| 1 | MODULE nemogcm |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE nemogcm *** |
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| 4 | !! Ocean system : NEMO GCM (ocean dynamics, on-line tracers, biochemistry and sea-ice) |
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| 5 | !!====================================================================== |
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| 6 | !! History : OPA ! 1990-10 (C. Levy, G. Madec) Original code |
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| 7 | !! 7.0 ! 1991-11 (M. Imbard, C. Levy, G. Madec) |
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| 8 | !! 7.1 ! 1993-03 (M. Imbard, C. Levy, G. Madec, O. Marti, M. Guyon, A. Lazar, |
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| 9 | !! P. Delecluse, C. Perigaud, G. Caniaux, B. Colot, C. Maes) release 7.1 |
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| 10 | !! - ! 1992-06 (L.Terray) coupling implementation |
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| 11 | !! - ! 1993-11 (M.A. Filiberti) IGLOO sea-ice |
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| 12 | !! 8.0 ! 1996-03 (M. Imbard, C. Levy, G. Madec, O. Marti, M. Guyon, A. Lazar, |
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| 13 | !! P. Delecluse, L.Terray, M.A. Filiberti, J. Vialar, A.M. Treguier, M. Levy) release 8.0 |
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| 14 | !! 8.1 ! 1997-06 (M. Imbard, G. Madec) |
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| 15 | !! 8.2 ! 1999-11 (M. Imbard, H. Goosse) sea-ice model |
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| 16 | !! ! 1999-12 (V. Thierry, A-M. Treguier, M. Imbard, M-A. Foujols) OPEN-MP |
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| 17 | !! ! 2000-07 (J-M Molines, M. Imbard) Open Boundary Conditions (CLIPPER) |
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| 18 | !! NEMO 1.0 ! 2002-08 (G. Madec) F90: Free form and modules |
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| 19 | !! - ! 2004-06 (R. Redler, NEC CCRLE, Germany) add OASIS[3/4] coupled interfaces |
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| 20 | !! - ! 2004-08 (C. Talandier) New trends organization |
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| 21 | !! - ! 2005-06 (C. Ethe) Add the 1D configuration possibility |
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| 22 | !! - ! 2005-11 (V. Garnier) Surface pressure gradient organization |
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| 23 | !! - ! 2006-03 (L. Debreu, C. Mazauric) Agrif implementation |
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| 24 | !! - ! 2006-04 (G. Madec, R. Benshila) Step reorganization |
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| 25 | !! - ! 2007-07 (J. Chanut, A. Sellar) Unstructured open boundaries (BDY) |
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| 26 | !! 3.2 ! 2009-08 (S. Masson) open/write in the listing file in mpp |
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| 27 | !! 3.3 ! 2010-05 (K. Mogensen, A. Weaver, M. Martin, D. Lea) Assimilation interface |
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| 28 | !! - ! 2010-10 (C. Ethe, G. Madec) reorganisation of initialisation phase |
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| 29 | !! 3.3.1! 2011-01 (A. R. Porter, STFC Daresbury) dynamical allocation |
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| 30 | !! - ! 2011-11 (C. Harris) decomposition changes for running with CICE |
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| 31 | !! 3.6 ! 2012-05 (C. Calone, J. Simeon, G. Madec, C. Ethe) Add grid coarsening |
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| 32 | !! - ! 2014-12 (G. Madec) remove KPP scheme and cross-land advection (cla) |
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| 33 | !! 4.0 ! 2016-10 (G. Madec, S. Flavoni) domain configuration / user defined interface |
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| 34 | !!---------------------------------------------------------------------- |
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| 35 | |
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| 36 | !!---------------------------------------------------------------------- |
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| 37 | !! nemo_gcm : solve ocean dynamics, tracer, biogeochemistry and/or sea-ice |
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| 38 | !! nemo_init : initialization of the NEMO system |
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| 39 | !! nemo_ctl : initialisation of the contol print |
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| 40 | !! nemo_closefile: close remaining open files |
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| 41 | !! nemo_alloc : dynamical allocation |
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| 42 | !!---------------------------------------------------------------------- |
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| 43 | USE step_oce ! module used in the ocean time stepping module (step.F90) |
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| 44 | ! |
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| 45 | USE phycst ! physical constant (par_cst routine) |
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| 46 | USE domain ! domain initialization (dom_init & dom_cfg routines) |
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| 47 | USE wet_dry ! Wetting and drying setting (wad_init routine) |
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| 48 | USE usrdef_nam ! user defined configuration namelist |
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| 49 | USE tide_mod, ONLY : tide_init ! tidal components initialization (tide_init routine) |
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| 50 | USE bdyini , ONLY : bdy_init ! open boundary cond. setting (bdy_init routine) |
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| 51 | USE istate ! initial state setting (istate_init routine) |
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| 52 | USE trdini ! dyn/tra trends initialization (trd_init routine) |
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| 53 | USE asminc ! assimilation increments |
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| 54 | USE asmbkg ! writing out state trajectory |
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| 55 | USE diadct ! sections transports (dia_dct_init routine) |
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| 56 | USE diaobs ! Observation diagnostics (dia_obs_init routine) |
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| 57 | USE diacfl ! CFL diagnostics (dia_cfl_init routine) |
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| 58 | USE diamlr ! IOM context management for multiple-linear-regression analysis |
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| 59 | USE isfstp ! ice shelf (isf_stp_init routine) |
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| 60 | USE icbini ! handle bergs, initialisation |
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| 61 | USE icbstp , ONLY : icb_end ! handle bergs, close iceberg files |
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| 62 | USE cpl_oasis3 ! OASIS3 coupling |
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| 63 | USE dyndmp ! Momentum damping (C1D only) |
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| 64 | USE step_diu ! diurnal bulk SST timestepping (called from here if run offline) |
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| 65 | USE crsini ! initialise grid coarsening utility |
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| 66 | USE dia25h , ONLY : dia_25h_init ! 25h mean output (initialisation) |
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| 67 | USE c1d ! 1D configuration |
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| 68 | USE step_c1d ! Time stepping loop for the 1D configuration |
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| 69 | #if defined key_top |
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| 70 | USE trcini ! passive tracer initialisation |
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| 71 | #endif |
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| 72 | #if defined key_nemocice_decomp |
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| 73 | USE ice_domain_size, only: nx_global, ny_global |
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| 74 | #endif |
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| 75 | #if defined key_qco |
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| 76 | USE stpmlf ! NEMO time-stepping (stp_MLF routine) |
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| 77 | #else |
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| 78 | USE step ! NEMO time-stepping (stp routine) |
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| 79 | #endif |
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| 80 | ! |
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| 81 | USE lib_mpp ! distributed memory computing |
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| 82 | USE mppini ! shared/distributed memory setting (mpp_init routine) |
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| 83 | USE lbcnfd , ONLY : isendto, nsndto ! Setup of north fold exchanges |
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| 84 | USE lib_fortran ! Fortran utilities (allows no signed zero when 'key_nosignedzero' defined) |
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| 85 | #if defined key_iomput |
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| 86 | USE xios ! xIOserver |
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| 87 | #endif |
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| 88 | #if defined key_agrif |
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| 89 | USE agrif_all_update ! Master Agrif update |
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| 90 | USE agrif_oce_update |
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| 91 | #endif |
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| 92 | USE halo_mng |
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| 93 | |
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| 94 | IMPLICIT NONE |
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| 95 | PRIVATE |
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| 96 | |
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| 97 | PUBLIC nemo_gcm ! called by model.F90 |
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| 98 | PUBLIC nemo_init ! needed by AGRIF |
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| 99 | PUBLIC nemo_alloc ! needed by TAM |
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| 100 | |
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| 101 | CHARACTER(lc) :: cform_aaa="( /, 'AAAAAAAA', / ) " ! flag for output listing |
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| 102 | |
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| 103 | #if defined key_mpp_mpi |
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| 104 | ! need MPI_Wtime |
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| 105 | INCLUDE 'mpif.h' |
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| 106 | #endif |
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| 107 | |
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| 108 | !!---------------------------------------------------------------------- |
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| 109 | !! NEMO/OCE 4.0 , NEMO Consortium (2018) |
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| 110 | !! $Id$ |
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| 111 | !! Software governed by the CeCILL license (see ./LICENSE) |
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| 112 | !!---------------------------------------------------------------------- |
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| 113 | CONTAINS |
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| 114 | |
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| 115 | SUBROUTINE nemo_gcm |
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| 116 | !!---------------------------------------------------------------------- |
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| 117 | !! *** ROUTINE nemo_gcm *** |
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| 118 | !! |
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| 119 | !! ** Purpose : NEMO solves the primitive equations on an orthogonal |
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| 120 | !! curvilinear mesh on the sphere. |
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| 121 | !! |
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| 122 | !! ** Method : - model general initialization |
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| 123 | !! - launch the time-stepping (stp routine) |
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| 124 | !! - finalize the run by closing files and communications |
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| 125 | !! |
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| 126 | !! References : Madec, Delecluse, Imbard, and Levy, 1997: internal report, IPSL. |
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| 127 | !! Madec, 2008, internal report, IPSL. |
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| 128 | !!---------------------------------------------------------------------- |
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| 129 | INTEGER :: istp ! time step index |
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| 130 | REAL(wp):: zstptiming ! elapsed time for 1 time step |
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| 131 | !!---------------------------------------------------------------------- |
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| 132 | ! |
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| 133 | #if defined key_agrif |
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| 134 | CALL Agrif_Init_Grids() ! AGRIF: set the meshes |
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| 135 | #endif |
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| 136 | ! !-----------------------! |
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| 137 | CALL nemo_init !== Initialisations ==! |
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| 138 | ! !-----------------------! |
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| 139 | #if defined key_agrif |
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| 140 | Kbb_a = Nbb; Kmm_a = Nnn; Krhs_a = Nrhs ! agrif_oce module copies of time level indices |
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| 141 | CALL Agrif_Declare_Var ! " " " " " DYN/TRA |
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| 142 | # if defined key_top |
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| 143 | CALL Agrif_Declare_Var_top ! " " " " " TOP |
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| 144 | # endif |
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| 145 | #endif |
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| 146 | ! check that all process are still there... If some process have an error, |
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| 147 | ! they will never enter in step and other processes will wait until the end of the cpu time! |
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| 148 | CALL mpp_max( 'nemogcm', nstop ) |
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| 149 | |
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| 150 | IF(lwp) WRITE(numout,cform_aaa) ! Flag AAAAAAA |
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| 151 | |
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| 152 | ! !-----------------------! |
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| 153 | ! !== time stepping ==! |
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| 154 | ! !-----------------------! |
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| 155 | ! |
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| 156 | ! !== set the model time-step ==! |
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| 157 | ! |
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| 158 | istp = nit000 |
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| 159 | ! |
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| 160 | #if defined key_c1d |
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| 161 | DO WHILE ( istp <= nitend .AND. nstop == 0 ) !== C1D time-stepping ==! |
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| 162 | CALL stp_c1d( istp ) |
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| 163 | istp = istp + 1 |
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| 164 | END DO |
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| 165 | #else |
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| 166 | ! |
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| 167 | # if defined key_agrif |
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| 168 | ! !== AGRIF time-stepping ==! |
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| 169 | CALL Agrif_Regrid() |
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| 170 | ! |
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| 171 | ! Recursive update from highest nested level to lowest: |
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| 172 | Kbb_a = Nbb; Kmm_a = Nnn; Krhs_a = Nrhs ! agrif_oce module copies of time level indices |
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| 173 | CALL Agrif_step_child_adj(Agrif_Update_All) |
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| 174 | CALL Agrif_step_child_adj(Agrif_Check_parent_bat) |
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| 175 | ! |
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| 176 | DO WHILE( istp <= nitend .AND. nstop == 0 ) |
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| 177 | # if defined key_qco |
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| 178 | CALL stp_MLF |
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| 179 | # else |
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| 180 | CALL stp |
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| 181 | # endif |
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| 182 | istp = istp + 1 |
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| 183 | END DO |
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| 184 | ! |
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| 185 | # else |
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| 186 | ! |
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| 187 | IF( .NOT.ln_diurnal_only ) THEN !== Standard time-stepping ==! |
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| 188 | ! |
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| 189 | DO WHILE( istp <= nitend .AND. nstop == 0 ) |
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| 190 | ! |
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| 191 | ncom_stp = istp |
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| 192 | IF( ln_timing ) THEN |
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| 193 | zstptiming = MPI_Wtime() |
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| 194 | IF ( istp == ( nit000 + 1 ) ) elapsed_time = zstptiming |
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| 195 | IF ( istp == nitend ) elapsed_time = zstptiming - elapsed_time |
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| 196 | ENDIF |
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| 197 | ! |
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| 198 | # if defined key_qco |
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| 199 | CALL stp_MLF ( istp ) |
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| 200 | # else |
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| 201 | CALL stp ( istp ) |
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| 202 | # endif |
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| 203 | istp = istp + 1 |
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| 204 | ! |
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| 205 | IF( lwp .AND. ln_timing ) WRITE(numtime,*) 'timing step ', istp-1, ' : ', MPI_Wtime() - zstptiming |
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| 206 | ! |
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| 207 | END DO |
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| 208 | ! |
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| 209 | ELSE !== diurnal SST time-steeping only ==! |
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| 210 | ! |
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| 211 | DO WHILE( istp <= nitend .AND. nstop == 0 ) |
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| 212 | CALL stp_diurnal( istp ) ! time step only the diurnal SST |
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| 213 | istp = istp + 1 |
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| 214 | END DO |
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| 215 | ! |
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| 216 | ENDIF |
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| 217 | ! |
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| 218 | # endif |
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| 219 | ! |
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| 220 | #endif |
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| 221 | ! |
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| 222 | IF( ln_diaobs ) CALL dia_obs_wri |
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| 223 | ! |
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| 224 | IF( ln_icebergs ) CALL icb_end( nitend ) |
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| 225 | |
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| 226 | ! !------------------------! |
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| 227 | ! !== finalize the run ==! |
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| 228 | ! !------------------------! |
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| 229 | IF(lwp) WRITE(numout,cform_aaa) ! Flag AAAAAAA |
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| 230 | ! |
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| 231 | IF( nstop /= 0 .AND. lwp ) THEN ! error print |
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| 232 | WRITE(ctmp1,*) ' ==>>> nemo_gcm: a total of ', nstop, ' errors have been found' |
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| 233 | IF( ngrdstop > 0 ) THEN |
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| 234 | WRITE(ctmp9,'(i2)') ngrdstop |
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| 235 | WRITE(ctmp2,*) ' E R R O R detected in Agrif grid '//TRIM(ctmp9) |
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| 236 | WRITE(ctmp3,*) ' Look for "E R R O R" messages in all existing '//TRIM(ctmp9)//'_ocean_output* files' |
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| 237 | CALL ctl_stop( ' ', ctmp1, ' ', ctmp2, ' ', ctmp3 ) |
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| 238 | ELSE |
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| 239 | WRITE(ctmp2,*) ' Look for "E R R O R" messages in all existing ocean_output* files' |
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| 240 | CALL ctl_stop( ' ', ctmp1, ' ', ctmp2 ) |
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| 241 | ENDIF |
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| 242 | ENDIF |
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| 243 | ! |
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| 244 | IF( ln_timing ) CALL timing_finalize |
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| 245 | ! |
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| 246 | CALL nemo_closefile |
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| 247 | ! |
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| 248 | #if defined key_iomput |
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| 249 | CALL xios_finalize ! end mpp communications with xios |
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| 250 | IF( lk_oasis ) CALL cpl_finalize ! end coupling and mpp communications with OASIS |
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| 251 | #else |
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| 252 | IF ( lk_oasis ) THEN ; CALL cpl_finalize ! end coupling and mpp communications with OASIS |
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| 253 | ELSEIF( lk_mpp ) THEN ; CALL mppstop ! end mpp communications |
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| 254 | ENDIF |
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| 255 | #endif |
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| 256 | ! |
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| 257 | IF(lwm) THEN |
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| 258 | IF( nstop == 0 ) THEN ; STOP 0 |
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| 259 | ELSE ; STOP 123 |
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| 260 | ENDIF |
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| 261 | ENDIF |
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| 262 | ! |
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| 263 | END SUBROUTINE nemo_gcm |
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| 264 | |
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| 265 | |
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| 266 | SUBROUTINE nemo_init |
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| 267 | !!---------------------------------------------------------------------- |
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| 268 | !! *** ROUTINE nemo_init *** |
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| 269 | !! |
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| 270 | !! ** Purpose : initialization of the NEMO GCM |
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| 271 | !!---------------------------------------------------------------------- |
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| 272 | INTEGER :: ios, ilocal_comm ! local integers |
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| 273 | !! |
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| 274 | NAMELIST/namctl/ sn_cfctl, ln_timing, ln_diacfl, nn_isplt, nn_jsplt , nn_ictls, & |
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| 275 | & nn_ictle, nn_jctls , nn_jctle |
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| 276 | NAMELIST/namcfg/ ln_read_cfg, cn_domcfg, ln_closea, ln_write_cfg, cn_domcfg_out, ln_use_jattr |
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| 277 | !!---------------------------------------------------------------------- |
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| 278 | ! |
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| 279 | cxios_context = 'nemo' |
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| 280 | ! |
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| 281 | ! !-------------------------------------------------! |
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| 282 | ! ! set communicator & select the local rank ! |
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| 283 | ! ! must be done as soon as possible to get narea ! |
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| 284 | ! !-------------------------------------------------! |
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| 285 | ! |
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| 286 | #if defined key_iomput |
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| 287 | IF( Agrif_Root() ) THEN |
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| 288 | IF( lk_oasis ) THEN |
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| 289 | CALL cpl_init( "oceanx", ilocal_comm ) ! nemo local communicator given by oasis |
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| 290 | CALL xios_initialize( "not used" , local_comm =ilocal_comm ) ! send nemo communicator to xios |
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| 291 | ELSE |
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| 292 | CALL xios_initialize( "for_xios_mpi_id", return_comm=ilocal_comm ) ! nemo local communicator given by xios |
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| 293 | ENDIF |
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| 294 | ENDIF |
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| 295 | CALL mpp_start( ilocal_comm ) |
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| 296 | #else |
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| 297 | IF( lk_oasis ) THEN |
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| 298 | IF( Agrif_Root() ) THEN |
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| 299 | CALL cpl_init( "oceanx", ilocal_comm ) ! nemo local communicator given by oasis |
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| 300 | ENDIF |
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| 301 | CALL mpp_start( ilocal_comm ) |
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| 302 | ELSE |
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| 303 | CALL mpp_start( ) |
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| 304 | ENDIF |
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| 305 | #endif |
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| 306 | ! |
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| 307 | narea = mpprank + 1 ! mpprank: the rank of proc (0 --> mppsize -1 ) |
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| 308 | lwm = (narea == 1) ! control of output namelists |
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| 309 | ! |
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| 310 | ! !---------------------------------------------------------------! |
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| 311 | ! ! Open output files, reference and configuration namelist files ! |
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| 312 | ! !---------------------------------------------------------------! |
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| 313 | ! |
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| 314 | ! open ocean.output as soon as possible to get all output prints (including errors messages) |
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| 315 | IF( lwm ) CALL ctl_opn( numout, 'ocean.output', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. ) |
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| 316 | ! open reference and configuration namelist files |
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| 317 | CALL load_nml( numnam_ref, 'namelist_ref', -1, lwm ) |
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| 318 | CALL load_nml( numnam_cfg, 'namelist_cfg', -1, lwm ) |
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| 319 | IF( lwm ) CALL ctl_opn( numond, 'output.namelist.dyn', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. ) |
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| 320 | ! open /dev/null file to be able to supress output write easily |
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| 321 | IF( Agrif_Root() ) THEN |
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| 322 | CALL ctl_opn( numnul, '/dev/null', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. ) |
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| 323 | #ifdef key_agrif |
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| 324 | ELSE |
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| 325 | numnul = Agrif_Parent(numnul) |
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| 326 | #endif |
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| 327 | ENDIF |
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| 328 | ! !--------------------! |
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| 329 | ! ! Open listing units ! -> need sn_cfctl from namctl to define lwp |
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| 330 | ! !--------------------! |
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| 331 | ! |
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| 332 | READ ( numnam_ref, namctl, IOSTAT = ios, ERR = 901 ) |
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| 333 | 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namctl in reference namelist' ) |
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| 334 | READ ( numnam_cfg, namctl, IOSTAT = ios, ERR = 902 ) |
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| 335 | 902 IF( ios > 0 ) CALL ctl_nam ( ios , 'namctl in configuration namelist' ) |
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| 336 | ! |
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| 337 | ! finalize the definition of namctl variables |
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| 338 | IF( narea < sn_cfctl%procmin .OR. narea > sn_cfctl%procmax .OR. MOD( narea - sn_cfctl%procmin, sn_cfctl%procincr ) /= 0 ) & |
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| 339 | & CALL nemo_set_cfctl( sn_cfctl, .FALSE. ) |
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| 340 | ! |
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| 341 | lwp = (narea == 1) .OR. sn_cfctl%l_oceout ! control of all listing output print |
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| 342 | ! |
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| 343 | IF(lwp) THEN ! open listing units |
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| 344 | ! |
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| 345 | IF( .NOT.lwm ) & ! alreay opened for narea == 1 |
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| 346 | & CALL ctl_opn( numout, 'ocean.output', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE., narea ) |
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| 347 | ! |
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| 348 | WRITE(numout,*) |
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| 349 | WRITE(numout,*) ' CNRS - NERC - Met OFFICE - MERCATOR-ocean - CMCC' |
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| 350 | WRITE(numout,*) ' NEMO team' |
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| 351 | WRITE(numout,*) ' Ocean General Circulation Model' |
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| 352 | WRITE(numout,*) ' NEMO version 4.0 (2020) ' |
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| 353 | WRITE(numout,*) |
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| 354 | WRITE(numout,*) " ._ ._ ._ ._ ._ " |
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| 355 | WRITE(numout,*) " _.-._)`\_.-._)`\_.-._)`\_.-._)`\_.-._)`\_ " |
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| 356 | WRITE(numout,*) |
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| 357 | WRITE(numout,*) " o _, _, " |
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| 358 | WRITE(numout,*) " o .' ( .-' / " |
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| 359 | WRITE(numout,*) " o _/..._'. .' / " |
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| 360 | WRITE(numout,*) " ( o .-'` ` '-./ _.' " |
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| 361 | WRITE(numout,*) " ) ( o) ;= <_ ( " |
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| 362 | WRITE(numout,*) " ( '-.,\\__ __.-;`\ '. ) " |
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| 363 | WRITE(numout,*) " ) ) \) |`\ \) '. \ ( ( " |
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| 364 | WRITE(numout,*) " ( ( \_/ '-._\ ) ) " |
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| 365 | WRITE(numout,*) " ) ) jgs ` ( ( " |
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| 366 | WRITE(numout,*) " ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ " |
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| 367 | WRITE(numout,*) |
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| 368 | ! |
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| 369 | WRITE(numout,cform_aaa) ! Flag AAAAAAA |
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| 370 | ! |
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| 371 | ! ! Control print of the working precision |
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| 372 | WRITE(numout,*) |
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| 373 | IF( wp == dp ) THEN ; WRITE(numout,*) "par_kind : wp = Working precision = dp = double-precision" |
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| 374 | ELSE ; WRITE(numout,*) "par_kind : wp = Working precision = sp = single-precision" |
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| 375 | ENDIF |
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| 376 | WRITE(numout,*) "~~~~~~~~ ****************" |
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| 377 | WRITE(numout,*) |
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| 378 | ! |
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| 379 | ENDIF |
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| 380 | ! |
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| 381 | IF(lwm) WRITE( numond, namctl ) |
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| 382 | ! |
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| 383 | ! !------------------------------------! |
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| 384 | ! ! Set global domain size parameters ! |
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| 385 | ! !------------------------------------! |
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| 386 | ! |
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| 387 | READ ( numnam_ref, namcfg, IOSTAT = ios, ERR = 903 ) |
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| 388 | 903 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namcfg in reference namelist' ) |
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| 389 | READ ( numnam_cfg, namcfg, IOSTAT = ios, ERR = 904 ) |
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| 390 | 904 IF( ios > 0 ) CALL ctl_nam ( ios , 'namcfg in configuration namelist' ) |
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| 391 | ! |
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| 392 | IF( ln_read_cfg ) THEN ! Read sizes in domain configuration file |
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| 393 | CALL domain_cfg ( cn_cfg, nn_cfg, Ni0glo, Nj0glo, jpkglo, jperio ) |
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| 394 | ELSE ! user-defined namelist |
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| 395 | CALL usr_def_nam( cn_cfg, nn_cfg, Ni0glo, Nj0glo, jpkglo, jperio ) |
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| 396 | ENDIF |
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| 397 | ! |
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| 398 | IF(lwm) WRITE( numond, namcfg ) |
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| 399 | ! |
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| 400 | ! !-----------------------------------------! |
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| 401 | ! ! mpp parameters and domain decomposition ! |
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| 402 | ! !-----------------------------------------! |
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| 403 | CALL mpp_init |
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| 404 | |
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| 405 | CALL halo_mng_init() |
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| 406 | ! Now we know the dimensions of the grid and numout has been set: we can allocate arrays |
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| 407 | CALL nemo_alloc() |
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| 408 | |
|---|
| 409 | ! Initialise time level indices |
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| 410 | Nbb = 1 ; Nnn = 2 ; Naa = 3 ; Nrhs = Naa |
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| 411 | #if defined key_agrif |
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| 412 | Kbb_a = Nbb ; Kmm_a = Nnn ; Krhs_a = Nrhs ! agrif_oce module copies of time level indices |
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| 413 | #endif |
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| 414 | ! !-------------------------------! |
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| 415 | ! ! NEMO general initialization ! |
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| 416 | ! !-------------------------------! |
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| 417 | |
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| 418 | CALL nemo_ctl ! Control prints of namctl and namcfg |
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| 419 | ! |
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| 420 | ! ! General initialization |
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| 421 | IF( ln_timing ) CALL timing_init ! timing |
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| 422 | IF( ln_timing ) CALL timing_start( 'nemo_init') |
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| 423 | ! |
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| 424 | CALL phy_cst ! Physical constants |
|---|
| 425 | CALL eos_init ! Equation of state |
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| 426 | IF( lk_c1d ) CALL c1d_init ! 1D column configuration |
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| 427 | CALL wad_init ! Wetting and drying options |
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| 428 | |
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| 429 | #if defined key_agrif |
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| 430 | CALL Agrif_Declare_Var_ini ! " " " " " DOM |
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| 431 | #endif |
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| 432 | CALL dom_init( Nbb, Nnn, Naa ) ! Domain |
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| 433 | IF( ln_crs ) CALL crs_init( Nnn ) ! coarsened grid: domain initialization |
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| 434 | IF( sn_cfctl%l_prtctl ) & |
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| 435 | & CALL prt_ctl_init ! Print control |
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| 436 | |
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| 437 | CALL diurnal_sst_bulk_init ! diurnal sst |
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| 438 | IF( ln_diurnal ) CALL diurnal_sst_coolskin_init ! cool skin |
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| 439 | ! |
|---|
| 440 | IF( ln_diurnal_only ) THEN ! diurnal only: a subset of the initialisation routines |
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| 441 | CALL istate_init( Nbb, Nnn, Naa ) ! ocean initial state (Dynamics and tracers) |
|---|
| 442 | CALL sbc_init( Nbb, Nnn, Naa ) ! Forcings : surface module |
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| 443 | CALL tra_qsr_init ! penetrative solar radiation qsr |
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| 444 | IF( ln_diaobs ) THEN ! Observation & model comparison |
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| 445 | CALL dia_obs_init( Nnn ) ! Initialize observational data |
|---|
| 446 | CALL dia_obs( nit000 - 1, Nnn ) ! Observation operator for restart |
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| 447 | ENDIF |
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| 448 | IF( lk_asminc ) CALL asm_inc_init( Nbb, Nnn, Nrhs ) ! Assimilation increments |
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| 449 | ! |
|---|
| 450 | RETURN ! end of initialization |
|---|
| 451 | ENDIF |
|---|
| 452 | ! |
|---|
| 453 | |
|---|
| 454 | CALL istate_init( Nbb, Nnn, Naa ) ! ocean initial state (Dynamics and tracers) |
|---|
| 455 | |
|---|
| 456 | ! ! external forcing |
|---|
| 457 | CALL tide_init ! tidal harmonics |
|---|
| 458 | CALL sbc_init( Nbb, Nnn, Naa ) ! surface boundary conditions (including sea-ice) |
|---|
| 459 | CALL bdy_init ! Open boundaries initialisation |
|---|
| 460 | |
|---|
| 461 | ! ! Ocean physics |
|---|
| 462 | CALL zdf_phy_init( Nnn ) ! Vertical physics |
|---|
| 463 | |
|---|
| 464 | ! ! Lateral physics |
|---|
| 465 | CALL ldf_tra_init ! Lateral ocean tracer physics |
|---|
| 466 | CALL ldf_eiv_init ! eddy induced velocity param. must be done after ldf_tra_init |
|---|
| 467 | CALL ldf_dyn_init ! Lateral ocean momentum physics |
|---|
| 468 | |
|---|
| 469 | ! ! Active tracers |
|---|
| 470 | IF( ln_traqsr ) CALL tra_qsr_init ! penetrative solar radiation qsr |
|---|
| 471 | CALL tra_bbc_init ! bottom heat flux |
|---|
| 472 | CALL tra_bbl_init ! advective (and/or diffusive) bottom boundary layer scheme |
|---|
| 473 | CALL tra_dmp_init ! internal tracer damping |
|---|
| 474 | CALL tra_adv_init ! horizontal & vertical advection |
|---|
| 475 | CALL tra_ldf_init ! lateral mixing |
|---|
| 476 | |
|---|
| 477 | ! ! Dynamics |
|---|
| 478 | IF( lk_c1d ) CALL dyn_dmp_init ! internal momentum damping |
|---|
| 479 | CALL dyn_adv_init ! advection (vector or flux form) |
|---|
| 480 | CALL dyn_vor_init ! vorticity term including Coriolis |
|---|
| 481 | CALL dyn_ldf_init ! lateral mixing |
|---|
| 482 | CALL dyn_hpg_init( Nnn ) ! horizontal gradient of Hydrostatic pressure |
|---|
| 483 | CALL dyn_spg_init ! surface pressure gradient |
|---|
| 484 | |
|---|
| 485 | ! ! Icebergs |
|---|
| 486 | CALL icb_init( rn_Dt, nit000) ! initialise icebergs instance |
|---|
| 487 | |
|---|
| 488 | ! ice shelf |
|---|
| 489 | CALL isf_init( Nbb, Nnn, Naa ) |
|---|
| 490 | #if defined key_top |
|---|
| 491 | ! ! Passive tracers |
|---|
| 492 | CALL trc_init( Nbb, Nnn, Naa ) |
|---|
| 493 | #endif |
|---|
| 494 | IF( l_ldfslp ) CALL ldf_slp_init ! slope of lateral mixing |
|---|
| 495 | |
|---|
| 496 | ! ! Misc. options |
|---|
| 497 | CALL sto_par_init ! Stochastic parametrization |
|---|
| 498 | IF( ln_sto_eos ) CALL sto_pts_init ! RRandom T/S fluctuations |
|---|
| 499 | |
|---|
| 500 | ! ! Diagnostics |
|---|
| 501 | CALL flo_init( Nnn ) ! drifting Floats |
|---|
| 502 | IF( ln_diacfl ) CALL dia_cfl_init ! Initialise CFL diagnostics |
|---|
| 503 | CALL dia_dct_init ! Sections tranports |
|---|
| 504 | CALL dia_hsb_init( Nnn ) ! heat content, salt content and volume budgets |
|---|
| 505 | CALL trd_init( Nnn ) ! Mixed-layer/Vorticity/Integral constraints trends |
|---|
| 506 | CALL dia_obs_init( Nnn ) ! Initialize observational data |
|---|
| 507 | CALL dia_25h_init( Nbb ) ! 25h mean outputs |
|---|
| 508 | CALL dia_detide_init ! Weights computation for daily detiding of model diagnostics |
|---|
| 509 | IF( ln_diaobs ) CALL dia_obs( nit000-1, Nnn ) ! Observation operator for restart |
|---|
| 510 | CALL dia_mlr_init ! Initialisation of IOM context management for multiple-linear-regression analysis |
|---|
| 511 | |
|---|
| 512 | ! ! Assimilation increments |
|---|
| 513 | IF( lk_asminc ) CALL asm_inc_init( Nbb, Nnn, Nrhs ) ! Initialize assimilation increments |
|---|
| 514 | ! |
|---|
| 515 | IF(lwp) WRITE(numout,cform_aaa) ! Flag AAAAAAA |
|---|
| 516 | ! |
|---|
| 517 | IF( ln_timing ) CALL timing_stop( 'nemo_init') |
|---|
| 518 | ! |
|---|
| 519 | END SUBROUTINE nemo_init |
|---|
| 520 | |
|---|
| 521 | |
|---|
| 522 | SUBROUTINE nemo_ctl |
|---|
| 523 | !!---------------------------------------------------------------------- |
|---|
| 524 | !! *** ROUTINE nemo_ctl *** |
|---|
| 525 | !! |
|---|
| 526 | !! ** Purpose : control print setting |
|---|
| 527 | !! |
|---|
| 528 | !! ** Method : - print namctl and namcfg information and check some consistencies |
|---|
| 529 | !!---------------------------------------------------------------------- |
|---|
| 530 | ! |
|---|
| 531 | IF(lwp) THEN ! control print |
|---|
| 532 | WRITE(numout,*) |
|---|
| 533 | WRITE(numout,*) 'nemo_ctl: Control prints' |
|---|
| 534 | WRITE(numout,*) '~~~~~~~~' |
|---|
| 535 | WRITE(numout,*) ' Namelist namctl' |
|---|
| 536 | WRITE(numout,*) ' sn_cfctl%l_runstat = ', sn_cfctl%l_runstat |
|---|
| 537 | WRITE(numout,*) ' sn_cfctl%l_trcstat = ', sn_cfctl%l_trcstat |
|---|
| 538 | WRITE(numout,*) ' sn_cfctl%l_oceout = ', sn_cfctl%l_oceout |
|---|
| 539 | WRITE(numout,*) ' sn_cfctl%l_layout = ', sn_cfctl%l_layout |
|---|
| 540 | WRITE(numout,*) ' sn_cfctl%l_prtctl = ', sn_cfctl%l_prtctl |
|---|
| 541 | WRITE(numout,*) ' sn_cfctl%l_prttrc = ', sn_cfctl%l_prttrc |
|---|
| 542 | WRITE(numout,*) ' sn_cfctl%l_oasout = ', sn_cfctl%l_oasout |
|---|
| 543 | WRITE(numout,*) ' sn_cfctl%procmin = ', sn_cfctl%procmin |
|---|
| 544 | WRITE(numout,*) ' sn_cfctl%procmax = ', sn_cfctl%procmax |
|---|
| 545 | WRITE(numout,*) ' sn_cfctl%procincr = ', sn_cfctl%procincr |
|---|
| 546 | WRITE(numout,*) ' sn_cfctl%ptimincr = ', sn_cfctl%ptimincr |
|---|
| 547 | WRITE(numout,*) ' timing by routine ln_timing = ', ln_timing |
|---|
| 548 | WRITE(numout,*) ' CFL diagnostics ln_diacfl = ', ln_diacfl |
|---|
| 549 | ENDIF |
|---|
| 550 | ! |
|---|
| 551 | IF( .NOT.ln_read_cfg ) ln_closea = .false. ! dealing possible only with a domcfg file |
|---|
| 552 | IF(lwp) THEN ! control print |
|---|
| 553 | WRITE(numout,*) |
|---|
| 554 | WRITE(numout,*) ' Namelist namcfg' |
|---|
| 555 | WRITE(numout,*) ' read domain configuration file ln_read_cfg = ', ln_read_cfg |
|---|
| 556 | WRITE(numout,*) ' filename to be read cn_domcfg = ', TRIM(cn_domcfg) |
|---|
| 557 | WRITE(numout,*) ' keep closed seas in the domain (if exist) ln_closea = ', ln_closea |
|---|
| 558 | WRITE(numout,*) ' create a configuration definition file ln_write_cfg = ', ln_write_cfg |
|---|
| 559 | WRITE(numout,*) ' filename to be written cn_domcfg_out = ', TRIM(cn_domcfg_out) |
|---|
| 560 | WRITE(numout,*) ' use file attribute if exists as i/p j-start ln_use_jattr = ', ln_use_jattr |
|---|
| 561 | ENDIF |
|---|
| 562 | ! |
|---|
| 563 | IF( 1._wp /= SIGN(1._wp,-0._wp) ) CALL ctl_stop( 'nemo_ctl: The intrinsec SIGN function follows f2003 standard.', & |
|---|
| 564 | & 'Compile with key_nosignedzero enabled:', & |
|---|
| 565 | & '--> add -Dkey_nosignedzero to the definition of %CPP in your arch file' ) |
|---|
| 566 | ! |
|---|
| 567 | #if defined key_agrif |
|---|
| 568 | IF( ln_timing ) CALL ctl_stop( 'AGRIF not implemented with ln_timing = true') |
|---|
| 569 | #endif |
|---|
| 570 | ! |
|---|
| 571 | END SUBROUTINE nemo_ctl |
|---|
| 572 | |
|---|
| 573 | |
|---|
| 574 | SUBROUTINE nemo_closefile |
|---|
| 575 | !!---------------------------------------------------------------------- |
|---|
| 576 | !! *** ROUTINE nemo_closefile *** |
|---|
| 577 | !! |
|---|
| 578 | !! ** Purpose : Close the files |
|---|
| 579 | !!---------------------------------------------------------------------- |
|---|
| 580 | ! |
|---|
| 581 | IF( lk_mpp ) CALL mppsync |
|---|
| 582 | ! |
|---|
| 583 | CALL iom_close ! close all input/output files managed by iom_* |
|---|
| 584 | ! |
|---|
| 585 | IF( numstp /= -1 ) CLOSE( numstp ) ! time-step file |
|---|
| 586 | IF( numrun /= -1 ) CLOSE( numrun ) ! run statistics file |
|---|
| 587 | IF( lwm.AND.numond /= -1 ) CLOSE( numond ) ! oce output namelist |
|---|
| 588 | IF( lwm.AND.numoni /= -1 ) CLOSE( numoni ) ! ice output namelist |
|---|
| 589 | IF( numevo_ice /= -1 ) CLOSE( numevo_ice ) ! ice variables (temp. evolution) |
|---|
| 590 | IF( numout /= 6 ) CLOSE( numout ) ! standard model output file |
|---|
| 591 | IF( numdct_vol /= -1 ) CLOSE( numdct_vol ) ! volume transports |
|---|
| 592 | IF( numdct_heat /= -1 ) CLOSE( numdct_heat ) ! heat transports |
|---|
| 593 | IF( numdct_salt /= -1 ) CLOSE( numdct_salt ) ! salt transports |
|---|
| 594 | ! |
|---|
| 595 | numout = 6 ! redefine numout in case it is used after this point... |
|---|
| 596 | ! |
|---|
| 597 | END SUBROUTINE nemo_closefile |
|---|
| 598 | |
|---|
| 599 | |
|---|
| 600 | SUBROUTINE nemo_alloc |
|---|
| 601 | !!---------------------------------------------------------------------- |
|---|
| 602 | !! *** ROUTINE nemo_alloc *** |
|---|
| 603 | !! |
|---|
| 604 | !! ** Purpose : Allocate all the dynamic arrays of the OPA modules |
|---|
| 605 | !! |
|---|
| 606 | !! ** Method : |
|---|
| 607 | !!---------------------------------------------------------------------- |
|---|
| 608 | USE diawri , ONLY : dia_wri_alloc |
|---|
| 609 | USE dom_oce , ONLY : dom_oce_alloc |
|---|
| 610 | USE trc_oce , ONLY : trc_oce_alloc |
|---|
| 611 | USE bdy_oce , ONLY : bdy_oce_alloc |
|---|
| 612 | ! |
|---|
| 613 | INTEGER :: ierr |
|---|
| 614 | !!---------------------------------------------------------------------- |
|---|
| 615 | ! |
|---|
| 616 | ierr = oce_alloc () ! ocean |
|---|
| 617 | ierr = ierr + dia_wri_alloc() |
|---|
| 618 | ierr = ierr + dom_oce_alloc() ! ocean domain |
|---|
| 619 | ierr = ierr + zdf_oce_alloc() ! ocean vertical physics |
|---|
| 620 | ierr = ierr + trc_oce_alloc() ! shared TRC / TRA arrays |
|---|
| 621 | ierr = ierr + bdy_oce_alloc() ! bdy masks (incl. initialization) |
|---|
| 622 | ! |
|---|
| 623 | CALL mpp_sum( 'nemogcm', ierr ) |
|---|
| 624 | IF( ierr /= 0 ) CALL ctl_stop( 'STOP', 'nemo_alloc: unable to allocate standard ocean arrays' ) |
|---|
| 625 | ! |
|---|
| 626 | END SUBROUTINE nemo_alloc |
|---|
| 627 | |
|---|
| 628 | |
|---|
| 629 | SUBROUTINE nemo_set_cfctl(sn_cfctl, setto ) |
|---|
| 630 | !!---------------------------------------------------------------------- |
|---|
| 631 | !! *** ROUTINE nemo_set_cfctl *** |
|---|
| 632 | !! |
|---|
| 633 | !! ** Purpose : Set elements of the output control structure to setto. |
|---|
| 634 | !! |
|---|
| 635 | !! ** Method : Note this routine can be used to switch on/off some |
|---|
| 636 | !! types of output for selected areas. |
|---|
| 637 | !!---------------------------------------------------------------------- |
|---|
| 638 | TYPE(sn_ctl), INTENT(inout) :: sn_cfctl |
|---|
| 639 | LOGICAL , INTENT(in ) :: setto |
|---|
| 640 | !!---------------------------------------------------------------------- |
|---|
| 641 | sn_cfctl%l_runstat = setto |
|---|
| 642 | sn_cfctl%l_trcstat = setto |
|---|
| 643 | sn_cfctl%l_oceout = setto |
|---|
| 644 | sn_cfctl%l_layout = setto |
|---|
| 645 | sn_cfctl%l_prtctl = setto |
|---|
| 646 | sn_cfctl%l_prttrc = setto |
|---|
| 647 | sn_cfctl%l_oasout = setto |
|---|
| 648 | END SUBROUTINE nemo_set_cfctl |
|---|
| 649 | |
|---|
| 650 | !!====================================================================== |
|---|
| 651 | END MODULE nemogcm |
|---|
