|
| 374 | ! |
---|
| 375 | READ ( numnam_ref, namcfg, IOSTAT = ios, ERR = 903 ) |
---|
| 376 | 903 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namcfg in reference namelist' ) |
---|
| 377 | READ ( numnam_cfg, namcfg, IOSTAT = ios, ERR = 904 ) |
---|
| 378 | 904 IF( ios > 0 ) CALL ctl_nam ( ios , 'namcfg in configuration namelist' ) |
---|
| 379 | ! |
---|
| 380 | IF( ln_read_cfg ) THEN ! Read sizes in domain configuration file |
---|
| 381 | CALL domain_cfg ( cn_cfg, nn_cfg, jpiglo, jpjglo, jpkglo, jperio ) |
---|
| 382 | ELSE ! user-defined namelist |
---|
| 383 | CALL usr_def_nam( cn_cfg, nn_cfg, jpiglo, jpjglo, jpkglo, jperio ) |
---|
| 384 | ENDIF |
---|
| 385 | ! |
---|
| 386 | IF(lwm) WRITE( numond, namcfg ) |
---|
| 387 | ! |
---|
| 388 | ! !-----------------------------------------! |
---|
| 389 | ! ! mpp parameters and domain decomposition ! |
---|
| 390 | ! !-----------------------------------------! |
---|
| 391 | CALL mpp_init |
---|
[2715] | 392 | |
---|
[7646] | 393 | ! Now we know the dimensions of the grid and numout has been set: we can allocate arrays |
---|
[2715] | 394 | CALL nemo_alloc() |
---|
| 395 | |
---|
[12377] | 396 | ! Initialise time level indices |
---|
| 397 | Nbb = 1; Nnn = 2; Naa = 3; Nrhs = Naa |
---|
[13216] | 398 | #if defined key_agrif |
---|
| 399 | Kbb_a = Nbb; Kmm_a = Nnn; Krhs_a = Nrhs ! agrif_oce module copies of time level indices |
---|
| 400 | #endif |
---|
[2496] | 401 | ! !-------------------------------! |
---|
| 402 | ! ! NEMO general initialization ! |
---|
| 403 | ! !-------------------------------! |
---|
[473] | 404 | |
---|
[7646] | 405 | CALL nemo_ctl ! Control prints |
---|
[2382] | 406 | ! |
---|
[9213] | 407 | ! ! General initialization |
---|
| 408 | IF( ln_timing ) CALL timing_init ! timing |
---|
| 409 | IF( ln_timing ) CALL timing_start( 'nemo_init') |
---|
[3294] | 410 | ! |
---|
[9367] | 411 | CALL phy_cst ! Physical constants |
---|
| 412 | CALL eos_init ! Equation of state |
---|
| 413 | IF( lk_c1d ) CALL c1d_init ! 1D column configuration |
---|
| 414 | CALL wad_init ! Wetting and drying options |
---|
[13216] | 415 | |
---|
| 416 | #if defined key_agrif |
---|
| 417 | CALL Agrif_Declare_Var_ini ! " " " " " DOM |
---|
| 418 | #endif |
---|
[12377] | 419 | CALL dom_init( Nbb, Nnn, Naa, "OPA") ! Domain |
---|
[13216] | 420 | |
---|
| 421 | |
---|
| 422 | |
---|
[12377] | 423 | IF( ln_crs ) CALL crs_init( Nnn ) ! coarsened grid: domain initialization |
---|
| 424 | IF( sn_cfctl%l_prtctl ) & |
---|
| 425 | & CALL prt_ctl_init ! Print control |
---|
[6140] | 426 | |
---|
[12377] | 427 | CALL diurnal_sst_bulk_init ! diurnal sst |
---|
[9213] | 428 | IF( ln_diurnal ) CALL diurnal_sst_coolskin_init ! cool skin |
---|
| 429 | ! |
---|
[12377] | 430 | IF( ln_diurnal_only ) THEN ! diurnal only: a subset of the initialisation routines |
---|
| 431 | CALL istate_init( Nbb, Nnn, Naa ) ! ocean initial state (Dynamics and tracers) |
---|
| 432 | CALL sbc_init( Nbb, Nnn, Naa ) ! Forcings : surface module |
---|
| 433 | CALL tra_qsr_init ! penetrative solar radiation qsr |
---|
| 434 | IF( ln_diaobs ) THEN ! Observation & model comparison |
---|
| 435 | CALL dia_obs_init( Nnn ) ! Initialize observational data |
---|
| 436 | CALL dia_obs( nit000 - 1, Nnn ) ! Observation operator for restart |
---|
[6140] | 437 | ENDIF |
---|
[12377] | 438 | IF( lk_asminc ) CALL asm_inc_init( Nbb, Nnn, Nrhs ) ! Assimilation increments |
---|
[9213] | 439 | ! |
---|
| 440 | RETURN ! end of initialization |
---|
[6140] | 441 | ENDIF |
---|
[12377] | 442 | ! |
---|
[13216] | 443 | |
---|
[12377] | 444 | CALL istate_init( Nbb, Nnn, Naa ) ! ocean initial state (Dynamics and tracers) |
---|
[3651] | 445 | |
---|
[5836] | 446 | ! ! external forcing |
---|
[12377] | 447 | CALL tide_init ! tidal harmonics |
---|
| 448 | CALL sbc_init( Nbb, Nnn, Naa ) ! surface boundary conditions (including sea-ice) |
---|
| 449 | CALL bdy_init ! Open boundaries initialisation |
---|
[9019] | 450 | |
---|
[5836] | 451 | ! ! Ocean physics |
---|
[12377] | 452 | CALL zdf_phy_init( Nnn ) ! Vertical physics |
---|
[9019] | 453 | |
---|
[2082] | 454 | ! ! Lateral physics |
---|
[9019] | 455 | CALL ldf_tra_init ! Lateral ocean tracer physics |
---|
| 456 | CALL ldf_eiv_init ! eddy induced velocity param. |
---|
| 457 | CALL ldf_dyn_init ! Lateral ocean momentum physics |
---|
[2082] | 458 | |
---|
[9019] | 459 | ! ! Active tracers |
---|
| 460 | IF( ln_traqsr ) CALL tra_qsr_init ! penetrative solar radiation qsr |
---|
| 461 | CALL tra_bbc_init ! bottom heat flux |
---|
[10350] | 462 | CALL tra_bbl_init ! advective (and/or diffusive) bottom boundary layer scheme |
---|
[9019] | 463 | CALL tra_dmp_init ! internal tracer damping |
---|
| 464 | CALL tra_adv_init ! horizontal & vertical advection |
---|
| 465 | CALL tra_ldf_init ! lateral mixing |
---|
[2027] | 466 | |
---|
[9019] | 467 | ! ! Dynamics |
---|
[12377] | 468 | IF( lk_c1d ) CALL dyn_dmp_init ! internal momentum damping |
---|
| 469 | CALL dyn_adv_init ! advection (vector or flux form) |
---|
| 470 | CALL dyn_vor_init ! vorticity term including Coriolis |
---|
| 471 | CALL dyn_ldf_init ! lateral mixing |
---|
| 472 | CALL dyn_hpg_init( Nnn ) ! horizontal gradient of Hydrostatic pressure |
---|
| 473 | CALL dyn_spg_init ! surface pressure gradient |
---|
[3764] | 474 | |
---|
[5836] | 475 | #if defined key_top |
---|
| 476 | ! ! Passive tracers |
---|
[12377] | 477 | CALL trc_init( Nbb, Nnn, Naa ) |
---|
[5836] | 478 | #endif |
---|
[9019] | 479 | IF( l_ldfslp ) CALL ldf_slp_init ! slope of lateral mixing |
---|
[5836] | 480 | |
---|
| 481 | ! ! Icebergs |
---|
[12489] | 482 | CALL icb_init( rn_Dt, nit000) ! initialise icebergs instance |
---|
[5836] | 483 | |
---|
[12377] | 484 | ! ice shelf |
---|
| 485 | CALL isf_init( Nbb, Nnn, Naa ) |
---|
| 486 | |
---|
[5836] | 487 | ! ! Misc. options |
---|
[9019] | 488 | CALL sto_par_init ! Stochastic parametrization |
---|
| 489 | IF( ln_sto_eos ) CALL sto_pts_init ! RRandom T/S fluctuations |
---|
[4147] | 490 | |
---|
[5836] | 491 | ! ! Diagnostics |
---|
[12377] | 492 | CALL flo_init( Nnn ) ! drifting Floats |
---|
[9019] | 493 | IF( ln_diacfl ) CALL dia_cfl_init ! Initialise CFL diagnostics |
---|
[12377] | 494 | ! CALL dia_ptr_init ! Poleward TRansports initialization |
---|
[11536] | 495 | CALL dia_dct_init ! Sections tranports |
---|
[12377] | 496 | CALL dia_hsb_init( Nnn ) ! heat content, salt content and volume budgets |
---|
| 497 | CALL trd_init( Nnn ) ! Mixed-layer/Vorticity/Integral constraints trends |
---|
| 498 | CALL dia_obs_init( Nnn ) ! Initialize observational data |
---|
| 499 | CALL dia_25h_init( Nbb ) ! 25h mean outputs |
---|
| 500 | CALL dia_detide_init ! Weights computation for daily detiding of model diagnostics |
---|
| 501 | IF( ln_diaobs ) CALL dia_obs( nit000-1, Nnn ) ! Observation operator for restart |
---|
| 502 | CALL dia_mlr_init ! Initialisation of IOM context management for multiple-linear-regression analysis |
---|
[6140] | 503 | |
---|
[9019] | 504 | ! ! Assimilation increments |
---|
[12377] | 505 | IF( lk_asminc ) CALL asm_inc_init( Nbb, Nnn, Nrhs ) ! Initialize assimilation increments |
---|
[1593] | 506 | ! |
---|
[9213] | 507 | IF(lwp) WRITE(numout,cform_aaa) ! Flag AAAAAAA |
---|
| 508 | ! |
---|
| 509 | IF( ln_timing ) CALL timing_stop( 'nemo_init') |
---|
| 510 | ! |
---|
[2496] | 511 | END SUBROUTINE nemo_init |
---|
[467] | 512 | |
---|
| 513 | |
---|
[2496] | 514 | SUBROUTINE nemo_ctl |
---|
[467] | 515 | !!---------------------------------------------------------------------- |
---|
[2496] | 516 | !! *** ROUTINE nemo_ctl *** |
---|
[467] | 517 | !! |
---|
[3764] | 518 | !! ** Purpose : control print setting |
---|
[467] | 519 | !! |
---|
[11536] | 520 | !! ** Method : - print namctl and namcfg information and check some consistencies |
---|
[467] | 521 | !!---------------------------------------------------------------------- |
---|
[2442] | 522 | ! |
---|
[2496] | 523 | IF(lwp) THEN ! control print |
---|
[531] | 524 | WRITE(numout,*) |
---|
[7646] | 525 | WRITE(numout,*) 'nemo_ctl: Control prints' |
---|
[9213] | 526 | WRITE(numout,*) '~~~~~~~~' |
---|
[1593] | 527 | WRITE(numout,*) ' Namelist namctl' |
---|
[10570] | 528 | WRITE(numout,*) ' sn_cfctl%l_runstat = ', sn_cfctl%l_runstat |
---|
| 529 | WRITE(numout,*) ' sn_cfctl%l_trcstat = ', sn_cfctl%l_trcstat |
---|
| 530 | WRITE(numout,*) ' sn_cfctl%l_oceout = ', sn_cfctl%l_oceout |
---|
| 531 | WRITE(numout,*) ' sn_cfctl%l_layout = ', sn_cfctl%l_layout |
---|
[12377] | 532 | WRITE(numout,*) ' sn_cfctl%l_prtctl = ', sn_cfctl%l_prtctl |
---|
| 533 | WRITE(numout,*) ' sn_cfctl%l_prttrc = ', sn_cfctl%l_prttrc |
---|
| 534 | WRITE(numout,*) ' sn_cfctl%l_oasout = ', sn_cfctl%l_oasout |
---|
[10570] | 535 | WRITE(numout,*) ' sn_cfctl%procmin = ', sn_cfctl%procmin |
---|
| 536 | WRITE(numout,*) ' sn_cfctl%procmax = ', sn_cfctl%procmax |
---|
| 537 | WRITE(numout,*) ' sn_cfctl%procincr = ', sn_cfctl%procincr |
---|
| 538 | WRITE(numout,*) ' sn_cfctl%ptimincr = ', sn_cfctl%ptimincr |
---|
[1601] | 539 | WRITE(numout,*) ' level of print nn_print = ', nn_print |
---|
| 540 | WRITE(numout,*) ' Start i indice for SUM control nn_ictls = ', nn_ictls |
---|
| 541 | WRITE(numout,*) ' End i indice for SUM control nn_ictle = ', nn_ictle |
---|
| 542 | WRITE(numout,*) ' Start j indice for SUM control nn_jctls = ', nn_jctls |
---|
| 543 | WRITE(numout,*) ' End j indice for SUM control nn_jctle = ', nn_jctle |
---|
| 544 | WRITE(numout,*) ' number of proc. following i nn_isplt = ', nn_isplt |
---|
| 545 | WRITE(numout,*) ' number of proc. following j nn_jsplt = ', nn_jsplt |
---|
[9019] | 546 | WRITE(numout,*) ' timing by routine ln_timing = ', ln_timing |
---|
| 547 | WRITE(numout,*) ' CFL diagnostics ln_diacfl = ', ln_diacfl |
---|
[531] | 548 | ENDIF |
---|
[2442] | 549 | ! |
---|
[1601] | 550 | nprint = nn_print ! convert DOCTOR namelist names into OLD names |
---|
| 551 | nictls = nn_ictls |
---|
| 552 | nictle = nn_ictle |
---|
| 553 | njctls = nn_jctls |
---|
| 554 | njctle = nn_jctle |
---|
| 555 | isplt = nn_isplt |
---|
[9213] | 556 | jsplt = nn_jsplt |
---|
[4147] | 557 | |
---|
| 558 | IF(lwp) THEN ! control print |
---|
| 559 | WRITE(numout,*) |
---|
| 560 | WRITE(numout,*) ' Namelist namcfg' |
---|
[7646] | 561 | WRITE(numout,*) ' read domain configuration file ln_read_cfg = ', ln_read_cfg |
---|
| 562 | WRITE(numout,*) ' filename to be read cn_domcfg = ', TRIM(cn_domcfg) |
---|
[9213] | 563 | WRITE(numout,*) ' keep closed seas in the domain (if exist) ln_closea = ', ln_closea |
---|
| 564 | WRITE(numout,*) ' create a configuration definition file ln_write_cfg = ', ln_write_cfg |
---|
[7646] | 565 | WRITE(numout,*) ' filename to be written cn_domcfg_out = ', TRIM(cn_domcfg_out) |
---|
| 566 | WRITE(numout,*) ' use file attribute if exists as i/p j-start ln_use_jattr = ', ln_use_jattr |
---|
[4147] | 567 | ENDIF |
---|
[9213] | 568 | IF( .NOT.ln_read_cfg ) ln_closea = .false. ! dealing possible only with a domcfg file |
---|
| 569 | ! |
---|
[2442] | 570 | ! ! Parameter control |
---|
[1593] | 571 | ! |
---|
[12377] | 572 | IF( sn_cfctl%l_prtctl .OR. sn_cfctl%l_prttrc ) THEN ! sub-domain area indices for the control prints |
---|
[3294] | 573 | IF( lk_mpp .AND. jpnij > 1 ) THEN |
---|
[2496] | 574 | isplt = jpni ; jsplt = jpnj ; ijsplt = jpni*jpnj ! the domain is forced to the real split domain |
---|
[531] | 575 | ELSE |
---|
| 576 | IF( isplt == 1 .AND. jsplt == 1 ) THEN |
---|
[1593] | 577 | CALL ctl_warn( ' - isplt & jsplt are equal to 1', & |
---|
| 578 | & ' - the print control will be done over the whole domain' ) |
---|
[531] | 579 | ENDIF |
---|
[1593] | 580 | ijsplt = isplt * jsplt ! total number of processors ijsplt |
---|
[531] | 581 | ENDIF |
---|
| 582 | IF(lwp) WRITE(numout,*)' - The total number of processors over which the' |
---|
| 583 | IF(lwp) WRITE(numout,*)' print control will be done is ijsplt : ', ijsplt |
---|
[1593] | 584 | ! |
---|
| 585 | ! ! indices used for the SUM control |
---|
| 586 | IF( nictls+nictle+njctls+njctle == 0 ) THEN ! print control done over the default area |
---|
[3764] | 587 | lsp_area = .FALSE. |
---|
[1593] | 588 | ELSE ! print control done over a specific area |
---|
[531] | 589 | lsp_area = .TRUE. |
---|
| 590 | IF( nictls < 1 .OR. nictls > jpiglo ) THEN |
---|
| 591 | CALL ctl_warn( ' - nictls must be 1<=nictls>=jpiglo, it is forced to 1' ) |
---|
| 592 | nictls = 1 |
---|
| 593 | ENDIF |
---|
| 594 | IF( nictle < 1 .OR. nictle > jpiglo ) THEN |
---|
| 595 | CALL ctl_warn( ' - nictle must be 1<=nictle>=jpiglo, it is forced to jpiglo' ) |
---|
| 596 | nictle = jpiglo |
---|
| 597 | ENDIF |
---|
| 598 | IF( njctls < 1 .OR. njctls > jpjglo ) THEN |
---|
| 599 | CALL ctl_warn( ' - njctls must be 1<=njctls>=jpjglo, it is forced to 1' ) |
---|
| 600 | njctls = 1 |
---|
| 601 | ENDIF |
---|
| 602 | IF( njctle < 1 .OR. njctle > jpjglo ) THEN |
---|
| 603 | CALL ctl_warn( ' - njctle must be 1<=njctle>=jpjglo, it is forced to jpjglo' ) |
---|
| 604 | njctle = jpjglo |
---|
| 605 | ENDIF |
---|
[1593] | 606 | ENDIF |
---|
| 607 | ENDIF |
---|
[2442] | 608 | ! |
---|
[9213] | 609 | IF( 1._wp /= SIGN(1._wp,-0._wp) ) CALL ctl_stop( 'nemo_ctl: The intrinsec SIGN function follows f2003 standard.', & |
---|
[10425] | 610 | & 'Compile with key_nosignedzero enabled:', & |
---|
| 611 | & '--> add -Dkey_nosignedzero to the definition of %CPP in your arch file' ) |
---|
[3764] | 612 | ! |
---|
[9023] | 613 | #if defined key_agrif |
---|
[9124] | 614 | IF( ln_timing ) CALL ctl_stop( 'AGRIF not implemented with ln_timing = true') |
---|
[9023] | 615 | #endif |
---|
| 616 | ! |
---|
[2496] | 617 | END SUBROUTINE nemo_ctl |
---|
[467] | 618 | |
---|
| 619 | |
---|
[2496] | 620 | SUBROUTINE nemo_closefile |
---|
[467] | 621 | !!---------------------------------------------------------------------- |
---|
[2496] | 622 | !! *** ROUTINE nemo_closefile *** |
---|
[467] | 623 | !! |
---|
| 624 | !! ** Purpose : Close the files |
---|
| 625 | !!---------------------------------------------------------------------- |
---|
[1593] | 626 | ! |
---|
| 627 | IF( lk_mpp ) CALL mppsync |
---|
| 628 | ! |
---|
[1685] | 629 | CALL iom_close ! close all input/output files managed by iom_* |
---|
[1593] | 630 | ! |
---|
[4147] | 631 | IF( numstp /= -1 ) CLOSE( numstp ) ! time-step file |
---|
[9019] | 632 | IF( numrun /= -1 ) CLOSE( numrun ) ! run statistics file |
---|
[4624] | 633 | IF( lwm.AND.numond /= -1 ) CLOSE( numond ) ! oce output namelist |
---|
| 634 | IF( lwm.AND.numoni /= -1 ) CLOSE( numoni ) ! ice output namelist |
---|
[4147] | 635 | IF( numevo_ice /= -1 ) CLOSE( numevo_ice ) ! ice variables (temp. evolution) |
---|
| 636 | IF( numout /= 6 ) CLOSE( numout ) ! standard model output file |
---|
| 637 | IF( numdct_vol /= -1 ) CLOSE( numdct_vol ) ! volume transports |
---|
| 638 | IF( numdct_heat /= -1 ) CLOSE( numdct_heat ) ! heat transports |
---|
| 639 | IF( numdct_salt /= -1 ) CLOSE( numdct_salt ) ! salt transports |
---|
[1593] | 640 | ! |
---|
[2442] | 641 | numout = 6 ! redefine numout in case it is used after this point... |
---|
| 642 | ! |
---|
[2496] | 643 | END SUBROUTINE nemo_closefile |
---|
[467] | 644 | |
---|
[2715] | 645 | |
---|
| 646 | SUBROUTINE nemo_alloc |
---|
| 647 | !!---------------------------------------------------------------------- |
---|
| 648 | !! *** ROUTINE nemo_alloc *** |
---|
| 649 | !! |
---|
| 650 | !! ** Purpose : Allocate all the dynamic arrays of the OPA modules |
---|
| 651 | !! |
---|
| 652 | !! ** Method : |
---|
| 653 | !!---------------------------------------------------------------------- |
---|
[9213] | 654 | USE diawri , ONLY : dia_wri_alloc |
---|
| 655 | USE dom_oce , ONLY : dom_oce_alloc |
---|
| 656 | USE trc_oce , ONLY : trc_oce_alloc |
---|
| 657 | USE bdy_oce , ONLY : bdy_oce_alloc |
---|
[2715] | 658 | ! |
---|
| 659 | INTEGER :: ierr |
---|
| 660 | !!---------------------------------------------------------------------- |
---|
| 661 | ! |
---|
[9213] | 662 | ierr = oce_alloc () ! ocean |
---|
| 663 | ierr = ierr + dia_wri_alloc() |
---|
| 664 | ierr = ierr + dom_oce_alloc() ! ocean domain |
---|
| 665 | ierr = ierr + zdf_oce_alloc() ! ocean vertical physics |
---|
| 666 | ierr = ierr + trc_oce_alloc() ! shared TRC / TRA arrays |
---|
| 667 | ierr = ierr + bdy_oce_alloc() ! bdy masks (incl. initialization) |
---|
[2715] | 668 | ! |
---|
[10425] | 669 | CALL mpp_sum( 'nemogcm', ierr ) |
---|
[9213] | 670 | IF( ierr /= 0 ) CALL ctl_stop( 'STOP', 'nemo_alloc: unable to allocate standard ocean arrays' ) |
---|
[2715] | 671 | ! |
---|
| 672 | END SUBROUTINE nemo_alloc |
---|
| 673 | |
---|
[11536] | 674 | |
---|
[12933] | 675 | SUBROUTINE nemo_set_cfctl(sn_cfctl, setto ) |
---|
[10570] | 676 | !!---------------------------------------------------------------------- |
---|
| 677 | !! *** ROUTINE nemo_set_cfctl *** |
---|
| 678 | !! |
---|
| 679 | !! ** Purpose : Set elements of the output control structure to setto. |
---|
| 680 | !! |
---|
| 681 | !! ** Method : Note this routine can be used to switch on/off some |
---|
[12933] | 682 | !! types of output for selected areas. |
---|
[10570] | 683 | !!---------------------------------------------------------------------- |
---|
[12933] | 684 | TYPE(sn_ctl), INTENT(inout) :: sn_cfctl |
---|
| 685 | LOGICAL , INTENT(in ) :: setto |
---|
[10570] | 686 | !!---------------------------------------------------------------------- |
---|
[12933] | 687 | sn_cfctl%l_runstat = setto |
---|
| 688 | sn_cfctl%l_trcstat = setto |
---|
[10570] | 689 | sn_cfctl%l_oceout = setto |
---|
| 690 | sn_cfctl%l_layout = setto |
---|
[12377] | 691 | sn_cfctl%l_prtctl = setto |
---|
| 692 | sn_cfctl%l_prttrc = setto |
---|
| 693 | sn_cfctl%l_oasout = setto |
---|
[10570] | 694 | END SUBROUTINE nemo_set_cfctl |
---|
| 695 | |
---|
[3] | 696 | !!====================================================================== |
---|
[2496] | 697 | END MODULE nemogcm |
---|
[4354] | 698 | |
---|