[10227] | 1 | MODULE p4zlim |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE p4zlim *** |
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[15459] | 4 | !! TOP : Computes the nutrient limitation terms of phytoplankton |
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[10227] | 5 | !!====================================================================== |
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| 6 | !! History : 1.0 ! 2004 (O. Aumont) Original code |
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| 7 | !! 2.0 ! 2007-12 (C. Ethe, G. Madec) F90 |
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| 8 | !! 3.4 ! 2011-04 (O. Aumont, C. Ethe) Limitation for iron modelled in quota |
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| 9 | !!---------------------------------------------------------------------- |
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| 10 | !! p4z_lim : Compute the nutrients limitation terms |
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| 11 | !! p4z_lim_init : Read the namelist |
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| 12 | !!---------------------------------------------------------------------- |
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| 13 | USE oce_trc ! Shared ocean-passive tracers variables |
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| 14 | USE trc ! Tracers defined |
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| 15 | USE sms_pisces ! PISCES variables |
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[15459] | 16 | USE iom ! I/O manager |
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[10227] | 17 | |
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| 18 | IMPLICIT NONE |
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| 19 | PRIVATE |
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| 20 | |
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[15459] | 21 | PUBLIC p4z_lim ! called in p4zbio.F90 |
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| 22 | PUBLIC p4z_lim_init ! called in trcsms_pisces.F90 |
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| 23 | PUBLIC p4z_lim_alloc ! called in trcini_pisces.F90 |
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[10227] | 24 | |
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| 25 | !! * Shared module variables |
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| 26 | REAL(wp), PUBLIC :: concnno3 !: NO3, PO4 half saturation |
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| 27 | REAL(wp), PUBLIC :: concdno3 !: Phosphate half saturation for diatoms |
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[15459] | 28 | REAL(wp), PUBLIC :: concnnh4 !: NH4 half saturation for nanophyto |
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[10227] | 29 | REAL(wp), PUBLIC :: concdnh4 !: NH4 half saturation for diatoms |
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| 30 | REAL(wp), PUBLIC :: concnfer !: Iron half saturation for nanophyto |
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| 31 | REAL(wp), PUBLIC :: concdfer !: Iron half saturation for diatoms |
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| 32 | REAL(wp), PUBLIC :: concbno3 !: NO3 half saturation for bacteria |
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| 33 | REAL(wp), PUBLIC :: concbnh4 !: NH4 half saturation for bacteria |
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| 34 | REAL(wp), PUBLIC :: xsizedia !: Minimum size criteria for diatoms |
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| 35 | REAL(wp), PUBLIC :: xsizephy !: Minimum size criteria for nanophyto |
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| 36 | REAL(wp), PUBLIC :: xsizern !: Size ratio for nanophytoplankton |
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| 37 | REAL(wp), PUBLIC :: xsizerd !: Size ratio for diatoms |
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| 38 | REAL(wp), PUBLIC :: xksi1 !: half saturation constant for Si uptake |
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| 39 | REAL(wp), PUBLIC :: xksi2 !: half saturation constant for Si/C |
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| 40 | REAL(wp), PUBLIC :: xkdoc !: 2nd half-sat. of DOC remineralization |
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| 41 | REAL(wp), PUBLIC :: concbfe !: Fe half saturation for bacteria |
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| 42 | REAL(wp), PUBLIC :: qnfelim !: optimal Fe quota for nanophyto |
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| 43 | REAL(wp), PUBLIC :: qdfelim !: optimal Fe quota for diatoms |
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| 44 | REAL(wp), PUBLIC :: caco3r !: mean rainratio |
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| 45 | |
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| 46 | !!* Phytoplankton limitation terms |
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[15459] | 47 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xnanono3 !: Nanophyto limitation by NO3 |
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| 48 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xdiatno3 !: Diatoms limitation by NO3 |
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| 49 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xnanonh4 !: Nanophyto limitation by NH4 |
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| 50 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xdiatnh4 !: Diatoms limitation by NH4 |
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| 51 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xnanopo4 !: Nanophyto limitation by PO4 |
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| 52 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xdiatpo4 !: Diatoms limitation by PO4 |
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| 53 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xlimphy !: Nutrient limitation term of nanophytoplankton |
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| 54 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xlimdia !: Nutrient limitation term of diatoms |
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| 55 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xlimnfe !: Nanophyto limitation by Iron |
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| 56 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xlimdfe !: Diatoms limitation by iron |
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| 57 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xlimsi !: Diatoms limitation by Si |
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| 58 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xlimbac !: Bacterial limitation term |
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| 59 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xlimbacl !: Bacterial limitation term |
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| 60 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: concdfe !: Limitation of diatoms uptake of Fe |
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| 61 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: concnfe !: Limitation of Nano uptake of Fe |
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| 62 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xnanofer !: Limitation of Fe uptake by nanophyto |
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| 63 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xdiatfer !: Limitation of Fe uptake by diatoms |
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| 64 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: xqfuncfecd, xqfuncfecn |
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[10227] | 65 | |
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[15459] | 66 | ! Coefficient for iron limitation following Flynn and Hipkin (1999) |
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[10227] | 67 | REAL(wp) :: xcoef1 = 0.0016 / 55.85 |
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[15459] | 68 | REAL(wp) :: xcoef2 = 1.21E-5 * 14. / 55.85 / 7.3125 * 0.5 * 1.5 |
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| 69 | REAL(wp) :: xcoef3 = 1.15E-4 * 14. / 55.85 / 7.3125 * 0.5 |
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[10227] | 70 | |
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[12377] | 71 | !! * Substitutions |
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| 72 | # include "do_loop_substitute.h90" |
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[10227] | 73 | !!---------------------------------------------------------------------- |
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| 74 | !! NEMO/TOP 4.0 , NEMO Consortium (2018) |
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| 75 | !! $Id: p4zlim.F90 10069 2018-08-28 14:12:24Z nicolasmartin $ |
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| 76 | !! Software governed by the CeCILL license (see ./LICENSE) |
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| 77 | !!---------------------------------------------------------------------- |
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| 78 | CONTAINS |
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| 79 | |
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[12377] | 80 | SUBROUTINE p4z_lim( kt, knt, Kbb, Kmm ) |
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[10227] | 81 | !!--------------------------------------------------------------------- |
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| 82 | !! *** ROUTINE p4z_lim *** |
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| 83 | !! |
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| 84 | !! ** Purpose : Compute the co-limitations by the various nutrients |
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[15459] | 85 | !! for the various phytoplankton species |
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[10227] | 86 | !! |
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[15459] | 87 | !! ** Method : - Limitation follows the Liebieg law of the minimum |
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| 88 | !! - Monod approach for N, P and Si. Quota approach |
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| 89 | !! for Iron |
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[10227] | 90 | !!--------------------------------------------------------------------- |
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| 91 | INTEGER, INTENT(in) :: kt, knt |
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[12377] | 92 | INTEGER, INTENT(in) :: Kbb, Kmm ! time level indices |
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[10227] | 93 | ! |
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| 94 | INTEGER :: ji, jj, jk |
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[15459] | 95 | REAL(wp) :: zlim1, zlim2, zlim3, zlim4, zcoef |
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[10227] | 96 | REAL(wp) :: z1_trbdia, z1_trbphy, ztem1, ztem2, zetot1, zetot2 |
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[15459] | 97 | REAL(wp) :: zdenom, zratio, zironmin, zbactno3, zbactnh4 |
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[10227] | 98 | REAL(wp) :: zconc1d, zconc1dnh4, zconc0n, zconc0nnh4 |
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[15459] | 99 | REAL(wp) :: fananof, fadiatf, znutlim, zfalim |
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| 100 | REAL(wp) :: znutlimtot, zlimno3, zlimnh4, zbiron |
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[10227] | 101 | !!--------------------------------------------------------------------- |
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| 102 | ! |
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| 103 | IF( ln_timing ) CALL timing_start('p4z_lim') |
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| 104 | ! |
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[15459] | 105 | sizena(:,:,:) = 1.0 ; sizeda(:,:,:) = 1.0 |
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| 106 | ! |
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[15090] | 107 | DO_3D( nn_hls, nn_hls, nn_hls, nn_hls, 1, jpkm1) |
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[12377] | 108 | |
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| 109 | ! Computation of a variable Ks for iron on diatoms taking into account |
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| 110 | ! that increasing biomass is made of generally bigger cells |
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[15459] | 111 | ! The allometric relationship is classical. |
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[12377] | 112 | !------------------------------------------------ |
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| 113 | z1_trbphy = 1. / ( tr(ji,jj,jk,jpphy,Kbb) + rtrn ) |
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| 114 | z1_trbdia = 1. / ( tr(ji,jj,jk,jpdia,Kbb) + rtrn ) |
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[10227] | 115 | |
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[15459] | 116 | concnfe(ji,jj,jk) = concnfer * sizen(ji,jj,jk)**0.81 |
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| 117 | zconc0n = concnno3 * sizen(ji,jj,jk)**0.81 |
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| 118 | zconc0nnh4 = concnnh4 * sizen(ji,jj,jk)**0.81 |
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[10227] | 119 | |
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[15459] | 120 | concdfe(ji,jj,jk) = concdfer * sized(ji,jj,jk)**0.81 |
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| 121 | zconc1d = concdno3 * sized(ji,jj,jk)**0.81 |
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| 122 | zconc1dnh4 = concdnh4 * sized(ji,jj,jk)**0.81 |
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[10227] | 123 | |
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[15459] | 124 | ! Computation of the optimal allocation parameters |
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| 125 | ! Based on the different papers by Pahlow et al., and |
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| 126 | ! Smith et al. |
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| 127 | ! --------------------------------------------------- |
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[10227] | 128 | |
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[15459] | 129 | ! Nanophytoplankton |
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| 130 | zbiron = ( 75.0 * ( 1.0 - plig(ji,jj,jk) ) + plig(ji,jj,jk) ) * biron(ji,jj,jk) |
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| 131 | znutlim = zbiron / concnfe(ji,jj,jk) |
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| 132 | fananof = MAX(0.01, MIN(0.99, 1. / ( SQRT(znutlim) + 1.) ) ) |
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| 133 | |
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| 134 | ! Diatoms |
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| 135 | znutlim = zbiron / concdfe(ji,jj,jk) |
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| 136 | fadiatf = MAX(0.01, MIN(0.99, 1. / ( SQRT(znutlim) + 1.) ) ) |
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| 137 | |
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| 138 | ! Michaelis-Menten Limitation term by nutrients of |
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| 139 | ! heterotrophic bacteria |
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| 140 | ! ------------------------------------------------- |
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| 141 | zlimnh4 = tr(ji,jj,jk,jpnh4,Kbb) / ( concbno3 + tr(ji,jj,jk,jpnh4,Kbb) ) |
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| 142 | zlimno3 = tr(ji,jj,jk,jpno3,Kbb) / ( concbno3 + tr(ji,jj,jk,jpno3,Kbb) ) |
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| 143 | znutlimtot = ( tr(ji,jj,jk,jpnh4,Kbb) + tr(ji,jj,jk,jpno3,Kbb) ) / ( concbno3 + tr(ji,jj,jk,jpnh4,Kbb) + tr(ji,jj,jk,jpno3,Kbb) ) |
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| 144 | zbactnh4 = znutlimtot * 5.0 * zlimnh4 / ( zlimno3 + 5.0 * zlimnh4 + rtrn ) |
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| 145 | zbactno3 = znutlimtot * zlimno3 / ( zlimno3 + 5.0 * zlimnh4 + rtrn ) |
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| 146 | ! |
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| 147 | zlim1 = zbactno3 + zbactnh4 |
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| 148 | zlim2 = tr(ji,jj,jk,jppo4,Kbb) / ( tr(ji,jj,jk,jppo4,Kbb) + concbnh4 ) |
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| 149 | zlim3 = tr(ji,jj,jk,jpfer,Kbb) / ( concbfe + tr(ji,jj,jk,jpfer,Kbb) ) |
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| 150 | zlim4 = tr(ji,jj,jk,jpdoc,Kbb) / ( xkdoc + tr(ji,jj,jk,jpdoc,Kbb) ) |
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| 151 | ! Xlimbac is used for DOC solubilization whereas xlimbacl |
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| 152 | ! is used for all the other bacterial-dependent terms |
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| 153 | ! ------------------------------------------------------- |
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| 154 | xlimbacl(ji,jj,jk) = MIN( zlim1, zlim2, zlim3 ) |
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| 155 | xlimbac (ji,jj,jk) = MIN( zlim1, zlim2, zlim3 ) * zlim4 |
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| 156 | |
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| 157 | ! Michaelis-Menten Limitation term by nutrients: Nanophyto |
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| 158 | ! Optimal parameterization by Smith and Pahlow series of |
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| 159 | ! papers is used. Optimal allocation is supposed independant |
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| 160 | ! for all nutrients. |
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| 161 | ! -------------------------------------------------------- |
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| 162 | |
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| 163 | ! Limitation of Fe uptake (Quota formalism) |
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| 164 | zfalim = (1.-fananof) / fananof |
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| 165 | xnanofer(ji,jj,jk) = (1. - fananof) * zbiron / ( zbiron + zfalim * concnfe(ji,jj,jk) ) |
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| 166 | |
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| 167 | ! Limitation of nanophytoplankton growth |
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| 168 | zlimnh4 = tr(ji,jj,jk,jpnh4,Kbb) / ( zconc0n + tr(ji,jj,jk,jpnh4,Kbb) ) |
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| 169 | zlimno3 = tr(ji,jj,jk,jpno3,Kbb) / ( zconc0n + tr(ji,jj,jk,jpno3,Kbb) ) |
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| 170 | znutlimtot = ( tr(ji,jj,jk,jpnh4,Kbb) + tr(ji,jj,jk,jpno3,Kbb) ) / ( zconc0n + tr(ji,jj,jk,jpnh4,Kbb) + tr(ji,jj,jk,jpno3,Kbb) ) |
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| 171 | xnanonh4(ji,jj,jk) = znutlimtot * 5.0 * zlimnh4 / ( zlimno3 + 5.0 * zlimnh4 + rtrn ) |
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| 172 | xnanono3(ji,jj,jk) = znutlimtot * zlimno3 / ( zlimno3 + 5.0 * zlimnh4 + rtrn ) |
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| 173 | ! |
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| 174 | zlim1 = xnanono3(ji,jj,jk) + xnanonh4(ji,jj,jk) |
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| 175 | zlim2 = tr(ji,jj,jk,jppo4,Kbb) / ( tr(ji,jj,jk,jppo4,Kbb) + zconc0nnh4 ) |
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| 176 | zratio = tr(ji,jj,jk,jpnfe,Kbb) * z1_trbphy |
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| 177 | |
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| 178 | ! The minimum iron quota depends on the size of PSU, respiration |
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| 179 | ! and the reduction of nitrate following the parameterization |
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| 180 | ! proposed by Flynn and Hipkin (1999) |
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| 181 | zironmin = xcoef1 * tr(ji,jj,jk,jpnch,Kbb) * z1_trbphy + xcoef2 * zlim1 + xcoef3 * xnanono3(ji,jj,jk) |
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| 182 | xqfuncfecn(ji,jj,jk) = zironmin + qnfelim |
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| 183 | zlim3 = MAX( 0.,( zratio - zironmin ) / qnfelim ) |
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| 184 | xnanopo4(ji,jj,jk) = zlim2 |
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| 185 | xlimnfe (ji,jj,jk) = MIN( 1., zlim3 ) |
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| 186 | xlimphy (ji,jj,jk) = MIN( zlim1, zlim2, zlim3 ) |
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| 187 | |
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| 188 | ! Michaelis-Menten Limitation term by nutrients : Diatoms |
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| 189 | ! ------------------------------------------------------- |
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| 190 | ! Limitation of Fe uptake (Quota formalism) |
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| 191 | zfalim = (1.-fadiatf) / fadiatf |
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| 192 | xdiatfer(ji,jj,jk) = (1. - fadiatf) * zbiron / ( zbiron + zfalim * concdfe(ji,jj,jk) ) |
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| 193 | |
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| 194 | ! Limitation of diatoms growth |
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| 195 | zlimnh4 = tr(ji,jj,jk,jpnh4,Kbb) / ( zconc1d + tr(ji,jj,jk,jpnh4,Kbb) ) |
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| 196 | zlimno3 = tr(ji,jj,jk,jpno3,Kbb) / ( zconc1d + tr(ji,jj,jk,jpno3,Kbb) ) |
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| 197 | znutlimtot = ( tr(ji,jj,jk,jpnh4,Kbb) + tr(ji,jj,jk,jpno3,Kbb) ) / ( zconc1d + tr(ji,jj,jk,jpnh4,Kbb) + tr(ji,jj,jk,jpno3,Kbb) ) |
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| 198 | xdiatnh4(ji,jj,jk) = znutlimtot * 5.0 * zlimnh4 / ( zlimno3 + 5.0 * zlimnh4 + rtrn ) |
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| 199 | xdiatno3(ji,jj,jk) = znutlimtot * zlimno3 / ( zlimno3 + 5.0 * zlimnh4 + rtrn ) |
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| 200 | ! |
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| 201 | zlim1 = xdiatno3(ji,jj,jk) + xdiatnh4(ji,jj,jk) |
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| 202 | zlim2 = tr(ji,jj,jk,jppo4,Kbb) / ( tr(ji,jj,jk,jppo4,Kbb) + zconc1dnh4 ) |
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| 203 | zlim3 = tr(ji,jj,jk,jpsil,Kbb) / ( tr(ji,jj,jk,jpsil,Kbb) + xksi(ji,jj) + rtrn ) |
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| 204 | zratio = tr(ji,jj,jk,jpdfe,Kbb) * z1_trbdia |
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| 205 | |
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| 206 | ! The minimum iron quota depends on the size of PSU, respiration |
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| 207 | ! and the reduction of nitrate following the parameterization |
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| 208 | ! proposed by Flynn and Hipkin (1999) |
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| 209 | zironmin = xcoef1 * tr(ji,jj,jk,jpdch,Kbb) * z1_trbdia + xcoef2 * zlim1 + xcoef3 * xdiatno3(ji,jj,jk) |
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| 210 | xqfuncfecd(ji,jj,jk) = zironmin + qdfelim |
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| 211 | zlim4 = MAX( 0., ( zratio - zironmin ) / qdfelim ) |
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| 212 | xdiatpo4(ji,jj,jk) = zlim2 |
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| 213 | xlimdfe (ji,jj,jk) = MIN( 1., zlim4 ) |
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| 214 | xlimdia (ji,jj,jk) = MIN( zlim1, zlim2, zlim3, zlim4 ) |
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| 215 | xlimsi (ji,jj,jk) = MIN( zlim1, zlim2, zlim4 ) |
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[12377] | 216 | END_3D |
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[10227] | 217 | |
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[15459] | 218 | |
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| 219 | ! Size estimation of phytoplankton based on total biomass |
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| 220 | ! Assumes that larger biomass implies addition of larger cells |
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| 221 | ! ------------------------------------------------------------ |
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| 222 | DO_3D( nn_hls, nn_hls, nn_hls, nn_hls, 1, jpkm1) |
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| 223 | zcoef = tr(ji,jj,jk,jpphy,Kbb) - MIN(xsizephy, tr(ji,jj,jk,jpphy,Kbb) ) |
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| 224 | sizena(ji,jj,jk) = 1. + ( xsizern -1.0 ) * zcoef / ( xsizephy + zcoef ) |
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| 225 | zcoef = tr(ji,jj,jk,jpdia,Kbb) - MIN(xsizedia, tr(ji,jj,jk,jpdia,Kbb) ) |
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| 226 | sizeda(ji,jj,jk) = 1. + ( xsizerd - 1.0 ) * zcoef / ( xsizedia + zcoef ) |
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| 227 | END_3D |
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| 228 | |
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| 229 | |
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[10227] | 230 | ! Compute the fraction of nanophytoplankton that is made of calcifiers |
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[15459] | 231 | ! This is a purely adhoc formulation described in Aumont et al. (2015) |
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| 232 | ! This fraction depends on nutrient limitation, light, temperature |
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[10227] | 233 | ! -------------------------------------------------------------------- |
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[15090] | 234 | DO_3D( nn_hls, nn_hls, nn_hls, nn_hls, 1, jpkm1) |
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[15459] | 235 | zlim1 = xnanonh4(ji,jj,jk) + xnanono3(ji,jj,jk) |
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[12377] | 236 | zlim2 = tr(ji,jj,jk,jppo4,Kbb) / ( tr(ji,jj,jk,jppo4,Kbb) + concnnh4 ) |
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[15459] | 237 | zlim3 = tr(ji,jj,jk,jpfer,Kbb) / ( tr(ji,jj,jk,jpfer,Kbb) + 6.E-11 ) |
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| 238 | ztem1 = MAX( 0., ts(ji,jj,jk,jp_tem,Kmm) + 1.8) |
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[12377] | 239 | ztem2 = ts(ji,jj,jk,jp_tem,Kmm) - 10. |
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| 240 | zetot1 = MAX( 0., etot_ndcy(ji,jj,jk) - 1.) / ( 4. + etot_ndcy(ji,jj,jk) ) |
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[15459] | 241 | zetot2 = 30. / ( 30.0 + etot_ndcy(ji,jj,jk) ) |
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[10227] | 242 | |
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[12377] | 243 | xfracal(ji,jj,jk) = caco3r * MIN( zlim1, zlim2, zlim3 ) & |
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| 244 | & * ztem1 / ( 0.1 + ztem1 ) & |
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| 245 | & * MAX( 1., tr(ji,jj,jk,jpphy,Kbb) * 1.e6 / 2. ) & |
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| 246 | & * zetot1 * zetot2 & |
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| 247 | & * ( 1. + EXP(-ztem2 * ztem2 / 25. ) ) & |
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| 248 | & * MIN( 1., 50. / ( hmld(ji,jj) + rtrn ) ) |
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| 249 | xfracal(ji,jj,jk) = MIN( 0.8 , xfracal(ji,jj,jk) ) |
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| 250 | xfracal(ji,jj,jk) = MAX( 0.02, xfracal(ji,jj,jk) ) |
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| 251 | END_3D |
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[10227] | 252 | ! |
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[15090] | 253 | DO_3D( nn_hls, nn_hls, nn_hls, nn_hls, 1, jpkm1) |
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[12377] | 254 | ! denitrification factor computed from O2 levels |
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| 255 | nitrfac(ji,jj,jk) = MAX( 0.e0, 0.4 * ( 6.e-6 - tr(ji,jj,jk,jpoxy,Kbb) ) & |
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| 256 | & / ( oxymin + tr(ji,jj,jk,jpoxy,Kbb) ) ) |
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| 257 | nitrfac(ji,jj,jk) = MIN( 1., nitrfac(ji,jj,jk) ) |
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| 258 | ! |
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| 259 | ! denitrification factor computed from NO3 levels |
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| 260 | nitrfac2(ji,jj,jk) = MAX( 0.e0, ( 1.E-6 - tr(ji,jj,jk,jpno3,Kbb) ) & |
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| 261 | & / ( 1.E-6 + tr(ji,jj,jk,jpno3,Kbb) ) ) |
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| 262 | nitrfac2(ji,jj,jk) = MIN( 1., nitrfac2(ji,jj,jk) ) |
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| 263 | END_3D |
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[10227] | 264 | ! |
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| 265 | IF( lk_iomput .AND. knt == nrdttrc ) THEN ! save output diagnostics |
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[12276] | 266 | CALL iom_put( "xfracal", xfracal(:,:,:) * tmask(:,:,:) ) ! euphotic layer deptht |
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| 267 | CALL iom_put( "LNnut" , xlimphy(:,:,:) * tmask(:,:,:) ) ! Nutrient limitation term |
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| 268 | CALL iom_put( "LDnut" , xlimdia(:,:,:) * tmask(:,:,:) ) ! Nutrient limitation term |
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| 269 | CALL iom_put( "LNFe" , xlimnfe(:,:,:) * tmask(:,:,:) ) ! Iron limitation term |
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| 270 | CALL iom_put( "LDFe" , xlimdfe(:,:,:) * tmask(:,:,:) ) ! Iron limitation term |
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[15459] | 271 | CALL iom_put( "SIZEN" , sizen (:,:,:) * tmask(:,:,:) ) ! Iron limitation term |
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| 272 | CALL iom_put( "SIZED" , sized (:,:,:) * tmask(:,:,:) ) ! Iron limitation term |
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[10227] | 273 | ENDIF |
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| 274 | ! |
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| 275 | IF( ln_timing ) CALL timing_stop('p4z_lim') |
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| 276 | ! |
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| 277 | END SUBROUTINE p4z_lim |
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| 278 | |
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| 279 | |
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| 280 | SUBROUTINE p4z_lim_init |
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| 281 | !!---------------------------------------------------------------------- |
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| 282 | !! *** ROUTINE p4z_lim_init *** |
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| 283 | !! |
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[15459] | 284 | !! ** Purpose : Initialization of the nutrient limitation parameters |
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[10227] | 285 | !! |
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[15459] | 286 | !! ** Method : Read the namp4zlim namelist and check the parameters |
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[10227] | 287 | !! called at the first timestep (nittrc000) |
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| 288 | !! |
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[15459] | 289 | !! ** input : Namelist namp4zlim |
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[10227] | 290 | !! |
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| 291 | !!---------------------------------------------------------------------- |
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| 292 | INTEGER :: ios ! Local integer |
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[15459] | 293 | |
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| 294 | ! Namelist block |
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[10227] | 295 | NAMELIST/namp4zlim/ concnno3, concdno3, concnnh4, concdnh4, concnfer, concdfer, concbfe, & |
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| 296 | & concbno3, concbnh4, xsizedia, xsizephy, xsizern, xsizerd, & |
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| 297 | & xksi1, xksi2, xkdoc, qnfelim, qdfelim, caco3r, oxymin |
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| 298 | !!---------------------------------------------------------------------- |
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| 299 | ! |
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| 300 | IF(lwp) THEN |
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| 301 | WRITE(numout,*) |
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| 302 | WRITE(numout,*) 'p4z_lim_init : initialization of nutrient limitations' |
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| 303 | WRITE(numout,*) '~~~~~~~~~~~~' |
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| 304 | ENDIF |
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| 305 | ! |
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| 306 | READ ( numnatp_ref, namp4zlim, IOSTAT = ios, ERR = 901) |
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[11536] | 307 | 901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namp4zlim in reference namelist' ) |
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[10227] | 308 | READ ( numnatp_cfg, namp4zlim, IOSTAT = ios, ERR = 902 ) |
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[11536] | 309 | 902 IF( ios > 0 ) CALL ctl_nam ( ios , 'namp4zlim in configuration namelist' ) |
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[10227] | 310 | IF(lwm) WRITE( numonp, namp4zlim ) |
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[15459] | 311 | |
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[10227] | 312 | ! |
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| 313 | IF(lwp) THEN ! control print |
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| 314 | WRITE(numout,*) ' Namelist : namp4zlim' |
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| 315 | WRITE(numout,*) ' mean rainratio caco3r = ', caco3r |
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| 316 | WRITE(numout,*) ' NO3 half saturation of nanophyto concnno3 = ', concnno3 |
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| 317 | WRITE(numout,*) ' NO3 half saturation of diatoms concdno3 = ', concdno3 |
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| 318 | WRITE(numout,*) ' NH4 half saturation for phyto concnnh4 = ', concnnh4 |
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| 319 | WRITE(numout,*) ' NH4 half saturation for diatoms concdnh4 = ', concdnh4 |
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| 320 | WRITE(numout,*) ' half saturation constant for Si uptake xksi1 = ', xksi1 |
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| 321 | WRITE(numout,*) ' half saturation constant for Si/C xksi2 = ', xksi2 |
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| 322 | WRITE(numout,*) ' half-sat. of DOC remineralization xkdoc = ', xkdoc |
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| 323 | WRITE(numout,*) ' Iron half saturation for nanophyto concnfer = ', concnfer |
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| 324 | WRITE(numout,*) ' Iron half saturation for diatoms concdfer = ', concdfer |
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| 325 | WRITE(numout,*) ' size ratio for nanophytoplankton xsizern = ', xsizern |
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| 326 | WRITE(numout,*) ' size ratio for diatoms xsizerd = ', xsizerd |
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| 327 | WRITE(numout,*) ' NO3 half saturation of bacteria concbno3 = ', concbno3 |
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| 328 | WRITE(numout,*) ' NH4 half saturation for bacteria concbnh4 = ', concbnh4 |
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| 329 | WRITE(numout,*) ' Minimum size criteria for diatoms xsizedia = ', xsizedia |
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| 330 | WRITE(numout,*) ' Minimum size criteria for nanophyto xsizephy = ', xsizephy |
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| 331 | WRITE(numout,*) ' Fe half saturation for bacteria concbfe = ', concbfe |
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| 332 | WRITE(numout,*) ' halk saturation constant for anoxia oxymin =' , oxymin |
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| 333 | WRITE(numout,*) ' optimal Fe quota for nano. qnfelim = ', qnfelim |
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| 334 | WRITE(numout,*) ' Optimal Fe quota for diatoms qdfelim = ', qdfelim |
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| 335 | ENDIF |
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| 336 | ! |
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[12276] | 337 | nitrfac (:,:,jpk) = 0._wp |
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| 338 | nitrfac2(:,:,jpk) = 0._wp |
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| 339 | xfracal (:,:,jpk) = 0._wp |
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| 340 | xlimphy (:,:,jpk) = 0._wp |
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| 341 | xlimdia (:,:,jpk) = 0._wp |
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| 342 | xlimnfe (:,:,jpk) = 0._wp |
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| 343 | xlimdfe (:,:,jpk) = 0._wp |
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[10227] | 344 | ! |
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| 345 | END SUBROUTINE p4z_lim_init |
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| 346 | |
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| 347 | |
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| 348 | INTEGER FUNCTION p4z_lim_alloc() |
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| 349 | !!---------------------------------------------------------------------- |
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| 350 | !! *** ROUTINE p5z_lim_alloc *** |
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[15459] | 351 | !! |
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| 352 | ! Allocation of the arrays used in this module |
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[10227] | 353 | !!---------------------------------------------------------------------- |
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[10425] | 354 | USE lib_mpp , ONLY: ctl_stop |
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[10227] | 355 | !!---------------------------------------------------------------------- |
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| 356 | |
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| 357 | !* Biological arrays for phytoplankton growth |
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| 358 | ALLOCATE( xnanono3(jpi,jpj,jpk), xdiatno3(jpi,jpj,jpk), & |
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| 359 | & xnanonh4(jpi,jpj,jpk), xdiatnh4(jpi,jpj,jpk), & |
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| 360 | & xnanopo4(jpi,jpj,jpk), xdiatpo4(jpi,jpj,jpk), & |
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[15459] | 361 | & xnanofer(jpi,jpj,jpk), xdiatfer(jpi,jpj,jpk), & |
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[10227] | 362 | & xlimphy (jpi,jpj,jpk), xlimdia (jpi,jpj,jpk), & |
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| 363 | & xlimnfe (jpi,jpj,jpk), xlimdfe (jpi,jpj,jpk), & |
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| 364 | & xlimbac (jpi,jpj,jpk), xlimbacl(jpi,jpj,jpk), & |
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| 365 | & concnfe (jpi,jpj,jpk), concdfe (jpi,jpj,jpk), & |
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[15459] | 366 | & xqfuncfecn(jpi,jpj,jpk), xqfuncfecd(jpi,jpj,jpk), & |
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[10227] | 367 | & xlimsi (jpi,jpj,jpk), STAT=p4z_lim_alloc ) |
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| 368 | ! |
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[10425] | 369 | IF( p4z_lim_alloc /= 0 ) CALL ctl_stop( 'STOP', 'p4z_lim_alloc : failed to allocate arrays.' ) |
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[10227] | 370 | ! |
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| 371 | END FUNCTION p4z_lim_alloc |
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| 372 | |
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| 373 | !!====================================================================== |
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| 374 | END MODULE p4zlim |
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