| 1 | MODULE nemogcm |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE nemogcm *** |
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| 4 | !! Ocean system : NEMO GCM (ocean dynamics, on-line tracers, biochemistry and sea-ice) |
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| 5 | !!====================================================================== |
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| 6 | !! History : 3.6 ! 2015-12 (A. Ryan) Original code (from OCE/) |
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| 7 | !! 4.0 ! 2016-11 (G. Madec, S. Flavoni) domain configuration / user defined interface |
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| 8 | !!---------------------------------------------------------------------- |
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| 9 | |
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| 10 | !!---------------------------------------------------------------------- |
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| 11 | !! nemo_gcm : solve ocean dynamics, tracer, biogeochemistry and/or sea-ice |
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| 12 | !! nemo_init : initialization of the NEMO system |
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| 13 | !! nemo_ctl : initialisation of the contol print |
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| 14 | !! nemo_closefile: close remaining open files |
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| 15 | !! nemo_alloc : dynamical allocation |
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| 16 | !!---------------------------------------------------------------------- |
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| 17 | USE step_oce ! module used in the ocean time stepping module (step.F90) |
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| 18 | USE domain ! domain initialization (dom_init & dom_cfg routines) |
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| 19 | USE istate ! initial state setting (istate_init routine) |
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| 20 | USE phycst ! physical constant (par_cst routine) |
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| 21 | USE step ! NEMO time-stepping (stp routine) |
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| 22 | USE cpl_oasis3 ! OASIS3 coupling |
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| 23 | USE diaobs ! Observation diagnostics (dia_obs_init routine) |
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| 24 | #if defined key_nemocice_decomp |
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| 25 | USE ice_domain_size, only: nx_global, ny_global |
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| 26 | #endif |
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| 27 | ! ! Stand Alone Observation operator modules |
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| 28 | USE sao_data |
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| 29 | USE sao_intp |
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| 30 | ! |
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| 31 | USE prtctl ! Print control |
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| 32 | USE in_out_manager ! I/O manager |
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| 33 | USE lib_mpp ! distributed memory computing |
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| 34 | USE mppini ! shared/distributed memory setting (mpp_init routine) |
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| 35 | USE lib_fortran ! Fortran utilities (allows no signed zero when 'key_nosignedzero' defined) |
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| 36 | #if defined key_xios |
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| 37 | USE xios ! xIOserver |
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| 38 | #endif |
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| 39 | USE halo_mng |
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| 40 | |
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| 41 | IMPLICIT NONE |
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| 42 | PRIVATE |
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| 43 | |
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| 44 | PUBLIC nemo_gcm ! called by model.F90 |
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| 45 | PUBLIC nemo_init ! needed by AGRIF |
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| 46 | PUBLIC nemo_alloc ! needed by TAM |
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| 47 | |
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| 48 | CHARACTER(lc) :: cform_aaa="( /, 'AAAAAAAA', / ) " ! flag for output listing |
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| 49 | |
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| 50 | !!---------------------------------------------------------------------- |
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| 51 | !! NEMO/OCE 4.0 , NEMO Consortium (2018) |
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| 52 | !! $Id$ |
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| 53 | !! Software governed by the CeCILL license (see ./LICENSE) |
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| 54 | !!---------------------------------------------------------------------- |
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| 55 | CONTAINS |
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| 56 | |
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| 57 | SUBROUTINE nemo_gcm |
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| 58 | !!---------------------------------------------------------------------- |
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| 59 | !! *** SUBROUTINE offline_obs_oper *** |
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| 60 | !! |
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| 61 | !! ** Purpose : To use NEMO components to interpolate model fields |
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| 62 | !! to observation space. |
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| 63 | !! |
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| 64 | !! ** Method : 1. Initialise NEMO |
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| 65 | !! 2. Initialise offline obs_oper |
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| 66 | !! 3. Cycle through match ups |
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| 67 | !! 4. Write results to file |
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| 68 | !!---------------------------------------------------------------------- |
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| 69 | ! |
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| 70 | CALL nemo_init ! Initialise NEMO |
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| 71 | ! |
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| 72 | CALL sao_data_init ! Initialise Stand Alone Observation operator data |
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| 73 | ! |
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| 74 | CALL dia_obs_init ! Initialise obs_operator |
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| 75 | ! |
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| 76 | CALL sao_interp ! Interpolate to observation space |
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| 77 | ! |
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| 78 | CALL dia_obs_wri ! Pipe to output files |
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| 79 | ! |
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| 80 | CALL dia_obs_dealloc ! Reset the obs_oper between |
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| 81 | ! |
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| 82 | IF(lk_mpp) CALL mppstop ! Safely stop MPI (end mpp communications) |
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| 83 | ! |
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| 84 | END SUBROUTINE nemo_gcm |
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| 85 | |
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| 86 | |
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| 87 | SUBROUTINE nemo_init |
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| 88 | !!---------------------------------------------------------------------- |
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| 89 | !! *** ROUTINE nemo_init *** |
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| 90 | !! |
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| 91 | !! ** Purpose : initialization of the NEMO GCM |
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| 92 | !!---------------------------------------------------------------------- |
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| 93 | INTEGER :: ios, ilocal_comm ! local integer |
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| 94 | ! |
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| 95 | NAMELIST/namctl/ sn_cfctl, ln_timing, ln_diacfl, & |
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| 96 | & nn_isplt, nn_jsplt, nn_ictls, nn_ictle, nn_jctls, nn_jctle |
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| 97 | NAMELIST/namcfg/ ln_read_cfg, cn_domcfg, ln_closea, ln_write_cfg, cn_domcfg_out, ln_use_jattr |
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| 98 | !!---------------------------------------------------------------------- |
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| 99 | ! |
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| 100 | cxios_context = 'nemo' |
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| 101 | nn_hls = 1 |
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| 102 | ! |
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| 103 | ! !-------------------------------------------------! |
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| 104 | ! ! set communicator & select the local rank ! |
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| 105 | ! ! must be done as soon as possible to get narea ! |
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| 106 | ! !-------------------------------------------------! |
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| 107 | ! |
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| 108 | #if defined key_xios |
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| 109 | IF( Agrif_Root() ) THEN |
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| 110 | IF( lk_oasis ) THEN |
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| 111 | CALL cpl_init( "oceanx", ilocal_comm ) ! nemo local communicator given by oasis |
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| 112 | CALL xios_initialize( "not used" , local_comm =ilocal_comm ) ! send nemo communicator to xios |
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| 113 | ELSE |
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| 114 | CALL xios_initialize( "for_xios_mpi_id", return_comm=ilocal_comm ) ! nemo local communicator given by xios |
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| 115 | ENDIF |
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| 116 | ENDIF |
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| 117 | CALL mpp_start( ilocal_comm ) |
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| 118 | #else |
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| 119 | IF( lk_oasis ) THEN |
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| 120 | IF( Agrif_Root() ) THEN |
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| 121 | CALL cpl_init( "oceanx", ilocal_comm ) ! nemo local communicator given by oasis |
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| 122 | ENDIF |
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| 123 | CALL mpp_start( ilocal_comm ) |
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| 124 | ELSE |
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| 125 | CALL mpp_start( ) |
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| 126 | ENDIF |
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| 127 | #endif |
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| 128 | ! |
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| 129 | narea = mpprank + 1 ! mpprank: the rank of proc (0 --> mppsize -1 ) |
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| 130 | lwm = (narea == 1) ! control of output namelists |
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| 131 | ! |
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| 132 | ! !---------------------------------------------------------------! |
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| 133 | ! ! Open output files, reference and configuration namelist files ! |
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| 134 | ! !---------------------------------------------------------------! |
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| 135 | ! |
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| 136 | ! open ocean.output as soon as possible to get all output prints (including errors messages) |
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| 137 | IF( lwm ) CALL ctl_opn( numout, 'ocean.output', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. ) |
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| 138 | ! open reference and configuration namelist files |
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| 139 | CALL load_nml( numnam_ref, 'namelist_ref', -1, lwm ) |
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| 140 | CALL load_nml( numnam_cfg, 'namelist_cfg', -1, lwm ) |
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| 141 | IF( lwm ) CALL ctl_opn( numond, 'output.namelist.dyn', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. ) |
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| 142 | ! open /dev/null file to be able to supress output write easily |
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| 143 | IF( Agrif_Root() ) THEN |
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| 144 | CALL ctl_opn( numnul, '/dev/null', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. ) |
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| 145 | #ifdef key_agrif |
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| 146 | ELSE |
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| 147 | numnul = Agrif_Parent(numnul) |
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| 148 | #endif |
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| 149 | ENDIF |
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| 150 | ! |
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| 151 | ! !--------------------! |
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| 152 | ! ! Open listing units ! -> need sn_cfctl from namctl to define lwp |
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| 153 | ! !--------------------! |
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| 154 | ! |
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| 155 | READ ( numnam_ref, namctl, IOSTAT = ios, ERR = 901 ) |
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| 156 | 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namctl in reference namelist' ) |
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| 157 | READ ( numnam_cfg, namctl, IOSTAT = ios, ERR = 902 ) |
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| 158 | 902 IF( ios > 0 ) CALL ctl_nam ( ios , 'namctl in configuration namelist' ) |
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| 159 | ! |
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| 160 | ! finalize the definition of namctl variables |
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| 161 | IF( narea < sn_cfctl%procmin .OR. narea > sn_cfctl%procmax .OR. MOD( narea - sn_cfctl%procmin, sn_cfctl%procincr ) /= 0 ) & |
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| 162 | & CALL nemo_set_cfctl( sn_cfctl, .FALSE. ) |
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| 163 | ! |
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| 164 | lwp = (narea == 1) .OR. sn_cfctl%l_oceout ! control of all listing output print |
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| 165 | ! |
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| 166 | IF(lwp) THEN ! open listing units |
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| 167 | ! |
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| 168 | IF( .NOT. lwm ) & ! alreay opened for narea == 1 |
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| 169 | & CALL ctl_opn( numout, 'ocean.output', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE., narea ) |
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| 170 | ! |
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| 171 | WRITE(numout,*) |
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| 172 | WRITE(numout,*) ' CNRS - NERC - Met OFFICE - MERCATOR-ocean - CMCC' |
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| 173 | WRITE(numout,*) ' NEMO team' |
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| 174 | WRITE(numout,*) ' Stand Alone Observation operator' |
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| 175 | WRITE(numout,*) ' NEMO version 4.0 (2019) ' |
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| 176 | WRITE(numout,*) |
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| 177 | WRITE(numout,*) " ._ ._ ._ ._ ._ " |
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| 178 | WRITE(numout,*) " _.-._)`\_.-._)`\_.-._)`\_.-._)`\_.-._)`\_ " |
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| 179 | WRITE(numout,*) |
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| 180 | WRITE(numout,*) " o _, _, " |
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| 181 | WRITE(numout,*) " o .' ( .-' / " |
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| 182 | WRITE(numout,*) " o _/..._'. .' / " |
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| 183 | WRITE(numout,*) " ( o .-'` ` '-./ _.' " |
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| 184 | WRITE(numout,*) " ) ( o) ;= <_ ( " |
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| 185 | WRITE(numout,*) " ( '-.,\\__ __.-;`\ '. ) " |
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| 186 | WRITE(numout,*) " ) ) \) |`\ \) '. \ ( ( " |
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| 187 | WRITE(numout,*) " ( ( \_/ '-._\ ) ) " |
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| 188 | WRITE(numout,*) " ) ) jgs ` ( ( " |
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| 189 | WRITE(numout,*) " ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ " |
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| 190 | WRITE(numout,*) |
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| 191 | ! |
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| 192 | WRITE(numout,cform_aaa) ! Flag AAAAAAA |
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| 193 | ! |
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| 194 | ENDIF |
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| 195 | ! |
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| 196 | IF(lwm) WRITE( numond, namctl ) |
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| 197 | ! |
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| 198 | ! !------------------------------------! |
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| 199 | ! ! Set global domain size parameters ! |
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| 200 | ! !------------------------------------! |
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| 201 | ! |
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| 202 | READ ( numnam_ref, namcfg, IOSTAT = ios, ERR = 903 ) |
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| 203 | 903 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namcfg in reference namelist' ) |
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| 204 | READ ( numnam_cfg, namcfg, IOSTAT = ios, ERR = 904 ) |
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| 205 | 904 IF( ios > 0 ) CALL ctl_nam ( ios , 'namcfg in configuration namelist' ) |
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| 206 | ! |
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| 207 | IF( ln_read_cfg ) THEN ! Read sizes in domain configuration file |
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| 208 | CALL domain_cfg ( cn_cfg, nn_cfg, Ni0glo, Nj0glo, jpkglo, l_Iperio, l_Jperio, l_NFold, c_NFtype ) |
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| 209 | ELSE ! user-defined namelist |
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| 210 | CALL usr_def_nam( cn_cfg, nn_cfg, Ni0glo, Nj0glo, jpkglo, l_Iperio, l_Jperio, l_NFold, c_NFtype ) |
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| 211 | ENDIF |
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| 212 | ! |
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| 213 | IF(lwm) WRITE( numond, namcfg ) |
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| 214 | ! |
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| 215 | ! !-----------------------------------------! |
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| 216 | ! ! mpp parameters and domain decomposition ! |
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| 217 | ! !-----------------------------------------! |
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| 218 | CALL mpp_init |
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| 219 | |
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| 220 | CALL halo_mng_init() |
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| 221 | ! Now we know the dimensions of the grid and numout has been set: we can allocate arrays |
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| 222 | CALL nemo_alloc() |
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| 223 | |
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| 224 | ! !-------------------------------! |
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| 225 | ! ! NEMO general initialization ! |
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| 226 | ! !-------------------------------! |
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| 227 | |
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| 228 | CALL nemo_ctl ! Control prints |
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| 229 | ! |
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| 230 | ! ! General initialization |
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| 231 | IF( ln_timing ) CALL timing_init ! timing |
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| 232 | IF( ln_timing ) CALL timing_start( 'nemo_init') |
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| 233 | ! |
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| 234 | CALL phy_cst ! Physical constants |
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| 235 | CALL eos_init ! Equation of state |
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| 236 | CALL dom_init( Nbb, Nnn, Naa ) ! Domain |
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| 237 | |
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| 238 | |
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| 239 | IF( sn_cfctl%l_prtctl ) & |
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| 240 | & CALL prt_ctl_init ! Print control |
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| 241 | |
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| 242 | CALL istate_init ! ocean initial state (Dynamics and tracers) |
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| 243 | END SUBROUTINE nemo_init |
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| 244 | |
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| 245 | |
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| 246 | SUBROUTINE nemo_ctl |
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| 247 | !!---------------------------------------------------------------------- |
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| 248 | !! *** ROUTINE nemo_ctl *** |
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| 249 | !! |
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| 250 | !! ** Purpose : control print setting |
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| 251 | !! |
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| 252 | !! ** Method : - print namctl and namcfg information and check some consistencies |
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| 253 | !!---------------------------------------------------------------------- |
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| 254 | ! |
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| 255 | IF(lwp) THEN ! control print |
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| 256 | WRITE(numout,*) |
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| 257 | WRITE(numout,*) 'nemo_ctl: Control prints' |
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| 258 | WRITE(numout,*) '~~~~~~~~' |
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| 259 | WRITE(numout,*) ' Namelist namctl' |
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| 260 | WRITE(numout,*) ' sn_cfctl%l_runstat = ', sn_cfctl%l_runstat |
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| 261 | WRITE(numout,*) ' sn_cfctl%l_trcstat = ', sn_cfctl%l_trcstat |
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| 262 | WRITE(numout,*) ' sn_cfctl%l_oceout = ', sn_cfctl%l_oceout |
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| 263 | WRITE(numout,*) ' sn_cfctl%l_layout = ', sn_cfctl%l_layout |
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| 264 | WRITE(numout,*) ' sn_cfctl%l_prtctl = ', sn_cfctl%l_prtctl |
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| 265 | WRITE(numout,*) ' sn_cfctl%l_prttrc = ', sn_cfctl%l_prttrc |
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| 266 | WRITE(numout,*) ' sn_cfctl%l_oasout = ', sn_cfctl%l_oasout |
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| 267 | WRITE(numout,*) ' sn_cfctl%procmin = ', sn_cfctl%procmin |
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| 268 | WRITE(numout,*) ' sn_cfctl%procmax = ', sn_cfctl%procmax |
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| 269 | WRITE(numout,*) ' sn_cfctl%procincr = ', sn_cfctl%procincr |
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| 270 | WRITE(numout,*) ' sn_cfctl%ptimincr = ', sn_cfctl%ptimincr |
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| 271 | WRITE(numout,*) ' timing by routine ln_timing = ', ln_timing |
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| 272 | WRITE(numout,*) ' CFL diagnostics ln_diacfl = ', ln_diacfl |
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| 273 | ENDIF |
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| 274 | ! |
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| 275 | IF( .NOT.ln_read_cfg ) ln_closea = .false. ! dealing possible only with a domcfg file |
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| 276 | IF(lwp) THEN ! control print |
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| 277 | WRITE(numout,*) |
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| 278 | WRITE(numout,*) ' Namelist namcfg' |
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| 279 | WRITE(numout,*) ' read domain configuration file ln_read_cfg = ', ln_read_cfg |
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| 280 | WRITE(numout,*) ' filename to be read cn_domcfg = ', TRIM(cn_domcfg) |
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| 281 | WRITE(numout,*) ' keep closed seas in the domain (if exist) ln_closea = ', ln_closea |
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| 282 | WRITE(numout,*) ' create a configuration definition file ln_write_cfg = ', ln_write_cfg |
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| 283 | WRITE(numout,*) ' filename to be written cn_domcfg_out = ', TRIM(cn_domcfg_out) |
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| 284 | WRITE(numout,*) ' use file attribute if exists as i/p j-start ln_use_jattr = ', ln_use_jattr |
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| 285 | ENDIF |
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| 286 | ! |
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| 287 | IF( 1._wp /= SIGN(1._wp,-0._wp) ) CALL ctl_stop( 'nemo_ctl: The intrinsec SIGN function follows f2003 standard.', & |
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| 288 | & 'Compile with key_nosignedzero enabled:', & |
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| 289 | & '--> add -Dkey_nosignedzero to the definition of %CPP in your arch file' ) |
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| 290 | ! |
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| 291 | END SUBROUTINE nemo_ctl |
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| 292 | |
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| 293 | |
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| 294 | SUBROUTINE nemo_closefile |
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| 295 | !!---------------------------------------------------------------------- |
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| 296 | !! *** ROUTINE nemo_closefile *** |
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| 297 | !! |
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| 298 | !! ** Purpose : Close the files |
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| 299 | !!---------------------------------------------------------------------- |
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| 300 | ! |
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| 301 | IF( lk_mpp ) CALL mppsync |
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| 302 | ! |
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| 303 | CALL iom_close ! close all input/output files managed by iom_* |
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| 304 | ! |
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| 305 | IF( numstp /= -1 ) CLOSE( numstp ) ! time-step file |
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| 306 | IF( numrun /= -1 ) CLOSE( numrun ) ! run statistics file |
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| 307 | IF( lwm.AND.numond /= -1 ) CLOSE( numond ) ! oce output namelist |
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| 308 | IF( lwm.AND.numoni /= -1 ) CLOSE( numoni ) ! ice output namelist |
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| 309 | IF( numevo_ice /= -1 ) CLOSE( numevo_ice ) ! ice variables (temp. evolution) |
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| 310 | IF( numout /= 6 ) CLOSE( numout ) ! standard model output file |
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| 311 | IF( numdct_vol /= -1 ) CLOSE( numdct_vol ) ! volume transports |
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| 312 | IF( numdct_heat /= -1 ) CLOSE( numdct_heat ) ! heat transports |
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| 313 | IF( numdct_salt /= -1 ) CLOSE( numdct_salt ) ! salt transports |
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| 314 | ! |
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| 315 | numout = 6 ! redefine numout in case it is used after this point... |
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| 316 | ! |
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| 317 | END SUBROUTINE nemo_closefile |
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| 318 | |
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| 319 | |
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| 320 | SUBROUTINE nemo_alloc |
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| 321 | !!---------------------------------------------------------------------- |
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| 322 | !! *** ROUTINE nemo_alloc *** |
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| 323 | !! |
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| 324 | !! ** Purpose : Allocate all the dynamic arrays of the OCE modules |
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| 325 | !! |
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| 326 | !! ** Method : |
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| 327 | !!---------------------------------------------------------------------- |
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| 328 | USE diawri , ONLY: dia_wri_alloc |
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| 329 | USE dom_oce , ONLY: dom_oce_alloc |
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| 330 | ! |
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| 331 | INTEGER :: ierr |
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| 332 | !!---------------------------------------------------------------------- |
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| 333 | ! |
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| 334 | ierr = oce_alloc () ! ocean |
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| 335 | ierr = ierr + dia_wri_alloc () |
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| 336 | ierr = ierr + dom_oce_alloc () ! ocean domain |
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| 337 | ! |
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| 338 | CALL mpp_sum( 'nemogcm', ierr ) |
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| 339 | IF( ierr /= 0 ) CALL ctl_stop( 'STOP', 'nemo_alloc : unable to allocate standard ocean arrays' ) |
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| 340 | ! |
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| 341 | END SUBROUTINE nemo_alloc |
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| 342 | |
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| 343 | SUBROUTINE nemo_set_cfctl(sn_cfctl, setto ) |
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| 344 | !!---------------------------------------------------------------------- |
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| 345 | !! *** ROUTINE nemo_set_cfctl *** |
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| 346 | !! |
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| 347 | !! ** Purpose : Set elements of the output control structure to setto. |
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| 348 | !! |
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| 349 | !! ** Method : Note this routine can be used to switch on/off some |
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| 350 | !! types of output for selected areas. |
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| 351 | !!---------------------------------------------------------------------- |
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| 352 | TYPE(sn_ctl), INTENT(inout) :: sn_cfctl |
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| 353 | LOGICAL , INTENT(in ) :: setto |
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| 354 | !!---------------------------------------------------------------------- |
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| 355 | sn_cfctl%l_runstat = setto |
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| 356 | sn_cfctl%l_trcstat = setto |
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| 357 | sn_cfctl%l_oceout = setto |
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| 358 | sn_cfctl%l_layout = setto |
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| 359 | sn_cfctl%l_prtctl = setto |
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| 360 | sn_cfctl%l_prttrc = setto |
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| 361 | sn_cfctl%l_oasout = setto |
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| 362 | END SUBROUTINE nemo_set_cfctl |
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| 363 | |
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| 364 | !!====================================================================== |
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| 365 | END MODULE nemogcm |
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| 366 | |
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